Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273610 | XP_013462544.1 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 5.91e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273610 | sp|Q9LET0|BH107_ARATH | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 1.20e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273610 | A0A072V5E0 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 2.82e-178 | 499 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0273610 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062010 | Msa0273610 | 0.834372 | 3.112874e-56 | -8.615850e-47 |
| Msa0108350 | Msa0273610 | 0.810374 | 1.189632e-50 | -8.615850e-47 |
| Msa0222140 | Msa0273610 | 0.904682 | 9.507234e-80 | -8.615850e-47 |
| Msa0235100 | Msa0273610 | 0.822347 | 2.486307e-53 | -8.615850e-47 |
| Msa0273610 | Msa0277520 | 0.802962 | 4.374162e-49 | -8.615850e-47 |
| Msa0273610 | Msa0278460 | 0.805046 | 1.612797e-49 | -8.615850e-47 |
| Msa0273610 | Msa0313830 | 0.966843 | 1.826232e-126 | -8.615850e-47 |
| Msa0273610 | Msa0328090 | 0.808370 | 3.202468e-50 | -8.615850e-47 |
| Msa0273610 | Msa0390160 | 0.800974 | 1.120372e-48 | -8.615850e-47 |
| Msa0273610 | Msa0390170 | 0.800484 | 1.410578e-48 | -8.615850e-47 |
| Msa0273610 | Msa0448190 | 0.825743 | 3.968689e-54 | -8.615850e-47 |
| Msa0273610 | Msa0496070 | 0.803746 | 3.008496e-49 | -8.615850e-47 |
| Msa0273610 | Msa0535570 | 0.804194 | 2.428815e-49 | -8.615850e-47 |
| Msa0273610 | Msa0591490 | 0.808584 | 2.883164e-50 | -8.615850e-47 |
| Msa0273610 | Msa0643840 | 0.800795 | 1.218587e-48 | -8.615850e-47 |
| Msa0273610 | Msa0956450 | 0.802961 | 4.375734e-49 | -8.615850e-47 |
| Msa0273610 | Msa1022510 | 0.813400 | 2.609095e-51 | -8.615850e-47 |
| Msa0273610 | Msa1079820 | 0.802488 | 5.479303e-49 | -8.615850e-47 |
| Msa0273610 | Msa1106680 | 0.806206 | 9.206899e-50 | -8.615850e-47 |
| Msa0273610 | Msa1181090 | 0.806654 | 7.405267e-50 | -8.615850e-47 |
| Msa0273610 | Msa1429550 | 0.917726 | 3.733559e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273610 | MtrunA17_Chr4g0045901 | 56.828 | 227 | 94 | 2 | 11 | 233 | 19 | 245 | 7.79e-71 | 218 |
| Msa0273610 | MtrunA17_Chr2g0283714 | 69.620 | 158 | 8 | 1 | 99 | 256 | 16 | 133 | 4.69e-69 | 209 |
| Msa0273610 | MtrunA17_Chr4g0041051 | 47.727 | 220 | 109 | 4 | 19 | 234 | 21 | 238 | 1.47e-53 | 174 |
| Msa0273610 | MtrunA17_Chr2g0325521 | 49.268 | 205 | 98 | 3 | 29 | 229 | 23 | 225 | 1.33e-52 | 171 |
| Msa0273610 | MtrunA17_Chr7g0255961 | 36.957 | 184 | 107 | 3 | 62 | 241 | 70 | 248 | 1.34e-30 | 114 |
| Msa0273610 | MtrunA17_Chr3g0113721 | 38.506 | 174 | 88 | 4 | 67 | 227 | 39 | 206 | 1.69e-28 | 108 |
| Msa0273610 | MtrunA17_Chr1g0198801 | 48.201 | 139 | 65 | 1 | 63 | 194 | 154 | 292 | 2.94e-28 | 110 |
| Msa0273610 | MtrunA17_Chr5g0412371 | 37.857 | 140 | 80 | 2 | 56 | 189 | 34 | 172 | 1.14e-22 | 92.4 |
| Msa0273610 | MtrunA17_Chr5g0427361 | 32.883 | 222 | 118 | 4 | 63 | 254 | 33 | 253 | 3.36e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273610 | AT3G56770.1 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 1.22e-30 | 114 |
| Msa0273610 | AT2G40200.1 | 38.889 | 162 | 91 | 2 | 69 | 224 | 65 | 224 | 6.97e-30 | 112 |
| Msa0273610 | AT1G68810.1 | 43.605 | 172 | 91 | 4 | 56 | 223 | 164 | 333 | 2.87e-28 | 110 |
| Msa0273610 | AT2G41130.1 | 34.529 | 223 | 130 | 5 | 17 | 228 | 11 | 228 | 8.37e-27 | 104 |
| Msa0273610 | AT3G25710.1 | 44.118 | 136 | 73 | 2 | 56 | 189 | 122 | 256 | 2.40e-24 | 100 |
| Msa0273610 | AT4G38070.1 | 34.959 | 123 | 76 | 2 | 66 | 188 | 91 | 209 | 7.11e-17 | 78.2 |
Find 46 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACAATGTCAACTTAT+TGG | 0.161618 | 2_3:-5192486 | Msa0273610:CDS |
| CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | 2_3:-5192785 | Msa0273610:CDS |
| ATCAACAAACTCATTGGTTT+TGG | 0.255474 | 2_3:-5194490 | Msa0273610:CDS |
| CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | 2_3:+5192621 | None:intergenic |
| AAGTCCCCTCCAATAATTAA+TGG | 0.304566 | 2_3:-5194444 | Msa0273610:CDS |
| AATGCCACTTCATATAGATT+TGG | 0.335342 | 2_3:-5194546 | Msa0273610:CDS |
| TAGTGGCTCTGAAGAATCAT+AGG | 0.340919 | 2_3:-5194389 | Msa0273610:CDS |
| TGATGCTAACAAAACTTTAG+TGG | 0.343142 | 2_3:-5194406 | Msa0273610:CDS |
| AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | 2_3:-5194354 | Msa0273610:CDS |
| TGATAAACTTCAACTACAAT+TGG | 0.375139 | 2_3:-5192589 | Msa0273610:CDS |
| CCAGTACAGAACTCAGTTCC+TGG | 0.377817 | 2_3:+5192451 | None:intergenic |
| AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | 2_3:-5192687 | Msa0273610:CDS |
| AAGGGAAGAAATATCAACTT+TGG | 0.396844 | 2_3:-5192565 | Msa0273610:CDS |
| AAATATCAACTTTGGGAGAC+AGG | 0.404598 | 2_3:-5192557 | Msa0273610:CDS |
| TTCACTTCATCATCATCTGT+TGG | 0.414183 | 2_3:+5192708 | None:intergenic |
| GTTTGTATCAACAAACTCAT+TGG | 0.426459 | 2_3:-5194496 | Msa0273610:CDS |
| TTCTCTCCATTAATTATTGG+AGG | 0.433494 | 2_3:+5194438 | None:intergenic |
| AGGGAAGAAATATCAACTTT+GGG | 0.445016 | 2_3:-5192564 | Msa0273610:CDS |
| AACTTCAACTACAATTGGTA+AGG | 0.473092 | 2_3:-5192584 | Msa0273610:CDS |
| CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | 2_3:-5192451 | Msa0273610:CDS |
| ACTGAGTTCTGTACTGGAAA+GGG | 0.489265 | 2_3:-5192445 | Msa0273610:CDS |
| CTCTCCATTAATTATTGGAG+GGG | 0.498785 | 2_3:+5194440 | None:intergenic |
| TATTATACCTTTGGAGAGGA+GGG | 0.509382 | 2_3:+5194303 | None:intergenic |
| ATTCTAGCTCTGATATTTCG+AGG | 0.523502 | 2_3:-5194578 | Msa0273610:CDS |
| CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | 2_3:-5194518 | Msa0273610:CDS |
| TCTCTCCATTAATTATTGGA+GGG | 0.544195 | 2_3:+5194439 | None:intergenic |
| TTATTATACCTTTGGAGAGG+AGG | 0.544800 | 2_3:+5194302 | None:intergenic |
| AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | 2_3:-5192446 | Msa0273610:CDS |
| CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | 2_3:-5192793 | Msa0273610:CDS |
| AGTGGCTCTGAAGAATCATA+GGG | 0.564496 | 2_3:-5194388 | Msa0273610:CDS |
| AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | 2_3:-5192741 | Msa0273610:CDS |
| ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | 2_3:-5194310 | Msa0273610:intron |
| GGAAAGGGTTTCTACCTCGA+TGG | 0.569167 | 2_3:-5192430 | Msa0273610:CDS |
| AGCACCAAATCTATATGAAG+TGG | 0.573695 | 2_3:+5194542 | None:intergenic |
| AATATCAACTTTGGGAGACA+GGG | 0.583527 | 2_3:-5192556 | Msa0273610:CDS |
| TATTGGAAATAATGTTCACC+AGG | 0.592874 | 2_3:-5192469 | Msa0273610:CDS |
| TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | 2_3:-5194519 | Msa0273610:CDS |
| AGATTATTATACCTTTGGAG+AGG | 0.615783 | 2_3:+5194299 | None:intergenic |
| ACTTCAACTACAATTGGTAA+GGG | 0.620942 | 2_3:-5192583 | Msa0273610:CDS |
| ATCAACAAGAGCAAAACTCA+TGG | 0.629280 | 2_3:+5192343 | None:intergenic |
| GTTGAACCATGTGAAAATGG+TGG | 0.637388 | 2_3:-5192684 | Msa0273610:CDS |
| TGCATCTGTTTGCAAAGACG+TGG | 0.639661 | 2_3:+5192390 | None:intergenic |
| GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | 2_3:+5194316 | None:intergenic |
| GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | 2_3:-5194522 | Msa0273610:CDS |
| AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | 2_3:-5194377 | Msa0273610:CDS |
| TCTTAACGAGTAATCCATCG+AGG | 0.765808 | 2_3:+5192416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAAGGATTATTAAA+TGG | + | chr2_3:5193871-5193890 | None:intergenic | 10.0% |
| !!! | CCTTATTTATTTATTTTTTA+AGG | + | chr2_3:5193883-5193902 | None:intergenic | 10.0% |
| !! | CCTTAAAAAATAAATAAATA+AGG | - | chr2_3:5193880-5193899 | Msa0273610:intron | 10.0% |
| !! | AAAAAATAAATAAATAAGGT+AGG | - | chr2_3:5193884-5193903 | Msa0273610:intron | 10.0% |
| !! | TATAAAAAATACGAAAAGAA+AGG | + | chr2_3:5192654-5192673 | None:intergenic | 15.0% |
| !!! | ACTTCGTTATATTTTTTTAA+GGG | - | chr2_3:5192703-5192722 | Msa0273610:CDS | 15.0% |
| !!! | ATTGTTATCTGATTTTAAAA+AGG | - | chr2_3:5192871-5192890 | Msa0273610:intron | 15.0% |
| !!! | TAGTATTAATTTATTTGTTG+TGG | - | chr2_3:5193789-5193808 | Msa0273610:intron | 15.0% |
| !!! | TTTTTCTCTCCATTAATTAT+TGG | + | chr2_3:5192494-5192513 | None:intergenic | 20.0% |
| !!! | CACTTCGTTATATTTTTTTA+AGG | - | chr2_3:5192702-5192721 | Msa0273610:CDS | 20.0% |
| !! | TATCTCTTTAAATATCTTTG+TGG | - | chr2_3:5192758-5192777 | Msa0273610:CDS | 20.0% |
| !! | AAACTGTAAAAAAGTTCAAT+TGG | + | chr2_3:5192825-5192844 | None:intergenic | 20.0% |
| !! | CTGAAAAAATACATTTACTT+AGG | - | chr2_3:5193067-5193086 | Msa0273610:intron | 20.0% |
| !! | ACTATAATGTAACATCATAT+TGG | - | chr2_3:5193532-5193551 | Msa0273610:intron | 20.0% |
| !!! | TATTAATTTATTTGTTGTGG+TGG | - | chr2_3:5193792-5193811 | Msa0273610:intron | 20.0% |
| !!! | ATTAATTTATTTGTTGTGGT+GGG | - | chr2_3:5193793-5193812 | Msa0273610:intron | 20.0% |
| !! | TTTAAGGATTATTAAATGGT+TGG | + | chr2_3:5193867-5193886 | None:intergenic | 20.0% |
| !! | TATGTACATACTGTTATTAA+TGG | - | chr2_3:5194084-5194103 | Msa0273610:intron | 20.0% |
| ! | AAGAGAAGAAACAGAATTAA+TGG | - | chr2_3:5192572-5192591 | Msa0273610:CDS | 25.0% |
| ! | AAGGAAGATTATTATACCTT+TGG | + | chr2_3:5192635-5192654 | None:intergenic | 25.0% |
| !! | TTATAAACATGTTTTACCGA+TGG | - | chr2_3:5192795-5192814 | Msa0273610:CDS | 25.0% |
| ! | ATTCCTAATTGCAACTTAAT+TGG | + | chr2_3:5193263-5193282 | None:intergenic | 25.0% |
| ! | ATGAAACAAAACCTTAGTTT+GGG | + | chr2_3:5193595-5193614 | None:intergenic | 25.0% |
| ! | AATGAAACAAAACCTTAGTT+TGG | + | chr2_3:5193596-5193615 | None:intergenic | 25.0% |
| ! | TAACAAATGATTCTTAGTTG+TGG | - | chr2_3:5193642-5193661 | Msa0273610:intron | 25.0% |
| ! | AACAAATGATTCTTAGTTGT+GGG | - | chr2_3:5193643-5193662 | Msa0273610:intron | 25.0% |
| ! | TGATAAACTTCAACTACAAT+TGG | - | chr2_3:5194337-5194356 | Msa0273610:CDS | 25.0% |
| ! | ATTGAACAATGTCAACTTAT+TGG | - | chr2_3:5194440-5194459 | Msa0273610:CDS | 25.0% |
| ! | AATGCCACTTCATATAGATT+TGG | - | chr2_3:5192380-5192399 | Msa0273610:CDS | 30.0% |
| GTTTGTATCAACAAACTCAT+TGG | - | chr2_3:5192430-5192449 | Msa0273610:CDS | 30.0% | |
| !!! | ATCAACAAACTCATTGGTTT+TGG | - | chr2_3:5192436-5192455 | Msa0273610:CDS | 30.0% |
| TCTCTCCATTAATTATTGGA+GGG | + | chr2_3:5192490-5192509 | None:intergenic | 30.0% | |
| TTCTCTCCATTAATTATTGG+AGG | + | chr2_3:5192491-5192510 | None:intergenic | 30.0% | |
| TGATGCTAACAAAACTTTAG+TGG | - | chr2_3:5192520-5192539 | Msa0273610:CDS | 30.0% | |
| ! | AGATTATTATACCTTTGGAG+AGG | + | chr2_3:5192630-5192649 | None:intergenic | 30.0% |
| ACACAATGATCGAATATGAT+TGG | + | chr2_3:5192682-5192701 | None:intergenic | 30.0% | |
| AAGTTCAATTGGTAAACCAT+CGG | + | chr2_3:5192814-5192833 | None:intergenic | 30.0% | |
| !! | TCTGATTTTAAAAAGGCTAG+CGG | - | chr2_3:5192878-5192897 | Msa0273610:intron | 30.0% |
| ATTGATGGAAATACAAGCTA+TGG | - | chr2_3:5193124-5193143 | Msa0273610:intron | 30.0% | |
| TTGATGGAAATACAAGCTAT+GGG | - | chr2_3:5193125-5193144 | Msa0273610:intron | 30.0% | |
| TTGAAATTCATGCAGCATTT+GGG | + | chr2_3:5193179-5193198 | None:intergenic | 30.0% | |
| ATTGAAATTCATGCAGCATT+TGG | + | chr2_3:5193180-5193199 | None:intergenic | 30.0% | |
| ! | ACACCAATTAAGTTGCAATT+AGG | - | chr2_3:5193257-5193276 | Msa0273610:intron | 30.0% |
| ! | TTGACTGGTCAAATGTATAT+GGG | - | chr2_3:5193454-5193473 | Msa0273610:intron | 30.0% |
| ! | CCTTATATAGTTGACTTTAG+CGG | + | chr2_3:5193482-5193501 | None:intergenic | 30.0% |
| AAGTCAACTATATAAGGTTG+TGG | - | chr2_3:5193485-5193504 | Msa0273610:intron | 30.0% | |
| ! | TTTTGCAGATTTATCTTCGA+TGG | - | chr2_3:5193568-5193587 | Msa0273610:intron | 30.0% |
| !! | CAGAAAGAATGATTTGTTGA+GGG | + | chr2_3:5193702-5193721 | None:intergenic | 30.0% |
| !! | TCAGAAAGAATGATTTGTTG+AGG | + | chr2_3:5193703-5193722 | None:intergenic | 30.0% |
| ! | TTTGGTTTCTAATATGCGTT+AGG | - | chr2_3:5193946-5193965 | Msa0273610:intron | 30.0% |
| TTGGTTTCTAATATGCGTTA+GGG | - | chr2_3:5193947-5193966 | Msa0273610:intron | 30.0% | |
| TATGCGTTAGGGTTTAATAT+CGG | - | chr2_3:5193958-5193977 | Msa0273610:intron | 30.0% | |
| !! | GTCATTTACGATGTTGATTT+CGG | - | chr2_3:5194038-5194057 | Msa0273610:intron | 30.0% |
| AAAGTTGAACCATGTGAAAA+TGG | - | chr2_3:5194239-5194258 | Msa0273610:intron | 30.0% | |
| AACTTCAACTACAATTGGTA+AGG | - | chr2_3:5194342-5194361 | Msa0273610:CDS | 30.0% | |
| ACTTCAACTACAATTGGTAA+GGG | - | chr2_3:5194343-5194362 | Msa0273610:CDS | 30.0% | |
| AAGGGAAGAAATATCAACTT+TGG | - | chr2_3:5194361-5194380 | Msa0273610:CDS | 30.0% | |
| AGGGAAGAAATATCAACTTT+GGG | - | chr2_3:5194362-5194381 | Msa0273610:CDS | 30.0% | |
| TATTGGAAATAATGTTCACC+AGG | - | chr2_3:5194457-5194476 | Msa0273610:CDS | 30.0% | |
| !! | ATTCTAGCTCTGATATTTCG+AGG | - | chr2_3:5192348-5192367 | Msa0273610:CDS | 35.0% |
| AGCACCAAATCTATATGAAG+TGG | + | chr2_3:5192387-5192406 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATAGTGAGAA+AGG | - | chr2_3:5192449-5192468 | Msa0273610:CDS | 35.0% |
| AAGTCCCCTCCAATAATTAA+TGG | - | chr2_3:5192482-5192501 | Msa0273610:CDS | 35.0% | |
| CTCTCCATTAATTATTGGAG+GGG | + | chr2_3:5192489-5192508 | None:intergenic | 35.0% | |
| ! | TATTATACCTTTGGAGAGGA+GGG | + | chr2_3:5192626-5192645 | None:intergenic | 35.0% |
| ! | TTATTATACCTTTGGAGAGG+AGG | + | chr2_3:5192627-5192646 | None:intergenic | 35.0% |
| ACAGAGACATTTGATATGCT+CGG | + | chr2_3:5192957-5192976 | None:intergenic | 35.0% | |
| AGCTGAAGTTTGAAGATTGA+TGG | - | chr2_3:5193109-5193128 | Msa0273610:intron | 35.0% | |
| TGATGGAAATACAAGCTATG+GGG | - | chr2_3:5193126-5193145 | Msa0273610:intron | 35.0% | |
| CTTTAACTCTCAGAATGTGT+TGG | + | chr2_3:5193406-5193425 | None:intergenic | 35.0% | |
| TTAAATTAAGGGTCCTTGAC+TGG | - | chr2_3:5193439-5193458 | Msa0273610:intron | 35.0% | |
| CATATACATTTGACCAGTCA+AGG | + | chr2_3:5193455-5193474 | None:intergenic | 35.0% | |
| ! | CTTGACTGGTCAAATGTATA+TGG | - | chr2_3:5193453-5193472 | Msa0273610:intron | 35.0% |
| CCGCTAAAGTCAACTATATA+AGG | - | chr2_3:5193479-5193498 | Msa0273610:intron | 35.0% | |
| TATTAATAGCTGTCAACAGC+TGG | - | chr2_3:5193731-5193750 | Msa0273610:intron | 35.0% | |
| TAACTTTACCTGACCAATGA+AGG | - | chr2_3:5193831-5193850 | Msa0273610:intron | 35.0% | |
| ! | CTTTGAATGAAAGGCGTATT+TGG | - | chr2_3:5193928-5193947 | Msa0273610:intron | 35.0% |
| CTGTTATTAATGGTAGCTGA+TGG | - | chr2_3:5194094-5194113 | Msa0273610:intron | 35.0% | |
| GCTGATGGTATTCTTATAGA+TGG | - | chr2_3:5194109-5194128 | Msa0273610:intron | 35.0% | |
| CTTTACTAGCTGAGGTTATT+AGG | - | chr2_3:5194141-5194160 | Msa0273610:intron | 35.0% | |
| AATGCAGATGAAGCAAGTAA+AGG | - | chr2_3:5194185-5194204 | Msa0273610:intron | 35.0% | |
| TTCACTTCATCATCATCTGT+TGG | + | chr2_3:5194221-5194240 | None:intergenic | 35.0% | |
| ! | AATGATCCACCATTTTCACA+TGG | + | chr2_3:5194251-5194270 | None:intergenic | 35.0% |
| CTTAGATCAGTTAGAAGTTC+TGG | + | chr2_3:5194308-5194327 | None:intergenic | 35.0% | |
| ! | AAATATCAACTTTGGGAGAC+AGG | - | chr2_3:5194369-5194388 | Msa0273610:CDS | 35.0% |
| ! | AATATCAACTTTGGGAGACA+GGG | - | chr2_3:5194370-5194389 | Msa0273610:CDS | 35.0% |
| GCTTCAAATGAGACTTCAAG+AGG | - | chr2_3:5192404-5192423 | Msa0273610:CDS | 40.0% | |
| TCAAATGAGACTTCAAGAGG+TGG | - | chr2_3:5192407-5192426 | Msa0273610:CDS | 40.0% | |
| CAAATGAGACTTCAAGAGGT+GGG | - | chr2_3:5192408-5192427 | Msa0273610:CDS | 40.0% | |
| !! | TAGTGGCTCTGAAGAATCAT+AGG | - | chr2_3:5192537-5192556 | Msa0273610:CDS | 40.0% |
| !! | AGTGGCTCTGAAGAATCATA+GGG | - | chr2_3:5192538-5192557 | Msa0273610:CDS | 40.0% |
| !! | ACAATAAGTGCTGAGAAGCA+AGG | - | chr2_3:5192909-5192928 | Msa0273610:intron | 40.0% |
| CAGAGACATTTGATATGCTC+GGG | + | chr2_3:5192956-5192975 | None:intergenic | 40.0% | |
| ! | AGAATATTCAGCTGGTGATG+TGG | + | chr2_3:5193677-5193696 | None:intergenic | 40.0% |
| ACATCACCAGCTGAATATTC+TGG | - | chr2_3:5193676-5193695 | Msa0273610:intron | 40.0% | |
| ACCTGACCAATGAAGGAATT+AGG | - | chr2_3:5193838-5193857 | Msa0273610:intron | 40.0% | |
| TGGTTGCCTAATTCCTTCAT+TGG | + | chr2_3:5193847-5193866 | None:intergenic | 40.0% | |
| TCATTCAAAGCGTAGGTCAT+AGG | + | chr2_3:5193918-5193937 | None:intergenic | 40.0% | |
| ! | TGACCTACGCTTTGAATGAA+AGG | - | chr2_3:5193919-5193938 | Msa0273610:intron | 40.0% |
| CAAAGCAACTTTACTAGCTG+AGG | - | chr2_3:5194133-5194152 | Msa0273610:intron | 40.0% | |
| GTTGAACCATGTGAAAATGG+TGG | - | chr2_3:5194242-5194261 | Msa0273610:intron | 40.0% | |
| AACTGAGTTCTGTACTGGAA+AGG | - | chr2_3:5194480-5194499 | Msa0273610:CDS | 40.0% | |
| ACTGAGTTCTGTACTGGAAA+GGG | - | chr2_3:5194481-5194500 | Msa0273610:CDS | 40.0% | |
| TCTTAACGAGTAATCCATCG+AGG | + | chr2_3:5194513-5194532 | None:intergenic | 40.0% | |
| AGAATCATAGGGAAGCAGAG+AGG | - | chr2_3:5192549-5192568 | Msa0273610:CDS | 45.0% | |
| ! | CTCTCAGAATGTGTTGGTGA+TGG | + | chr2_3:5193378-5193397 | None:intergenic | 45.0% |
| GTGATGCTCTCAGAATGTGT+TGG | + | chr2_3:5193384-5193403 | None:intergenic | 45.0% | |
| TCTTCGATGGTCCCAAACTA+AGG | - | chr2_3:5193581-5193600 | Msa0273610:intron | 45.0% | |
| GCCTAATTCCTTCATTGGTC+AGG | + | chr2_3:5193842-5193861 | None:intergenic | 45.0% | |
| ACGCCTTTCATTCAAAGCGT+AGG | + | chr2_3:5193925-5193944 | None:intergenic | 45.0% | |
| TGCATCTGTTTGCAAAGACG+TGG | + | chr2_3:5194539-5194558 | None:intergenic | 45.0% | |
| !! | TAAACATTATAATTAAATTA+AGG | - | chr2_3:5193427-5193446 | Msa0273610:intron | 5.0% |
| !! | AAACATTATAATTAAATTAA+GGG | - | chr2_3:5193428-5193447 | Msa0273610:intron | 5.0% |
| ACTTGTTCCCTCCTCTCCAA+AGG | - | chr2_3:5192616-5192635 | Msa0273610:CDS | 50.0% | |
| TACAAGCTATGGGGCAGAAC+TGG | - | chr2_3:5193135-5193154 | Msa0273610:intron | 50.0% | |
| TGAGGGCCAGAATATTCAGC+TGG | + | chr2_3:5193685-5193704 | None:intergenic | 50.0% | |
| CCAGTACAGAACTCAGTTCC+TGG | + | chr2_3:5194478-5194497 | None:intergenic | 50.0% | |
| CCAGGAACTGAGTTCTGTAC+TGG | - | chr2_3:5194475-5194494 | Msa0273610:CDS | 50.0% | |
| GGAAAGGGTTTCTACCTCGA+TGG | - | chr2_3:5194496-5194515 | Msa0273610:CDS | 50.0% | |
| GAGAGGAGGGAACAAGTGCA+CGG | + | chr2_3:5192613-5192632 | None:intergenic | 55.0% | |
| ! | CAGCTGGTGATGTGGAGTGT+GGG | + | chr2_3:5193669-5193688 | None:intergenic | 55.0% |
| ! | TCAGCTGGTGATGTGGAGTG+TGG | + | chr2_3:5193670-5193689 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 5192344 | 5194604 | 5192344 | ID=Msa0273610;Name=Msa0273610 |
| chr2_3 | mRNA | 5192344 | 5194604 | 5192344 | ID=Msa0273610-mRNA-1;Parent=Msa0273610;Name=Msa0273610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|256 |
| chr2_3 | exon | 5194311 | 5194604 | 5194311 | ID=Msa0273610-mRNA-1:exon:2546;Parent=Msa0273610-mRNA-1 |
| chr2_3 | exon | 5192344 | 5192820 | 5192344 | ID=Msa0273610-mRNA-1:exon:2545;Parent=Msa0273610-mRNA-1 |
| chr2_3 | CDS | 5194311 | 5194604 | 5194311 | ID=Msa0273610-mRNA-1:cds;Parent=Msa0273610-mRNA-1 |
| chr2_3 | CDS | 5192344 | 5192820 | 5192344 | ID=Msa0273610-mRNA-1:cds;Parent=Msa0273610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
