Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390850 | XP_003593591.1 | 86.331 | 139 | 18 | 1 | 1 | 138 | 1 | 139 | 1.06e-77 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390850 | sp|F4JIJ7|BH162_ARATH | 41.781 | 146 | 74 | 4 | 3 | 137 | 7 | 152 | 8.88e-28 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390850 | G7IPU7 | 86.331 | 139 | 18 | 1 | 1 | 138 | 1 | 139 | 5.05e-78 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1390850 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191040 | Msa1390850 | 0.852124 | 5.671726e-61 | -8.615850e-47 |
| Msa0233340 | Msa1390850 | 0.851934 | 6.421426e-61 | -8.615850e-47 |
| Msa0234110 | Msa1390850 | 0.870248 | 1.683721e-66 | -8.615850e-47 |
| Msa0236110 | Msa1390850 | 0.801939 | 7.105202e-49 | -8.615850e-47 |
| Msa0301200 | Msa1390850 | 0.868487 | 6.296473e-66 | -8.615850e-47 |
| Msa0311690 | Msa1390850 | 0.858235 | 9.470462e-63 | -8.615850e-47 |
| Msa0312840 | Msa1390850 | 0.872086 | 4.165096e-67 | -8.615850e-47 |
| Msa0314630 | Msa1390850 | 0.802676 | 5.010415e-49 | -8.615850e-47 |
| Msa0534570 | Msa1390850 | 0.801735 | 7.827019e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390850 | MtrunA17_Chr2g0282341 | 87.879 | 99 | 12 | 0 | 40 | 138 | 3 | 101 | 1.62e-58 | 177 |
| Msa1390850 | MtrunA17_Chr2g0324511 | 44.444 | 135 | 70 | 2 | 6 | 135 | 12 | 146 | 1.41e-32 | 113 |
| Msa1390850 | MtrunA17_Chr4g0040201 | 45.833 | 144 | 63 | 5 | 3 | 136 | 7 | 145 | 2.65e-29 | 105 |
| Msa1390850 | MtrunA17_Chr2g0324521 | 41.053 | 95 | 56 | 0 | 41 | 135 | 5 | 99 | 6.54e-21 | 82.4 |
| Msa1390850 | MtrunA17_Chr2g0324571 | 38.144 | 97 | 58 | 1 | 41 | 135 | 5 | 101 | 3.43e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390850 | AT4G20970.1 | 41.781 | 146 | 74 | 4 | 3 | 137 | 7 | 152 | 9.03e-29 | 104 |
Find 28 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGGTTGTTCTAATAAC+TGG | 0.223327 | tig0021393:+35030 | Msa1390850:CDS |
| AAAATTAAGATACAACAAAT+TGG | 0.306857 | tig0021393:+35000 | Msa1390850:CDS |
| TTTCTATTCATATTCACATT+TGG | 0.306963 | tig0021393:-34952 | None:intergenic |
| ACAAATTGGTTTAGTCTTAG+AGG | 0.319445 | tig0021393:+35014 | Msa1390850:CDS |
| TCTGCCTCATCAAACTTCTA+AGG | 0.344529 | tig0021393:+34605 | Msa1390850:CDS |
| CTGTCAACTCTTGATGAACT+AGG | 0.359161 | tig0021393:-34519 | None:intergenic |
| TATTGTCAATGCAAGTTATA+AGG | 0.360092 | tig0021393:+35113 | Msa1390850:CDS |
| TTGAGTATCTCCTGTTATTG+AGG | 0.401617 | tig0021393:+34473 | Msa1390850:five_prime_UTR |
| ACTGTTCCAACCTCAATAAC+AGG | 0.406192 | tig0021393:-34483 | None:intergenic |
| GGTTGTTCTAATAACTGGAT+TGG | 0.435753 | tig0021393:+35035 | Msa1390850:CDS |
| GTATCTCCTGTTATTGAGGT+TGG | 0.448324 | tig0021393:+34477 | Msa1390850:five_prime_UTR |
| CTTCGTGTTCTTCATGAAGA+AGG | 0.454763 | tig0021393:+35084 | Msa1390850:CDS |
| GGAACAGAAAAGGAAACTTA+AGG | 0.513899 | tig0021393:+36857 | Msa1390850:intron |
| GAAAAGAAGAACTTTCTACT+AGG | 0.532951 | tig0021393:+34919 | Msa1390850:CDS |
| TGTCAACTCTTGATGAACTA+GGG | 0.540967 | tig0021393:-34518 | None:intergenic |
| GATCAACTTGGAGAAAATGA+AGG | 0.550998 | tig0021393:+34897 | Msa1390850:CDS |
| CTAGTTCATCAAGAGTTGAC+AGG | 0.559038 | tig0021393:+34520 | Msa1390850:CDS |
| ACTTTCTACTAGGAATTCAA+AGG | 0.595040 | tig0021393:+34929 | Msa1390850:CDS |
| AAAGAAATTACAGATCAACT+TGG | 0.602314 | tig0021393:+34885 | Msa1390850:CDS |
| TATTGAGGTTGGAACAGTGA+TGG | 0.604127 | tig0021393:+34488 | Msa1390850:exon |
| GAGACCTTAGAAGTTTGATG+AGG | 0.624740 | tig0021393:-34609 | None:intergenic |
| ATGAATAGAAACAAGAACAT+GGG | 0.625623 | tig0021393:+34964 | Msa1390850:CDS |
| TATGAATAGAAACAAGAACA+TGG | 0.630359 | tig0021393:+34963 | Msa1390850:CDS |
| TCTGATGCAGGCAATTTCAG+CGG | 0.656079 | tig0021393:+34831 | Msa1390850:intron |
| GCAGAAATGAGTTGAGCTTG+TGG | 0.677546 | tig0021393:-34587 | None:intergenic |
| CTTCTTCATGAAGAACACGA+AGG | 0.679799 | tig0021393:-35083 | None:intergenic |
| GAAATGAGTTGAGCTTGTGG+CGG | 0.691957 | tig0021393:-34584 | None:intergenic |
| TTCAGCGGCAGATCAGCTCG+AGG | 0.700026 | tig0021393:+34846 | Msa1390850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGATTTTTATAATATTTG+TGG | + | tig0021393:35759-35778 | Msa1390850:intron | 10.0% |
| !! | TTGATAAAAATATGATTATT+TGG | + | tig0021393:36021-36040 | Msa1390850:intron | 10.0% |
| !!! | TATGATTTTTATAATATTTG+TGG | + | tig0021393:35759-35778 | Msa1390850:intron | 10.0% |
| !! | TTGATAAAAATATGATTATT+TGG | + | tig0021393:36021-36040 | Msa1390850:intron | 10.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | - | tig0021393:35000-35019 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | + | tig0021393:35000-35019 | Msa1390850:CDS | 15.0% |
| !! | TTAATTTCCTTTAATATGAA+CGG | + | tig0021393:35193-35212 | Msa1390850:intron | 15.0% |
| !!! | TTTTTTTTTTGGAAAATTTG+AGG | - | tig0021393:35462-35481 | None:intergenic | 15.0% |
| !!! | GTAATTAGAAGTTTTTTTTT+TGG | - | tig0021393:35473-35492 | None:intergenic | 15.0% |
| !!! | TTACTTATTTTTTTTCTTTG+AGG | + | tig0021393:35646-35665 | Msa1390850:intron | 15.0% |
| !! | AAAGTTAACTATTTATAGAT+AGG | - | tig0021393:36101-36120 | None:intergenic | 15.0% |
| !! | GATATCATTAAATAATATGT+TGG | + | tig0021393:36836-36855 | Msa1390850:intron | 15.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | - | tig0021393:35000-35019 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | + | tig0021393:35000-35019 | Msa1390850:CDS | 15.0% |
| !! | TTAATTTCCTTTAATATGAA+CGG | + | tig0021393:35193-35212 | Msa1390850:intron | 15.0% |
| !!! | TTTTTTTTTTGGAAAATTTG+AGG | - | tig0021393:35462-35481 | None:intergenic | 15.0% |
| !!! | GTAATTAGAAGTTTTTTTTT+TGG | - | tig0021393:35473-35492 | None:intergenic | 15.0% |
| !!! | TTACTTATTTTTTTTCTTTG+AGG | + | tig0021393:35646-35665 | Msa1390850:intron | 15.0% |
| !! | AAAGTTAACTATTTATAGAT+AGG | - | tig0021393:36101-36120 | None:intergenic | 15.0% |
| !! | GATATCATTAAATAATATGT+TGG | + | tig0021393:36836-36855 | Msa1390850:intron | 15.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | + | tig0021393:34693-34712 | Msa1390850:intron | 20.0% |
| !! | ATGTTAGTATTGTTAGTATT+TGG | + | tig0021393:34792-34811 | Msa1390850:intron | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | + | tig0021393:34819-34838 | Msa1390850:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | - | tig0021393:34955-34974 | None:intergenic | 20.0% |
| !!! | ATTAACTTGTGTCTTAATTA+AGG | + | tig0021393:35361-35380 | Msa1390850:intron | 20.0% |
| !! | ATACTTAAATACATGAATCA+GGG | - | tig0021393:35623-35642 | None:intergenic | 20.0% |
| !! | AATTTAGTTGTCATTATAAG+TGG | + | tig0021393:35674-35693 | Msa1390850:intron | 20.0% |
| !! | TTCAAACTGATATTTGAATA+CGG | + | tig0021393:36072-36091 | Msa1390850:intron | 20.0% |
| !! | TCCTTCATAAATTAAAAGAA+CGG | - | tig0021393:36373-36392 | None:intergenic | 20.0% |
| !!! | TAAAAGAAATTGTTTTTGTC+AGG | + | tig0021393:36626-36645 | Msa1390850:intron | 20.0% |
| !! | TTCAATATAAAATTGAAAGC+AGG | - | tig0021393:36733-36752 | None:intergenic | 20.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | + | tig0021393:34693-34712 | Msa1390850:intron | 20.0% |
| !! | ATGTTAGTATTGTTAGTATT+TGG | + | tig0021393:34792-34811 | Msa1390850:intron | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | + | tig0021393:34819-34838 | Msa1390850:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | - | tig0021393:34955-34974 | None:intergenic | 20.0% |
| !!! | ATTAACTTGTGTCTTAATTA+AGG | + | tig0021393:35361-35380 | Msa1390850:intron | 20.0% |
| !! | ATACTTAAATACATGAATCA+GGG | - | tig0021393:35623-35642 | None:intergenic | 20.0% |
| !! | AATTTAGTTGTCATTATAAG+TGG | + | tig0021393:35674-35693 | Msa1390850:intron | 20.0% |
| !! | TTCAAACTGATATTTGAATA+CGG | + | tig0021393:36072-36091 | Msa1390850:intron | 20.0% |
| !! | TCCTTCATAAATTAAAAGAA+CGG | - | tig0021393:36373-36392 | None:intergenic | 20.0% |
| !!! | TAAAAGAAATTGTTTTTGTC+AGG | + | tig0021393:36626-36645 | Msa1390850:intron | 20.0% |
| !! | TTCAATATAAAATTGAAAGC+AGG | - | tig0021393:36733-36752 | None:intergenic | 20.0% |
| !! | ATTTCTTCTTTTGCTTTCAA+TGG | - | tig0021393:34550-34569 | None:intergenic | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | + | tig0021393:34885-34904 | Msa1390850:CDS | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | + | tig0021393:34963-34982 | Msa1390850:CDS | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | + | tig0021393:34964-34983 | Msa1390850:CDS | 25.0% |
| ! | TATTGTCAATGCAAGTTATA+AGG | + | tig0021393:35113-35132 | Msa1390850:CDS | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | - | tig0021393:35173-35192 | None:intergenic | 25.0% |
| !! | CATTTAGTGAATGATTTTGT+CGG | - | tig0021393:35495-35514 | None:intergenic | 25.0% |
| ! | CATACTTAAATACATGAATC+AGG | - | tig0021393:35624-35643 | None:intergenic | 25.0% |
| ! | AGTCAATAACATCAAACTAA+CGG | - | tig0021393:35953-35972 | None:intergenic | 25.0% |
| !! | TGATGTTATTGACTACAATA+TGG | + | tig0021393:35959-35978 | Msa1390850:intron | 25.0% |
| ! | GTTAACTATTTATAGATAGG+AGG | - | tig0021393:36098-36117 | None:intergenic | 25.0% |
| ! | CTAATTGCATTGTTCTATTT+AGG | + | tig0021393:36123-36142 | Msa1390850:intron | 25.0% |
| ! | CCTTCATAAATTAAAAGAAC+GGG | - | tig0021393:36372-36391 | None:intergenic | 25.0% |
| ! | TAGCAAAAATCTGAATGAAA+AGG | + | tig0021393:36754-36773 | Msa1390850:intron | 25.0% |
| ! | ATAATATGTTGGAACAGAAA+AGG | + | tig0021393:36847-36866 | Msa1390850:intron | 25.0% |
| !! | ATTTCTTCTTTTGCTTTCAA+TGG | - | tig0021393:34550-34569 | None:intergenic | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | + | tig0021393:34885-34904 | Msa1390850:CDS | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | + | tig0021393:34963-34982 | Msa1390850:CDS | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | + | tig0021393:34964-34983 | Msa1390850:CDS | 25.0% |
| ! | TATTGTCAATGCAAGTTATA+AGG | + | tig0021393:35113-35132 | Msa1390850:CDS | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | - | tig0021393:35173-35192 | None:intergenic | 25.0% |
| !! | CATTTAGTGAATGATTTTGT+CGG | - | tig0021393:35495-35514 | None:intergenic | 25.0% |
| ! | CATACTTAAATACATGAATC+AGG | - | tig0021393:35624-35643 | None:intergenic | 25.0% |
| ! | AGTCAATAACATCAAACTAA+CGG | - | tig0021393:35953-35972 | None:intergenic | 25.0% |
| !! | TGATGTTATTGACTACAATA+TGG | + | tig0021393:35959-35978 | Msa1390850:intron | 25.0% |
| ! | GTTAACTATTTATAGATAGG+AGG | - | tig0021393:36098-36117 | None:intergenic | 25.0% |
| ! | CTAATTGCATTGTTCTATTT+AGG | + | tig0021393:36123-36142 | Msa1390850:intron | 25.0% |
| ! | CCTTCATAAATTAAAAGAAC+GGG | - | tig0021393:36372-36391 | None:intergenic | 25.0% |
| ! | TAGCAAAAATCTGAATGAAA+AGG | + | tig0021393:36754-36773 | Msa1390850:intron | 25.0% |
| ! | ATAATATGTTGGAACAGAAA+AGG | + | tig0021393:36847-36866 | Msa1390850:intron | 25.0% |
| !!! | GTCACTATGTTTTAAAACGA+CGG | + | tig0021393:34769-34788 | Msa1390850:intron | 30.0% |
| GAAAAGAAGAACTTTCTACT+AGG | + | tig0021393:34919-34938 | Msa1390850:CDS | 30.0% | |
| ACTTTCTACTAGGAATTCAA+AGG | + | tig0021393:34929-34948 | Msa1390850:CDS | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | + | tig0021393:35014-35033 | Msa1390850:CDS | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | + | tig0021393:35030-35049 | Msa1390850:CDS | 30.0% | |
| ACATGATCCGTTCATATTAA+AGG | - | tig0021393:35203-35222 | None:intergenic | 30.0% | |
| !! | TTCCTTAACTTGTGTTCTTA+AGG | - | tig0021393:35235-35254 | None:intergenic | 30.0% |
| CTTGCACTTGATTTCATATT+GGG | - | tig0021393:35403-35422 | None:intergenic | 30.0% | |
| TCTTGCACTTGATTTCATAT+TGG | - | tig0021393:35404-35423 | None:intergenic | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | + | tig0021393:35404-35423 | Msa1390850:intron | 30.0% | |
| ! | GTCTTACATACTTTTACGTA+TGG | - | tig0021393:35526-35545 | None:intergenic | 30.0% |
| !! | GTCAATTATGCTTTGTTTCT+AGG | + | tig0021393:35558-35577 | Msa1390850:intron | 30.0% |
| ! | TCTACCGAATATTTTCTCAA+AGG | + | tig0021393:35910-35929 | Msa1390850:intron | 30.0% |
| ! | CTACCGAATATTTTCTCAAA+GGG | + | tig0021393:35911-35930 | Msa1390850:intron | 30.0% |
| ! | TACCGAATATTTTCTCAAAG+GGG | + | tig0021393:35912-35931 | Msa1390850:intron | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+CGG | - | tig0021393:35917-35936 | None:intergenic | 30.0% |
| TCAATAACATCAAACTAACG+GGG | - | tig0021393:35951-35970 | None:intergenic | 30.0% | |
| GTCAATAACATCAAACTAAC+GGG | - | tig0021393:35952-35971 | None:intergenic | 30.0% | |
| TTGCATTGTTCTATTTAGGT+AGG | + | tig0021393:36127-36146 | Msa1390850:intron | 30.0% | |
| TCTATTTAGGTAGGAGAATT+TGG | + | tig0021393:36136-36155 | Msa1390850:intron | 30.0% | |
| !!! | CCCGTTCTTTTAATTTATGA+AGG | + | tig0021393:36369-36388 | Msa1390850:intron | 30.0% |
| ATATACGCGATGAAAATGTT+TGG | + | tig0021393:36511-36530 | Msa1390850:intron | 30.0% | |
| !! | TTAACTTGCTTTCGAATTCT+AGG | - | tig0021393:36600-36619 | None:intergenic | 30.0% |
| ATTCGAAAGCAAGTTAAGTT+TGG | + | tig0021393:36603-36622 | Msa1390850:intron | 30.0% | |
| ! | TTTTGTCAGGTATATGAACT+CGG | + | tig0021393:36639-36658 | Msa1390850:intron | 30.0% |
| ATATGAACTCGGATATTTAG+AGG | + | tig0021393:36650-36669 | Msa1390850:intron | 30.0% | |
| GCTTATGCAAGTCTATAAAT+GGG | + | tig0021393:36672-36691 | Msa1390850:intron | 30.0% | |
| ! | TGCATATTTATGTTGCTGTT+TGG | + | tig0021393:36695-36714 | Msa1390850:intron | 30.0% |
| !!! | GTCACTATGTTTTAAAACGA+CGG | + | tig0021393:34769-34788 | Msa1390850:intron | 30.0% |
| GAAAAGAAGAACTTTCTACT+AGG | + | tig0021393:34919-34938 | Msa1390850:CDS | 30.0% | |
| ACTTTCTACTAGGAATTCAA+AGG | + | tig0021393:34929-34948 | Msa1390850:CDS | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | + | tig0021393:35014-35033 | Msa1390850:CDS | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | + | tig0021393:35030-35049 | Msa1390850:CDS | 30.0% | |
| ACATGATCCGTTCATATTAA+AGG | - | tig0021393:35203-35222 | None:intergenic | 30.0% | |
| !! | TTCCTTAACTTGTGTTCTTA+AGG | - | tig0021393:35235-35254 | None:intergenic | 30.0% |
| CTTGCACTTGATTTCATATT+GGG | - | tig0021393:35403-35422 | None:intergenic | 30.0% | |
| TCTTGCACTTGATTTCATAT+TGG | - | tig0021393:35404-35423 | None:intergenic | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | + | tig0021393:35404-35423 | Msa1390850:intron | 30.0% | |
| ! | GTCTTACATACTTTTACGTA+TGG | - | tig0021393:35526-35545 | None:intergenic | 30.0% |
| !! | GTCAATTATGCTTTGTTTCT+AGG | + | tig0021393:35558-35577 | Msa1390850:intron | 30.0% |
| ! | TCTACCGAATATTTTCTCAA+AGG | + | tig0021393:35910-35929 | Msa1390850:intron | 30.0% |
| ! | CTACCGAATATTTTCTCAAA+GGG | + | tig0021393:35911-35930 | Msa1390850:intron | 30.0% |
| ! | TACCGAATATTTTCTCAAAG+GGG | + | tig0021393:35912-35931 | Msa1390850:intron | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+CGG | - | tig0021393:35917-35936 | None:intergenic | 30.0% |
| TCAATAACATCAAACTAACG+GGG | - | tig0021393:35951-35970 | None:intergenic | 30.0% | |
| GTCAATAACATCAAACTAAC+GGG | - | tig0021393:35952-35971 | None:intergenic | 30.0% | |
| TTGCATTGTTCTATTTAGGT+AGG | + | tig0021393:36127-36146 | Msa1390850:intron | 30.0% | |
| TCTATTTAGGTAGGAGAATT+TGG | + | tig0021393:36136-36155 | Msa1390850:intron | 30.0% | |
| !!! | CCCGTTCTTTTAATTTATGA+AGG | + | tig0021393:36369-36388 | Msa1390850:intron | 30.0% |
| ATATACGCGATGAAAATGTT+TGG | + | tig0021393:36511-36530 | Msa1390850:intron | 30.0% | |
| !! | TTAACTTGCTTTCGAATTCT+AGG | - | tig0021393:36600-36619 | None:intergenic | 30.0% |
| ATTCGAAAGCAAGTTAAGTT+TGG | + | tig0021393:36603-36622 | Msa1390850:intron | 30.0% | |
| ! | TTTTGTCAGGTATATGAACT+CGG | + | tig0021393:36639-36658 | Msa1390850:intron | 30.0% |
| ATATGAACTCGGATATTTAG+AGG | + | tig0021393:36650-36669 | Msa1390850:intron | 30.0% | |
| GCTTATGCAAGTCTATAAAT+GGG | + | tig0021393:36672-36691 | Msa1390850:intron | 30.0% | |
| ! | TGCATATTTATGTTGCTGTT+TGG | + | tig0021393:36695-36714 | Msa1390850:intron | 30.0% |
| TTGAGTATCTCCTGTTATTG+AGG | + | tig0021393:34473-34492 | Msa1390850:five_prime_UTR | 35.0% | |
| TGTCAACTCTTGATGAACTA+GGG | - | tig0021393:34521-34540 | None:intergenic | 35.0% | |
| CTAAGAGAAGAAGAGAGTAA+AGG | - | tig0021393:34644-34663 | None:intergenic | 35.0% | |
| GATCAACTTGGAGAAAATGA+AGG | + | tig0021393:34897-34916 | Msa1390850:CDS | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | + | tig0021393:35035-35054 | Msa1390850:CDS | 35.0% | |
| TTTCCATTCAATACATTGCC+AGG | + | tig0021393:35152-35171 | Msa1390850:intron | 35.0% | |
| TTACCTGGCAATGTATTGAA+TGG | - | tig0021393:35158-35177 | None:intergenic | 35.0% | |
| TGCCTTAAGAACACAAGTTA+AGG | + | tig0021393:35230-35249 | Msa1390850:intron | 35.0% | |
| ! | CAAGCTTTAGTTTCACCTAA+GGG | - | tig0021393:35598-35617 | None:intergenic | 35.0% |
| ! | TCAAGCTTTAGTTTCACCTA+AGG | - | tig0021393:35599-35618 | None:intergenic | 35.0% |
| !! | ATCACTTTTCCCTCAGAAAT+TGG | - | tig0021393:36570-36589 | None:intergenic | 35.0% |
| GGCTTATGCAAGTCTATAAA+TGG | + | tig0021393:36671-36690 | Msa1390850:intron | 35.0% | |
| GGAACAGAAAAGGAAACTTA+AGG | + | tig0021393:36857-36876 | Msa1390850:intron | 35.0% | |
| TTGAGTATCTCCTGTTATTG+AGG | + | tig0021393:34473-34492 | Msa1390850:five_prime_UTR | 35.0% | |
| TGTCAACTCTTGATGAACTA+GGG | - | tig0021393:34521-34540 | None:intergenic | 35.0% | |
| CTAAGAGAAGAAGAGAGTAA+AGG | - | tig0021393:34644-34663 | None:intergenic | 35.0% | |
| GATCAACTTGGAGAAAATGA+AGG | + | tig0021393:34897-34916 | Msa1390850:CDS | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | + | tig0021393:35035-35054 | Msa1390850:CDS | 35.0% | |
| TTTCCATTCAATACATTGCC+AGG | + | tig0021393:35152-35171 | Msa1390850:intron | 35.0% | |
| TTACCTGGCAATGTATTGAA+TGG | - | tig0021393:35158-35177 | None:intergenic | 35.0% | |
| TGCCTTAAGAACACAAGTTA+AGG | + | tig0021393:35230-35249 | Msa1390850:intron | 35.0% | |
| ! | CAAGCTTTAGTTTCACCTAA+GGG | - | tig0021393:35598-35617 | None:intergenic | 35.0% |
| ! | TCAAGCTTTAGTTTCACCTA+AGG | - | tig0021393:35599-35618 | None:intergenic | 35.0% |
| !! | ATCACTTTTCCCTCAGAAAT+TGG | - | tig0021393:36570-36589 | None:intergenic | 35.0% |
| GGCTTATGCAAGTCTATAAA+TGG | + | tig0021393:36671-36690 | Msa1390850:intron | 35.0% | |
| GGAACAGAAAAGGAAACTTA+AGG | + | tig0021393:36857-36876 | Msa1390850:intron | 35.0% | |
| GTATCTCCTGTTATTGAGGT+TGG | + | tig0021393:34477-34496 | Msa1390850:five_prime_UTR | 40.0% | |
| ACTGTTCCAACCTCAATAAC+AGG | - | tig0021393:34486-34505 | None:intergenic | 40.0% | |
| TATTGAGGTTGGAACAGTGA+TGG | + | tig0021393:34488-34507 | Msa1390850:exon | 40.0% | |
| CTGTCAACTCTTGATGAACT+AGG | - | tig0021393:34522-34541 | None:intergenic | 40.0% | |
| CTAGTTCATCAAGAGTTGAC+AGG | + | tig0021393:34520-34539 | Msa1390850:CDS | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | + | tig0021393:34605-34624 | Msa1390850:CDS | 40.0% | |
| GAGACCTTAGAAGTTTGATG+AGG | - | tig0021393:34612-34631 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | - | tig0021393:35086-35105 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | + | tig0021393:35084-35103 | Msa1390850:CDS | 40.0% | |
| CACATGACCTCGAAGTTATA+GGG | + | tig0021393:35434-35453 | Msa1390850:intron | 40.0% | |
| ACATGACCTCGAAGTTATAG+GGG | + | tig0021393:35435-35454 | Msa1390850:intron | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | + | tig0021393:35580-35599 | Msa1390850:intron | 40.0% | |
| TAGCCTAATGCCTTTCAAAG+TGG | + | tig0021393:36208-36227 | Msa1390850:intron | 40.0% | |
| AGCCTAATGCCTTTCAAAGT+GGG | + | tig0021393:36209-36228 | Msa1390850:intron | 40.0% | |
| !! | TACCCACTTTGAAAGGCATT+AGG | - | tig0021393:36214-36233 | None:intergenic | 40.0% |
| GCATTGTTACCCACTTTGAA+AGG | - | tig0021393:36221-36240 | None:intergenic | 40.0% | |
| GGACATCTATATTGTGTGTG+TGG | + | tig0021393:36532-36551 | Msa1390850:intron | 40.0% | |
| TAGTAGTCCTCCAATTTCTG+AGG | + | tig0021393:36557-36576 | Msa1390850:intron | 40.0% | |
| AGTAGTCCTCCAATTTCTGA+GGG | + | tig0021393:36558-36577 | Msa1390850:intron | 40.0% | |
| ! | ACTTTTCCCTCAGAAATTGG+AGG | - | tig0021393:36567-36586 | None:intergenic | 40.0% |
| ! | TTTCTGAGGGAAAAGTGATG+TGG | + | tig0021393:36571-36590 | Msa1390850:intron | 40.0% |
| GTATCTCCTGTTATTGAGGT+TGG | + | tig0021393:34477-34496 | Msa1390850:five_prime_UTR | 40.0% | |
| ACTGTTCCAACCTCAATAAC+AGG | - | tig0021393:34486-34505 | None:intergenic | 40.0% | |
| TATTGAGGTTGGAACAGTGA+TGG | + | tig0021393:34488-34507 | Msa1390850:exon | 40.0% | |
| CTGTCAACTCTTGATGAACT+AGG | - | tig0021393:34522-34541 | None:intergenic | 40.0% | |
| CTAGTTCATCAAGAGTTGAC+AGG | + | tig0021393:34520-34539 | Msa1390850:CDS | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | + | tig0021393:34605-34624 | Msa1390850:CDS | 40.0% | |
| GAGACCTTAGAAGTTTGATG+AGG | - | tig0021393:34612-34631 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | - | tig0021393:35086-35105 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | + | tig0021393:35084-35103 | Msa1390850:CDS | 40.0% | |
| CACATGACCTCGAAGTTATA+GGG | + | tig0021393:35434-35453 | Msa1390850:intron | 40.0% | |
| ACATGACCTCGAAGTTATAG+GGG | + | tig0021393:35435-35454 | Msa1390850:intron | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | + | tig0021393:35580-35599 | Msa1390850:intron | 40.0% | |
| TAGCCTAATGCCTTTCAAAG+TGG | + | tig0021393:36208-36227 | Msa1390850:intron | 40.0% | |
| AGCCTAATGCCTTTCAAAGT+GGG | + | tig0021393:36209-36228 | Msa1390850:intron | 40.0% | |
| !! | TACCCACTTTGAAAGGCATT+AGG | - | tig0021393:36214-36233 | None:intergenic | 40.0% |
| GCATTGTTACCCACTTTGAA+AGG | - | tig0021393:36221-36240 | None:intergenic | 40.0% | |
| GGACATCTATATTGTGTGTG+TGG | + | tig0021393:36532-36551 | Msa1390850:intron | 40.0% | |
| TAGTAGTCCTCCAATTTCTG+AGG | + | tig0021393:36557-36576 | Msa1390850:intron | 40.0% | |
| AGTAGTCCTCCAATTTCTGA+GGG | + | tig0021393:36558-36577 | Msa1390850:intron | 40.0% | |
| ! | ACTTTTCCCTCAGAAATTGG+AGG | - | tig0021393:36567-36586 | None:intergenic | 40.0% |
| ! | TTTCTGAGGGAAAAGTGATG+TGG | + | tig0021393:36571-36590 | Msa1390850:intron | 40.0% |
| ! | GAAATGAGTTGAGCTTGTGG+CGG | - | tig0021393:34587-34606 | None:intergenic | 45.0% |
| ! | GCAGAAATGAGTTGAGCTTG+TGG | - | tig0021393:34590-34609 | None:intergenic | 45.0% |
| TCTGATGCAGGCAATTTCAG+CGG | + | tig0021393:34831-34850 | Msa1390850:intron | 45.0% | |
| ACTTCGAGGTCATGTGCTAA+AGG | - | tig0021393:35430-35449 | None:intergenic | 45.0% | |
| GCACATGACCTCGAAGTTAT+AGG | + | tig0021393:35433-35452 | Msa1390850:intron | 45.0% | |
| ! | GAAATGAGTTGAGCTTGTGG+CGG | - | tig0021393:34587-34606 | None:intergenic | 45.0% |
| ! | GCAGAAATGAGTTGAGCTTG+TGG | - | tig0021393:34590-34609 | None:intergenic | 45.0% |
| TCTGATGCAGGCAATTTCAG+CGG | + | tig0021393:34831-34850 | Msa1390850:intron | 45.0% | |
| ACTTCGAGGTCATGTGCTAA+AGG | - | tig0021393:35430-35449 | None:intergenic | 45.0% | |
| GCACATGACCTCGAAGTTAT+AGG | + | tig0021393:35433-35452 | Msa1390850:intron | 45.0% | |
| !! | TTATTTAATAAACAAAATAA+AGG | + | tig0021393:35848-35867 | Msa1390850:intron | 5.0% |
| !!! | ATTTTTATATTATATTAATC+AGG | + | tig0021393:36786-36805 | Msa1390850:intron | 5.0% |
| !!! | TTTTTATATTATATTAATCA+GGG | + | tig0021393:36787-36806 | Msa1390850:intron | 5.0% |
| !! | TTATTTAATAAACAAAATAA+AGG | + | tig0021393:35848-35867 | Msa1390850:intron | 5.0% |
| !!! | ATTTTTATATTATATTAATC+AGG | + | tig0021393:36786-36805 | Msa1390850:intron | 5.0% |
| !!! | TTTTTATATTATATTAATCA+GGG | + | tig0021393:36787-36806 | Msa1390850:intron | 5.0% |
| TGAGGTCCCCTATAACTTCG+AGG | - | tig0021393:35444-35463 | None:intergenic | 50.0% | |
| TGAGGTCCCCTATAACTTCG+AGG | - | tig0021393:35444-35463 | None:intergenic | 50.0% | |
| TTCAGCGGCAGATCAGCTCG+AGG | + | tig0021393:34846-34865 | Msa1390850:CDS | 60.0% | |
| TTCAGCGGCAGATCAGCTCG+AGG | + | tig0021393:34846-34865 | Msa1390850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021393 | gene | 34449 | 36884 | 34449 | ID=Msa1390850;Name=Msa1390850 |
| tig0021393 | mRNA | 34449 | 36884 | 34449 | ID=Msa1390850-mRNA-1;Parent=Msa1390850;Name=Msa1390850-mRNA-1;_AED=0.21;_eAED=0.21;_QI=58|0.5|0.33|0.66|0.5|0.66|3|0|144 |
| tig0021393 | exon | 34449 | 34626 | 34449 | ID=Msa1390850-mRNA-1:exon:12461;Parent=Msa1390850-mRNA-1 |
| tig0021393 | exon | 34841 | 35134 | 34841 | ID=Msa1390850-mRNA-1:exon:12462;Parent=Msa1390850-mRNA-1 |
| tig0021393 | exon | 36864 | 36884 | 36864 | ID=Msa1390850-mRNA-1:exon:12463;Parent=Msa1390850-mRNA-1 |
| tig0021393 | five_prime_UTR | 34449 | 34506 | 34449 | ID=Msa1390850-mRNA-1:five_prime_utr;Parent=Msa1390850-mRNA-1 |
| tig0021393 | CDS | 34507 | 34626 | 34507 | ID=Msa1390850-mRNA-1:cds;Parent=Msa1390850-mRNA-1 |
| tig0021393 | CDS | 34841 | 35134 | 34841 | ID=Msa1390850-mRNA-1:cds;Parent=Msa1390850-mRNA-1 |
| tig0021393 | CDS | 36864 | 36884 | 36864 | ID=Msa1390850-mRNA-1:cds;Parent=Msa1390850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
