Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014320 | XP_003622294.1 | 96.982 | 729 | 22 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014320 | sp|Q9SS87|SEOB_ARATH | 46.154 | 728 | 368 | 12 | 3 | 717 | 19 | 735 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014320 | Q2HUY0 | 96.982 | 729 | 22 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1478 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1014320 | 0.918833 | 9.561217e-87 | -8.615850e-47 |
| Msa0025160 | Msa1014320 | 0.802808 | 4.705204e-49 | -8.615850e-47 |
| Msa0029960 | Msa1014320 | 0.854433 | 1.235198e-61 | -8.615850e-47 |
| Msa0029970 | Msa1014320 | 0.828480 | 8.783108e-55 | -8.615850e-47 |
| Msa0029990 | Msa1014320 | 0.873483 | 1.420235e-67 | -8.615850e-47 |
| Msa0034210 | Msa1014320 | 0.802131 | 6.489269e-49 | -8.615850e-47 |
| Msa0043290 | Msa1014320 | 0.836474 | 9.160210e-57 | -8.615850e-47 |
| Msa0050700 | Msa1014320 | 0.802740 | 4.860231e-49 | -8.615850e-47 |
| Msa0064120 | Msa1014320 | 0.903320 | 3.920232e-79 | -8.615850e-47 |
| Msa0071840 | Msa1014320 | 0.876241 | 1.633105e-68 | -8.615850e-47 |
| Msa0071850 | Msa1014320 | 0.855935 | 4.517093e-62 | -8.615850e-47 |
| Msa0071860 | Msa1014320 | 0.849502 | 3.102767e-60 | -8.615850e-47 |
| Msa0071880 | Msa1014320 | 0.804535 | 2.061772e-49 | -8.615850e-47 |
| Msa0088520 | Msa1014320 | 0.800908 | 1.155523e-48 | -8.615850e-47 |
| Msa0108880 | Msa1014320 | 0.917846 | 3.226655e-86 | -8.615850e-47 |
| Msa0609300 | Msa1014320 | 0.857709 | 1.356665e-62 | -8.615850e-47 |
| Msa0649840 | Msa1014320 | 0.858983 | 5.663836e-63 | -8.615850e-47 |
| Msa0655700 | Msa1014320 | 0.812448 | 4.217470e-51 | -8.615850e-47 |
| Msa0655910 | Msa1014320 | 0.821497 | 3.911995e-53 | -8.615850e-47 |
| Msa0691910 | Msa1014320 | 0.866281 | 3.197028e-65 | -8.615850e-47 |
| Msa0693890 | Msa1014320 | 0.818174 | 2.249694e-52 | -8.615850e-47 |
| Msa0699840 | Msa1014320 | 0.802679 | 5.002820e-49 | -8.615850e-47 |
| Msa0736440 | Msa1014320 | 0.827214 | 1.770542e-54 | -8.615850e-47 |
| Msa0738700 | Msa1014320 | 0.832082 | 1.158151e-55 | -8.615850e-47 |
| Msa0740090 | Msa1014320 | 0.863317 | 2.713651e-64 | -8.615850e-47 |
| Msa0782750 | Msa1014320 | 0.862634 | 4.410292e-64 | -8.615850e-47 |
| Msa0800200 | Msa1014320 | 0.800762 | 1.237580e-48 | -8.615850e-47 |
| Msa0820380 | Msa1014320 | 0.863332 | 2.685666e-64 | -8.615850e-47 |
| Msa0125200 | Msa1014320 | 0.853421 | 2.416291e-61 | -8.615850e-47 |
| Msa0125210 | Msa1014320 | 0.847536 | 1.086925e-59 | -8.615850e-47 |
| Msa0128310 | Msa1014320 | 0.806595 | 7.621096e-50 | -8.615850e-47 |
| Msa0137210 | Msa1014320 | 0.806588 | 7.648423e-50 | -8.615850e-47 |
| Msa0155180 | Msa1014320 | 0.908931 | 9.964475e-82 | -8.615850e-47 |
| Msa0179780 | Msa1014320 | 0.803731 | 3.031162e-49 | -8.615850e-47 |
| Msa0182400 | Msa1014320 | 0.828242 | 1.002531e-54 | -8.615850e-47 |
| Msa0230870 | Msa1014320 | 0.804427 | 2.171946e-49 | -8.615850e-47 |
| Msa0238720 | Msa1014320 | 0.815900 | 7.292682e-52 | -8.615850e-47 |
| Msa0382530 | Msa1014320 | 0.868600 | 5.787648e-66 | -8.615850e-47 |
| Msa0405680 | Msa1014320 | 0.803285 | 3.750041e-49 | -8.615850e-47 |
| Msa0415610 | Msa1014320 | 0.812021 | 5.226956e-51 | -8.615850e-47 |
| Msa0418970 | Msa1014320 | 0.853405 | 2.442789e-61 | -8.615850e-47 |
| Msa0420680 | Msa1014320 | 0.801196 | 1.009056e-48 | -8.615850e-47 |
| Msa0432320 | Msa1014320 | 0.863325 | 2.698260e-64 | -8.615850e-47 |
| Msa0451170 | Msa1014320 | 0.844241 | 8.542708e-59 | -8.615850e-47 |
| Msa0460550 | Msa1014320 | 0.852450 | 4.579545e-61 | -8.615850e-47 |
| Msa0460630 | Msa1014320 | 0.848964 | 4.380161e-60 | -8.615850e-47 |
| Msa0471460 | Msa1014320 | 0.808913 | 2.451313e-50 | -8.615850e-47 |
| Msa0471540 | Msa1014320 | 0.801665 | 8.088171e-49 | -8.615850e-47 |
| Msa1014320 | Msa1021780 | 0.845630 | 3.601468e-59 | -8.615850e-47 |
| Msa1014320 | Msa1040150 | 0.800880 | 1.171028e-48 | -8.615850e-47 |
| Msa1014320 | Msa1055310 | 0.939986 | 5.034541e-100 | -8.615850e-47 |
| Msa1014320 | Msa1078820 | 0.801578 | 8.428731e-49 | -8.615850e-47 |
| Msa1014320 | Msa1123970 | 0.801714 | 7.904176e-49 | -8.615850e-47 |
| Msa1014320 | Msa1125250 | 0.805161 | 1.525599e-49 | -8.615850e-47 |
| Msa1014320 | Msa1166190 | 0.805828 | 1.105333e-49 | -8.615850e-47 |
| Msa1014320 | Msa1166290 | 0.800529 | 1.380648e-48 | -8.615850e-47 |
| Msa1014320 | Msa1169650 | 0.800049 | 1.729440e-48 | -8.615850e-47 |
| Msa1014320 | Msa1187760 | 0.841681 | 4.101187e-58 | -8.615850e-47 |
| Msa1014320 | Msa1188170 | 0.843127 | 1.696616e-58 | -8.615850e-47 |
| Msa1014320 | Msa1209320 | 0.819142 | 1.356819e-52 | -8.615850e-47 |
| Msa1014320 | Msa1228630 | 0.809937 | 1.478013e-50 | -8.615850e-47 |
| Msa1014320 | Msa1255220 | 0.804411 | 2.188273e-49 | -8.615850e-47 |
| Msa1014320 | Msa1257340 | 0.833709 | 4.564342e-56 | -8.615850e-47 |
| Msa1014320 | Msa1262860 | 0.835684 | 1.454239e-56 | -8.615850e-47 |
| Msa1014320 | Msa1267050 | 0.805724 | 1.162357e-49 | -8.615850e-47 |
| Msa1014320 | Msa1267180 | 0.807851 | 4.130523e-50 | -8.615850e-47 |
| Msa1014320 | Msa1284120 | 0.800439 | 1.440501e-48 | -8.615850e-47 |
| Msa1014320 | Msa1290380 | 0.817047 | 4.037749e-52 | -8.615850e-47 |
| Msa1014320 | Msa1290440 | 0.810011 | 1.424532e-50 | -8.615850e-47 |
| Msa1014320 | Msa1341890 | 0.801730 | 7.844177e-49 | -8.615850e-47 |
| Msa1014320 | Msa1356220 | 0.830298 | 3.177274e-55 | -8.615850e-47 |
| Msa1014320 | Msa1356350 | 0.810210 | 1.291060e-50 | -8.615850e-47 |
| Msa1014320 | Msa1360930 | 0.803953 | 2.726007e-49 | -8.615850e-47 |
| Msa1014320 | Msa1404480 | 0.822360 | 2.469898e-53 | -8.615850e-47 |
| Msa1014320 | Msa1409410 | 0.816068 | 6.691021e-52 | -8.615850e-47 |
| Msa1014320 | Msa1410160 | 0.805564 | 1.256145e-49 | -8.615850e-47 |
| Msa1014320 | Msa1415540 | 0.808303 | 3.308847e-50 | -8.615850e-47 |
| Msa1014320 | Msa1429860 | 0.856787 | 2.539637e-62 | -8.615850e-47 |
| Msa1014320 | Msa1435630 | 0.870549 | 1.341366e-66 | -8.615850e-47 |
| Msa1014320 | Msa1452140 | 0.802640 | 5.097595e-49 | -8.615850e-47 |
| Msa0359010 | Msa1014320 | 0.840092 | 1.070436e-57 | -8.615850e-47 |
| Msa0486460 | Msa1014320 | 0.800570 | 1.354545e-48 | -8.615850e-47 |
| Msa0498610 | Msa1014320 | 0.828544 | 8.476322e-55 | -8.615850e-47 |
| Msa0525210 | Msa1014320 | 0.868716 | 5.308870e-66 | -8.615850e-47 |
| Msa0528570 | Msa1014320 | 0.805975 | 1.029423e-49 | -8.615850e-47 |
| Msa0562350 | Msa1014320 | 0.808570 | 2.903233e-50 | -8.615850e-47 |
| Msa0562560 | Msa1014320 | 0.832766 | 7.838063e-56 | -8.615850e-47 |
| Msa0562620 | Msa1014320 | 0.824028 | 1.007424e-53 | -8.615850e-47 |
| Msa0579780 | Msa1014320 | 0.848497 | 5.902359e-60 | -8.615850e-47 |
| Msa0600030 | Msa1014320 | 0.816566 | 5.177066e-52 | -8.615850e-47 |
| Msa0849650 | Msa1014320 | 0.810713 | 1.005292e-50 | -8.615850e-47 |
| Msa0859290 | Msa1014320 | 0.827546 | 1.473561e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014320 | MtrunA17_Chr7g0226571 | 96.982 | 729 | 22 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1478 |
| Msa1014320 | MtrunA17_Chr3g0116601 | 44.979 | 707 | 376 | 10 | 6 | 709 | 8 | 704 | 0.0 | 598 |
| Msa1014320 | MtrunA17_Chr8g0381301 | 44.509 | 692 | 371 | 10 | 26 | 711 | 20 | 704 | 0.0 | 589 |
| Msa1014320 | MtrunA17_Chr1g0186851 | 33.815 | 692 | 403 | 18 | 25 | 713 | 24 | 663 | 1.40e-118 | 370 |
| Msa1014320 | MtrunA17_Chr1g0186841 | 32.639 | 720 | 419 | 17 | 1 | 711 | 1 | 663 | 5.28e-118 | 369 |
| Msa1014320 | MtrunA17_Chr1g0187041 | 33.797 | 719 | 407 | 22 | 10 | 713 | 1 | 665 | 5.50e-115 | 361 |
| Msa1014320 | MtrunA17_Chr1g0186861 | 31.838 | 691 | 416 | 18 | 25 | 711 | 24 | 663 | 7.85e-108 | 342 |
| Msa1014320 | MtrunA17_Chr1g0186911 | 33.056 | 602 | 344 | 16 | 118 | 711 | 11 | 561 | 7.54e-104 | 329 |
| Msa1014320 | MtrunA17_Chr1g0165791 | 30.946 | 698 | 419 | 23 | 26 | 710 | 30 | 677 | 8.84e-96 | 311 |
| Msa1014320 | MtrunA17_Chr1g0186991 | 26.806 | 720 | 422 | 27 | 20 | 713 | 29 | 669 | 1.28e-63 | 224 |
| Msa1014320 | MtrunA17_Chr1g0187001 | 26.483 | 725 | 419 | 25 | 14 | 713 | 3 | 638 | 6.38e-58 | 208 |
| Msa1014320 | MtrunA17_Chr1g0186981 | 27.673 | 636 | 369 | 22 | 104 | 712 | 93 | 664 | 8.68e-54 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014320 | AT3G01680.1 | 46.154 | 728 | 368 | 12 | 3 | 717 | 19 | 735 | 0.0 | 656 |
| Msa1014320 | AT3G01670.1 | 34.747 | 731 | 417 | 17 | 8 | 709 | 121 | 820 | 1.14e-128 | 402 |
| Msa1014320 | AT3G01670.2 | 34.747 | 731 | 417 | 17 | 8 | 709 | 145 | 844 | 1.25e-128 | 402 |
| Msa1014320 | AT1G67790.1 | 28.713 | 707 | 425 | 24 | 27 | 707 | 11 | 664 | 1.39e-79 | 268 |
Find 152 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCCTACAAGATTCTTTC+TGG | 0.178003 | 7_1:-22825614 | Msa1014320:CDS |
| AAACAAACAAACAAACATTT+AGG | 0.205792 | 7_1:+22822436 | None:intergenic |
| GACTTGTTTCAGTTGGATTT+TGG | 0.208899 | 7_1:+22822960 | None:intergenic |
| ACAGCTTTCAAGGAACATTA+TGG | 0.233933 | 7_1:-22822754 | Msa1014320:CDS |
| CTTTAAACTATGGCGAATTC+TGG | 0.250204 | 7_1:-22825499 | Msa1014320:CDS |
| TCTTCTTTAAAACTTGTAAA+AGG | 0.252332 | 7_1:+22823594 | None:intergenic |
| ACAAATCTCTTTATCCATTC+AGG | 0.258994 | 7_1:+22823174 | None:intergenic |
| ACAGTTTATTACATTGATTC+AGG | 0.267378 | 7_1:+22822405 | None:intergenic |
| TCTCAAATTGCATTTGCTTT+TGG | 0.270633 | 7_1:+22823805 | None:intergenic |
| GCAGCATTTGCTTTAAACTA+TGG | 0.277299 | 7_1:-22825509 | Msa1014320:CDS |
| TAAGCCGATTCTTGTTGTTT+TGG | 0.280115 | 7_1:-22823685 | Msa1014320:CDS |
| AATATCTGATGATACCATTT+TGG | 0.307627 | 7_1:-22826150 | Msa1014320:CDS |
| TTCAACTGGTTTACAATCAT+TGG | 0.314448 | 7_1:-22822827 | Msa1014320:CDS |
| CTATTCACATGATGTGGATT+TGG | 0.328711 | 7_1:-22823632 | Msa1014320:CDS |
| ACAATAGATATGAACTAGTT+TGG | 0.335329 | 7_1:-22823863 | Msa1014320:CDS |
| AAGATCAATTAATTAGTGTT+AGG | 0.336995 | 7_1:+22822553 | None:intergenic |
| TATTCACATGATGTGGATTT+GGG | 0.340749 | 7_1:-22823631 | Msa1014320:CDS |
| TCATCAGATATTACATTTGC+AGG | 0.343903 | 7_1:+22826161 | None:intergenic |
| AAGGGTCTTGTTGTATAAAC+TGG | 0.349917 | 7_1:-22822380 | Msa1014320:three_prime_UTR |
| CACATCATGTGAATAGCATT+AGG | 0.359069 | 7_1:+22823639 | None:intergenic |
| TCAGAGGTTTGGTCTACAAT+TGG | 0.362962 | 7_1:+22823837 | None:intergenic |
| AAAGCATGATATGGTTCTTC+TGG | 0.370042 | 7_1:-22823008 | Msa1014320:CDS |
| GGTCTGTCCATTCAGAGGTT+TGG | 0.372245 | 7_1:+22823826 | None:intergenic |
| TATACCAGAAAGAATCTTGT+AGG | 0.379009 | 7_1:+22825610 | None:intergenic |
| ATGACTAGCATTGGCAAGTT+AGG | 0.384278 | 7_1:-22826221 | Msa1014320:CDS |
| ATTTGAGTTCTCACATTCAA+TGG | 0.387294 | 7_1:-22822698 | Msa1014320:CDS |
| ACGATGGTGTTTCAAAGAAA+AGG | 0.388410 | 7_1:-22824106 | Msa1014320:CDS |
| CAGAGGTTTGGTCTACAATT+GGG | 0.391763 | 7_1:+22823838 | None:intergenic |
| ATAGACCAGTATGCAGCAAC+TGG | 0.409238 | 7_1:+22825245 | None:intergenic |
| CTCTTTGGAAGGATGAGACT+TGG | 0.410927 | 7_1:-22823569 | Msa1014320:CDS |
| AACAAACAAACAAACATTTA+GGG | 0.411559 | 7_1:+22822437 | None:intergenic |
| CAGCTTTCAAGGAACATTAT+GGG | 0.412419 | 7_1:-22822753 | Msa1014320:CDS |
| TGGTTTCGAAACAGCTTTCA+AGG | 0.415474 | 7_1:-22822764 | Msa1014320:CDS |
| TTTGGTTCATACAGAGTGAA+TGG | 0.416366 | 7_1:-22823719 | Msa1014320:CDS |
| AAGTGTAAATGAAGAACTAT+AGG | 0.419439 | 7_1:+22826263 | None:intergenic |
| TGATCTAGTAAATGTCATAT+TGG | 0.421018 | 7_1:-22825360 | Msa1014320:CDS |
| GGTTGGATTGTTCTAGCAAA+AGG | 0.423246 | 7_1:-22822877 | Msa1014320:CDS |
| GTTGAACTCAATGACACATT+TGG | 0.424252 | 7_1:+22825331 | None:intergenic |
| GAAATGGATACCGAAGCTTA+TGG | 0.426947 | 7_1:-22824221 | Msa1014320:CDS |
| CAAATCTCTTTATCCATTCA+GGG | 0.428121 | 7_1:+22823175 | None:intergenic |
| TTGACTCGGAAATATTGAAC+TGG | 0.428475 | 7_1:-22823521 | Msa1014320:CDS |
| CGATGGTGTTTCAAAGAAAA+GGG | 0.429895 | 7_1:-22824105 | Msa1014320:intron |
| GGATCATCTCAGAAAGCAAC+TGG | 0.431497 | 7_1:-22824625 | Msa1014320:CDS |
| TAAGCAGTTACCTGGTATCA+TGG | 0.439496 | 7_1:-22825423 | Msa1014320:CDS |
| ACATCATGTGAATAGCATTA+GGG | 0.449066 | 7_1:+22823640 | None:intergenic |
| TGATAAGCAAGGCAGTTGTT+TGG | 0.450189 | 7_1:-22823737 | Msa1014320:CDS |
| AAGCTCCCAAGCATCATTAG+AGG | 0.450821 | 7_1:+22824680 | None:intergenic |
| CTTCACCTCTAATGATGCTT+GGG | 0.452359 | 7_1:-22824685 | Msa1014320:CDS |
| TGTCATCGACTTGTTTCAGT+TGG | 0.453249 | 7_1:+22822953 | None:intergenic |
| ATTGAATGCAGAGAAAGAAA+TGG | 0.455102 | 7_1:-22824237 | Msa1014320:intron |
| ATCAATTAATTAGTGTTAGG+AGG | 0.459512 | 7_1:+22822556 | None:intergenic |
| GTCAATGGACATGCTTCAAC+TGG | 0.459520 | 7_1:-22822841 | Msa1014320:CDS |
| GGTCAGAACAAAGCATGATA+TGG | 0.459683 | 7_1:-22823017 | Msa1014320:CDS |
| TTTCAAGCTTAGAAGTATAG+TGG | 0.462798 | 7_1:-22824646 | Msa1014320:CDS |
| ATGATTTGAGACAGTGTTGT+AGG | 0.469733 | 7_1:+22825271 | None:intergenic |
| TTTGAAACACCATCGTATAG+AGG | 0.473195 | 7_1:+22824113 | None:intergenic |
| TCGGGGCACGTGAGTCGATC+AGG | 0.474156 | 7_1:+22822667 | None:intergenic |
| TCTTCACCTCTAATGATGCT+TGG | 0.475443 | 7_1:-22824686 | Msa1014320:CDS |
| TCCAACATGCTTGTGTAGGC+AGG | 0.476904 | 7_1:+22825752 | None:intergenic |
| TTGGTTACAATGACTAGCAT+TGG | 0.484127 | 7_1:-22826230 | Msa1014320:exon |
| ATGCATATTCCGACGACACT+CGG | 0.487421 | 7_1:+22822648 | None:intergenic |
| GGGTCACAAATTGTGGTCAA+TGG | 0.488045 | 7_1:-22822856 | Msa1014320:CDS |
| ATATCCCAGTTGCTGCATAC+TGG | 0.495294 | 7_1:-22825250 | Msa1014320:CDS |
| GGATTGAGACAGAGAAGAGA+TGG | 0.498952 | 7_1:+22826284 | None:intergenic |
| TGCATATTCCGACGACACTC+GGG | 0.499131 | 7_1:+22822649 | None:intergenic |
| GGATCCAAAACAACAAGAAT+CGG | 0.499962 | 7_1:+22823681 | None:intergenic |
| CCTTGTCTGTTAAGATTGAT+CGG | 0.504469 | 7_1:-22825727 | Msa1014320:CDS |
| TAAAGAAGAAACTCTTTGGA+AGG | 0.506286 | 7_1:-22823580 | Msa1014320:CDS |
| TTTGAGTTCTCACATTCAAT+GGG | 0.506462 | 7_1:-22822697 | Msa1014320:CDS |
| CTACAAGTGGGATGTTAAGT+TGG | 0.509788 | 7_1:-22825543 | Msa1014320:CDS |
| CTGATTCGACAGATTAAGGA+AGG | 0.511043 | 7_1:-22823228 | Msa1014320:intron |
| TGCTTGGGAGCTTTCAACAT+TGG | 0.511362 | 7_1:-22824670 | Msa1014320:CDS |
| CTCAAATATTGCGACTGTTG+TGG | 0.512636 | 7_1:+22825577 | None:intergenic |
| AGTTTATACAACAAGACCCT+TGG | 0.512791 | 7_1:+22822382 | None:intergenic |
| TCAATGTAATAAACTGTCCA+AGG | 0.516537 | 7_1:-22822399 | Msa1014320:three_prime_UTR |
| GTTTAAAGCAAATGCTGCTA+AGG | 0.517521 | 7_1:+22825514 | None:intergenic |
| CCGTAGCAATCCATAAGCTT+CGG | 0.518755 | 7_1:+22824211 | None:intergenic |
| GTCTTCAAGTTGATCAACAC+TGG | 0.519808 | 7_1:+22825787 | None:intergenic |
| GACAGAGAAGAGATGGTGAT+TGG | 0.523523 | 7_1:+22826291 | None:intergenic |
| TGCCTACACAAGCATGTTGG+AGG | 0.524812 | 7_1:-22825750 | Msa1014320:CDS |
| CCTCTTCAACATTATCATCA+TGG | 0.524927 | 7_1:+22822602 | None:intergenic |
| TCATATCTATTGTCTTGTCT+CGG | 0.526932 | 7_1:+22823873 | None:intergenic |
| AGCAAAAGGGTCACAAATTG+TGG | 0.526965 | 7_1:-22822863 | Msa1014320:CDS |
| TCTTCCTTCTCAGTGCCTCA+AGG | 0.527809 | 7_1:+22823985 | None:intergenic |
| AAAATCTCTTTACTCACAGC+TGG | 0.529976 | 7_1:-22823038 | Msa1014320:CDS |
| ACATCATAATCAAGTCCCTC+AGG | 0.531841 | 7_1:+22826101 | None:intergenic |
| GCTACGACAAACAAGGCGGT+TGG | 0.534775 | 7_1:-22822894 | Msa1014320:CDS |
| ACTGCCTTGCTTATCAATGA+AGG | 0.536170 | 7_1:+22823744 | None:intergenic |
| AGTTCTCACATTCAATGGGA+AGG | 0.538806 | 7_1:-22822693 | Msa1014320:CDS |
| GCTCGTCGGTTGAGAACTCT+AGG | 0.540108 | 7_1:+22823940 | None:intergenic |
| TTGTAGACCAAACCTCTGAA+TGG | 0.546108 | 7_1:-22823833 | Msa1014320:CDS |
| GATTGATCGGATTTCTTGTG+AGG | 0.546451 | 7_1:-22825714 | Msa1014320:intron |
| CCGAAGCTTATGGATTGCTA+CGG | 0.546772 | 7_1:-22824211 | Msa1014320:CDS |
| ACGGAGGAGACGACCCTGAA+TGG | 0.549939 | 7_1:-22823188 | Msa1014320:CDS |
| GTTGGATTGTTCTAGCAAAA+GGG | 0.555014 | 7_1:-22822876 | Msa1014320:CDS |
| TCTCGTGTAATGTATTGAGT+TGG | 0.558627 | 7_1:+22825302 | None:intergenic |
| AAGCAAATGCTGCTAAGGCT+AGG | 0.558808 | 7_1:+22825519 | None:intergenic |
| AAAGATCATGCTGAACGAGT+TGG | 0.562674 | 7_1:-22822784 | Msa1014320:CDS |
| TCACGTGCCCCGAGTGTCGT+CGG | 0.563863 | 7_1:-22822657 | Msa1014320:CDS |
| GGCTTTGATTTATTCACATG+AGG | 0.565489 | 7_1:-22824144 | Msa1014320:CDS |
| ATCTTCATGTTGTCAGTGTG+TGG | 0.573092 | 7_1:+22824173 | None:intergenic |
| GCTTGTCGATGGCATTGACT+CGG | 0.574483 | 7_1:-22823535 | Msa1014320:CDS |
| GCGATTCTTAAGCAGTTACC+TGG | 0.577353 | 7_1:-22825431 | Msa1014320:CDS |
| ATTACAAGCCTCACTACACT+TGG | 0.579365 | 7_1:-22825194 | Msa1014320:CDS |
| AGACTTGAATTGCTTGTCGA+TGG | 0.580658 | 7_1:-22823546 | Msa1014320:CDS |
| ATCATGGCAGCACTGAAAAG+TGG | 0.581872 | 7_1:+22822618 | None:intergenic |
| CGAAGCTTATGGATTGCTAC+GGG | 0.582507 | 7_1:-22824210 | Msa1014320:CDS |
| TGAGCCTTGAGGCACTGAGA+AGG | 0.585698 | 7_1:-22823989 | Msa1014320:CDS |
| AGATGCTTACAATCTACAAG+TGG | 0.588400 | 7_1:-22825556 | Msa1014320:CDS |
| TTGTATAAACTGGAGTACAT+TGG | 0.589409 | 7_1:-22822370 | Msa1014320:three_prime_UTR |
| TTCGAGTATTAGAAGCTCGT+CGG | 0.591414 | 7_1:+22823926 | None:intergenic |
| CTGGTCTATTAGAAGTATTG+TGG | 0.591915 | 7_1:-22825231 | Msa1014320:CDS |
| ACAGATCTATAACGAATCAA+AGG | 0.592872 | 7_1:-22823904 | Msa1014320:CDS |
| AGAAGCCCGAAAAGTAGCAC+AGG | 0.593107 | 7_1:-22823148 | Msa1014320:CDS |
| CCGATCAATCTTAACAGACA+AGG | 0.596956 | 7_1:+22825727 | None:intergenic |
| CTTCTTAGCTACGACAAACA+AGG | 0.597780 | 7_1:-22822901 | Msa1014320:CDS |
| GGGCTATGCAATAAACTGCA+TGG | 0.599388 | 7_1:+22822457 | None:intergenic |
| CCATGATGATAATGTTGAAG+AGG | 0.600515 | 7_1:-22822602 | Msa1014320:CDS |
| TCTTCAACGATATGTAGAAG+TGG | 0.605315 | 7_1:+22826074 | None:intergenic |
| GACACGTACACCGCTAGAGA+TGG | 0.608051 | 7_1:-22823124 | Msa1014320:CDS |
| ACATGCTTGTGTAGGCAGGA+AGG | 0.608112 | 7_1:+22825756 | None:intergenic |
| TCCTGCCTACACAAGCATGT+TGG | 0.608700 | 7_1:-22825753 | Msa1014320:CDS |
| AAACCAACTTGCAAAATCGA+TGG | 0.611326 | 7_1:-22825453 | Msa1014320:CDS |
| GTTGCAGATCATAATCCTGA+GGG | 0.611999 | 7_1:-22826116 | Msa1014320:CDS |
| AATCATGTTCAGAACTGCTG+AGG | 0.612635 | 7_1:+22826033 | None:intergenic |
| CTAATGCTATTCACATGATG+TGG | 0.614448 | 7_1:-22823638 | Msa1014320:CDS |
| TCATCCTTCATTGATAAGCA+AGG | 0.620107 | 7_1:-22823748 | Msa1014320:CDS |
| CAGTTCTGAACATGATTCAA+CGG | 0.622032 | 7_1:-22826027 | Msa1014320:intron |
| AGAACTCAAATCTACAACAA+GGG | 0.635472 | 7_1:+22822710 | None:intergenic |
| TAGACCAGTATGCAGCAACT+GGG | 0.636843 | 7_1:+22825246 | None:intergenic |
| CAATGTAATAAACTGTCCAA+GGG | 0.639320 | 7_1:-22822398 | Msa1014320:three_prime_UTR |
| TGACAACATGAAGATCATCA+AGG | 0.643335 | 7_1:-22824165 | Msa1014320:CDS |
| GATATCTGCAAAATACACAT+TGG | 0.645540 | 7_1:-22824603 | Msa1014320:intron |
| TGACTCGGAAATATTGAACT+GGG | 0.646970 | 7_1:-22823520 | Msa1014320:intron |
| ATCATGTTCAGAACTGCTGA+GGG | 0.648501 | 7_1:+22826034 | None:intergenic |
| GGCCTCCAACATGCTTGTGT+AGG | 0.655722 | 7_1:+22825748 | None:intergenic |
| GGGCAAGCAACCCTCCCTTG+AGG | 0.656666 | 7_1:+22823660 | None:intergenic |
| ATGCAACAACTGATGAAAGG+TGG | 0.657551 | 7_1:-22826194 | Msa1014320:CDS |
| AGTTGCAGATCATAATCCTG+AGG | 0.658892 | 7_1:-22826117 | Msa1014320:CDS |
| GATGCTTACAATCTACAAGT+GGG | 0.660888 | 7_1:-22825555 | Msa1014320:CDS |
| GAGAACTCAAATCTACAACA+AGG | 0.667294 | 7_1:+22822709 | None:intergenic |
| ATCTGAGAGAAAGTATGCCG+TGG | 0.669026 | 7_1:-22823782 | Msa1014320:CDS |
| TGGTTGAGTATGATCTCATG+TGG | 0.669554 | 7_1:-22822807 | Msa1014320:CDS |
| TCATTAAGCGTATCAAATCG+TGG | 0.673115 | 7_1:+22825380 | None:intergenic |
| ACTCATAACCAAGTGTAGTG+AGG | 0.676352 | 7_1:+22825186 | None:intergenic |
| CCTACGTATACCATCTCTAG+CGG | 0.681871 | 7_1:+22823114 | None:intergenic |
| GCTATGCAACAACTGATGAA+AGG | 0.685640 | 7_1:-22826197 | Msa1014320:CDS |
| GGATGATACACCGAAAACCA+CGG | 0.687314 | 7_1:+22823765 | None:intergenic |
| CCGCTAGAGATGGTATACGT+AGG | 0.695174 | 7_1:-22823114 | Msa1014320:CDS |
| AAACAAACAGGTGAGCCTTG+AGG | 0.711245 | 7_1:-22824000 | Msa1014320:intron |
| ATTCACATGATGTGGATTTG+GGG | 0.712683 | 7_1:-22823630 | Msa1014320:CDS |
| CTTAGCTACGACAAACAAGG+CGG | 0.730750 | 7_1:-22822898 | Msa1014320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAATATAATATTTAAG+TGG | + | chr7_1:22824054-22824073 | None:intergenic | 10.0% |
| !! | ACTTAAATATTATATTTAGA+TGG | - | chr7_1:22824053-22824072 | Msa1014320:intron | 10.0% |
| !! | ACAATATTAATTAGTATAAT+CGG | + | chr7_1:22824595-22824614 | None:intergenic | 10.0% |
| !! | TAAGTATTTAGAAATGTTAT+TGG | + | chr7_1:22824563-22824582 | None:intergenic | 15.0% |
| !!! | TTGTTGTTTTTTTTTTTTGA+AGG | - | chr7_1:22826097-22826116 | Msa1014320:CDS | 15.0% |
| !! | TATAACGAACAATATTTACT+TGG | + | chr7_1:22822665-22822684 | None:intergenic | 20.0% |
| !!! | TATAATGTATTGTTTCTTTC+AGG | - | chr7_1:22822808-22822827 | Msa1014320:CDS | 20.0% |
| !!! | ATAATGTATTGTTTCTTTCA+GGG | - | chr7_1:22822809-22822828 | Msa1014320:CDS | 20.0% |
| !! | AATTACCTAAACAATATTCT+CGG | - | chr7_1:22822945-22822964 | Msa1014320:CDS | 20.0% |
| !!! | CACACAAAAATATTTTTTGT+AGG | - | chr7_1:22824093-22824112 | Msa1014320:intron | 20.0% |
| !!! | TCTTCTTTAAAACTTGTAAA+AGG | + | chr7_1:22825036-22825055 | None:intergenic | 20.0% |
| !! | CAGAAAAATAAATACGTAAT+AGG | + | chr7_1:22825382-22825401 | None:intergenic | 20.0% |
| !! | AAGATCAATTAATTAGTGTT+AGG | + | chr7_1:22826077-22826096 | None:intergenic | 20.0% |
| !!! | GTTGTTTGTTTTCATTATTT+TGG | - | chr7_1:22826130-22826149 | Msa1014320:CDS | 20.0% |
| !!! | TATTTTGGTTTTGTTGATTA+TGG | - | chr7_1:22826145-22826164 | Msa1014320:CDS | 20.0% |
| !! | AACAAACAAACAAACATTTA+GGG | + | chr7_1:22826193-22826212 | None:intergenic | 20.0% |
| !! | AAACAAACAAACAAACATTT+AGG | + | chr7_1:22826194-22826213 | None:intergenic | 20.0% |
| ! | AAGTGTAAATGAAGAACTAT+AGG | + | chr7_1:22822367-22822386 | None:intergenic | 25.0% |
| !!! | TTTACACTTTTCTTTTTCGT+TGG | - | chr7_1:22822378-22822397 | Msa1014320:three_prime_UTR | 25.0% |
| !! | AATATCTGATGATACCATTT+TGG | - | chr7_1:22822477-22822496 | Msa1014320:three_prime_UTR | 25.0% |
| !! | AACTATTTTCTTCACCAAAA+TGG | + | chr7_1:22822494-22822513 | None:intergenic | 25.0% |
| ! | TTCGATTCTCAAAATTGTAA+CGG | - | chr7_1:22822703-22822722 | Msa1014320:CDS | 25.0% |
| ! | TGATCTAGTAAATGTCATAT+TGG | - | chr7_1:22823267-22823286 | Msa1014320:intron | 25.0% |
| ! | TATTAGCTAATAGTCAATCT+TGG | - | chr7_1:22824267-22824286 | Msa1014320:intron | 25.0% |
| ! | TTCAATGACCATCTTAAATT+AGG | + | chr7_1:22824376-22824395 | None:intergenic | 25.0% |
| ! | TATGATTAATGCAAACAAAC+AGG | - | chr7_1:22824615-22824634 | Msa1014320:CDS | 25.0% |
| !!! | AATGTGTTACTTCTATTTTC+AGG | - | chr7_1:22824664-22824683 | Msa1014320:CDS | 25.0% |
| ! | ACAATAGATATGAACTAGTT+TGG | - | chr7_1:22824764-22824783 | Msa1014320:intron | 25.0% |
| !!! | GTTTTAAAGAAGAAACTCTT+TGG | - | chr7_1:22825043-22825062 | Msa1014320:intron | 25.0% |
| ! | TACGTAATAGGAAAATAGAT+TGG | + | chr7_1:22825370-22825389 | None:intergenic | 25.0% |
| ! | ATCAATTAATTAGTGTTAGG+AGG | + | chr7_1:22826074-22826093 | None:intergenic | 25.0% |
| !!! | ACAGTTTATTACATTGATTC+AGG | + | chr7_1:22826225-22826244 | None:intergenic | 25.0% |
| TCATCAGATATTACATTTGC+AGG | + | chr7_1:22822469-22822488 | None:intergenic | 30.0% | |
| ATTCAACGGTATGATTCTAA+CGG | - | chr7_1:22822614-22822633 | Msa1014320:CDS | 30.0% | |
| ! | AAGAGTATATCAGAAATTCG+AGG | + | chr7_1:22822743-22822762 | None:intergenic | 30.0% |
| TCAAACCGAGAATATTGTTT+AGG | + | chr7_1:22822953-22822972 | None:intergenic | 30.0% | |
| ATTTCCTACAAGATTCTTTC+TGG | - | chr7_1:22823013-22823032 | Msa1014320:CDS | 30.0% | |
| TATACCAGAAAGAATCTTGT+AGG | + | chr7_1:22823020-22823039 | None:intergenic | 30.0% | |
| TAAAGATCTCGATAAATGAC+AGG | + | chr7_1:22823475-22823494 | None:intergenic | 30.0% | |
| TTGAAGTAGTTGCTCAAAAA+CGG | + | chr7_1:22823657-22823676 | None:intergenic | 30.0% | |
| ! | TTTCAAGCTTAGAAGTATAG+TGG | - | chr7_1:22823981-22824000 | Msa1014320:CDS | 30.0% |
| GATATCTGCAAAATACACAT+TGG | - | chr7_1:22824024-22824043 | Msa1014320:intron | 30.0% | |
| TAGATTGATATATGCATGGA+TGG | + | chr7_1:22824310-22824329 | None:intergenic | 30.0% | |
| CAGATAGATTGATATATGCA+TGG | + | chr7_1:22824314-22824333 | None:intergenic | 30.0% | |
| CATGCATATATCAATCTATC+TGG | - | chr7_1:22824312-22824331 | Msa1014320:intron | 30.0% | |
| !! | TCTATCTGGTTTGATTCTTT+TGG | - | chr7_1:22824326-22824345 | Msa1014320:intron | 30.0% |
| ATTGAATGCAGAGAAAGAAA+TGG | - | chr7_1:22824390-22824409 | Msa1014320:intron | 30.0% | |
| ACAGATCTATAACGAATCAA+AGG | - | chr7_1:22824723-22824742 | Msa1014320:intron | 30.0% | |
| TCATATCTATTGTCTTGTCT+CGG | + | chr7_1:22824757-22824776 | None:intergenic | 30.0% | |
| ! | TCTCAAATTGCATTTGCTTT+TGG | + | chr7_1:22824825-22824844 | None:intergenic | 30.0% |
| ACATCATGTGAATAGCATTA+GGG | + | chr7_1:22824990-22825009 | None:intergenic | 30.0% | |
| TATTCACATGATGTGGATTT+GGG | - | chr7_1:22824996-22825015 | Msa1014320:intron | 30.0% | |
| TAAAGAAGAAACTCTTTGGA+AGG | - | chr7_1:22825047-22825066 | Msa1014320:intron | 30.0% | |
| TAGCATGAATGTACGAAAAA+GGG | + | chr7_1:22825171-22825190 | None:intergenic | 30.0% | |
| AACAGTACTAAACACAACTT+CGG | - | chr7_1:22825306-22825325 | Msa1014320:CDS | 30.0% | |
| !! | TTTTCTGATTCGACAGATTA+AGG | - | chr7_1:22825395-22825414 | Msa1014320:CDS | 30.0% |
| !! | GGAAAGTACATTTTCTTGTA+CGG | - | chr7_1:22825420-22825439 | Msa1014320:CDS | 30.0% |
| CAAATCTCTTTATCCATTCA+GGG | + | chr7_1:22825455-22825474 | None:intergenic | 30.0% | |
| ACAAATCTCTTTATCCATTC+AGG | + | chr7_1:22825456-22825475 | None:intergenic | 30.0% | |
| !!! | TTTTGATTTCTTGCATCACA+AGG | + | chr7_1:22825704-22825723 | None:intergenic | 30.0% |
| ! | TTCAACTGGTTTACAATCAT+TGG | - | chr7_1:22825800-22825819 | Msa1014320:CDS | 30.0% |
| AGAACTCAAATCTACAACAA+GGG | + | chr7_1:22825920-22825939 | None:intergenic | 30.0% | |
| ! | ATTTGAGTTCTCACATTCAA+TGG | - | chr7_1:22825929-22825948 | Msa1014320:intron | 30.0% |
| ! | TTTGAGTTCTCACATTCAAT+GGG | - | chr7_1:22825930-22825949 | Msa1014320:intron | 30.0% |
| TCAATGTAATAAACTGTCCA+AGG | - | chr7_1:22826228-22826247 | Msa1014320:exon | 30.0% | |
| CAATGTAATAAACTGTCCAA+GGG | - | chr7_1:22826229-22826248 | Msa1014320:exon | 30.0% | |
| TTGTATAAACTGGAGTACAT+TGG | - | chr7_1:22826257-22826276 | Msa1014320:five_prime_UTR | 30.0% | |
| TTGGTTACAATGACTAGCAT+TGG | - | chr7_1:22822397-22822416 | Msa1014320:three_prime_UTR | 35.0% | |
| TCTTCAACGATATGTAGAAG+TGG | + | chr7_1:22822556-22822575 | None:intergenic | 35.0% | |
| !! | CAGTTCTGAACATGATTCAA+CGG | - | chr7_1:22822600-22822619 | Msa1014320:CDS | 35.0% |
| CCTTGTCTGTTAAGATTGAT+CGG | - | chr7_1:22822900-22822919 | Msa1014320:CDS | 35.0% | |
| AGATGCTTACAATCTACAAG+TGG | - | chr7_1:22823071-22823090 | Msa1014320:CDS | 35.0% | |
| GATGCTTACAATCTACAAGT+GGG | - | chr7_1:22823072-22823091 | Msa1014320:CDS | 35.0% | |
| ! | GTTTAAAGCAAATGCTGCTA+AGG | + | chr7_1:22823116-22823135 | None:intergenic | 35.0% |
| ! | GCAGCATTTGCTTTAAACTA+TGG | - | chr7_1:22823118-22823137 | Msa1014320:CDS | 35.0% |
| CTTTAAACTATGGCGAATTC+TGG | - | chr7_1:22823128-22823147 | Msa1014320:CDS | 35.0% | |
| AAACCAACTTGCAAAATCGA+TGG | - | chr7_1:22823174-22823193 | Msa1014320:CDS | 35.0% | |
| TCATTAAGCGTATCAAATCG+TGG | + | chr7_1:22823250-22823269 | None:intergenic | 35.0% | |
| GTTGAACTCAATGACACATT+TGG | + | chr7_1:22823299-22823318 | None:intergenic | 35.0% | |
| TCTCGTGTAATGTATTGAGT+TGG | + | chr7_1:22823328-22823347 | None:intergenic | 35.0% | |
| ! | ATGATTTGAGACAGTGTTGT+AGG | + | chr7_1:22823359-22823378 | None:intergenic | 35.0% |
| !! | CTGGTCTATTAGAAGTATTG+TGG | - | chr7_1:22823396-22823415 | Msa1014320:intron | 35.0% |
| !! | CTTTAGACTAAAGCACTGTT+TGG | - | chr7_1:22823510-22823529 | Msa1014320:intron | 35.0% |
| AGATGTCTGCTATAAGCTAA+CGG | + | chr7_1:22823546-22823565 | None:intergenic | 35.0% | |
| ACCAAACAGAGACTAAAAGA+AGG | - | chr7_1:22823831-22823850 | Msa1014320:CDS | 35.0% | |
| CCAAACAGAGACTAAAAGAA+GGG | - | chr7_1:22823832-22823851 | Msa1014320:CDS | 35.0% | |
| ! | AACTATGCTATTTAGCAGCT+AGG | + | chr7_1:22823877-22823896 | None:intergenic | 35.0% |
| GATATATGCATGGATGGATA+TGG | + | chr7_1:22824304-22824323 | None:intergenic | 35.0% | |
| TATGATGTGCATCTAAGCAT+TGG | - | chr7_1:22824350-22824369 | Msa1014320:intron | 35.0% | |
| !! | AGCATTGGCCTAATTTAAGA+TGG | - | chr7_1:22824365-22824384 | Msa1014320:intron | 35.0% |
| TGACAACATGAAGATCATCA+AGG | - | chr7_1:22824462-22824481 | Msa1014320:intron | 35.0% | |
| ! | GGCTTTGATTTATTCACATG+AGG | - | chr7_1:22824483-22824502 | Msa1014320:intron | 35.0% |
| ! | GACATTTTACCTCTATACGA+TGG | - | chr7_1:22824505-22824524 | Msa1014320:intron | 35.0% |
| ! | TTTGAAACACCATCGTATAG+AGG | + | chr7_1:22824517-22824536 | None:intergenic | 35.0% |
| ACGATGGTGTTTCAAAGAAA+AGG | - | chr7_1:22824521-22824540 | Msa1014320:intron | 35.0% | |
| CGATGGTGTTTCAAAGAAAA+GGG | - | chr7_1:22824522-22824541 | Msa1014320:intron | 35.0% | |
| TCATCCTTCATTGATAAGCA+AGG | - | chr7_1:22824879-22824898 | Msa1014320:intron | 35.0% | |
| ! | TTTGGTTCATACAGAGTGAA+TGG | - | chr7_1:22824908-22824927 | Msa1014320:intron | 35.0% |
| !!! | TAAGCCGATTCTTGTTGTTT+TGG | - | chr7_1:22824942-22824961 | Msa1014320:intron | 35.0% |
| GGATCCAAAACAACAAGAAT+CGG | + | chr7_1:22824949-22824968 | None:intergenic | 35.0% | |
| !!! | TTGTTGTTTTGGATCCTCAA+GGG | - | chr7_1:22824953-22824972 | Msa1014320:intron | 35.0% |
| CACATCATGTGAATAGCATT+AGG | + | chr7_1:22824991-22825010 | None:intergenic | 35.0% | |
| CTAATGCTATTCACATGATG+TGG | - | chr7_1:22824989-22825008 | Msa1014320:intron | 35.0% | |
| CTATTCACATGATGTGGATT+TGG | - | chr7_1:22824995-22825014 | Msa1014320:intron | 35.0% | |
| ATTCACATGATGTGGATTTG+GGG | - | chr7_1:22824997-22825016 | Msa1014320:intron | 35.0% | |
| !! | TTGACTCGGAAATATTGAAC+TGG | - | chr7_1:22825106-22825125 | Msa1014320:intron | 35.0% |
| ! | TGACTCGGAAATATTGAACT+GGG | - | chr7_1:22825107-22825126 | Msa1014320:intron | 35.0% |
| GTAGCATGAATGTACGAAAA+AGG | + | chr7_1:22825172-22825191 | None:intergenic | 35.0% | |
| TAAACACAACTTCGGAACAT+GGG | - | chr7_1:22825314-22825333 | Msa1014320:CDS | 35.0% | |
| ! | AAGTACATTTTCTTGTACGG+AGG | - | chr7_1:22825423-22825442 | Msa1014320:CDS | 35.0% |
| ! | TGTGAGTAAAGAGATTTTCG+CGG | + | chr7_1:22825587-22825606 | None:intergenic | 35.0% |
| AAAATCTCTTTACTCACAGC+TGG | - | chr7_1:22825589-22825608 | Msa1014320:CDS | 35.0% | |
| AAAGCATGATATGGTTCTTC+TGG | - | chr7_1:22825619-22825638 | Msa1014320:intron | 35.0% | |
| !! | GACTTGTTTCAGTTGGATTT+TGG | + | chr7_1:22825670-22825689 | None:intergenic | 35.0% |
| GTTGGATTGTTCTAGCAAAA+GGG | - | chr7_1:22825751-22825770 | Msa1014320:CDS | 35.0% | |
| ACAGCTTTCAAGGAACATTA+TGG | - | chr7_1:22825873-22825892 | Msa1014320:intron | 35.0% | |
| CAGCTTTCAAGGAACATTAT+GGG | - | chr7_1:22825874-22825893 | Msa1014320:intron | 35.0% | |
| GAGAACTCAAATCTACAACA+AGG | + | chr7_1:22825921-22825940 | None:intergenic | 35.0% | |
| CCTCTTCAACATTATCATCA+TGG | + | chr7_1:22826028-22826047 | None:intergenic | 35.0% | |
| ! | CCATGATGATAATGTTGAAG+AGG | - | chr7_1:22826025-22826044 | Msa1014320:intron | 35.0% |
| AGTTTATACAACAAGACCCT+TGG | + | chr7_1:22826248-22826267 | None:intergenic | 35.0% | |
| !! | AAGGGTCTTGTTGTATAAAC+TGG | - | chr7_1:22826247-22826266 | Msa1014320:five_prime_UTR | 35.0% |
| !! | ATGACTAGCATTGGCAAGTT+AGG | - | chr7_1:22822406-22822425 | Msa1014320:three_prime_UTR | 40.0% |
| GCTATGCAACAACTGATGAA+AGG | - | chr7_1:22822430-22822449 | Msa1014320:three_prime_UTR | 40.0% | |
| ATGCAACAACTGATGAAAGG+TGG | - | chr7_1:22822433-22822452 | Msa1014320:three_prime_UTR | 40.0% | |
| AGTTGCAGATCATAATCCTG+AGG | - | chr7_1:22822510-22822529 | Msa1014320:three_prime_UTR | 40.0% | |
| GTTGCAGATCATAATCCTGA+GGG | - | chr7_1:22822511-22822530 | Msa1014320:three_prime_UTR | 40.0% | |
| ACATCATAATCAAGTCCCTC+AGG | + | chr7_1:22822529-22822548 | None:intergenic | 40.0% | |
| ATCATGTTCAGAACTGCTGA+GGG | + | chr7_1:22822596-22822615 | None:intergenic | 40.0% | |
| AATCATGTTCAGAACTGCTG+AGG | + | chr7_1:22822597-22822616 | None:intergenic | 40.0% | |
| TCAGAAATTCGAGGACTAGA+CGG | + | chr7_1:22822734-22822753 | None:intergenic | 40.0% | |
| !! | GTCTTCAAGTTGATCAACAC+TGG | + | chr7_1:22822843-22822862 | None:intergenic | 40.0% |
| CCGATCAATCTTAACAGACA+AGG | + | chr7_1:22822903-22822922 | None:intergenic | 40.0% | |
| GATTGATCGGATTTCTTGTG+AGG | - | chr7_1:22822913-22822932 | Msa1014320:CDS | 40.0% | |
| CTCAAATATTGCGACTGTTG+TGG | + | chr7_1:22823053-22823072 | None:intergenic | 40.0% | |
| CTACAAGTGGGATGTTAAGT+TGG | - | chr7_1:22823084-22823103 | Msa1014320:CDS | 40.0% | |
| TAAGCAGTTACCTGGTATCA+TGG | - | chr7_1:22823204-22823223 | Msa1014320:CDS | 40.0% | |
| ATTACAAGCCTCACTACACT+TGG | - | chr7_1:22823433-22823452 | Msa1014320:intron | 40.0% | |
| ACTCATAACCAAGTGTAGTG+AGG | + | chr7_1:22823444-22823463 | None:intergenic | 40.0% | |
| GCTGTCAGTTATAAGTTCGT+CGG | - | chr7_1:22823792-22823811 | Msa1014320:CDS | 40.0% | |
| ! | CCCTTCTTTTAGTCTCTGTT+TGG | + | chr7_1:22823835-22823854 | None:intergenic | 40.0% |
| TCTTCACCTCTAATGATGCT+TGG | - | chr7_1:22823941-22823960 | Msa1014320:CDS | 40.0% | |
| CTTCACCTCTAATGATGCTT+GGG | - | chr7_1:22823942-22823961 | Msa1014320:CDS | 40.0% | |
| TCTCAAACAACGACAATGTC+AGG | - | chr7_1:22824183-22824202 | Msa1014320:CDS | 40.0% | |
| AACAAACCGCTATACATCGA+TGG | - | chr7_1:22824235-22824254 | Msa1014320:intron | 40.0% | |
| TGTTGACCATCGATGTATAG+CGG | + | chr7_1:22824244-22824263 | None:intergenic | 40.0% | |
| GAAATGGATACCGAAGCTTA+TGG | - | chr7_1:22824406-22824425 | Msa1014320:intron | 40.0% | |
| ATCTTCATGTTGTCAGTGTG+TGG | + | chr7_1:22824457-22824476 | None:intergenic | 40.0% | |
| TTCGAGTATTAGAAGCTCGT+CGG | + | chr7_1:22824704-22824723 | None:intergenic | 40.0% | |
| ! | CAGAGGTTTGGTCTACAATT+GGG | + | chr7_1:22824792-22824811 | None:intergenic | 40.0% |
| ! | TCAGAGGTTTGGTCTACAAT+TGG | + | chr7_1:22824793-22824812 | None:intergenic | 40.0% |
| TTGTAGACCAAACCTCTGAA+TGG | - | chr7_1:22824794-22824813 | Msa1014320:intron | 40.0% | |
| !! | AGAAAGTATGCCGTGGTTTT+CGG | - | chr7_1:22824852-22824871 | Msa1014320:intron | 40.0% |
| ACTGCCTTGCTTATCAATGA+AGG | + | chr7_1:22824886-22824905 | None:intergenic | 40.0% | |
| TGATAAGCAAGGCAGTTGTT+TGG | - | chr7_1:22824890-22824909 | Msa1014320:intron | 40.0% | |
| !!! | CTTGTTGTTTTGGATCCTCA+AGG | - | chr7_1:22824952-22824971 | Msa1014320:intron | 40.0% |
| AGACTTGAATTGCTTGTCGA+TGG | - | chr7_1:22825081-22825100 | Msa1014320:intron | 40.0% | |
| ! | GAATGCAGCAATGTGGTTTT+GGG | + | chr7_1:22825212-22825231 | None:intergenic | 40.0% |
| ! | TGAATGCAGCAATGTGGTTT+TGG | + | chr7_1:22825213-22825232 | None:intergenic | 40.0% |
| AACCACATTGCTGCATTCAT+TGG | - | chr7_1:22825214-22825233 | Msa1014320:CDS | 40.0% | |
| CATTGGAGGAATGAATGCTA+TGG | - | chr7_1:22825231-22825250 | Msa1014320:CDS | 40.0% | |
| CTAAACACAACTTCGGAACA+TGG | - | chr7_1:22825313-22825332 | Msa1014320:CDS | 40.0% | |
| ! | CTGATTCGACAGATTAAGGA+AGG | - | chr7_1:22825399-22825418 | Msa1014320:CDS | 40.0% |
| GGTCAGAACAAAGCATGATA+TGG | - | chr7_1:22825610-22825629 | Msa1014320:CDS | 40.0% | |
| !! | TTTTGGAGAAGAGCATGCTT+TGG | + | chr7_1:22825653-22825672 | None:intergenic | 40.0% |
| !! | TGTCATCGACTTGTTTCAGT+TGG | + | chr7_1:22825677-22825696 | None:intergenic | 40.0% |
| CTTCTTAGCTACGACAAACA+AGG | - | chr7_1:22825726-22825745 | Msa1014320:CDS | 40.0% | |
| GGTTGGATTGTTCTAGCAAA+AGG | - | chr7_1:22825750-22825769 | Msa1014320:CDS | 40.0% | |
| AGCAAAAGGGTCACAAATTG+TGG | - | chr7_1:22825764-22825783 | Msa1014320:CDS | 40.0% | |
| TGGTTGAGTATGATCTCATG+TGG | - | chr7_1:22825820-22825839 | Msa1014320:intron | 40.0% | |
| AAAGATCATGCTGAACGAGT+TGG | - | chr7_1:22825843-22825862 | Msa1014320:intron | 40.0% | |
| TGGTTTCGAAACAGCTTTCA+AGG | - | chr7_1:22825863-22825882 | Msa1014320:intron | 40.0% | |
| AGTTCTCACATTCAATGGGA+AGG | - | chr7_1:22825934-22825953 | Msa1014320:intron | 40.0% | |
| GACAGAGAAGAGATGGTGAT+TGG | + | chr7_1:22822339-22822358 | None:intergenic | 45.0% | |
| GGATTGAGACAGAGAAGAGA+TGG | + | chr7_1:22822346-22822365 | None:intergenic | 45.0% | |
| AAGCAAATGCTGCTAAGGCT+AGG | + | chr7_1:22823111-22823130 | None:intergenic | 45.0% | |
| !!! | TCGCCATCGATTTTGCAAGT+TGG | + | chr7_1:22823180-22823199 | None:intergenic | 45.0% |
| GCGATTCTTAAGCAGTTACC+TGG | - | chr7_1:22823196-22823215 | Msa1014320:CDS | 45.0% | |
| ATATCCCAGTTGCTGCATAC+TGG | - | chr7_1:22823377-22823396 | Msa1014320:intron | 45.0% | |
| TAGACCAGTATGCAGCAACT+GGG | + | chr7_1:22823384-22823403 | None:intergenic | 45.0% | |
| ATAGACCAGTATGCAGCAAC+TGG | + | chr7_1:22823385-22823404 | None:intergenic | 45.0% | |
| !! | GACTAAAGCACTGTTTGGCA+AGG | - | chr7_1:22823515-22823534 | Msa1014320:intron | 45.0% |
| AAGCTCCCAAGCATCATTAG+AGG | + | chr7_1:22823950-22823969 | None:intergenic | 45.0% | |
| TGCTTGGGAGCTTTCAACAT+TGG | - | chr7_1:22823957-22823976 | Msa1014320:CDS | 45.0% | |
| GGATCATCTCAGAAAGCAAC+TGG | - | chr7_1:22824002-22824021 | Msa1014320:intron | 45.0% | |
| CCGTAGCAATCCATAAGCTT+CGG | + | chr7_1:22824419-22824438 | None:intergenic | 45.0% | |
| ! | CCGAAGCTTATGGATTGCTA+CGG | - | chr7_1:22824416-22824435 | Msa1014320:intron | 45.0% |
| ! | CGAAGCTTATGGATTGCTAC+GGG | - | chr7_1:22824417-22824436 | Msa1014320:intron | 45.0% |
| AAACAAACAGGTGAGCCTTG+AGG | - | chr7_1:22824627-22824646 | Msa1014320:CDS | 45.0% | |
| ! | CTTTTGGTCTGTCCATTCAG+AGG | + | chr7_1:22824809-22824828 | None:intergenic | 45.0% |
| ! | ATCTGAGAGAAAGTATGCCG+TGG | - | chr7_1:22824845-22824864 | Msa1014320:intron | 45.0% |
| GGATGATACACCGAAAACCA+CGG | + | chr7_1:22824865-22824884 | None:intergenic | 45.0% | |
| !!! | TTGTTTTGGATCCTCAAGGG+AGG | - | chr7_1:22824956-22824975 | Msa1014320:intron | 45.0% |
| !! | TGTTTTGGATCCTCAAGGGA+GGG | - | chr7_1:22824957-22824976 | Msa1014320:intron | 45.0% |
| ! | CTCTTTGGAAGGATGAGACT+TGG | - | chr7_1:22825058-22825077 | Msa1014320:intron | 45.0% |
| CTCCAATGAATGCAGCAATG+TGG | + | chr7_1:22825219-22825238 | None:intergenic | 45.0% | |
| CACATTGCTGCATTCATTGG+AGG | - | chr7_1:22825217-22825236 | Msa1014320:CDS | 45.0% | |
| CCTACGTATACCATCTCTAG+CGG | + | chr7_1:22825516-22825535 | None:intergenic | 45.0% | |
| CTTAGCTACGACAAACAAGG+CGG | - | chr7_1:22825729-22825748 | Msa1014320:CDS | 45.0% | |
| GGGTCACAAATTGTGGTCAA+TGG | - | chr7_1:22825771-22825790 | Msa1014320:CDS | 45.0% | |
| GTCAATGGACATGCTTCAAC+TGG | - | chr7_1:22825786-22825805 | Msa1014320:CDS | 45.0% | |
| ATGCATATTCCGACGACACT+CGG | + | chr7_1:22825982-22826001 | None:intergenic | 45.0% | |
| ! | ATCATGGCAGCACTGAAAAG+TGG | + | chr7_1:22826012-22826031 | None:intergenic | 45.0% |
| GGGCTATGCAATAAACTGCA+TGG | + | chr7_1:22826173-22826192 | None:intergenic | 45.0% | |
| ACATGCTTGTGTAGGCAGGA+AGG | + | chr7_1:22822874-22822893 | None:intergenic | 50.0% | |
| TCCTGCCTACACAAGCATGT+TGG | - | chr7_1:22822874-22822893 | Msa1014320:CDS | 50.0% | |
| TCCAACATGCTTGTGTAGGC+AGG | + | chr7_1:22822878-22822897 | None:intergenic | 50.0% | |
| TGCCTACACAAGCATGTTGG+AGG | - | chr7_1:22822877-22822896 | Msa1014320:CDS | 50.0% | |
| CTCGAATGCTCCATGATACC+AGG | + | chr7_1:22823217-22823236 | None:intergenic | 50.0% | |
| TCTTCCTTCTCAGTGCCTCA+AGG | + | chr7_1:22824645-22824664 | None:intergenic | 50.0% | |
| GGTCTGTCCATTCAGAGGTT+TGG | + | chr7_1:22824804-22824823 | None:intergenic | 50.0% | |
| !! | GCTTGTCGATGGCATTGACT+CGG | - | chr7_1:22825092-22825111 | Msa1014320:intron | 50.0% |
| AGAAGCCCGAAAAGTAGCAC+AGG | - | chr7_1:22825479-22825498 | Msa1014320:CDS | 50.0% | |
| !!! | TGTCGCCTGTGCTACTTTTC+GGG | + | chr7_1:22825487-22825506 | None:intergenic | 50.0% |
| !!! | GTGTCGCCTGTGCTACTTTT+CGG | + | chr7_1:22825488-22825507 | None:intergenic | 50.0% |
| CCGCTAGAGATGGTATACGT+AGG | - | chr7_1:22825513-22825532 | Msa1014320:CDS | 50.0% | |
| TGCATATTCCGACGACACTC+GGG | + | chr7_1:22825981-22826000 | None:intergenic | 50.0% | |
| GGCCTCCAACATGCTTGTGT+AGG | + | chr7_1:22822882-22822901 | None:intergenic | 55.0% | |
| !! | TGAGCCTTGAGGCACTGAGA+AGG | - | chr7_1:22824638-22824657 | Msa1014320:CDS | 55.0% |
| ! | GCTCGTCGGTTGAGAACTCT+AGG | + | chr7_1:22824690-22824709 | None:intergenic | 55.0% |
| GACACGTACACCGCTAGAGA+TGG | - | chr7_1:22825503-22825522 | Msa1014320:CDS | 55.0% | |
| GCTACGACAAACAAGGCGGT+TGG | - | chr7_1:22825733-22825752 | Msa1014320:CDS | 55.0% | |
| GCATATTCCGACGACACTCG+GGG | + | chr7_1:22825980-22825999 | None:intergenic | 55.0% | |
| ACGGAGGAGACGACCCTGAA+TGG | - | chr7_1:22825439-22825458 | Msa1014320:CDS | 60.0% | |
| GGGCAAGCAACCCTCCCTTG+AGG | + | chr7_1:22824970-22824989 | None:intergenic | 65.0% | |
| TCGGGGCACGTGAGTCGATC+AGG | + | chr7_1:22825963-22825982 | None:intergenic | 65.0% | |
| ! | TCACGTGCCCCGAGTGTCGT+CGG | - | chr7_1:22825970-22825989 | Msa1014320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 22822334 | 22826315 | 22822334 | ID=Msa1014320;Name=Msa1014320 |
| chr7_1 | mRNA | 22822334 | 22826315 | 22822334 | ID=Msa1014320-mRNA-1;Parent=Msa1014320;Name=Msa1014320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|1|1|1|1|1|7|227|729 |
| chr7_1 | exon | 22822334 | 22823238 | 22822334 | ID=Msa1014320-mRNA-1:exon:5339;Parent=Msa1014320-mRNA-1 |
| chr7_1 | exon | 22823521 | 22824012 | 22823521 | ID=Msa1014320-mRNA-1:exon:5338;Parent=Msa1014320-mRNA-1 |
| chr7_1 | exon | 22824106 | 22824248 | 22824106 | ID=Msa1014320-mRNA-1:exon:5337;Parent=Msa1014320-mRNA-1 |
| chr7_1 | exon | 22824604 | 22824710 | 22824604 | ID=Msa1014320-mRNA-1:exon:5336;Parent=Msa1014320-mRNA-1 |
| chr7_1 | exon | 22825188 | 22825636 | 22825188 | ID=Msa1014320-mRNA-1:exon:5335;Parent=Msa1014320-mRNA-1 |
| chr7_1 | exon | 22825715 | 22825819 | 22825715 | ID=Msa1014320-mRNA-1:exon:5334;Parent=Msa1014320-mRNA-1 |
| chr7_1 | exon | 22826028 | 22826315 | 22826028 | ID=Msa1014320-mRNA-1:exon:5333;Parent=Msa1014320-mRNA-1 |
| chr7_1 | five_prime_UTR | 22826244 | 22826315 | 22826244 | ID=Msa1014320-mRNA-1:five_prime_utr;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22826028 | 22826243 | 22826028 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22825715 | 22825819 | 22825715 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22825188 | 22825636 | 22825188 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22824604 | 22824710 | 22824604 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22824106 | 22824248 | 22824106 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22823521 | 22824012 | 22823521 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | CDS | 22822561 | 22823238 | 22822561 | ID=Msa1014320-mRNA-1:cds;Parent=Msa1014320-mRNA-1 |
| chr7_1 | three_prime_UTR | 22822334 | 22822560 | 22822334 | ID=Msa1014320-mRNA-1:three_prime_utr;Parent=Msa1014320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
