Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313830 | XP_013462544.1 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 5.91e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313830 | sp|Q9LET0|BH107_ARATH | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 1.20e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0313830 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062010 | Msa0313830 | 0.825187 | 5.373142e-54 | -8.615850e-47 |
| Msa0108350 | Msa0313830 | 0.805570 | 1.252660e-49 | -8.615850e-47 |
| Msa0222140 | Msa0313830 | 0.893593 | 5.440592e-75 | -8.615850e-47 |
| Msa0235100 | Msa0313830 | 0.833937 | 4.001524e-56 | -8.615850e-47 |
| Msa0273610 | Msa0313830 | 0.966843 | 1.826232e-126 | -8.615850e-47 |
| Msa0277520 | Msa0313830 | 0.804026 | 2.631417e-49 | -8.615850e-47 |
| Msa0281190 | Msa0313830 | 0.802380 | 5.765623e-49 | -8.615850e-47 |
| Msa0313830 | Msa0366510 | 0.802160 | 6.399295e-49 | -8.615850e-47 |
| Msa0313830 | Msa0390160 | 0.802137 | 6.471830e-49 | -8.615850e-47 |
| Msa0313830 | Msa0448190 | 0.809313 | 2.012584e-50 | -8.615850e-47 |
| Msa0313830 | Msa0491780 | 0.800423 | 1.451540e-48 | -8.615850e-47 |
| Msa0313830 | Msa0496060 | 0.802783 | 4.762990e-49 | -8.615850e-47 |
| Msa0313830 | Msa0535570 | 0.811790 | 5.870793e-51 | -8.615850e-47 |
| Msa0313830 | Msa0591490 | 0.808550 | 2.930860e-50 | -8.615850e-47 |
| Msa0313830 | Msa0643840 | 0.803681 | 3.103747e-49 | -8.615850e-47 |
| Msa0313830 | Msa0956450 | 0.803599 | 3.227714e-49 | -8.615850e-47 |
| Msa0313830 | Msa1022510 | 0.803245 | 3.821357e-49 | -8.615850e-47 |
| Msa0313830 | Msa1115980 | 0.801601 | 8.337350e-49 | -8.615850e-47 |
| Msa0313830 | Msa1164450 | 0.800536 | 1.376241e-48 | -8.615850e-47 |
| Msa0313830 | Msa1181090 | 0.807806 | 4.222383e-50 | -8.615850e-47 |
| Msa0313830 | Msa1319010 | 0.801983 | 6.958245e-49 | -8.615850e-47 |
| Msa0313830 | Msa1429550 | 0.916813 | 1.133013e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313830 | MtrunA17_Chr4g0045901 | 56.828 | 227 | 94 | 2 | 11 | 233 | 19 | 245 | 7.79e-71 | 218 |
| Msa0313830 | MtrunA17_Chr2g0283714 | 69.620 | 158 | 8 | 1 | 99 | 256 | 16 | 133 | 4.69e-69 | 209 |
| Msa0313830 | MtrunA17_Chr4g0041051 | 47.727 | 220 | 109 | 4 | 19 | 234 | 21 | 238 | 1.47e-53 | 174 |
| Msa0313830 | MtrunA17_Chr2g0325521 | 49.268 | 205 | 98 | 3 | 29 | 229 | 23 | 225 | 1.33e-52 | 171 |
| Msa0313830 | MtrunA17_Chr7g0255961 | 36.957 | 184 | 107 | 3 | 62 | 241 | 70 | 248 | 1.34e-30 | 114 |
| Msa0313830 | MtrunA17_Chr3g0113721 | 38.506 | 174 | 88 | 4 | 67 | 227 | 39 | 206 | 1.69e-28 | 108 |
| Msa0313830 | MtrunA17_Chr1g0198801 | 48.201 | 139 | 65 | 1 | 63 | 194 | 154 | 292 | 2.94e-28 | 110 |
| Msa0313830 | MtrunA17_Chr5g0412371 | 37.857 | 140 | 80 | 2 | 56 | 189 | 34 | 172 | 1.14e-22 | 92.4 |
| Msa0313830 | MtrunA17_Chr5g0427361 | 32.883 | 222 | 118 | 4 | 63 | 254 | 33 | 253 | 3.36e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313830 | AT3G56770.1 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 1.22e-30 | 114 |
| Msa0313830 | AT2G40200.1 | 38.889 | 162 | 91 | 2 | 69 | 224 | 65 | 224 | 6.97e-30 | 112 |
| Msa0313830 | AT1G68810.1 | 43.605 | 172 | 91 | 4 | 56 | 223 | 164 | 333 | 2.87e-28 | 110 |
| Msa0313830 | AT2G41130.1 | 34.529 | 223 | 130 | 5 | 17 | 228 | 11 | 228 | 8.37e-27 | 104 |
| Msa0313830 | AT3G25710.1 | 44.118 | 136 | 73 | 2 | 56 | 189 | 122 | 256 | 2.40e-24 | 100 |
| Msa0313830 | AT4G38070.1 | 34.959 | 123 | 76 | 2 | 66 | 188 | 91 | 209 | 7.11e-17 | 78.2 |
Find 46 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACAATGTCAACTTAT+TGG | 0.161618 | 2_4:-9282282 | Msa0313830:CDS |
| CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | 2_4:-9282581 | Msa0313830:CDS |
| ATCAACAAACTCATTGGTTT+TGG | 0.255474 | 2_4:-9284211 | Msa0313830:CDS |
| CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | 2_4:+9282417 | None:intergenic |
| AAGTCCCCTCCAATAATTAA+TGG | 0.304566 | 2_4:-9284165 | Msa0313830:CDS |
| AATGCCACTTCATATAGATT+TGG | 0.335342 | 2_4:-9284267 | Msa0313830:CDS |
| TAGTGGCTCTGAAGAATCAT+AGG | 0.340919 | 2_4:-9284110 | Msa0313830:CDS |
| TGATGCTAACAAAACTTTAG+TGG | 0.343142 | 2_4:-9284127 | Msa0313830:CDS |
| AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | 2_4:-9284075 | Msa0313830:CDS |
| TGATAAACTTCAACTACAAT+TGG | 0.375139 | 2_4:-9282385 | Msa0313830:CDS |
| CCAGTACAGAACTCAGTTCC+TGG | 0.377817 | 2_4:+9282247 | None:intergenic |
| AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | 2_4:-9282483 | Msa0313830:CDS |
| AAGGGAAGAAATATCAACTT+TGG | 0.396844 | 2_4:-9282361 | Msa0313830:CDS |
| AAATATCAACTTTGGGAGAC+AGG | 0.404598 | 2_4:-9282353 | Msa0313830:CDS |
| TTCACTTCATCATCATCTGT+TGG | 0.414183 | 2_4:+9282504 | None:intergenic |
| GTTTGTATCAACAAACTCAT+TGG | 0.426459 | 2_4:-9284217 | Msa0313830:CDS |
| TTCTCTCCATTAATTATTGG+AGG | 0.433494 | 2_4:+9284159 | None:intergenic |
| AGGGAAGAAATATCAACTTT+GGG | 0.445016 | 2_4:-9282360 | Msa0313830:CDS |
| AACTTCAACTACAATTGGTA+AGG | 0.473092 | 2_4:-9282380 | Msa0313830:CDS |
| CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | 2_4:-9282247 | Msa0313830:CDS |
| ACTGAGTTCTGTACTGGAAA+GGG | 0.489265 | 2_4:-9282241 | Msa0313830:CDS |
| CTCTCCATTAATTATTGGAG+GGG | 0.498785 | 2_4:+9284161 | None:intergenic |
| TATTATACCTTTGGAGAGGA+GGG | 0.509382 | 2_4:+9284024 | None:intergenic |
| ATTCTAGCTCTGATATTTCG+AGG | 0.523502 | 2_4:-9284299 | Msa0313830:CDS |
| CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | 2_4:-9284239 | Msa0313830:CDS |
| TCTCTCCATTAATTATTGGA+GGG | 0.544195 | 2_4:+9284160 | None:intergenic |
| TTATTATACCTTTGGAGAGG+AGG | 0.544800 | 2_4:+9284023 | None:intergenic |
| AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | 2_4:-9282242 | Msa0313830:CDS |
| CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | 2_4:-9282589 | Msa0313830:CDS |
| AGTGGCTCTGAAGAATCATA+GGG | 0.564496 | 2_4:-9284109 | Msa0313830:CDS |
| AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | 2_4:-9282537 | Msa0313830:CDS |
| ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | 2_4:-9284031 | Msa0313830:intron |
| GGAAAGGGTTTCTACCTCGA+TGG | 0.569167 | 2_4:-9282226 | Msa0313830:CDS |
| AGCACCAAATCTATATGAAG+TGG | 0.573695 | 2_4:+9284263 | None:intergenic |
| AATATCAACTTTGGGAGACA+GGG | 0.583527 | 2_4:-9282352 | Msa0313830:CDS |
| TATTGGAAATAATGTTCACC+AGG | 0.592874 | 2_4:-9282265 | Msa0313830:CDS |
| TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | 2_4:-9284240 | Msa0313830:CDS |
| AGATTATTATACCTTTGGAG+AGG | 0.615783 | 2_4:+9284020 | None:intergenic |
| ACTTCAACTACAATTGGTAA+GGG | 0.620942 | 2_4:-9282379 | Msa0313830:CDS |
| ATCAACAAGAGCAAAACTCA+TGG | 0.629280 | 2_4:+9282139 | None:intergenic |
| GTTGAACCATGTGAAAATGG+TGG | 0.637388 | 2_4:-9282480 | Msa0313830:CDS |
| TGCATCTGTTTGCAAAGACG+TGG | 0.639661 | 2_4:+9282186 | None:intergenic |
| GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | 2_4:+9284037 | None:intergenic |
| GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | 2_4:-9284243 | Msa0313830:CDS |
| AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | 2_4:-9284098 | Msa0313830:CDS |
| TCTTAACGAGTAATCCATCG+AGG | 0.765808 | 2_4:+9282212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAAGGATTATTAAA+TGG | + | chr2_4:9283592-9283611 | None:intergenic | 10.0% |
| !!! | CCTTATTTATTTATTTTTTA+AGG | + | chr2_4:9283604-9283623 | None:intergenic | 10.0% |
| !! | CCTTAAAAAATAAATAAATA+AGG | - | chr2_4:9283601-9283620 | Msa0313830:intron | 10.0% |
| !! | AAAAAATAAATAAATAAGGT+AGG | - | chr2_4:9283605-9283624 | Msa0313830:intron | 10.0% |
| !!! | ATTTTTTAAGGATTATTAAA+TGG | + | chr2_4:9283592-9283611 | None:intergenic | 10.0% |
| !!! | CCTTATTTATTTATTTTTTA+AGG | + | chr2_4:9283604-9283623 | None:intergenic | 10.0% |
| !! | CCTTAAAAAATAAATAAATA+AGG | - | chr2_4:9283601-9283620 | Msa0313830:intron | 10.0% |
| !! | AAAAAATAAATAAATAAGGT+AGG | - | chr2_4:9283605-9283624 | Msa0313830:intron | 10.0% |
| !! | TATAAAAAATACGAAAAGAA+AGG | + | chr2_4:9282450-9282469 | None:intergenic | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | - | chr2_4:9282636-9282655 | Msa0313830:intron | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | - | chr2_4:9283510-9283529 | Msa0313830:intron | 15.0% |
| !! | TATAAAAAATACGAAAAGAA+AGG | + | chr2_4:9282450-9282469 | None:intergenic | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | - | chr2_4:9282636-9282655 | Msa0313830:intron | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | - | chr2_4:9283510-9283529 | Msa0313830:intron | 15.0% |
| !!! | TTTTTCTCTCCATTAATTAT+TGG | + | chr2_4:9282290-9282309 | None:intergenic | 20.0% |
| !! | TATCTCTTTAAATATCTTTG+TGG | - | chr2_4:9282523-9282542 | Msa0313830:CDS | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | + | chr2_4:9282590-9282609 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | - | chr2_4:9282832-9282851 | Msa0313830:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | - | chr2_4:9283255-9283274 | Msa0313830:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | - | chr2_4:9283513-9283532 | Msa0313830:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | - | chr2_4:9283514-9283533 | Msa0313830:intron | 20.0% |
| !! | TTTAAGGATTATTAAATGGT+TGG | + | chr2_4:9283588-9283607 | None:intergenic | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | - | chr2_4:9283805-9283824 | Msa0313830:intron | 20.0% |
| !!! | TTTTTCTCTCCATTAATTAT+TGG | + | chr2_4:9282290-9282309 | None:intergenic | 20.0% |
| !! | TATCTCTTTAAATATCTTTG+TGG | - | chr2_4:9282523-9282542 | Msa0313830:CDS | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | + | chr2_4:9282590-9282609 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | - | chr2_4:9282832-9282851 | Msa0313830:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | - | chr2_4:9283255-9283274 | Msa0313830:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | - | chr2_4:9283513-9283532 | Msa0313830:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | - | chr2_4:9283514-9283533 | Msa0313830:intron | 20.0% |
| !! | TTTAAGGATTATTAAATGGT+TGG | + | chr2_4:9283588-9283607 | None:intergenic | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | - | chr2_4:9283805-9283824 | Msa0313830:intron | 20.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | - | chr2_4:9282368-9282387 | Msa0313830:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | + | chr2_4:9282431-9282450 | None:intergenic | 25.0% |
| !! | TTATAAACATGTTTTACCGA+TGG | - | chr2_4:9282560-9282579 | Msa0313830:CDS | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | + | chr2_4:9283028-9283047 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | + | chr2_4:9283318-9283337 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | + | chr2_4:9283319-9283338 | None:intergenic | 25.0% |
| ! | TAACAAATGATTCTTAGTTG+TGG | - | chr2_4:9283363-9283382 | Msa0313830:intron | 25.0% |
| ! | AACAAATGATTCTTAGTTGT+GGG | - | chr2_4:9283364-9283383 | Msa0313830:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | - | chr2_4:9284058-9284077 | Msa0313830:CDS | 25.0% |
| ! | ATTGAACAATGTCAACTTAT+TGG | - | chr2_4:9284161-9284180 | Msa0313830:CDS | 25.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | - | chr2_4:9282368-9282387 | Msa0313830:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | + | chr2_4:9282431-9282450 | None:intergenic | 25.0% |
| !! | TTATAAACATGTTTTACCGA+TGG | - | chr2_4:9282560-9282579 | Msa0313830:CDS | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | + | chr2_4:9283028-9283047 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | + | chr2_4:9283318-9283337 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | + | chr2_4:9283319-9283338 | None:intergenic | 25.0% |
| ! | TAACAAATGATTCTTAGTTG+TGG | - | chr2_4:9283363-9283382 | Msa0313830:intron | 25.0% |
| ! | AACAAATGATTCTTAGTTGT+GGG | - | chr2_4:9283364-9283383 | Msa0313830:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | - | chr2_4:9284058-9284077 | Msa0313830:CDS | 25.0% |
| ! | ATTGAACAATGTCAACTTAT+TGG | - | chr2_4:9284161-9284180 | Msa0313830:CDS | 25.0% |
| ! | AATGCCACTTCATATAGATT+TGG | - | chr2_4:9282176-9282195 | Msa0313830:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | - | chr2_4:9282226-9282245 | Msa0313830:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | - | chr2_4:9282232-9282251 | Msa0313830:CDS | 30.0% |
| TCTCTCCATTAATTATTGGA+GGG | + | chr2_4:9282286-9282305 | None:intergenic | 30.0% | |
| TTCTCTCCATTAATTATTGG+AGG | + | chr2_4:9282287-9282306 | None:intergenic | 30.0% | |
| TGATGCTAACAAAACTTTAG+TGG | - | chr2_4:9282316-9282335 | Msa0313830:CDS | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | + | chr2_4:9282426-9282445 | None:intergenic | 30.0% |
| ACACAATGATCGAATATGAT+TGG | + | chr2_4:9282478-9282497 | None:intergenic | 30.0% | |
| AAGTTCAATTGGTAAACCAT+CGG | + | chr2_4:9282579-9282598 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | - | chr2_4:9282643-9282662 | Msa0313830:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | - | chr2_4:9282889-9282908 | Msa0313830:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | - | chr2_4:9282890-9282909 | Msa0313830:intron | 30.0% | |
| TTGAAATTCATGCAGCATTT+GGG | + | chr2_4:9282944-9282963 | None:intergenic | 30.0% | |
| ATTGAAATTCATGCAGCATT+TGG | + | chr2_4:9282945-9282964 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | - | chr2_4:9283022-9283041 | Msa0313830:intron | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | - | chr2_4:9283197-9283216 | Msa0313830:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | + | chr2_4:9283225-9283244 | None:intergenic | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | + | chr2_4:9283423-9283442 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | + | chr2_4:9283424-9283443 | None:intergenic | 30.0% |
| TAACTTTATCTGACCAATGA+AGG | - | chr2_4:9283552-9283571 | Msa0313830:intron | 30.0% | |
| TATGCGTTAGGGTTTAATAT+CGG | - | chr2_4:9283679-9283698 | Msa0313830:intron | 30.0% | |
| !! | GTCATTTACGATGTTGATTT+CGG | - | chr2_4:9283759-9283778 | Msa0313830:intron | 30.0% |
| AAAGTTGAACCATGTGAAAA+TGG | - | chr2_4:9283960-9283979 | Msa0313830:intron | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | - | chr2_4:9284063-9284082 | Msa0313830:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | - | chr2_4:9284064-9284083 | Msa0313830:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | - | chr2_4:9284082-9284101 | Msa0313830:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | - | chr2_4:9284083-9284102 | Msa0313830:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | - | chr2_4:9284178-9284197 | Msa0313830:CDS | 30.0% | |
| ! | AATGCCACTTCATATAGATT+TGG | - | chr2_4:9282176-9282195 | Msa0313830:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | - | chr2_4:9282226-9282245 | Msa0313830:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | - | chr2_4:9282232-9282251 | Msa0313830:CDS | 30.0% |
| TCTCTCCATTAATTATTGGA+GGG | + | chr2_4:9282286-9282305 | None:intergenic | 30.0% | |
| TTCTCTCCATTAATTATTGG+AGG | + | chr2_4:9282287-9282306 | None:intergenic | 30.0% | |
| TGATGCTAACAAAACTTTAG+TGG | - | chr2_4:9282316-9282335 | Msa0313830:CDS | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | + | chr2_4:9282426-9282445 | None:intergenic | 30.0% |
| ACACAATGATCGAATATGAT+TGG | + | chr2_4:9282478-9282497 | None:intergenic | 30.0% | |
| AAGTTCAATTGGTAAACCAT+CGG | + | chr2_4:9282579-9282598 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | - | chr2_4:9282643-9282662 | Msa0313830:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | - | chr2_4:9282889-9282908 | Msa0313830:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | - | chr2_4:9282890-9282909 | Msa0313830:intron | 30.0% | |
| TTGAAATTCATGCAGCATTT+GGG | + | chr2_4:9282944-9282963 | None:intergenic | 30.0% | |
| ATTGAAATTCATGCAGCATT+TGG | + | chr2_4:9282945-9282964 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | - | chr2_4:9283022-9283041 | Msa0313830:intron | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | - | chr2_4:9283197-9283216 | Msa0313830:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | + | chr2_4:9283225-9283244 | None:intergenic | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | + | chr2_4:9283423-9283442 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | + | chr2_4:9283424-9283443 | None:intergenic | 30.0% |
| TAACTTTATCTGACCAATGA+AGG | - | chr2_4:9283552-9283571 | Msa0313830:intron | 30.0% | |
| TATGCGTTAGGGTTTAATAT+CGG | - | chr2_4:9283679-9283698 | Msa0313830:intron | 30.0% | |
| !! | GTCATTTACGATGTTGATTT+CGG | - | chr2_4:9283759-9283778 | Msa0313830:intron | 30.0% |
| AAAGTTGAACCATGTGAAAA+TGG | - | chr2_4:9283960-9283979 | Msa0313830:intron | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | - | chr2_4:9284063-9284082 | Msa0313830:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | - | chr2_4:9284064-9284083 | Msa0313830:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | - | chr2_4:9284082-9284101 | Msa0313830:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | - | chr2_4:9284083-9284102 | Msa0313830:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | - | chr2_4:9284178-9284197 | Msa0313830:CDS | 30.0% | |
| !! | ATTCTAGCTCTGATATTTCG+AGG | - | chr2_4:9282144-9282163 | Msa0313830:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | + | chr2_4:9282183-9282202 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | - | chr2_4:9282245-9282264 | Msa0313830:CDS | 35.0% |
| AAGTCCCCTCCAATAATTAA+TGG | - | chr2_4:9282278-9282297 | Msa0313830:CDS | 35.0% | |
| CTCTCCATTAATTATTGGAG+GGG | + | chr2_4:9282285-9282304 | None:intergenic | 35.0% | |
| ! | TATTATACCTTTGGAGAGGA+GGG | + | chr2_4:9282422-9282441 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | + | chr2_4:9282423-9282442 | None:intergenic | 35.0% |
| ACAGAGACATTTGATATGCT+CGG | + | chr2_4:9282722-9282741 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | - | chr2_4:9282874-9282893 | Msa0313830:intron | 35.0% | |
| TGATGGAAATACAAGCTATG+GGG | - | chr2_4:9282891-9282910 | Msa0313830:intron | 35.0% | |
| CTTTAACTCTCAGAATGTGT+TGG | + | chr2_4:9283149-9283168 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | - | chr2_4:9283182-9283201 | Msa0313830:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | + | chr2_4:9283198-9283217 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | - | chr2_4:9283196-9283215 | Msa0313830:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | - | chr2_4:9283222-9283241 | Msa0313830:intron | 35.0% | |
| TATTAATAGCTGTCAACAGC+TGG | - | chr2_4:9283452-9283471 | Msa0313830:intron | 35.0% | |
| ATCTGACCAATGAAGGAATT+AGG | - | chr2_4:9283559-9283578 | Msa0313830:intron | 35.0% | |
| ! | TCTGGTTTCAAATATGCGTT+AGG | - | chr2_4:9283667-9283686 | Msa0313830:intron | 35.0% |
| CTGGTTTCAAATATGCGTTA+GGG | - | chr2_4:9283668-9283687 | Msa0313830:intron | 35.0% | |
| CTGTTATTAATGGTAGCTGA+TGG | - | chr2_4:9283815-9283834 | Msa0313830:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | - | chr2_4:9283830-9283849 | Msa0313830:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | - | chr2_4:9283862-9283881 | Msa0313830:intron | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | - | chr2_4:9283906-9283925 | Msa0313830:intron | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | + | chr2_4:9283942-9283961 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | + | chr2_4:9283972-9283991 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | + | chr2_4:9284029-9284048 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | - | chr2_4:9284090-9284109 | Msa0313830:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | - | chr2_4:9284091-9284110 | Msa0313830:CDS | 35.0% |
| !! | ATTCTAGCTCTGATATTTCG+AGG | - | chr2_4:9282144-9282163 | Msa0313830:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | + | chr2_4:9282183-9282202 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | - | chr2_4:9282245-9282264 | Msa0313830:CDS | 35.0% |
| AAGTCCCCTCCAATAATTAA+TGG | - | chr2_4:9282278-9282297 | Msa0313830:CDS | 35.0% | |
| CTCTCCATTAATTATTGGAG+GGG | + | chr2_4:9282285-9282304 | None:intergenic | 35.0% | |
| ! | TATTATACCTTTGGAGAGGA+GGG | + | chr2_4:9282422-9282441 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | + | chr2_4:9282423-9282442 | None:intergenic | 35.0% |
| ACAGAGACATTTGATATGCT+CGG | + | chr2_4:9282722-9282741 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | - | chr2_4:9282874-9282893 | Msa0313830:intron | 35.0% | |
| TGATGGAAATACAAGCTATG+GGG | - | chr2_4:9282891-9282910 | Msa0313830:intron | 35.0% | |
| CTTTAACTCTCAGAATGTGT+TGG | + | chr2_4:9283149-9283168 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | - | chr2_4:9283182-9283201 | Msa0313830:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | + | chr2_4:9283198-9283217 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | - | chr2_4:9283196-9283215 | Msa0313830:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | - | chr2_4:9283222-9283241 | Msa0313830:intron | 35.0% | |
| TATTAATAGCTGTCAACAGC+TGG | - | chr2_4:9283452-9283471 | Msa0313830:intron | 35.0% | |
| ATCTGACCAATGAAGGAATT+AGG | - | chr2_4:9283559-9283578 | Msa0313830:intron | 35.0% | |
| ! | TCTGGTTTCAAATATGCGTT+AGG | - | chr2_4:9283667-9283686 | Msa0313830:intron | 35.0% |
| CTGGTTTCAAATATGCGTTA+GGG | - | chr2_4:9283668-9283687 | Msa0313830:intron | 35.0% | |
| CTGTTATTAATGGTAGCTGA+TGG | - | chr2_4:9283815-9283834 | Msa0313830:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | - | chr2_4:9283830-9283849 | Msa0313830:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | - | chr2_4:9283862-9283881 | Msa0313830:intron | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | - | chr2_4:9283906-9283925 | Msa0313830:intron | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | + | chr2_4:9283942-9283961 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | + | chr2_4:9283972-9283991 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | + | chr2_4:9284029-9284048 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | - | chr2_4:9284090-9284109 | Msa0313830:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | - | chr2_4:9284091-9284110 | Msa0313830:CDS | 35.0% |
| GCTTCAAATGAGACTTCAAG+AGG | - | chr2_4:9282200-9282219 | Msa0313830:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | - | chr2_4:9282203-9282222 | Msa0313830:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | - | chr2_4:9282204-9282223 | Msa0313830:CDS | 40.0% | |
| !! | TAGTGGCTCTGAAGAATCAT+AGG | - | chr2_4:9282333-9282352 | Msa0313830:CDS | 40.0% |
| !! | AGTGGCTCTGAAGAATCATA+GGG | - | chr2_4:9282334-9282353 | Msa0313830:CDS | 40.0% |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | - | chr2_4:9282674-9282693 | Msa0313830:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | + | chr2_4:9282721-9282740 | None:intergenic | 40.0% | |
| TCTTCGATAGTCCCAAACTA+AGG | - | chr2_4:9283304-9283323 | Msa0313830:intron | 40.0% | |
| ! | AGAATATTCAGCTGGTGATG+TGG | + | chr2_4:9283398-9283417 | None:intergenic | 40.0% |
| ACATCACCAGCTGAATATTC+TGG | - | chr2_4:9283397-9283416 | Msa0313830:intron | 40.0% | |
| TGGTTGCCTAATTCCTTCAT+TGG | + | chr2_4:9283568-9283587 | None:intergenic | 40.0% | |
| TCATTCAAAGCGTAGGTCAT+AGG | + | chr2_4:9283639-9283658 | None:intergenic | 40.0% | |
| ! | TGACCTACGCTTTGAATGAA+AGG | - | chr2_4:9283640-9283659 | Msa0313830:intron | 40.0% |
| ! | CTTTGAATGAAAGGCGTATC+TGG | - | chr2_4:9283649-9283668 | Msa0313830:intron | 40.0% |
| CAAAGCAACTTTACTAGCTG+AGG | - | chr2_4:9283854-9283873 | Msa0313830:intron | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | - | chr2_4:9283963-9283982 | Msa0313830:intron | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | - | chr2_4:9284201-9284220 | Msa0313830:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | - | chr2_4:9284202-9284221 | Msa0313830:CDS | 40.0% | |
| TCTTAACGAGTAATCCATCG+AGG | + | chr2_4:9284234-9284253 | None:intergenic | 40.0% | |
| GCTTCAAATGAGACTTCAAG+AGG | - | chr2_4:9282200-9282219 | Msa0313830:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | - | chr2_4:9282203-9282222 | Msa0313830:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | - | chr2_4:9282204-9282223 | Msa0313830:CDS | 40.0% | |
| !! | TAGTGGCTCTGAAGAATCAT+AGG | - | chr2_4:9282333-9282352 | Msa0313830:CDS | 40.0% |
| !! | AGTGGCTCTGAAGAATCATA+GGG | - | chr2_4:9282334-9282353 | Msa0313830:CDS | 40.0% |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | - | chr2_4:9282674-9282693 | Msa0313830:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | + | chr2_4:9282721-9282740 | None:intergenic | 40.0% | |
| TCTTCGATAGTCCCAAACTA+AGG | - | chr2_4:9283304-9283323 | Msa0313830:intron | 40.0% | |
| ! | AGAATATTCAGCTGGTGATG+TGG | + | chr2_4:9283398-9283417 | None:intergenic | 40.0% |
| ACATCACCAGCTGAATATTC+TGG | - | chr2_4:9283397-9283416 | Msa0313830:intron | 40.0% | |
| TGGTTGCCTAATTCCTTCAT+TGG | + | chr2_4:9283568-9283587 | None:intergenic | 40.0% | |
| TCATTCAAAGCGTAGGTCAT+AGG | + | chr2_4:9283639-9283658 | None:intergenic | 40.0% | |
| ! | TGACCTACGCTTTGAATGAA+AGG | - | chr2_4:9283640-9283659 | Msa0313830:intron | 40.0% |
| ! | CTTTGAATGAAAGGCGTATC+TGG | - | chr2_4:9283649-9283668 | Msa0313830:intron | 40.0% |
| CAAAGCAACTTTACTAGCTG+AGG | - | chr2_4:9283854-9283873 | Msa0313830:intron | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | - | chr2_4:9283963-9283982 | Msa0313830:intron | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | - | chr2_4:9284201-9284220 | Msa0313830:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | - | chr2_4:9284202-9284221 | Msa0313830:CDS | 40.0% | |
| TCTTAACGAGTAATCCATCG+AGG | + | chr2_4:9284234-9284253 | None:intergenic | 40.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | - | chr2_4:9282345-9282364 | Msa0313830:CDS | 45.0% | |
| ! | CTCTCAGAATGTGTTGGTGA+TGG | + | chr2_4:9283143-9283162 | None:intergenic | 45.0% |
| ACGCCTTTCATTCAAAGCGT+AGG | + | chr2_4:9283646-9283665 | None:intergenic | 45.0% | |
| TGCATCTGTTTGCAAAGACG+TGG | + | chr2_4:9284260-9284279 | None:intergenic | 45.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | - | chr2_4:9282345-9282364 | Msa0313830:CDS | 45.0% | |
| ! | CTCTCAGAATGTGTTGGTGA+TGG | + | chr2_4:9283143-9283162 | None:intergenic | 45.0% |
| ACGCCTTTCATTCAAAGCGT+AGG | + | chr2_4:9283646-9283665 | None:intergenic | 45.0% | |
| TGCATCTGTTTGCAAAGACG+TGG | + | chr2_4:9284260-9284279 | None:intergenic | 45.0% | |
| !! | TAAACATTATAATTAAATTA+AGG | - | chr2_4:9283170-9283189 | Msa0313830:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | - | chr2_4:9283171-9283190 | Msa0313830:intron | 5.0% |
| !! | TAAACATTATAATTAAATTA+AGG | - | chr2_4:9283170-9283189 | Msa0313830:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | - | chr2_4:9283171-9283190 | Msa0313830:intron | 5.0% |
| ACTTGTTCCCTCCTCTCCAA+AGG | - | chr2_4:9282412-9282431 | Msa0313830:CDS | 50.0% | |
| TACAAGCTATGGGGCAGAAC+TGG | - | chr2_4:9282900-9282919 | Msa0313830:intron | 50.0% | |
| TGAGGGCCAGAATATTCAGC+TGG | + | chr2_4:9283406-9283425 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | + | chr2_4:9284199-9284218 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | - | chr2_4:9284196-9284215 | Msa0313830:CDS | 50.0% | |
| GGAAAGGGTTTCTACCTCGA+TGG | - | chr2_4:9284217-9284236 | Msa0313830:CDS | 50.0% | |
| ACTTGTTCCCTCCTCTCCAA+AGG | - | chr2_4:9282412-9282431 | Msa0313830:CDS | 50.0% | |
| TACAAGCTATGGGGCAGAAC+TGG | - | chr2_4:9282900-9282919 | Msa0313830:intron | 50.0% | |
| TGAGGGCCAGAATATTCAGC+TGG | + | chr2_4:9283406-9283425 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | + | chr2_4:9284199-9284218 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | - | chr2_4:9284196-9284215 | Msa0313830:CDS | 50.0% | |
| GGAAAGGGTTTCTACCTCGA+TGG | - | chr2_4:9284217-9284236 | Msa0313830:CDS | 50.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | + | chr2_4:9282409-9282428 | None:intergenic | 55.0% | |
| ! | CAGCTGGTGATGTGGAGTGT+GGG | + | chr2_4:9283390-9283409 | None:intergenic | 55.0% |
| ! | TCAGCTGGTGATGTGGAGTG+TGG | + | chr2_4:9283391-9283410 | None:intergenic | 55.0% |
| GAGAGGAGGGAACAAGTGCA+CGG | + | chr2_4:9282409-9282428 | None:intergenic | 55.0% | |
| ! | CAGCTGGTGATGTGGAGTGT+GGG | + | chr2_4:9283390-9283409 | None:intergenic | 55.0% |
| ! | TCAGCTGGTGATGTGGAGTG+TGG | + | chr2_4:9283391-9283410 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9282140 | 9284325 | 9282140 | ID=Msa0313830;Name=Msa0313830 |
| chr2_4 | mRNA | 9282140 | 9284325 | 9282140 | ID=Msa0313830-mRNA-1;Parent=Msa0313830;Name=Msa0313830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|256 |
| chr2_4 | exon | 9284032 | 9284325 | 9284032 | ID=Msa0313830-mRNA-1:exon:3565;Parent=Msa0313830-mRNA-1 |
| chr2_4 | exon | 9282140 | 9282616 | 9282140 | ID=Msa0313830-mRNA-1:exon:3564;Parent=Msa0313830-mRNA-1 |
| chr2_4 | CDS | 9284032 | 9284325 | 9284032 | ID=Msa0313830-mRNA-1:cds;Parent=Msa0313830-mRNA-1 |
| chr2_4 | CDS | 9282140 | 9282616 | 9282140 | ID=Msa0313830-mRNA-1:cds;Parent=Msa0313830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
