Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222140 | XP_013462544.1 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 5.54e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222140 | sp|Q9LET0|BH107_ARATH | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 7.70e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222140 | A0A072V5E0 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 2.64e-178 | 499 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0222140 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062010 | Msa0222140 | 0.817716 | 2.853857e-52 | -8.615850e-47 |
| Msa0222140 | Msa0235100 | 0.815009 | 1.151411e-51 | -8.615850e-47 |
| Msa0222140 | Msa0273610 | 0.904682 | 9.507234e-80 | -8.615850e-47 |
| Msa0222140 | Msa0277520 | 0.810370 | 1.192242e-50 | -8.615850e-47 |
| Msa0222140 | Msa0313830 | 0.893593 | 5.440592e-75 | -8.615850e-47 |
| Msa0222140 | Msa0328090 | 0.804336 | 2.268150e-49 | -8.615850e-47 |
| Msa0222140 | Msa0386910 | 0.807820 | 4.192453e-50 | -8.615850e-47 |
| Msa0222140 | Msa0390160 | 0.811325 | 7.408443e-51 | -8.615850e-47 |
| Msa0222140 | Msa0390170 | 0.809612 | 1.736006e-50 | -8.615850e-47 |
| Msa0222140 | Msa0448190 | 0.825298 | 5.060372e-54 | -8.615850e-47 |
| Msa0222140 | Msa0523720 | 0.800494 | 1.404016e-48 | -8.615850e-47 |
| Msa0222140 | Msa0536770 | 0.804375 | 2.225953e-49 | -8.615850e-47 |
| Msa0222140 | Msa0591490 | 0.803000 | 4.295058e-49 | -8.615850e-47 |
| Msa0222140 | Msa0594630 | 0.804415 | 2.183958e-49 | -8.615850e-47 |
| Msa0222140 | Msa0733560 | 0.805774 | 1.134623e-49 | -8.615850e-47 |
| Msa0222140 | Msa0789780 | 0.802745 | 4.848966e-49 | -8.615850e-47 |
| Msa0222140 | Msa0841520 | 0.811410 | 7.098563e-51 | -8.615850e-47 |
| Msa0222140 | Msa0921790 | 0.800299 | 1.538099e-48 | -8.615850e-47 |
| Msa0222140 | Msa1022510 | 0.807910 | 4.013051e-50 | -8.615850e-47 |
| Msa0222140 | Msa1075090 | 0.802817 | 4.685708e-49 | -8.615850e-47 |
| Msa0222140 | Msa1095590 | 0.806767 | 7.010002e-50 | -8.615850e-47 |
| Msa0222140 | Msa1106680 | 0.806335 | 8.648245e-50 | -8.615850e-47 |
| Msa0222140 | Msa1115980 | 0.804952 | 1.687229e-49 | -8.615850e-47 |
| Msa0222140 | Msa1181090 | 0.800874 | 1.174205e-48 | -8.615850e-47 |
| Msa0222140 | Msa1368420 | 0.807356 | 5.260422e-50 | -8.615850e-47 |
| Msa0222140 | Msa1383220 | 0.812303 | 4.538322e-51 | -8.615850e-47 |
| Msa0222140 | Msa1429550 | 0.956683 | 1.653133e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222140 | MtrunA17_Chr4g0045901 | 55.932 | 236 | 99 | 3 | 3 | 233 | 10 | 245 | 1.68e-71 | 220 |
| Msa0222140 | MtrunA17_Chr2g0283714 | 70.253 | 158 | 7 | 1 | 99 | 256 | 16 | 133 | 4.20e-70 | 211 |
| Msa0222140 | MtrunA17_Chr4g0041051 | 47.727 | 220 | 109 | 4 | 19 | 234 | 21 | 238 | 8.49e-54 | 174 |
| Msa0222140 | MtrunA17_Chr2g0325521 | 49.268 | 205 | 98 | 3 | 29 | 229 | 23 | 225 | 9.34e-53 | 171 |
| Msa0222140 | MtrunA17_Chr7g0255961 | 36.957 | 184 | 107 | 3 | 62 | 241 | 70 | 248 | 1.16e-30 | 114 |
| Msa0222140 | MtrunA17_Chr3g0113721 | 39.080 | 174 | 87 | 4 | 67 | 227 | 39 | 206 | 9.15e-29 | 108 |
| Msa0222140 | MtrunA17_Chr1g0198801 | 48.201 | 139 | 65 | 1 | 63 | 194 | 154 | 292 | 2.18e-28 | 110 |
| Msa0222140 | MtrunA17_Chr5g0412371 | 37.857 | 140 | 80 | 2 | 56 | 189 | 34 | 172 | 5.27e-23 | 93.2 |
| Msa0222140 | MtrunA17_Chr5g0427361 | 32.883 | 222 | 118 | 4 | 63 | 254 | 33 | 253 | 2.16e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222140 | AT3G56770.1 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 7.83e-31 | 114 |
| Msa0222140 | AT2G40200.1 | 38.889 | 162 | 91 | 2 | 69 | 224 | 65 | 224 | 3.48e-30 | 113 |
| Msa0222140 | AT1G68810.1 | 43.605 | 172 | 91 | 4 | 56 | 223 | 164 | 333 | 1.93e-28 | 111 |
| Msa0222140 | AT2G41130.1 | 34.529 | 223 | 130 | 5 | 17 | 228 | 11 | 228 | 5.06e-27 | 105 |
| Msa0222140 | AT3G25710.1 | 44.118 | 136 | 73 | 2 | 56 | 189 | 122 | 256 | 1.68e-24 | 100 |
| Msa0222140 | AT4G38070.1 | 34.959 | 123 | 76 | 2 | 66 | 188 | 91 | 209 | 4.26e-17 | 78.6 |
Find 45 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACAATGTCAACTTAT+TGG | 0.161618 | 2_1:+71150531 | Msa0222140:CDS |
| CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | 2_1:+71150232 | Msa0222140:CDS |
| ATCAACAAACTCATTGGTTT+TGG | 0.255474 | 2_1:+71148571 | Msa0222140:CDS |
| CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | 2_1:-71150396 | None:intergenic |
| AAGTCCCCTCCAATAATTAA+TGG | 0.304566 | 2_1:+71148617 | Msa0222140:CDS |
| TAGTAGCTCTGAAGAATCAT+AGG | 0.328548 | 2_1:+71148672 | Msa0222140:CDS |
| AATGCCACTTCATATAGATT+TGG | 0.335342 | 2_1:+71148515 | Msa0222140:CDS |
| AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | 2_1:+71148707 | Msa0222140:CDS |
| TGATAAACTTCAACTACAAT+TGG | 0.375139 | 2_1:+71150428 | Msa0222140:CDS |
| CCAGTACAGAACTCAGTTCC+TGG | 0.377817 | 2_1:-71150566 | None:intergenic |
| AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | 2_1:+71150330 | Msa0222140:CDS |
| AAGGGAAGAAATATCAACTT+TGG | 0.396844 | 2_1:+71150452 | Msa0222140:CDS |
| AAATATCAACTTTGGGAGAC+AGG | 0.404598 | 2_1:+71150460 | Msa0222140:CDS |
| TTCACTTCATCATCATCTGT+TGG | 0.414183 | 2_1:-71150309 | None:intergenic |
| GTTTGTATCAACAAACTCAT+TGG | 0.426459 | 2_1:+71148565 | Msa0222140:CDS |
| TTCTCTCCATTAATTATTGG+AGG | 0.433494 | 2_1:-71148623 | None:intergenic |
| AGGGAAGAAATATCAACTTT+GGG | 0.445016 | 2_1:+71150453 | Msa0222140:CDS |
| AACTTCAACTACAATTGGTA+AGG | 0.473092 | 2_1:+71150433 | Msa0222140:CDS |
| CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | 2_1:+71150566 | Msa0222140:CDS |
| ACTGAGTTCTGTACTGGAAA+GGG | 0.489265 | 2_1:+71150572 | Msa0222140:CDS |
| CTCTCCATTAATTATTGGAG+GGG | 0.498785 | 2_1:-71148621 | None:intergenic |
| TATTATACCTTTGGAGAGGA+GGG | 0.509382 | 2_1:-71148758 | None:intergenic |
| ATTATAGCTCTGATATTTCG+AGG | 0.509996 | 2_1:+71148483 | Msa0222140:CDS |
| CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | 2_1:+71148543 | Msa0222140:CDS |
| TCTCTCCATTAATTATTGGA+GGG | 0.544195 | 2_1:-71148622 | None:intergenic |
| TTATTATACCTTTGGAGAGG+AGG | 0.544800 | 2_1:-71148759 | None:intergenic |
| AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | 2_1:+71150571 | Msa0222140:CDS |
| AGTAGCTCTGAAGAATCATA+GGG | 0.557776 | 2_1:+71148673 | Msa0222140:CDS |
| CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | 2_1:+71150224 | Msa0222140:CDS |
| AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | 2_1:+71150276 | Msa0222140:CDS |
| ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | 2_1:+71148751 | Msa0222140:CDS |
| GGAAAGGGTTTCTACCTCGA+TGG | 0.569167 | 2_1:+71150587 | Msa0222140:CDS |
| AGCACCAAATCTATATGAAG+TGG | 0.573695 | 2_1:-71148519 | None:intergenic |
| AATATCAACTTTGGGAGACA+GGG | 0.583527 | 2_1:+71150461 | Msa0222140:CDS |
| TATTGGAAATAATGTTCACC+AGG | 0.592874 | 2_1:+71150548 | Msa0222140:CDS |
| TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | 2_1:+71148542 | Msa0222140:CDS |
| AGATTATTATACCTTTGGAG+AGG | 0.615783 | 2_1:-71148762 | None:intergenic |
| ACTTCAACTACAATTGGTAA+GGG | 0.620942 | 2_1:+71150434 | Msa0222140:CDS |
| ATCAACAAGAGCAAAACTCA+TGG | 0.629280 | 2_1:-71150674 | None:intergenic |
| GTTGAACCATGTGAAAATGG+TGG | 0.637388 | 2_1:+71150333 | Msa0222140:CDS |
| TGCATCTGTTTGCAAAGACG+TGG | 0.639661 | 2_1:-71150627 | None:intergenic |
| GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | 2_1:-71148745 | None:intergenic |
| GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | 2_1:+71148539 | Msa0222140:CDS |
| AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | 2_1:+71148684 | Msa0222140:CDS |
| TCTTAACGAGTAATCCATCG+AGG | 0.765808 | 2_1:-71150601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTAAAATATTTTTG+TGG | + | chr2_1:71148881-71148900 | Msa0222140:intron | 10.0% |
| !!! | ATTTTTTAAGGATTATTAAA+TGG | - | chr2_1:71149962-71149981 | None:intergenic | 10.0% |
| !!! | TTGTTTTTAAAATATTTTTG+TGG | + | chr2_1:71148881-71148900 | Msa0222140:intron | 10.0% |
| !!! | ATTTTTTAAGGATTATTAAA+TGG | - | chr2_1:71149962-71149981 | None:intergenic | 10.0% |
| !! | TATAAAAAATACGAAAAGAA+AGG | - | chr2_1:71148789-71148808 | None:intergenic | 15.0% |
| !!! | ACTTCGTTATATTTTTTTAA+GGG | + | chr2_1:71148838-71148857 | Msa0222140:intron | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | + | chr2_1:71148996-71149015 | Msa0222140:intron | 15.0% |
| !!! | TTATAATGTTTAACTTTTGT+TGG | - | chr2_1:71149512-71149531 | None:intergenic | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | + | chr2_1:71149880-71149899 | Msa0222140:intron | 15.0% |
| !! | TATAAAAAATACGAAAAGAA+AGG | - | chr2_1:71148789-71148808 | None:intergenic | 15.0% |
| !!! | ACTTCGTTATATTTTTTTAA+GGG | + | chr2_1:71148838-71148857 | Msa0222140:intron | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | + | chr2_1:71148996-71149015 | Msa0222140:intron | 15.0% |
| !!! | TTATAATGTTTAACTTTTGT+TGG | - | chr2_1:71149512-71149531 | None:intergenic | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | + | chr2_1:71149880-71149899 | Msa0222140:intron | 15.0% |
| !!! | TTTTTCTCTCCATTAATTAT+TGG | - | chr2_1:71148629-71148648 | None:intergenic | 20.0% |
| !!! | CACTTCGTTATATTTTTTTA+AGG | + | chr2_1:71148837-71148856 | Msa0222140:intron | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | - | chr2_1:71148950-71148969 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | + | chr2_1:71149192-71149211 | Msa0222140:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | + | chr2_1:71149625-71149644 | Msa0222140:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | + | chr2_1:71149883-71149902 | Msa0222140:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | + | chr2_1:71149884-71149903 | Msa0222140:intron | 20.0% |
| !! | TTTAAGGATTATTAAATGGT+TGG | - | chr2_1:71149958-71149977 | None:intergenic | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | + | chr2_1:71150175-71150194 | Msa0222140:intron | 20.0% |
| !!! | TTTTTCTCTCCATTAATTAT+TGG | - | chr2_1:71148629-71148648 | None:intergenic | 20.0% |
| !!! | CACTTCGTTATATTTTTTTA+AGG | + | chr2_1:71148837-71148856 | Msa0222140:intron | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | - | chr2_1:71148950-71148969 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | + | chr2_1:71149192-71149211 | Msa0222140:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | + | chr2_1:71149625-71149644 | Msa0222140:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | + | chr2_1:71149883-71149902 | Msa0222140:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | + | chr2_1:71149884-71149903 | Msa0222140:intron | 20.0% |
| !! | TTTAAGGATTATTAAATGGT+TGG | - | chr2_1:71149958-71149977 | None:intergenic | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | + | chr2_1:71150175-71150194 | Msa0222140:intron | 20.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | + | chr2_1:71148707-71148726 | Msa0222140:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | - | chr2_1:71148770-71148789 | None:intergenic | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | - | chr2_1:71149387-71149406 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | - | chr2_1:71149688-71149707 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | - | chr2_1:71149689-71149708 | None:intergenic | 25.0% |
| ! | TAACATATGATTCTTAGTTG+TGG | + | chr2_1:71149733-71149752 | Msa0222140:intron | 25.0% |
| ! | AACATATGATTCTTAGTTGT+GGG | + | chr2_1:71149734-71149753 | Msa0222140:intron | 25.0% |
| ! | TCTGATTTCTAATATGTGTT+AGG | + | chr2_1:71150037-71150056 | Msa0222140:intron | 25.0% |
| ! | CTGATTTCTAATATGTGTTA+GGG | + | chr2_1:71150038-71150057 | Msa0222140:intron | 25.0% |
| ! | TATGTGTTAGGGTTTAATAT+CGG | + | chr2_1:71150049-71150068 | Msa0222140:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | + | chr2_1:71150428-71150447 | Msa0222140:CDS | 25.0% |
| ! | ATTGAACAATGTCAACTTAT+TGG | + | chr2_1:71150531-71150550 | Msa0222140:CDS | 25.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | + | chr2_1:71148707-71148726 | Msa0222140:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | - | chr2_1:71148770-71148789 | None:intergenic | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | - | chr2_1:71149387-71149406 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | - | chr2_1:71149688-71149707 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | - | chr2_1:71149689-71149708 | None:intergenic | 25.0% |
| ! | TAACATATGATTCTTAGTTG+TGG | + | chr2_1:71149733-71149752 | Msa0222140:intron | 25.0% |
| ! | AACATATGATTCTTAGTTGT+GGG | + | chr2_1:71149734-71149753 | Msa0222140:intron | 25.0% |
| ! | TCTGATTTCTAATATGTGTT+AGG | + | chr2_1:71150037-71150056 | Msa0222140:intron | 25.0% |
| ! | CTGATTTCTAATATGTGTTA+GGG | + | chr2_1:71150038-71150057 | Msa0222140:intron | 25.0% |
| ! | TATGTGTTAGGGTTTAATAT+CGG | + | chr2_1:71150049-71150068 | Msa0222140:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | + | chr2_1:71150428-71150447 | Msa0222140:CDS | 25.0% |
| ! | ATTGAACAATGTCAACTTAT+TGG | + | chr2_1:71150531-71150550 | Msa0222140:CDS | 25.0% |
| !! | ATTATAGCTCTGATATTTCG+AGG | + | chr2_1:71148483-71148502 | Msa0222140:CDS | 30.0% |
| ! | AATGCCACTTCATATAGATT+TGG | + | chr2_1:71148515-71148534 | Msa0222140:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | + | chr2_1:71148565-71148584 | Msa0222140:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | + | chr2_1:71148571-71148590 | Msa0222140:CDS | 30.0% |
| TCTCTCCATTAATTATTGGA+GGG | - | chr2_1:71148625-71148644 | None:intergenic | 30.0% | |
| TTCTCTCCATTAATTATTGG+AGG | - | chr2_1:71148626-71148645 | None:intergenic | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | - | chr2_1:71148765-71148784 | None:intergenic | 30.0% |
| ACACAATGATCGAATATGAT+TGG | - | chr2_1:71148817-71148836 | None:intergenic | 30.0% | |
| ! | ATAAACATGTTTTACACCGA+TGG | + | chr2_1:71148920-71148939 | Msa0222140:intron | 30.0% |
| AAGTTCAATTGGTAAACCAT+CGG | - | chr2_1:71148939-71148958 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | + | chr2_1:71149003-71149022 | Msa0222140:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | + | chr2_1:71149249-71149268 | Msa0222140:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | + | chr2_1:71149250-71149269 | Msa0222140:intron | 30.0% | |
| ATTGAAATTCATGCAGCATT+GGG | - | chr2_1:71149304-71149323 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | + | chr2_1:71149381-71149400 | Msa0222140:intron | 30.0% |
| !! | TGTTTAACTTTTGTTGGTGA+TGG | - | chr2_1:71149506-71149525 | None:intergenic | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | + | chr2_1:71149547-71149566 | Msa0222140:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | - | chr2_1:71149575-71149594 | None:intergenic | 30.0% |
| AAGTCAACTATATAAGGTTG+TGG | + | chr2_1:71149578-71149597 | Msa0222140:intron | 30.0% | |
| ! | TTTTGCAGATTTATCTTCGA+TGG | + | chr2_1:71149661-71149680 | Msa0222140:intron | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | - | chr2_1:71149793-71149812 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | - | chr2_1:71149794-71149813 | None:intergenic | 30.0% |
| AAAGTTGAACCATGTGAAAA+TGG | + | chr2_1:71150330-71150349 | Msa0222140:CDS | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | + | chr2_1:71150433-71150452 | Msa0222140:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | + | chr2_1:71150434-71150453 | Msa0222140:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | + | chr2_1:71150452-71150471 | Msa0222140:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | + | chr2_1:71150453-71150472 | Msa0222140:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | + | chr2_1:71150548-71150567 | Msa0222140:CDS | 30.0% | |
| !! | ATTATAGCTCTGATATTTCG+AGG | + | chr2_1:71148483-71148502 | Msa0222140:CDS | 30.0% |
| ! | AATGCCACTTCATATAGATT+TGG | + | chr2_1:71148515-71148534 | Msa0222140:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | + | chr2_1:71148565-71148584 | Msa0222140:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | + | chr2_1:71148571-71148590 | Msa0222140:CDS | 30.0% |
| TCTCTCCATTAATTATTGGA+GGG | - | chr2_1:71148625-71148644 | None:intergenic | 30.0% | |
| TTCTCTCCATTAATTATTGG+AGG | - | chr2_1:71148626-71148645 | None:intergenic | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | - | chr2_1:71148765-71148784 | None:intergenic | 30.0% |
| ACACAATGATCGAATATGAT+TGG | - | chr2_1:71148817-71148836 | None:intergenic | 30.0% | |
| ! | ATAAACATGTTTTACACCGA+TGG | + | chr2_1:71148920-71148939 | Msa0222140:intron | 30.0% |
| AAGTTCAATTGGTAAACCAT+CGG | - | chr2_1:71148939-71148958 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | + | chr2_1:71149003-71149022 | Msa0222140:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | + | chr2_1:71149249-71149268 | Msa0222140:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | + | chr2_1:71149250-71149269 | Msa0222140:intron | 30.0% | |
| ATTGAAATTCATGCAGCATT+GGG | - | chr2_1:71149304-71149323 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | + | chr2_1:71149381-71149400 | Msa0222140:intron | 30.0% |
| !! | TGTTTAACTTTTGTTGGTGA+TGG | - | chr2_1:71149506-71149525 | None:intergenic | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | + | chr2_1:71149547-71149566 | Msa0222140:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | - | chr2_1:71149575-71149594 | None:intergenic | 30.0% |
| AAGTCAACTATATAAGGTTG+TGG | + | chr2_1:71149578-71149597 | Msa0222140:intron | 30.0% | |
| ! | TTTTGCAGATTTATCTTCGA+TGG | + | chr2_1:71149661-71149680 | Msa0222140:intron | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | - | chr2_1:71149793-71149812 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | - | chr2_1:71149794-71149813 | None:intergenic | 30.0% |
| AAAGTTGAACCATGTGAAAA+TGG | + | chr2_1:71150330-71150349 | Msa0222140:CDS | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | + | chr2_1:71150433-71150452 | Msa0222140:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | + | chr2_1:71150434-71150453 | Msa0222140:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | + | chr2_1:71150452-71150471 | Msa0222140:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | + | chr2_1:71150453-71150472 | Msa0222140:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | + | chr2_1:71150548-71150567 | Msa0222140:CDS | 30.0% | |
| AGCACCAAATCTATATGAAG+TGG | - | chr2_1:71148522-71148541 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | + | chr2_1:71148584-71148603 | Msa0222140:CDS | 35.0% |
| AAGTCCCCTCCAATAATTAA+TGG | + | chr2_1:71148617-71148636 | Msa0222140:CDS | 35.0% | |
| CTCTCCATTAATTATTGGAG+GGG | - | chr2_1:71148624-71148643 | None:intergenic | 35.0% | |
| !! | TAGTAGCTCTGAAGAATCAT+AGG | + | chr2_1:71148672-71148691 | Msa0222140:CDS | 35.0% |
| !! | AGTAGCTCTGAAGAATCATA+GGG | + | chr2_1:71148673-71148692 | Msa0222140:CDS | 35.0% |
| ! | TATTATACCTTTGGAGAGGA+GGG | - | chr2_1:71148761-71148780 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | - | chr2_1:71148762-71148781 | None:intergenic | 35.0% |
| ACAGAGACATTTGATATGCT+CGG | - | chr2_1:71149082-71149101 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | + | chr2_1:71149234-71149253 | Msa0222140:intron | 35.0% | |
| CATTGAAATTCATGCAGCAT+TGG | - | chr2_1:71149305-71149324 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | + | chr2_1:71149532-71149551 | Msa0222140:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | - | chr2_1:71149548-71149567 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | + | chr2_1:71149546-71149565 | Msa0222140:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | + | chr2_1:71149572-71149591 | Msa0222140:intron | 35.0% | |
| TATTAATAGCTGTCTACAGC+TGG | + | chr2_1:71149822-71149841 | Msa0222140:intron | 35.0% | |
| TAACTTTACCTGACCAATGA+AGG | + | chr2_1:71149922-71149941 | Msa0222140:intron | 35.0% | |
| TGGTTGCTTAATTCCTTCAT+TGG | - | chr2_1:71149938-71149957 | None:intergenic | 35.0% | |
| TCATTCAAAACGTAGGTCAT+AGG | - | chr2_1:71150009-71150028 | None:intergenic | 35.0% | |
| !! | TGACCTACGTTTTGAATGAA+AGG | + | chr2_1:71150010-71150029 | Msa0222140:intron | 35.0% |
| !! | GTCATTTACGATGTCGATTT+CGG | + | chr2_1:71150129-71150148 | Msa0222140:intron | 35.0% |
| CTGTTATTAATGGTAGCTGA+TGG | + | chr2_1:71150185-71150204 | Msa0222140:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | + | chr2_1:71150200-71150219 | Msa0222140:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | + | chr2_1:71150232-71150251 | Msa0222140:CDS | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | + | chr2_1:71150276-71150295 | Msa0222140:CDS | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | - | chr2_1:71150312-71150331 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | - | chr2_1:71150342-71150361 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | - | chr2_1:71150399-71150418 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | + | chr2_1:71150460-71150479 | Msa0222140:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | + | chr2_1:71150461-71150480 | Msa0222140:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | - | chr2_1:71148522-71148541 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | + | chr2_1:71148584-71148603 | Msa0222140:CDS | 35.0% |
| AAGTCCCCTCCAATAATTAA+TGG | + | chr2_1:71148617-71148636 | Msa0222140:CDS | 35.0% | |
| CTCTCCATTAATTATTGGAG+GGG | - | chr2_1:71148624-71148643 | None:intergenic | 35.0% | |
| !! | TAGTAGCTCTGAAGAATCAT+AGG | + | chr2_1:71148672-71148691 | Msa0222140:CDS | 35.0% |
| !! | AGTAGCTCTGAAGAATCATA+GGG | + | chr2_1:71148673-71148692 | Msa0222140:CDS | 35.0% |
| ! | TATTATACCTTTGGAGAGGA+GGG | - | chr2_1:71148761-71148780 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | - | chr2_1:71148762-71148781 | None:intergenic | 35.0% |
| ACAGAGACATTTGATATGCT+CGG | - | chr2_1:71149082-71149101 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | + | chr2_1:71149234-71149253 | Msa0222140:intron | 35.0% | |
| CATTGAAATTCATGCAGCAT+TGG | - | chr2_1:71149305-71149324 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | + | chr2_1:71149532-71149551 | Msa0222140:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | - | chr2_1:71149548-71149567 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | + | chr2_1:71149546-71149565 | Msa0222140:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | + | chr2_1:71149572-71149591 | Msa0222140:intron | 35.0% | |
| TATTAATAGCTGTCTACAGC+TGG | + | chr2_1:71149822-71149841 | Msa0222140:intron | 35.0% | |
| TAACTTTACCTGACCAATGA+AGG | + | chr2_1:71149922-71149941 | Msa0222140:intron | 35.0% | |
| TGGTTGCTTAATTCCTTCAT+TGG | - | chr2_1:71149938-71149957 | None:intergenic | 35.0% | |
| TCATTCAAAACGTAGGTCAT+AGG | - | chr2_1:71150009-71150028 | None:intergenic | 35.0% | |
| !! | TGACCTACGTTTTGAATGAA+AGG | + | chr2_1:71150010-71150029 | Msa0222140:intron | 35.0% |
| !! | GTCATTTACGATGTCGATTT+CGG | + | chr2_1:71150129-71150148 | Msa0222140:intron | 35.0% |
| CTGTTATTAATGGTAGCTGA+TGG | + | chr2_1:71150185-71150204 | Msa0222140:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | + | chr2_1:71150200-71150219 | Msa0222140:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | + | chr2_1:71150232-71150251 | Msa0222140:CDS | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | + | chr2_1:71150276-71150295 | Msa0222140:CDS | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | - | chr2_1:71150312-71150331 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | - | chr2_1:71150342-71150361 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | - | chr2_1:71150399-71150418 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | + | chr2_1:71150460-71150479 | Msa0222140:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | + | chr2_1:71150461-71150480 | Msa0222140:CDS | 35.0% |
| GCTTCAAATGAGACTTCAAG+AGG | + | chr2_1:71148539-71148558 | Msa0222140:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | + | chr2_1:71148542-71148561 | Msa0222140:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | + | chr2_1:71148543-71148562 | Msa0222140:CDS | 40.0% | |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | + | chr2_1:71149034-71149053 | Msa0222140:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | - | chr2_1:71149081-71149100 | None:intergenic | 40.0% | |
| ACATCACCAGCTGAATATTC+TGG | + | chr2_1:71149767-71149786 | Msa0222140:intron | 40.0% | |
| GCTTAATTCCTTCATTGGTC+AGG | - | chr2_1:71149933-71149952 | None:intergenic | 40.0% | |
| ACGCCTTTCATTCAAAACGT+AGG | - | chr2_1:71150016-71150035 | None:intergenic | 40.0% | |
| CAAAGCAACTTTACTAGCTG+AGG | + | chr2_1:71150224-71150243 | Msa0222140:CDS | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | + | chr2_1:71150333-71150352 | Msa0222140:CDS | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | + | chr2_1:71150571-71150590 | Msa0222140:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | + | chr2_1:71150572-71150591 | Msa0222140:CDS | 40.0% | |
| TCTTAACGAGTAATCCATCG+AGG | - | chr2_1:71150604-71150623 | None:intergenic | 40.0% | |
| GCTTCAAATGAGACTTCAAG+AGG | + | chr2_1:71148539-71148558 | Msa0222140:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | + | chr2_1:71148542-71148561 | Msa0222140:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | + | chr2_1:71148543-71148562 | Msa0222140:CDS | 40.0% | |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | + | chr2_1:71149034-71149053 | Msa0222140:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | - | chr2_1:71149081-71149100 | None:intergenic | 40.0% | |
| ACATCACCAGCTGAATATTC+TGG | + | chr2_1:71149767-71149786 | Msa0222140:intron | 40.0% | |
| GCTTAATTCCTTCATTGGTC+AGG | - | chr2_1:71149933-71149952 | None:intergenic | 40.0% | |
| ACGCCTTTCATTCAAAACGT+AGG | - | chr2_1:71150016-71150035 | None:intergenic | 40.0% | |
| CAAAGCAACTTTACTAGCTG+AGG | + | chr2_1:71150224-71150243 | Msa0222140:CDS | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | + | chr2_1:71150333-71150352 | Msa0222140:CDS | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | + | chr2_1:71150571-71150590 | Msa0222140:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | + | chr2_1:71150572-71150591 | Msa0222140:CDS | 40.0% | |
| TCTTAACGAGTAATCCATCG+AGG | - | chr2_1:71150604-71150623 | None:intergenic | 40.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | + | chr2_1:71148684-71148703 | Msa0222140:CDS | 45.0% | |
| TACAAGCTATGGGACAGAAC+TGG | + | chr2_1:71149260-71149279 | Msa0222140:intron | 45.0% | |
| TCTTCGATGGTCCCAAACTA+AGG | + | chr2_1:71149674-71149693 | Msa0222140:intron | 45.0% | |
| TGCATCTGTTTGCAAAGACG+TGG | - | chr2_1:71150630-71150649 | None:intergenic | 45.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | + | chr2_1:71148684-71148703 | Msa0222140:CDS | 45.0% | |
| TACAAGCTATGGGACAGAAC+TGG | + | chr2_1:71149260-71149279 | Msa0222140:intron | 45.0% | |
| TCTTCGATGGTCCCAAACTA+AGG | + | chr2_1:71149674-71149693 | Msa0222140:intron | 45.0% | |
| TGCATCTGTTTGCAAAGACG+TGG | - | chr2_1:71150630-71150649 | None:intergenic | 45.0% | |
| !! | TAAACATTATAATTAAATTA+AGG | + | chr2_1:71149520-71149539 | Msa0222140:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | + | chr2_1:71149521-71149540 | Msa0222140:intron | 5.0% |
| !!! | TCTTATTTATTTATTTTTTA+AGG | - | chr2_1:71149974-71149993 | None:intergenic | 5.0% |
| !! | AAAAAATAAATAAATAAGAT+AGG | + | chr2_1:71149975-71149994 | Msa0222140:intron | 5.0% |
| !! | TAAACATTATAATTAAATTA+AGG | + | chr2_1:71149520-71149539 | Msa0222140:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | + | chr2_1:71149521-71149540 | Msa0222140:intron | 5.0% |
| !!! | TCTTATTTATTTATTTTTTA+AGG | - | chr2_1:71149974-71149993 | None:intergenic | 5.0% |
| !! | AAAAAATAAATAAATAAGAT+AGG | + | chr2_1:71149975-71149994 | Msa0222140:intron | 5.0% |
| ACTTGTTCCCTCCTCTCCAA+AGG | + | chr2_1:71148751-71148770 | Msa0222140:CDS | 50.0% | |
| ! | CAGCTGGTGATGTGAAGTGT+GGG | - | chr2_1:71149760-71149779 | None:intergenic | 50.0% |
| ! | TCAGCTGGTGATGTGAAGTG+TGG | - | chr2_1:71149761-71149780 | None:intergenic | 50.0% |
| TGAGGGCCAGAATATTCAGC+TGG | - | chr2_1:71149776-71149795 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | - | chr2_1:71150569-71150588 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | + | chr2_1:71150566-71150585 | Msa0222140:CDS | 50.0% | |
| GGAAAGGGTTTCTACCTCGA+TGG | + | chr2_1:71150587-71150606 | Msa0222140:CDS | 50.0% | |
| ACTTGTTCCCTCCTCTCCAA+AGG | + | chr2_1:71148751-71148770 | Msa0222140:CDS | 50.0% | |
| ! | CAGCTGGTGATGTGAAGTGT+GGG | - | chr2_1:71149760-71149779 | None:intergenic | 50.0% |
| ! | TCAGCTGGTGATGTGAAGTG+TGG | - | chr2_1:71149761-71149780 | None:intergenic | 50.0% |
| TGAGGGCCAGAATATTCAGC+TGG | - | chr2_1:71149776-71149795 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | - | chr2_1:71150569-71150588 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | + | chr2_1:71150566-71150585 | Msa0222140:CDS | 50.0% | |
| GGAAAGGGTTTCTACCTCGA+TGG | + | chr2_1:71150587-71150606 | Msa0222140:CDS | 50.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | - | chr2_1:71148748-71148767 | None:intergenic | 55.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | - | chr2_1:71148748-71148767 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 71148479 | 71150695 | 71148479 | ID=Msa0222140;Name=Msa0222140 |
| chr2_1 | mRNA | 71148479 | 71150695 | 71148479 | ID=Msa0222140-mRNA-1;Parent=Msa0222140;Name=Msa0222140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|256 |
| chr2_1 | exon | 71148479 | 71148772 | 71148479 | ID=Msa0222140-mRNA-1:exon:20422;Parent=Msa0222140-mRNA-1 |
| chr2_1 | exon | 71150219 | 71150695 | 71150219 | ID=Msa0222140-mRNA-1:exon:20423;Parent=Msa0222140-mRNA-1 |
| chr2_1 | CDS | 71148479 | 71148772 | 71148479 | ID=Msa0222140-mRNA-1:cds;Parent=Msa0222140-mRNA-1 |
| chr2_1 | CDS | 71150219 | 71150695 | 71150219 | ID=Msa0222140-mRNA-1:cds;Parent=Msa0222140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
