Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235100 | XP_013462544.1 | 94.531 | 256 | 14 | 0 | 1 | 256 | 1 | 256 | 2.00e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235100 | sp|Q9LET0|BH107_ARATH | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 8.12e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235100 | A0A072V5E0 | 94.531 | 256 | 14 | 0 | 1 | 256 | 1 | 256 | 9.56e-177 | 495 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0235100 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222140 | Msa0235100 | 0.815009 | 1.151411e-51 | -8.615850e-47 |
| Msa0235100 | Msa0273610 | 0.822347 | 2.486307e-53 | -8.615850e-47 |
| Msa0235100 | Msa0313830 | 0.833937 | 4.001524e-56 | -8.615850e-47 |
| Msa0235100 | Msa1429550 | 0.826621 | 2.453696e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235100 | MtrunA17_Chr4g0045901 | 56.522 | 230 | 96 | 2 | 11 | 236 | 19 | 248 | 3.96e-72 | 221 |
| Msa0235100 | MtrunA17_Chr2g0283714 | 68.987 | 158 | 9 | 1 | 99 | 256 | 16 | 133 | 1.16e-67 | 205 |
| Msa0235100 | MtrunA17_Chr4g0041051 | 47.727 | 220 | 109 | 4 | 19 | 234 | 21 | 238 | 1.40e-53 | 174 |
| Msa0235100 | MtrunA17_Chr2g0325521 | 49.268 | 205 | 98 | 3 | 29 | 229 | 23 | 225 | 1.38e-52 | 171 |
| Msa0235100 | MtrunA17_Chr7g0255961 | 37.500 | 176 | 101 | 3 | 62 | 233 | 70 | 240 | 2.45e-30 | 113 |
| Msa0235100 | MtrunA17_Chr3g0113721 | 40.909 | 176 | 84 | 5 | 67 | 228 | 39 | 208 | 1.32e-28 | 108 |
| Msa0235100 | MtrunA17_Chr1g0198801 | 43.195 | 169 | 83 | 3 | 63 | 224 | 154 | 316 | 1.92e-28 | 110 |
| Msa0235100 | MtrunA17_Chr5g0412371 | 37.857 | 140 | 80 | 2 | 56 | 189 | 34 | 172 | 3.77e-23 | 93.6 |
| Msa0235100 | MtrunA17_Chr5g0427361 | 37.654 | 162 | 74 | 2 | 63 | 197 | 33 | 194 | 3.14e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235100 | AT3G56770.1 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 8.26e-31 | 114 |
| Msa0235100 | AT2G40200.1 | 43.846 | 130 | 67 | 1 | 69 | 192 | 65 | 194 | 3.37e-30 | 113 |
| Msa0235100 | AT1G68810.1 | 43.353 | 173 | 92 | 4 | 56 | 224 | 164 | 334 | 1.72e-28 | 111 |
| Msa0235100 | AT2G41130.1 | 34.529 | 223 | 130 | 5 | 17 | 228 | 11 | 228 | 5.56e-27 | 105 |
| Msa0235100 | AT3G25710.1 | 44.118 | 136 | 73 | 2 | 56 | 189 | 122 | 256 | 1.68e-24 | 100 |
| Msa0235100 | AT4G38070.1 | 34.959 | 123 | 76 | 2 | 66 | 188 | 91 | 209 | 4.39e-17 | 78.6 |
Find 45 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACTATGTCAACTTAT+TGG | 0.179749 | 2_2:-7846685 | Msa0235100:CDS |
| CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | 2_2:-7846984 | Msa0235100:CDS |
| ATCAACAAACTCATTGGTTT+TGG | 0.255474 | 2_2:-7848638 | Msa0235100:CDS |
| CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | 2_2:+7846820 | None:intergenic |
| AATGCCACTTCATATAGATT+TGG | 0.335342 | 2_2:-7848694 | Msa0235100:CDS |
| TAGTGGCTCTGAAGAATCAT+AGG | 0.340919 | 2_2:-7848537 | Msa0235100:CDS |
| TGATGCTAACAAAACTTTAG+TGG | 0.343142 | 2_2:-7848554 | Msa0235100:CDS |
| AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | 2_2:-7848502 | Msa0235100:CDS |
| AAGTCCCCTTCAATAATTAA+TGG | 0.357901 | 2_2:-7848592 | Msa0235100:CDS |
| TGATAAACTTCAACTACAAT+TGG | 0.375139 | 2_2:-7846788 | Msa0235100:CDS |
| CCAGTACAGAACTCAGTTCC+TGG | 0.377817 | 2_2:+7846650 | None:intergenic |
| TTCTCTCCATTAATTATTGA+AGG | 0.380219 | 2_2:+7848586 | None:intergenic |
| AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | 2_2:-7846886 | Msa0235100:CDS |
| AAGGGAAGAAATATCAACTT+TGG | 0.396844 | 2_2:-7846764 | Msa0235100:CDS |
| AAATATCAACTTTGGGAGAC+AGG | 0.404598 | 2_2:-7846756 | Msa0235100:CDS |
| TTCACTTCATCATCATCTGT+TGG | 0.414183 | 2_2:+7846907 | None:intergenic |
| GTTTGTATCAACAAACTCAT+TGG | 0.426459 | 2_2:-7848644 | Msa0235100:CDS |
| AGGGAAGAAATATCAACTTT+GGG | 0.445016 | 2_2:-7846763 | Msa0235100:CDS |
| AACTTCAACTACAATTGGTA+AGG | 0.473092 | 2_2:-7846783 | Msa0235100:CDS |
| CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | 2_2:-7846650 | Msa0235100:CDS |
| TATTATACCTTTGGAGAGGA+GGG | 0.509382 | 2_2:+7848451 | None:intergenic |
| ACTGAGTTCTGTACTGGAAA+GGG | 0.515094 | 2_2:-7846644 | Msa0235100:CDS |
| ATTCTAGCTCTGATATTTCG+AGG | 0.523502 | 2_2:-7848726 | Msa0235100:CDS |
| TCTCTCCATTAATTATTGAA+GGG | 0.524641 | 2_2:+7848587 | None:intergenic |
| CTCTCCATTAATTATTGAAG+GGG | 0.530776 | 2_2:+7848588 | None:intergenic |
| CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | 2_2:-7848666 | Msa0235100:CDS |
| TTATTATACCTTTGGAGAGG+AGG | 0.544800 | 2_2:+7848450 | None:intergenic |
| AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | 2_2:-7846645 | Msa0235100:CDS |
| CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | 2_2:-7846992 | Msa0235100:CDS |
| AGTGGCTCTGAAGAATCATA+GGG | 0.564496 | 2_2:-7848536 | Msa0235100:CDS |
| AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | 2_2:-7846940 | Msa0235100:CDS |
| ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | 2_2:-7848458 | Msa0235100:intron |
| AGCACCAAATCTATATGAAG+TGG | 0.573695 | 2_2:+7848690 | None:intergenic |
| TGCATCTGTGTGCAAAGATG+TGG | 0.579396 | 2_2:+7846589 | None:intergenic |
| AATATCAACTTTGGGAGACA+GGG | 0.583527 | 2_2:-7846755 | Msa0235100:CDS |
| TATTGGAAATAATGTTCACC+AGG | 0.592874 | 2_2:-7846668 | Msa0235100:CDS |
| GGAAAGGGCTTCTACCTCGA+TGG | 0.594118 | 2_2:-7846629 | Msa0235100:CDS |
| TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | 2_2:-7848667 | Msa0235100:CDS |
| AGATTATTATACCTTTGGAG+AGG | 0.615783 | 2_2:+7848447 | None:intergenic |
| ACTTCAACTACAATTGGTAA+GGG | 0.620942 | 2_2:-7846782 | Msa0235100:CDS |
| GTTGAACCATGTGAAAATGG+TGG | 0.637388 | 2_2:-7846883 | Msa0235100:CDS |
| GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | 2_2:+7848464 | None:intergenic |
| GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | 2_2:-7848670 | Msa0235100:CDS |
| AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | 2_2:-7848525 | Msa0235100:CDS |
| TCTTAACGAGTAGTCCATCG+AGG | 0.786772 | 2_2:+7846615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAATATGAAAAGAA+AGG | + | chr2_2:7846853-7846872 | None:intergenic | 10.0% |
| !! | TATAAAAAATATGAAAAGAA+AGG | + | chr2_2:7846853-7846872 | None:intergenic | 10.0% |
| !!! | ACTTCGTTATATTTTTTTAA+GGG | - | chr2_2:7846902-7846921 | Msa0235100:CDS | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | - | chr2_2:7847070-7847089 | Msa0235100:intron | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | - | chr2_2:7847963-7847982 | Msa0235100:intron | 15.0% |
| !!! | ACTTCGTTATATTTTTTTAA+GGG | - | chr2_2:7846902-7846921 | Msa0235100:CDS | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | - | chr2_2:7847070-7847089 | Msa0235100:intron | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | - | chr2_2:7847963-7847982 | Msa0235100:intron | 15.0% |
| !!! | CACTTCGTTATATTTTTTTA+AGG | - | chr2_2:7846901-7846920 | Msa0235100:CDS | 20.0% |
| !! | TATCTCTTTAAATATCTTTG+TGG | - | chr2_2:7846957-7846976 | Msa0235100:CDS | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | + | chr2_2:7847024-7847043 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | - | chr2_2:7847266-7847285 | Msa0235100:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | - | chr2_2:7847708-7847727 | Msa0235100:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | - | chr2_2:7847966-7847985 | Msa0235100:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | - | chr2_2:7847967-7847986 | Msa0235100:intron | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | - | chr2_2:7848232-7848251 | Msa0235100:intron | 20.0% |
| !!! | CACTTCGTTATATTTTTTTA+AGG | - | chr2_2:7846901-7846920 | Msa0235100:CDS | 20.0% |
| !! | TATCTCTTTAAATATCTTTG+TGG | - | chr2_2:7846957-7846976 | Msa0235100:CDS | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | + | chr2_2:7847024-7847043 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | - | chr2_2:7847266-7847285 | Msa0235100:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | - | chr2_2:7847708-7847727 | Msa0235100:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | - | chr2_2:7847966-7847985 | Msa0235100:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | - | chr2_2:7847967-7847986 | Msa0235100:intron | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | - | chr2_2:7848232-7848251 | Msa0235100:intron | 20.0% |
| ! | TCTCTCCATTAATTATTGAA+GGG | + | chr2_2:7846689-7846708 | None:intergenic | 25.0% |
| ! | TTCTCTCCATTAATTATTGA+AGG | + | chr2_2:7846690-7846709 | None:intergenic | 25.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | - | chr2_2:7846771-7846790 | Msa0235100:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | + | chr2_2:7846834-7846853 | None:intergenic | 25.0% |
| !! | TTATAAACATGTTTTACCGA+TGG | - | chr2_2:7846994-7847013 | Msa0235100:CDS | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | + | chr2_2:7847461-7847480 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | + | chr2_2:7847771-7847790 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | + | chr2_2:7847772-7847791 | None:intergenic | 25.0% |
| ! | TAACAAATGATTCTTAGTTG+TGG | - | chr2_2:7847816-7847835 | Msa0235100:intron | 25.0% |
| ! | AACAAATGATTCTTAGTTGT+GGG | - | chr2_2:7847817-7847836 | Msa0235100:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | - | chr2_2:7848485-7848504 | Msa0235100:CDS | 25.0% |
| ! | ATTGAACTATGTCAACTTAT+TGG | - | chr2_2:7848588-7848607 | Msa0235100:CDS | 25.0% |
| ! | TCTCTCCATTAATTATTGAA+GGG | + | chr2_2:7846689-7846708 | None:intergenic | 25.0% |
| ! | TTCTCTCCATTAATTATTGA+AGG | + | chr2_2:7846690-7846709 | None:intergenic | 25.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | - | chr2_2:7846771-7846790 | Msa0235100:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | + | chr2_2:7846834-7846853 | None:intergenic | 25.0% |
| !! | TTATAAACATGTTTTACCGA+TGG | - | chr2_2:7846994-7847013 | Msa0235100:CDS | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | + | chr2_2:7847461-7847480 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | + | chr2_2:7847771-7847790 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | + | chr2_2:7847772-7847791 | None:intergenic | 25.0% |
| ! | TAACAAATGATTCTTAGTTG+TGG | - | chr2_2:7847816-7847835 | Msa0235100:intron | 25.0% |
| ! | AACAAATGATTCTTAGTTGT+GGG | - | chr2_2:7847817-7847836 | Msa0235100:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | - | chr2_2:7848485-7848504 | Msa0235100:CDS | 25.0% |
| ! | ATTGAACTATGTCAACTTAT+TGG | - | chr2_2:7848588-7848607 | Msa0235100:CDS | 25.0% |
| ! | AATGCCACTTCATATAGATT+TGG | - | chr2_2:7846579-7846598 | Msa0235100:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | - | chr2_2:7846629-7846648 | Msa0235100:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | - | chr2_2:7846635-7846654 | Msa0235100:CDS | 30.0% |
| AAGTCCCCTTCAATAATTAA+TGG | - | chr2_2:7846681-7846700 | Msa0235100:CDS | 30.0% | |
| CTCTCCATTAATTATTGAAG+GGG | + | chr2_2:7846688-7846707 | None:intergenic | 30.0% | |
| TGATGCTAACAAAACTTTAG+TGG | - | chr2_2:7846719-7846738 | Msa0235100:CDS | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | + | chr2_2:7846829-7846848 | None:intergenic | 30.0% |
| AAGTTCAATTGGTAAACCAT+CGG | + | chr2_2:7847013-7847032 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | - | chr2_2:7847077-7847096 | Msa0235100:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | - | chr2_2:7847323-7847342 | Msa0235100:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | - | chr2_2:7847324-7847343 | Msa0235100:intron | 30.0% | |
| ATTGAAATTCATGCAGCATT+GGG | + | chr2_2:7847378-7847397 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | - | chr2_2:7847455-7847474 | Msa0235100:intron | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | - | chr2_2:7847630-7847649 | Msa0235100:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | + | chr2_2:7847658-7847677 | None:intergenic | 30.0% |
| AAGTCAACTATATAAGGTTG+TGG | - | chr2_2:7847661-7847680 | Msa0235100:intron | 30.0% | |
| ! | TTTTGCAGATTTATCTTCGA+CGG | - | chr2_2:7847744-7847763 | Msa0235100:intron | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | + | chr2_2:7847876-7847895 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | + | chr2_2:7847877-7847896 | None:intergenic | 30.0% |
| ACCAACCATTTAATAATCGT+AGG | - | chr2_2:7848037-7848056 | Msa0235100:intron | 30.0% | |
| TCCTACGATTATTAAATGGT+TGG | + | chr2_2:7848041-7848060 | None:intergenic | 30.0% | |
| CATGTCCTACGATTATTAAA+TGG | + | chr2_2:7848045-7848064 | None:intergenic | 30.0% | |
| TATGCGTTAGGGTTTAATAT+CGG | - | chr2_2:7848111-7848130 | Msa0235100:intron | 30.0% | |
| AAAGTTGAACCATGTGAAAA+TGG | - | chr2_2:7848387-7848406 | Msa0235100:intron | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | - | chr2_2:7848490-7848509 | Msa0235100:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | - | chr2_2:7848491-7848510 | Msa0235100:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | - | chr2_2:7848509-7848528 | Msa0235100:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | - | chr2_2:7848510-7848529 | Msa0235100:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | - | chr2_2:7848605-7848624 | Msa0235100:CDS | 30.0% | |
| ! | AATGCCACTTCATATAGATT+TGG | - | chr2_2:7846579-7846598 | Msa0235100:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | - | chr2_2:7846629-7846648 | Msa0235100:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | - | chr2_2:7846635-7846654 | Msa0235100:CDS | 30.0% |
| AAGTCCCCTTCAATAATTAA+TGG | - | chr2_2:7846681-7846700 | Msa0235100:CDS | 30.0% | |
| CTCTCCATTAATTATTGAAG+GGG | + | chr2_2:7846688-7846707 | None:intergenic | 30.0% | |
| TGATGCTAACAAAACTTTAG+TGG | - | chr2_2:7846719-7846738 | Msa0235100:CDS | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | + | chr2_2:7846829-7846848 | None:intergenic | 30.0% |
| AAGTTCAATTGGTAAACCAT+CGG | + | chr2_2:7847013-7847032 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | - | chr2_2:7847077-7847096 | Msa0235100:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | - | chr2_2:7847323-7847342 | Msa0235100:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | - | chr2_2:7847324-7847343 | Msa0235100:intron | 30.0% | |
| ATTGAAATTCATGCAGCATT+GGG | + | chr2_2:7847378-7847397 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | - | chr2_2:7847455-7847474 | Msa0235100:intron | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | - | chr2_2:7847630-7847649 | Msa0235100:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | + | chr2_2:7847658-7847677 | None:intergenic | 30.0% |
| AAGTCAACTATATAAGGTTG+TGG | - | chr2_2:7847661-7847680 | Msa0235100:intron | 30.0% | |
| ! | TTTTGCAGATTTATCTTCGA+CGG | - | chr2_2:7847744-7847763 | Msa0235100:intron | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | + | chr2_2:7847876-7847895 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | + | chr2_2:7847877-7847896 | None:intergenic | 30.0% |
| ACCAACCATTTAATAATCGT+AGG | - | chr2_2:7848037-7848056 | Msa0235100:intron | 30.0% | |
| TCCTACGATTATTAAATGGT+TGG | + | chr2_2:7848041-7848060 | None:intergenic | 30.0% | |
| CATGTCCTACGATTATTAAA+TGG | + | chr2_2:7848045-7848064 | None:intergenic | 30.0% | |
| TATGCGTTAGGGTTTAATAT+CGG | - | chr2_2:7848111-7848130 | Msa0235100:intron | 30.0% | |
| AAAGTTGAACCATGTGAAAA+TGG | - | chr2_2:7848387-7848406 | Msa0235100:intron | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | - | chr2_2:7848490-7848509 | Msa0235100:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | - | chr2_2:7848491-7848510 | Msa0235100:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | - | chr2_2:7848509-7848528 | Msa0235100:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | - | chr2_2:7848510-7848529 | Msa0235100:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | - | chr2_2:7848605-7848624 | Msa0235100:CDS | 30.0% | |
| !! | ATTCTAGCTCTGATATTTCG+AGG | - | chr2_2:7846547-7846566 | Msa0235100:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | + | chr2_2:7846586-7846605 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | - | chr2_2:7846648-7846667 | Msa0235100:CDS | 35.0% |
| ! | TATTATACCTTTGGAGAGGA+GGG | + | chr2_2:7846825-7846844 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | + | chr2_2:7846826-7846845 | None:intergenic | 35.0% |
| ACACAATGATCGAAGATGAT+TGG | + | chr2_2:7846881-7846900 | None:intergenic | 35.0% | |
| ACAGAGACATTTGATATGCT+CGG | + | chr2_2:7847156-7847175 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | - | chr2_2:7847308-7847327 | Msa0235100:intron | 35.0% | |
| TGATGGAAATACAAGCTATG+GGG | - | chr2_2:7847325-7847344 | Msa0235100:intron | 35.0% | |
| CATTGAAATTCATGCAGCAT+TGG | + | chr2_2:7847379-7847398 | None:intergenic | 35.0% | |
| CTTTAACTCTCAGAATGTGT+TGG | + | chr2_2:7847582-7847601 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | - | chr2_2:7847615-7847634 | Msa0235100:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | + | chr2_2:7847631-7847650 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | - | chr2_2:7847629-7847648 | Msa0235100:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | - | chr2_2:7847655-7847674 | Msa0235100:intron | 35.0% | |
| TATTAATAGCTGTCAACAGC+TGG | - | chr2_2:7847905-7847924 | Msa0235100:intron | 35.0% | |
| TAACTTTACCTGACCAATGA+AGG | - | chr2_2:7848005-7848024 | Msa0235100:intron | 35.0% | |
| ! | TAACCTACGCTTTGAATGAA+AGG | - | chr2_2:7848072-7848091 | Msa0235100:intron | 35.0% |
| ! | TCTGGTTTCTAATATGCGTT+AGG | - | chr2_2:7848099-7848118 | Msa0235100:intron | 35.0% |
| CTGGTTTCTAATATGCGTTA+GGG | - | chr2_2:7848100-7848119 | Msa0235100:intron | 35.0% | |
| !! | GTCATTTACGATGTCGATTT+CGG | - | chr2_2:7848186-7848205 | Msa0235100:intron | 35.0% |
| CTGTTATTAATGGTAGCTGA+TGG | - | chr2_2:7848242-7848261 | Msa0235100:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | - | chr2_2:7848257-7848276 | Msa0235100:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | - | chr2_2:7848289-7848308 | Msa0235100:intron | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | - | chr2_2:7848333-7848352 | Msa0235100:intron | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | + | chr2_2:7848369-7848388 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | + | chr2_2:7848399-7848418 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | + | chr2_2:7848456-7848475 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | - | chr2_2:7848517-7848536 | Msa0235100:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | - | chr2_2:7848518-7848537 | Msa0235100:CDS | 35.0% |
| !! | ATTCTAGCTCTGATATTTCG+AGG | - | chr2_2:7846547-7846566 | Msa0235100:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | + | chr2_2:7846586-7846605 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | - | chr2_2:7846648-7846667 | Msa0235100:CDS | 35.0% |
| ! | TATTATACCTTTGGAGAGGA+GGG | + | chr2_2:7846825-7846844 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | + | chr2_2:7846826-7846845 | None:intergenic | 35.0% |
| ACACAATGATCGAAGATGAT+TGG | + | chr2_2:7846881-7846900 | None:intergenic | 35.0% | |
| ACAGAGACATTTGATATGCT+CGG | + | chr2_2:7847156-7847175 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | - | chr2_2:7847308-7847327 | Msa0235100:intron | 35.0% | |
| TGATGGAAATACAAGCTATG+GGG | - | chr2_2:7847325-7847344 | Msa0235100:intron | 35.0% | |
| CATTGAAATTCATGCAGCAT+TGG | + | chr2_2:7847379-7847398 | None:intergenic | 35.0% | |
| CTTTAACTCTCAGAATGTGT+TGG | + | chr2_2:7847582-7847601 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | - | chr2_2:7847615-7847634 | Msa0235100:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | + | chr2_2:7847631-7847650 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | - | chr2_2:7847629-7847648 | Msa0235100:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | - | chr2_2:7847655-7847674 | Msa0235100:intron | 35.0% | |
| TATTAATAGCTGTCAACAGC+TGG | - | chr2_2:7847905-7847924 | Msa0235100:intron | 35.0% | |
| TAACTTTACCTGACCAATGA+AGG | - | chr2_2:7848005-7848024 | Msa0235100:intron | 35.0% | |
| ! | TAACCTACGCTTTGAATGAA+AGG | - | chr2_2:7848072-7848091 | Msa0235100:intron | 35.0% |
| ! | TCTGGTTTCTAATATGCGTT+AGG | - | chr2_2:7848099-7848118 | Msa0235100:intron | 35.0% |
| CTGGTTTCTAATATGCGTTA+GGG | - | chr2_2:7848100-7848119 | Msa0235100:intron | 35.0% | |
| !! | GTCATTTACGATGTCGATTT+CGG | - | chr2_2:7848186-7848205 | Msa0235100:intron | 35.0% |
| CTGTTATTAATGGTAGCTGA+TGG | - | chr2_2:7848242-7848261 | Msa0235100:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | - | chr2_2:7848257-7848276 | Msa0235100:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | - | chr2_2:7848289-7848308 | Msa0235100:intron | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | - | chr2_2:7848333-7848352 | Msa0235100:intron | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | + | chr2_2:7848369-7848388 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | + | chr2_2:7848399-7848418 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | + | chr2_2:7848456-7848475 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | - | chr2_2:7848517-7848536 | Msa0235100:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | - | chr2_2:7848518-7848537 | Msa0235100:CDS | 35.0% |
| GCTTCAAATGAGACTTCAAG+AGG | - | chr2_2:7846603-7846622 | Msa0235100:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | - | chr2_2:7846606-7846625 | Msa0235100:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | - | chr2_2:7846607-7846626 | Msa0235100:CDS | 40.0% | |
| !! | TAGTGGCTCTGAAGAATCAT+AGG | - | chr2_2:7846736-7846755 | Msa0235100:CDS | 40.0% |
| !! | AGTGGCTCTGAAGAATCATA+GGG | - | chr2_2:7846737-7846756 | Msa0235100:CDS | 40.0% |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | - | chr2_2:7847108-7847127 | Msa0235100:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | + | chr2_2:7847155-7847174 | None:intergenic | 40.0% | |
| ! | AGAATATTCAGCTGGTGATG+TGG | + | chr2_2:7847851-7847870 | None:intergenic | 40.0% |
| ACATCACCAGCTGAATATTC+TGG | - | chr2_2:7847850-7847869 | Msa0235100:intron | 40.0% | |
| ACCTGACCAATGAAGGAATT+AGG | - | chr2_2:7848012-7848031 | Msa0235100:intron | 40.0% | |
| TGGTTGCCTAATTCCTTCAT+TGG | + | chr2_2:7848021-7848040 | None:intergenic | 40.0% | |
| ! | CTTTGAATGAAAGGCGTATC+TGG | - | chr2_2:7848081-7848100 | Msa0235100:intron | 40.0% |
| CAAAGCAACTTTACTAGCTG+AGG | - | chr2_2:7848281-7848300 | Msa0235100:intron | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | - | chr2_2:7848390-7848409 | Msa0235100:intron | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | - | chr2_2:7848628-7848647 | Msa0235100:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | - | chr2_2:7848629-7848648 | Msa0235100:CDS | 40.0% | |
| GCTTCAAATGAGACTTCAAG+AGG | - | chr2_2:7846603-7846622 | Msa0235100:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | - | chr2_2:7846606-7846625 | Msa0235100:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | - | chr2_2:7846607-7846626 | Msa0235100:CDS | 40.0% | |
| !! | TAGTGGCTCTGAAGAATCAT+AGG | - | chr2_2:7846736-7846755 | Msa0235100:CDS | 40.0% |
| !! | AGTGGCTCTGAAGAATCATA+GGG | - | chr2_2:7846737-7846756 | Msa0235100:CDS | 40.0% |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | - | chr2_2:7847108-7847127 | Msa0235100:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | + | chr2_2:7847155-7847174 | None:intergenic | 40.0% | |
| ! | AGAATATTCAGCTGGTGATG+TGG | + | chr2_2:7847851-7847870 | None:intergenic | 40.0% |
| ACATCACCAGCTGAATATTC+TGG | - | chr2_2:7847850-7847869 | Msa0235100:intron | 40.0% | |
| ACCTGACCAATGAAGGAATT+AGG | - | chr2_2:7848012-7848031 | Msa0235100:intron | 40.0% | |
| TGGTTGCCTAATTCCTTCAT+TGG | + | chr2_2:7848021-7848040 | None:intergenic | 40.0% | |
| ! | CTTTGAATGAAAGGCGTATC+TGG | - | chr2_2:7848081-7848100 | Msa0235100:intron | 40.0% |
| CAAAGCAACTTTACTAGCTG+AGG | - | chr2_2:7848281-7848300 | Msa0235100:intron | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | - | chr2_2:7848390-7848409 | Msa0235100:intron | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | - | chr2_2:7848628-7848647 | Msa0235100:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | - | chr2_2:7848629-7848648 | Msa0235100:CDS | 40.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | - | chr2_2:7846748-7846767 | Msa0235100:CDS | 45.0% | |
| ! | CTCTCAGAATGTGTTGGTGA+TGG | + | chr2_2:7847576-7847595 | None:intergenic | 45.0% |
| GCCTAATTCCTTCATTGGTC+AGG | + | chr2_2:7848016-7848035 | None:intergenic | 45.0% | |
| ACGCCTTTCATTCAAAGCGT+AGG | + | chr2_2:7848078-7848097 | None:intergenic | 45.0% | |
| TCTTAACGAGTAGTCCATCG+AGG | + | chr2_2:7848661-7848680 | None:intergenic | 45.0% | |
| TGCATCTGTGTGCAAAGATG+TGG | + | chr2_2:7848687-7848706 | None:intergenic | 45.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | - | chr2_2:7846748-7846767 | Msa0235100:CDS | 45.0% | |
| ! | CTCTCAGAATGTGTTGGTGA+TGG | + | chr2_2:7847576-7847595 | None:intergenic | 45.0% |
| GCCTAATTCCTTCATTGGTC+AGG | + | chr2_2:7848016-7848035 | None:intergenic | 45.0% | |
| ACGCCTTTCATTCAAAGCGT+AGG | + | chr2_2:7848078-7848097 | None:intergenic | 45.0% | |
| TCTTAACGAGTAGTCCATCG+AGG | + | chr2_2:7848661-7848680 | None:intergenic | 45.0% | |
| TGCATCTGTGTGCAAAGATG+TGG | + | chr2_2:7848687-7848706 | None:intergenic | 45.0% | |
| !! | TAAACATTATAATTAAATTA+AGG | - | chr2_2:7847603-7847622 | Msa0235100:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | - | chr2_2:7847604-7847623 | Msa0235100:intron | 5.0% |
| !! | TAAACATTATAATTAAATTA+AGG | - | chr2_2:7847603-7847622 | Msa0235100:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | - | chr2_2:7847604-7847623 | Msa0235100:intron | 5.0% |
| ACTTGTTCCCTCCTCTCCAA+AGG | - | chr2_2:7846815-7846834 | Msa0235100:CDS | 50.0% | |
| TACAAGCTATGGGGCAGAAC+TGG | - | chr2_2:7847334-7847353 | Msa0235100:intron | 50.0% | |
| TCTTCGACGGTCCCAAACTA+AGG | - | chr2_2:7847757-7847776 | Msa0235100:intron | 50.0% | |
| TGAGGGCCAGAATATTCAGC+TGG | + | chr2_2:7847859-7847878 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | + | chr2_2:7848626-7848645 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | - | chr2_2:7848623-7848642 | Msa0235100:CDS | 50.0% | |
| ACTTGTTCCCTCCTCTCCAA+AGG | - | chr2_2:7846815-7846834 | Msa0235100:CDS | 50.0% | |
| TACAAGCTATGGGGCAGAAC+TGG | - | chr2_2:7847334-7847353 | Msa0235100:intron | 50.0% | |
| TCTTCGACGGTCCCAAACTA+AGG | - | chr2_2:7847757-7847776 | Msa0235100:intron | 50.0% | |
| TGAGGGCCAGAATATTCAGC+TGG | + | chr2_2:7847859-7847878 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | + | chr2_2:7848626-7848645 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | - | chr2_2:7848623-7848642 | Msa0235100:CDS | 50.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | + | chr2_2:7846812-7846831 | None:intergenic | 55.0% | |
| ! | CAGCTGGTGATGTGGAGTGT+GGG | + | chr2_2:7847843-7847862 | None:intergenic | 55.0% |
| ! | TCAGCTGGTGATGTGGAGTG+TGG | + | chr2_2:7847844-7847863 | None:intergenic | 55.0% |
| GGAAAGGGCTTCTACCTCGA+TGG | - | chr2_2:7848644-7848663 | Msa0235100:CDS | 55.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | + | chr2_2:7846812-7846831 | None:intergenic | 55.0% | |
| ! | CAGCTGGTGATGTGGAGTGT+GGG | + | chr2_2:7847843-7847862 | None:intergenic | 55.0% |
| ! | TCAGCTGGTGATGTGGAGTG+TGG | + | chr2_2:7847844-7847863 | None:intergenic | 55.0% |
| GGAAAGGGCTTCTACCTCGA+TGG | - | chr2_2:7848644-7848663 | Msa0235100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 7846543 | 7848752 | 7846543 | ID=Msa0235100;Name=Msa0235100 |
| chr2_2 | mRNA | 7846543 | 7848752 | 7846543 | ID=Msa0235100-mRNA-1;Parent=Msa0235100;Name=Msa0235100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|256 |
| chr2_2 | exon | 7848459 | 7848752 | 7848459 | ID=Msa0235100-mRNA-1:exon:3446;Parent=Msa0235100-mRNA-1 |
| chr2_2 | exon | 7846543 | 7847019 | 7846543 | ID=Msa0235100-mRNA-1:exon:3445;Parent=Msa0235100-mRNA-1 |
| chr2_2 | CDS | 7848459 | 7848752 | 7848459 | ID=Msa0235100-mRNA-1:cds;Parent=Msa0235100-mRNA-1 |
| chr2_2 | CDS | 7846543 | 7847019 | 7846543 | ID=Msa0235100-mRNA-1:cds;Parent=Msa0235100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
