Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429550 | XP_013462544.1 | 95.312 | 256 | 12 | 0 | 1 | 256 | 1 | 256 | 6.31e-179 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429550 | sp|Q9LET0|BH107_ARATH | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 9.32e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429550 | A0A072V5E0 | 95.312 | 256 | 12 | 0 | 1 | 256 | 1 | 256 | 3.01e-179 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1429550 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1429550 | 0.807328 | 5.332563e-50 | -8.615850e-47 |
| Msa0062010 | Msa1429550 | 0.826100 | 3.265457e-54 | -8.615850e-47 |
| Msa0108350 | Msa1429550 | 0.812710 | 3.697539e-51 | -8.615850e-47 |
| Msa1368420 | Msa1429550 | 0.807785 | 4.265904e-50 | -8.615850e-47 |
| Msa1383220 | Msa1429550 | 0.812756 | 3.611331e-51 | -8.615850e-47 |
| Msa1406840 | Msa1429550 | 0.813570 | 2.393924e-51 | -8.615850e-47 |
| Msa0604200 | Msa1429550 | 0.802785 | 4.758212e-49 | -8.615850e-47 |
| Msa0609460 | Msa1429550 | 0.807033 | 6.160205e-50 | -8.615850e-47 |
| Msa0616300 | Msa1429550 | 0.811025 | 8.604230e-51 | -8.615850e-47 |
| Msa0632980 | Msa1429550 | 0.809184 | 2.144562e-50 | -8.615850e-47 |
| Msa0643840 | Msa1429550 | 0.814922 | 1.203934e-51 | -8.615850e-47 |
| Msa0645370 | Msa1429550 | 0.801927 | 7.146389e-49 | -8.615850e-47 |
| Msa0655800 | Msa1429550 | 0.808658 | 2.779200e-50 | -8.615850e-47 |
| Msa0670360 | Msa1429550 | 0.819323 | 1.233729e-52 | -8.615850e-47 |
| Msa0715220 | Msa1429550 | 0.803781 | 2.959071e-49 | -8.615850e-47 |
| Msa0733560 | Msa1429550 | 0.815464 | 9.120157e-52 | -8.615850e-47 |
| Msa0789780 | Msa1429550 | 0.805752 | 1.146771e-49 | -8.615850e-47 |
| Msa0814160 | Msa1429550 | 0.807398 | 5.153092e-50 | -8.615850e-47 |
| Msa0841520 | Msa1429550 | 0.800520 | 1.386916e-48 | -8.615850e-47 |
| Msa0150920 | Msa1429550 | 0.803445 | 3.474698e-49 | -8.615850e-47 |
| Msa0209060 | Msa1429550 | 0.802008 | 6.878376e-49 | -8.615850e-47 |
| Msa0222140 | Msa1429550 | 0.956683 | 1.653133e-114 | -8.615850e-47 |
| Msa0235100 | Msa1429550 | 0.826621 | 2.453696e-54 | -8.615850e-47 |
| Msa1231720 | Msa1429550 | 0.816688 | 4.860659e-52 | -8.615850e-47 |
| Msa1253750 | Msa1429550 | 0.809725 | 1.641970e-50 | -8.615850e-47 |
| Msa1319010 | Msa1429550 | 0.815137 | 1.078514e-51 | -8.615850e-47 |
| Msa0366510 | Msa1429550 | 0.805768 | 1.138023e-49 | -8.615850e-47 |
| Msa0386910 | Msa1429550 | 0.804685 | 1.918367e-49 | -8.615850e-47 |
| Msa0390160 | Msa1429550 | 0.811090 | 8.329303e-51 | -8.615850e-47 |
| Msa0414480 | Msa1429550 | 0.806435 | 8.236443e-50 | -8.615850e-47 |
| Msa0448190 | Msa1429550 | 0.827038 | 1.950292e-54 | -8.615850e-47 |
| Msa0987640 | Msa1429550 | 0.801033 | 1.089820e-48 | -8.615850e-47 |
| Msa1022490 | Msa1429550 | 0.806427 | 8.269692e-50 | -8.615850e-47 |
| Msa1022510 | Msa1429550 | 0.818037 | 2.415204e-52 | -8.615850e-47 |
| Msa1035050 | Msa1429550 | 0.802190 | 6.310688e-49 | -8.615850e-47 |
| Msa1048350 | Msa1429550 | 0.802598 | 5.199775e-49 | -8.615850e-47 |
| Msa1048400 | Msa1429550 | 0.810952 | 8.924784e-51 | -8.615850e-47 |
| Msa1075090 | Msa1429550 | 0.800386 | 1.476698e-48 | -8.615850e-47 |
| Msa1079820 | Msa1429550 | 0.800481 | 1.412338e-48 | -8.615850e-47 |
| Msa1106680 | Msa1429550 | 0.828065 | 1.105631e-54 | -8.615850e-47 |
| Msa0269710 | Msa1429550 | 0.807656 | 4.543855e-50 | -8.615850e-47 |
| Msa0272210 | Msa1429550 | 0.815553 | 8.713541e-52 | -8.615850e-47 |
| Msa0273610 | Msa1429550 | 0.917726 | 3.733559e-86 | -8.615850e-47 |
| Msa0278460 | Msa1429550 | 0.811184 | 7.947548e-51 | -8.615850e-47 |
| Msa0281190 | Msa1429550 | 0.814723 | 1.332070e-51 | -8.615850e-47 |
| Msa0288540 | Msa1429550 | 0.808712 | 2.707155e-50 | -8.615850e-47 |
| Msa0313830 | Msa1429550 | 0.916813 | 1.133013e-85 | -8.615850e-47 |
| Msa0328090 | Msa1429550 | 0.806280 | 8.881962e-50 | -8.615850e-47 |
| Msa1115980 | Msa1429550 | 0.801595 | 8.359014e-49 | -8.615850e-47 |
| Msa1148210 | Msa1429550 | 0.804092 | 2.549372e-49 | -8.615850e-47 |
| Msa1181090 | Msa1429550 | 0.823980 | 1.033907e-53 | -8.615850e-47 |
| Msa1197910 | Msa1429550 | 0.805700 | 1.176048e-49 | -8.615850e-47 |
| Msa0496070 | Msa1429550 | 0.808948 | 2.409455e-50 | -8.615850e-47 |
| Msa0523720 | Msa1429550 | 0.806955 | 6.396760e-50 | -8.615850e-47 |
| Msa0535570 | Msa1429550 | 0.823030 | 1.724672e-53 | -8.615850e-47 |
| Msa0536770 | Msa1429550 | 0.816402 | 5.634628e-52 | -8.615850e-47 |
| Msa0565180 | Msa1429550 | 0.801414 | 9.104363e-49 | -8.615850e-47 |
| Msa0591490 | Msa1429550 | 0.835757 | 1.393010e-56 | -8.615850e-47 |
| Msa0594630 | Msa1429550 | 0.835820 | 1.343400e-56 | -8.615850e-47 |
| Msa0873940 | Msa1429550 | 0.804162 | 2.465907e-49 | -8.615850e-47 |
| Msa0896920 | Msa1429550 | 0.806956 | 6.395641e-50 | -8.615850e-47 |
| Msa0906680 | Msa1429550 | 0.802713 | 4.922809e-49 | -8.615850e-47 |
| Msa0921790 | Msa1429550 | 0.815950 | 7.108246e-52 | -8.615850e-47 |
| Msa0946010 | Msa1429550 | 0.808314 | 3.291541e-50 | -8.615850e-47 |
| Msa0959700 | Msa1429550 | 0.802142 | 6.454159e-49 | -8.615850e-47 |
| Msa0960580 | Msa1429550 | 0.811628 | 6.367520e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429550 | MtrunA17_Chr4g0045901 | 56.828 | 227 | 94 | 2 | 11 | 233 | 19 | 245 | 3.52e-71 | 219 |
| Msa1429550 | MtrunA17_Chr2g0283714 | 70.253 | 158 | 7 | 1 | 99 | 256 | 16 | 133 | 2.87e-70 | 212 |
| Msa1429550 | MtrunA17_Chr4g0041051 | 47.727 | 220 | 109 | 4 | 19 | 234 | 21 | 238 | 8.87e-54 | 174 |
| Msa1429550 | MtrunA17_Chr2g0325521 | 49.268 | 205 | 98 | 3 | 29 | 229 | 23 | 225 | 8.95e-53 | 171 |
| Msa1429550 | MtrunA17_Chr7g0255961 | 36.957 | 184 | 107 | 3 | 62 | 241 | 70 | 248 | 1.22e-30 | 114 |
| Msa1429550 | MtrunA17_Chr3g0113721 | 39.080 | 174 | 87 | 4 | 67 | 227 | 39 | 206 | 1.06e-28 | 108 |
| Msa1429550 | MtrunA17_Chr1g0198801 | 48.201 | 139 | 65 | 1 | 63 | 194 | 154 | 292 | 2.54e-28 | 110 |
| Msa1429550 | MtrunA17_Chr5g0412371 | 37.857 | 140 | 80 | 2 | 56 | 189 | 34 | 172 | 6.09e-23 | 93.2 |
| Msa1429550 | MtrunA17_Chr5g0427361 | 32.883 | 222 | 118 | 4 | 63 | 254 | 33 | 253 | 2.59e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429550 | AT3G56770.1 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 9.48e-31 | 114 |
| Msa1429550 | AT2G40200.1 | 38.889 | 162 | 91 | 2 | 69 | 224 | 65 | 224 | 4.07e-30 | 113 |
| Msa1429550 | AT1G68810.1 | 43.605 | 172 | 91 | 4 | 56 | 223 | 164 | 333 | 2.18e-28 | 111 |
| Msa1429550 | AT2G41130.1 | 34.529 | 223 | 130 | 5 | 17 | 228 | 11 | 228 | 4.96e-27 | 105 |
| Msa1429550 | AT3G25710.1 | 44.118 | 136 | 73 | 2 | 56 | 189 | 122 | 256 | 1.94e-24 | 100 |
| Msa1429550 | AT4G38070.1 | 34.959 | 123 | 76 | 2 | 66 | 188 | 91 | 209 | 4.48e-17 | 78.6 |
Find 45 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACAATGTCAACTTAT+TGG | 0.161618 | tig0026517:+62686 | Msa1429550:CDS |
| CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | tig0026517:+62387 | Msa1429550:CDS |
| ATCAACAAACTCATTGGTTT+TGG | 0.255474 | tig0026517:+60730 | Msa1429550:CDS |
| CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | tig0026517:-62551 | None:intergenic |
| AAGTCCCCTCCAATAATTAA+TGG | 0.304566 | tig0026517:+60776 | Msa1429550:CDS |
| TAGTAGCTCTGAAGAATCAT+AGG | 0.328548 | tig0026517:+60831 | Msa1429550:CDS |
| AATGCCACTTCATATAGATT+TGG | 0.335342 | tig0026517:+60674 | Msa1429550:CDS |
| AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | tig0026517:+60866 | Msa1429550:CDS |
| TGATAAACTTCAACTACAAT+TGG | 0.375139 | tig0026517:+62583 | Msa1429550:CDS |
| CCAGTACAGAACTCAGTTCC+TGG | 0.377817 | tig0026517:-62721 | None:intergenic |
| AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | tig0026517:+62485 | Msa1429550:CDS |
| AAGGGAAGAAATATCAACTT+TGG | 0.396844 | tig0026517:+62607 | Msa1429550:CDS |
| AAATATCAACTTTGGGAGAC+AGG | 0.404598 | tig0026517:+62615 | Msa1429550:CDS |
| TTCACTTCATCATCATCTGT+TGG | 0.414183 | tig0026517:-62464 | None:intergenic |
| GTTTGTATCAACAAACTCAT+TGG | 0.426459 | tig0026517:+60724 | Msa1429550:CDS |
| TTCTCTCCATTAATTATTGG+AGG | 0.433494 | tig0026517:-60782 | None:intergenic |
| AGGGAAGAAATATCAACTTT+GGG | 0.445016 | tig0026517:+62608 | Msa1429550:CDS |
| AACTTCAACTACAATTGGTA+AGG | 0.473092 | tig0026517:+62588 | Msa1429550:CDS |
| CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | tig0026517:+62721 | Msa1429550:CDS |
| ACTGAGTTCTGTACTGGAAA+GGG | 0.489265 | tig0026517:+62727 | Msa1429550:CDS |
| CTCTCCATTAATTATTGGAG+GGG | 0.498785 | tig0026517:-60780 | None:intergenic |
| TATTATACCTTTGGAGAGGA+GGG | 0.509382 | tig0026517:-60917 | None:intergenic |
| ATTCTAGCTCTGATATTTCG+AGG | 0.523502 | tig0026517:+60642 | Msa1429550:CDS |
| CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | tig0026517:+60702 | Msa1429550:CDS |
| TCTCTCCATTAATTATTGGA+GGG | 0.544195 | tig0026517:-60781 | None:intergenic |
| TTATTATACCTTTGGAGAGG+AGG | 0.544800 | tig0026517:-60918 | None:intergenic |
| AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | tig0026517:+62726 | Msa1429550:CDS |
| AGTAGCTCTGAAGAATCATA+GGG | 0.557776 | tig0026517:+60832 | Msa1429550:CDS |
| CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | tig0026517:+62379 | Msa1429550:CDS |
| AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | tig0026517:+62431 | Msa1429550:CDS |
| ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | tig0026517:+60910 | Msa1429550:CDS |
| GGAAAGGGTTTCTACCTCGA+TGG | 0.569167 | tig0026517:+62742 | Msa1429550:CDS |
| AGCACCAAATCTATATGAAG+TGG | 0.573695 | tig0026517:-60678 | None:intergenic |
| AATATCAACTTTGGGAGACA+GGG | 0.583527 | tig0026517:+62616 | Msa1429550:CDS |
| TATTGGAAATAATGTTCACC+AGG | 0.592874 | tig0026517:+62703 | Msa1429550:CDS |
| TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | tig0026517:+60701 | Msa1429550:CDS |
| AGATTATTATACCTTTGGAG+AGG | 0.615783 | tig0026517:-60921 | None:intergenic |
| ACTTCAACTACAATTGGTAA+GGG | 0.620942 | tig0026517:+62589 | Msa1429550:CDS |
| ATCAACAAGAGCAAAACTCA+TGG | 0.629280 | tig0026517:-62829 | None:intergenic |
| GTTGAACCATGTGAAAATGG+TGG | 0.637388 | tig0026517:+62488 | Msa1429550:CDS |
| TGCATCTGTTTGCAAAGACG+TGG | 0.639661 | tig0026517:-62782 | None:intergenic |
| GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | tig0026517:-60904 | None:intergenic |
| GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | tig0026517:+60698 | Msa1429550:CDS |
| AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | tig0026517:+60843 | Msa1429550:CDS |
| TCTTAACGAGTAATCCATCG+AGG | 0.765808 | tig0026517:-62756 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTAAAATATTTTTG+TGG | + | tig0026517:61039-61058 | Msa1429550:intron | 10.0% |
| !!! | ATTTTTTAAGGATTATTAAA+TGG | - | tig0026517:62117-62136 | None:intergenic | 10.0% |
| !! | ATATAAAAATACGAAAAGAA+AGG | - | tig0026517:60948-60967 | None:intergenic | 15.0% |
| !!! | ACTTCGTTATATTTTTTTAA+GGG | + | tig0026517:60996-61015 | Msa1429550:intron | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | + | tig0026517:61153-61172 | Msa1429550:intron | 15.0% |
| !!! | TTATAATGTTTAACTTTTGT+TGG | - | tig0026517:61669-61688 | None:intergenic | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | + | tig0026517:62036-62055 | Msa1429550:intron | 15.0% |
| !!! | TTTTTCTCTCCATTAATTAT+TGG | - | tig0026517:60788-60807 | None:intergenic | 20.0% |
| !!! | CACTTCGTTATATTTTTTTA+AGG | + | tig0026517:60995-61014 | Msa1429550:intron | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | - | tig0026517:61107-61126 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | + | tig0026517:61349-61368 | Msa1429550:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | + | tig0026517:61782-61801 | Msa1429550:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | + | tig0026517:62039-62058 | Msa1429550:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | + | tig0026517:62040-62059 | Msa1429550:intron | 20.0% |
| !! | TTTAAGGATTATTAAATGGT+TGG | - | tig0026517:62113-62132 | None:intergenic | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | + | tig0026517:62330-62349 | Msa1429550:intron | 20.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | + | tig0026517:60866-60885 | Msa1429550:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | - | tig0026517:60929-60948 | None:intergenic | 25.0% |
| !! | TATAAACATGTTTTACACGA+TGG | + | tig0026517:61077-61096 | Msa1429550:intron | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | - | tig0026517:61544-61563 | None:intergenic | 25.0% |
| ! | AAATGAAACAACCTTAGTTT+GGG | - | tig0026517:61845-61864 | None:intergenic | 25.0% |
| ! | TAAATGAAACAACCTTAGTT+TGG | - | tig0026517:61846-61865 | None:intergenic | 25.0% |
| ! | TAACATATGATTCTTAGTTG+TGG | + | tig0026517:61890-61909 | Msa1429550:intron | 25.0% |
| ! | AACATATGATTCTTAGTTGT+GGG | + | tig0026517:61891-61910 | Msa1429550:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | + | tig0026517:62583-62602 | Msa1429550:CDS | 25.0% |
| ! | ATTGAACAATGTCAACTTAT+TGG | + | tig0026517:62686-62705 | Msa1429550:CDS | 25.0% |
| ! | AATGCCACTTCATATAGATT+TGG | + | tig0026517:60674-60693 | Msa1429550:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | + | tig0026517:60724-60743 | Msa1429550:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | + | tig0026517:60730-60749 | Msa1429550:CDS | 30.0% |
| TCTCTCCATTAATTATTGGA+GGG | - | tig0026517:60784-60803 | None:intergenic | 30.0% | |
| TTCTCTCCATTAATTATTGG+AGG | - | tig0026517:60785-60804 | None:intergenic | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | - | tig0026517:60924-60943 | None:intergenic | 30.0% |
| ACACAATGATCGAATATGAT+TGG | - | tig0026517:60975-60994 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | + | tig0026517:61160-61179 | Msa1429550:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | + | tig0026517:61406-61425 | Msa1429550:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | + | tig0026517:61407-61426 | Msa1429550:intron | 30.0% | |
| ATTGAAATTCATGCAGCATT+GGG | - | tig0026517:61461-61480 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | + | tig0026517:61538-61557 | Msa1429550:intron | 30.0% |
| !! | TGTTTAACTTTTGTTGGTGA+TGG | - | tig0026517:61663-61682 | None:intergenic | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | + | tig0026517:61704-61723 | Msa1429550:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | - | tig0026517:61732-61751 | None:intergenic | 30.0% |
| AAGTCAACTATATAAGGTTG+TGG | + | tig0026517:61735-61754 | Msa1429550:intron | 30.0% | |
| ! | TTTTGCAGATTTATCTTCGA+TGG | + | tig0026517:61818-61837 | Msa1429550:intron | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | - | tig0026517:61950-61969 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | - | tig0026517:61951-61970 | None:intergenic | 30.0% |
| TCTGATTTCTAATATGCGTT+AGG | + | tig0026517:62192-62211 | Msa1429550:intron | 30.0% | |
| CTGATTTCTAATATGCGTTA+GGG | + | tig0026517:62193-62212 | Msa1429550:intron | 30.0% | |
| TATGCGTTAGGGTTTAATAT+CGG | + | tig0026517:62204-62223 | Msa1429550:intron | 30.0% | |
| AAAGTTGAACCATGTGAAAA+TGG | + | tig0026517:62485-62504 | Msa1429550:CDS | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | + | tig0026517:62588-62607 | Msa1429550:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | + | tig0026517:62589-62608 | Msa1429550:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | + | tig0026517:62607-62626 | Msa1429550:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | + | tig0026517:62608-62627 | Msa1429550:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | + | tig0026517:62703-62722 | Msa1429550:CDS | 30.0% | |
| !! | ATTCTAGCTCTGATATTTCG+AGG | + | tig0026517:60642-60661 | Msa1429550:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | - | tig0026517:60681-60700 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | + | tig0026517:60743-60762 | Msa1429550:CDS | 35.0% |
| AAGTCCCCTCCAATAATTAA+TGG | + | tig0026517:60776-60795 | Msa1429550:CDS | 35.0% | |
| CTCTCCATTAATTATTGGAG+GGG | - | tig0026517:60783-60802 | None:intergenic | 35.0% | |
| !! | TAGTAGCTCTGAAGAATCAT+AGG | + | tig0026517:60831-60850 | Msa1429550:CDS | 35.0% |
| !! | AGTAGCTCTGAAGAATCATA+GGG | + | tig0026517:60832-60851 | Msa1429550:CDS | 35.0% |
| ! | TATTATACCTTTGGAGAGGA+GGG | - | tig0026517:60920-60939 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | - | tig0026517:60921-60940 | None:intergenic | 35.0% |
| ACAGAGACATTTGATATGCT+CGG | - | tig0026517:61239-61258 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | + | tig0026517:61391-61410 | Msa1429550:intron | 35.0% | |
| CATTGAAATTCATGCAGCAT+TGG | - | tig0026517:61462-61481 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | + | tig0026517:61689-61708 | Msa1429550:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | - | tig0026517:61705-61724 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | + | tig0026517:61703-61722 | Msa1429550:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | + | tig0026517:61729-61748 | Msa1429550:intron | 35.0% | |
| TATTAATAGCTGTCTACAGC+TGG | + | tig0026517:61979-61998 | Msa1429550:intron | 35.0% | |
| TAACTTTACCTGACCAATGA+AGG | + | tig0026517:62078-62097 | Msa1429550:intron | 35.0% | |
| TTGGTTGCTAATTCCTTCAT+TGG | - | tig0026517:62094-62113 | None:intergenic | 35.0% | |
| TCATTCAAAACGTAGGTCAT+AGG | - | tig0026517:62164-62183 | None:intergenic | 35.0% | |
| !! | TGACCTACGTTTTGAATGAA+AGG | + | tig0026517:62165-62184 | Msa1429550:intron | 35.0% |
| !! | GTCATTTACGATGTCGATTT+CGG | + | tig0026517:62284-62303 | Msa1429550:intron | 35.0% |
| CTGTTATTAATGGTAGCTGA+TGG | + | tig0026517:62340-62359 | Msa1429550:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | + | tig0026517:62355-62374 | Msa1429550:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | + | tig0026517:62387-62406 | Msa1429550:CDS | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | + | tig0026517:62431-62450 | Msa1429550:CDS | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | - | tig0026517:62467-62486 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | - | tig0026517:62497-62516 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | - | tig0026517:62554-62573 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | + | tig0026517:62615-62634 | Msa1429550:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | + | tig0026517:62616-62635 | Msa1429550:CDS | 35.0% |
| GCTTCAAATGAGACTTCAAG+AGG | + | tig0026517:60698-60717 | Msa1429550:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | + | tig0026517:60701-60720 | Msa1429550:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | + | tig0026517:60702-60721 | Msa1429550:CDS | 40.0% | |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | + | tig0026517:61191-61210 | Msa1429550:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | - | tig0026517:61238-61257 | None:intergenic | 40.0% | |
| ACATCACCAGCTGAATATTC+TGG | + | tig0026517:61924-61943 | Msa1429550:intron | 40.0% | |
| TGCTAATTCCTTCATTGGTC+AGG | - | tig0026517:62089-62108 | None:intergenic | 40.0% | |
| ACGCCTTTCATTCAAAACGT+AGG | - | tig0026517:62171-62190 | None:intergenic | 40.0% | |
| CAAAGCAACTTTACTAGCTG+AGG | + | tig0026517:62379-62398 | Msa1429550:CDS | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | + | tig0026517:62488-62507 | Msa1429550:CDS | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | + | tig0026517:62726-62745 | Msa1429550:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | + | tig0026517:62727-62746 | Msa1429550:CDS | 40.0% | |
| TCTTAACGAGTAATCCATCG+AGG | - | tig0026517:62759-62778 | None:intergenic | 40.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | + | tig0026517:60843-60862 | Msa1429550:CDS | 45.0% | |
| TACAAGCTATGGGACAGAAC+TGG | + | tig0026517:61417-61436 | Msa1429550:intron | 45.0% | |
| TCTTCGATGGTCCCAAACTA+AGG | + | tig0026517:61831-61850 | Msa1429550:intron | 45.0% | |
| TGCATCTGTTTGCAAAGACG+TGG | - | tig0026517:62785-62804 | None:intergenic | 45.0% | |
| !! | TAAACATTATAATTAAATTA+AGG | + | tig0026517:61677-61696 | Msa1429550:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | + | tig0026517:61678-61697 | Msa1429550:intron | 5.0% |
| !!! | TCTTATTTATTTATTTTTTA+AGG | - | tig0026517:62129-62148 | None:intergenic | 5.0% |
| !! | AAAAAATAAATAAATAAGAT+AGG | + | tig0026517:62130-62149 | Msa1429550:intron | 5.0% |
| ACTTGTTCCCTCCTCTCCAA+AGG | + | tig0026517:60910-60929 | Msa1429550:CDS | 50.0% | |
| ! | CAGCTGGTGATGTGAAGTGT+GGG | - | tig0026517:61917-61936 | None:intergenic | 50.0% |
| ! | TCAGCTGGTGATGTGAAGTG+TGG | - | tig0026517:61918-61937 | None:intergenic | 50.0% |
| TGAGGGCCAGAATATTCAGC+TGG | - | tig0026517:61933-61952 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | - | tig0026517:62724-62743 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | + | tig0026517:62721-62740 | Msa1429550:CDS | 50.0% | |
| GGAAAGGGTTTCTACCTCGA+TGG | + | tig0026517:62742-62761 | Msa1429550:CDS | 50.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | - | tig0026517:60907-60926 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026517 | gene | 60638 | 62850 | 60638 | ID=Msa1429550;Name=Msa1429550 |
| tig0026517 | mRNA | 60638 | 62850 | 60638 | ID=Msa1429550-mRNA-1;Parent=Msa1429550;Name=Msa1429550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|256 |
| tig0026517 | exon | 60638 | 60931 | 60638 | ID=Msa1429550-mRNA-1:exon:6557;Parent=Msa1429550-mRNA-1 |
| tig0026517 | exon | 62374 | 62850 | 62374 | ID=Msa1429550-mRNA-1:exon:6558;Parent=Msa1429550-mRNA-1 |
| tig0026517 | CDS | 60638 | 60931 | 60638 | ID=Msa1429550-mRNA-1:cds;Parent=Msa1429550-mRNA-1 |
| tig0026517 | CDS | 62374 | 62850 | 62374 | ID=Msa1429550-mRNA-1:cds;Parent=Msa1429550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
