Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238900 | XP_003594167.1 | 96.296 | 540 | 8 | 1 | 1 | 528 | 1 | 540 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238900 | sp|B3LF48|EHD2_ARATH | 76.360 | 533 | 113 | 2 | 8 | 528 | 14 | 545 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238900 | G7ILR3 | 96.296 | 540 | 8 | 1 | 1 | 528 | 1 | 540 | 0.0 | 1068 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037740 | Msa0238900 | 0.800996 | 1.108638e-48 | -8.615850e-47 |
| Msa0143670 | Msa0238900 | 0.837487 | 5.048586e-57 | -8.615850e-47 |
| Msa0172480 | Msa0238900 | 0.800221 | 1.595505e-48 | -8.615850e-47 |
| Msa0197220 | Msa0238900 | 0.854044 | 1.599532e-61 | -8.615850e-47 |
| Msa0238900 | Msa0580810 | 0.836192 | 1.080686e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238900 | MtrunA17_Chr2g0289411 | 96.296 | 540 | 8 | 1 | 1 | 528 | 1 | 540 | 0.0 | 1068 |
| Msa0238900 | MtrunA17_Chr4g0075521 | 78.652 | 534 | 99 | 2 | 7 | 528 | 12 | 542 | 0.0 | 881 |
| Msa0238900 | MtrunA17_Chr5g0444771 | 76.779 | 534 | 110 | 2 | 7 | 528 | 12 | 543 | 0.0 | 834 |
| Msa0238900 | MtrunA17_Chr3g0099991 | 79.798 | 396 | 77 | 1 | 132 | 527 | 79 | 471 | 0.0 | 672 |
| Msa0238900 | MtrunA17_Chr3g0099991 | 44.531 | 128 | 69 | 1 | 7 | 132 | 15 | 142 | 3.09e-26 | 111 |
| Msa0238900 | MtrunA17_Chr3g0100041 | 73.474 | 426 | 106 | 2 | 105 | 525 | 13 | 436 | 0.0 | 655 |
| Msa0238900 | MtrunA17_Chr3g0144041 | 48.052 | 77 | 40 | 0 | 14 | 90 | 10 | 86 | 1.53e-14 | 77.0 |
| Msa0238900 | MtrunA17_Chr1g0152711 | 41.667 | 84 | 49 | 0 | 7 | 90 | 8 | 91 | 2.37e-14 | 70.5 |
| Msa0238900 | MtrunA17_Chr5g0448681 | 37.097 | 124 | 70 | 2 | 14 | 131 | 14 | 135 | 7.83e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238900 | AT4G05520.1 | 76.360 | 533 | 113 | 2 | 8 | 528 | 14 | 545 | 0.0 | 867 |
| Msa0238900 | AT4G05520.2 | 76.548 | 533 | 111 | 3 | 8 | 528 | 14 | 544 | 0.0 | 864 |
| Msa0238900 | AT3G20290.3 | 75.094 | 534 | 121 | 1 | 7 | 528 | 12 | 545 | 0.0 | 830 |
| Msa0238900 | AT3G20290.1 | 75.094 | 534 | 121 | 1 | 7 | 528 | 12 | 545 | 0.0 | 830 |
| Msa0238900 | AT3G20290.2 | 75.094 | 534 | 121 | 1 | 7 | 528 | 12 | 545 | 0.0 | 830 |
| Msa0238900 | AT1G21630.2 | 39.252 | 107 | 59 | 2 | 14 | 120 | 13 | 113 | 1.31e-15 | 80.9 |
| Msa0238900 | AT1G21630.4 | 39.252 | 107 | 59 | 2 | 14 | 120 | 13 | 113 | 1.45e-15 | 80.9 |
| Msa0238900 | AT1G21630.1 | 39.252 | 107 | 59 | 2 | 14 | 120 | 13 | 113 | 1.53e-15 | 80.5 |
| Msa0238900 | AT1G21630.3 | 39.252 | 107 | 59 | 2 | 14 | 120 | 13 | 113 | 1.60e-15 | 80.5 |
| Msa0238900 | AT1G20760.1 | 37.383 | 107 | 61 | 2 | 14 | 120 | 11 | 111 | 5.61e-13 | 72.4 |
Find 108 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACGATCACAAGCCTTCTT+TGG | 0.217914 | 2_2:+12756980 | None:intergenic |
| TTCAATGGCCTGACAACTTT+TGG | 0.228735 | 2_2:-12757914 | Msa0238900:CDS |
| TGGTTCAATTTAGCAGATTC+AGG | 0.261126 | 2_2:-12762067 | Msa0238900:intron |
| TTCTCAACTCAAGCAGCTTT+GGG | 0.264704 | 2_2:-12761898 | Msa0238900:CDS |
| CTGAATTTCTTCAAAAGCTC+TGG | 0.269036 | 2_2:+12756423 | None:intergenic |
| CGATCTGTTGGCAGATTTGC+TGG | 0.294381 | 2_2:-12757008 | Msa0238900:CDS |
| GTTCTCAACTCAAGCAGCTT+TGG | 0.296386 | 2_2:-12761899 | Msa0238900:CDS |
| ATATCCTAGCATGTCATCTA+TGG | 0.298727 | 2_2:+12756452 | None:intergenic |
| CTTTAAACATTTCAATCATA+TGG | 0.300204 | 2_2:+12756396 | None:intergenic |
| TCTATGGCTTGAATCATCTT+TGG | 0.312040 | 2_2:+12756468 | None:intergenic |
| AGGGGTATCTTCCTTTCTTA+AGG | 0.339968 | 2_2:+12756196 | None:intergenic |
| TGTTTAAGAAATGTAAGATT+TGG | 0.353579 | 2_2:-12756313 | Msa0238900:three_prime_UTR |
| TCAGCAAATCCTTCATTTGT+AGG | 0.356837 | 2_2:+12757067 | None:intergenic |
| AAACCCATGGTCATGCTTCT+TGG | 0.358104 | 2_2:-12758416 | Msa0238900:CDS |
| TTGCAGCTTATGAGAGTCTA+TGG | 0.359591 | 2_2:-12757421 | Msa0238900:intron |
| TCCTGATGAAAGGAGTATTC+CGG | 0.374310 | 2_2:-12757969 | Msa0238900:CDS |
| ATGTATACACGCGCAACTTC+AGG | 0.375254 | 2_2:+12757361 | None:intergenic |
| ATTTCACTGGTGTTGTATCT+TGG | 0.382318 | 2_2:-12757690 | Msa0238900:CDS |
| ACAACAAATCTATCTGTTGT+AGG | 0.392224 | 2_2:+12758190 | None:intergenic |
| GACGATCACAAGCCTTCTTT+GGG | 0.403439 | 2_2:+12756981 | None:intergenic |
| CCTGATGAAAGGAGTATTCC+GGG | 0.405307 | 2_2:-12757968 | Msa0238900:CDS |
| AATGATAAGCCTACAAATGA+AGG | 0.405339 | 2_2:-12757076 | Msa0238900:CDS |
| TACATTTCTTAAACATATGA+TGG | 0.406782 | 2_2:+12756321 | None:intergenic |
| AGTTATTGAAGAGTTGTAGA+TGG | 0.410946 | 2_2:-12756280 | Msa0238900:three_prime_UTR |
| TTGGCTTTGCCCATCATTGT+TGG | 0.414699 | 2_2:+12756789 | None:intergenic |
| AACATTGTGAAAATAGTAAT+GGG | 0.417185 | 2_2:+12756172 | None:intergenic |
| GCAGTTACATCAATAGTTGA+TGG | 0.418875 | 2_2:-12758678 | Msa0238900:CDS |
| GAGAAGAATGACATCACATT+TGG | 0.419446 | 2_2:+12757660 | None:intergenic |
| TTCTAACCATTCACTTCAGA+TGG | 0.420122 | 2_2:+12760835 | None:intergenic |
| TTTGCAGTGAACCATGAGTT+AGG | 0.422813 | 2_2:+12760703 | None:intergenic |
| CCCGGAATACTCCTTTCATC+AGG | 0.428875 | 2_2:+12757968 | None:intergenic |
| TTGGCATCTCCTTCTTAAGA+TGG | 0.431839 | 2_2:+12756808 | None:intergenic |
| CAAGCTTATGTGGATCGAAT+AGG | 0.444146 | 2_2:+12757638 | None:intergenic |
| TTGTGTCCTTTGTTTCTCTC+CGG | 0.449994 | 2_2:+12757723 | None:intergenic |
| AATCTATCTGTTGTAGGCTC+TGG | 0.454663 | 2_2:+12758196 | None:intergenic |
| GAAGGAGATGCCAACAATGA+TGG | 0.458954 | 2_2:-12756799 | Msa0238900:CDS |
| GACACTCCTGGTGTCCTATC+CGG | 0.460325 | 2_2:-12757742 | Msa0238900:CDS |
| TTTCTAGATAACCTTAAGAA+AGG | 0.470932 | 2_2:-12756207 | Msa0238900:three_prime_UTR |
| TGAATTTCTTCAAAAGCTCT+GGG | 0.473582 | 2_2:+12756424 | None:intergenic |
| GGAGCATTGATGTGGTCGTT+AGG | 0.474231 | 2_2:-12757400 | Msa0238900:CDS |
| AAACATTGTGAAAATAGTAA+TGG | 0.475201 | 2_2:+12756171 | None:intergenic |
| TGAGTTCGTTACTGCTATGC+AGG | 0.477502 | 2_2:-12761835 | Msa0238900:intron |
| TTAACAGCTATAGTGTTTCC+CGG | 0.478678 | 2_2:+12757950 | None:intergenic |
| CAAATAAAACTCACTGGATG+TGG | 0.481067 | 2_2:+12757854 | None:intergenic |
| TTCTCTGAAGTGCTCAACAC+TGG | 0.483192 | 2_2:+12756533 | None:intergenic |
| AATGCTGATATGCCTTTCAA+TGG | 0.494165 | 2_2:-12757929 | Msa0238900:CDS |
| AGATAGATTTGTTGTTGTCA+TGG | 0.495429 | 2_2:-12758182 | Msa0238900:intron |
| AAAGAAGGCTTGTGATCGTC+GGG | 0.496833 | 2_2:-12756978 | Msa0238900:intron |
| ATGAACCTCCAAAAGTTGTC+AGG | 0.498414 | 2_2:+12757906 | None:intergenic |
| CATAATTAGCCATCTTAAGA+AGG | 0.498909 | 2_2:-12756817 | Msa0238900:CDS |
| TTGCTAAAATGTGATTATCC+AGG | 0.506481 | 2_2:-12758356 | Msa0238900:intron |
| TCCTTTGTTTCTCTCCGGAT+AGG | 0.506615 | 2_2:+12757728 | None:intergenic |
| TCACTGATGTCAAGCTTATG+TGG | 0.507967 | 2_2:+12757628 | None:intergenic |
| TTCTCTCCGGATAGGACACC+AGG | 0.509293 | 2_2:+12757736 | None:intergenic |
| CTTCTTGGTCAATACTCTAC+GGG | 0.509946 | 2_2:-12758401 | Msa0238900:CDS |
| TTTGCTGGATATCCCAAAGA+AGG | 0.510260 | 2_2:-12756993 | Msa0238900:CDS |
| GAAGGATTTGCTGATCCACT+AGG | 0.516671 | 2_2:-12757058 | Msa0238900:CDS |
| AACCATGAGTTAGGTAGAAA+CGG | 0.518317 | 2_2:+12760712 | None:intergenic |
| GCTTCTTGGTCAATACTCTA+CGG | 0.519068 | 2_2:-12758402 | Msa0238900:CDS |
| ACTATTGATGTAACTGCACT+TGG | 0.522383 | 2_2:+12758684 | None:intergenic |
| AGGTAGAAACGGTTGAGGCT+TGG | 0.530001 | 2_2:+12760723 | None:intergenic |
| GAAGTTGCGCGTGTATACAT+TGG | 0.534004 | 2_2:-12757358 | Msa0238900:CDS |
| TACTGACAGACTAAAGCCCT+TGG | 0.536151 | 2_2:-12758640 | Msa0238900:CDS |
| AAGTTGCGCGTGTATACATT+GGG | 0.538555 | 2_2:-12757357 | Msa0238900:intron |
| CAAAGAAGCTATGATTTCAC+TGG | 0.538899 | 2_2:-12757703 | Msa0238900:CDS |
| AAGGAGATGCCAACAATGAT+GGG | 0.539017 | 2_2:-12756798 | Msa0238900:CDS |
| TCTAACCATTCACTTCAGAT+GGG | 0.540850 | 2_2:+12760836 | None:intergenic |
| GTAACTCAGGAGCACACATT+GGG | 0.545234 | 2_2:-12758219 | Msa0238900:intron |
| TTTAGCATCAAAATCGATGT+TGG | 0.545850 | 2_2:+12758436 | None:intergenic |
| AACCGTTTCTACCTAACTCA+TGG | 0.552088 | 2_2:-12760714 | Msa0238900:CDS |
| ATTGATGTAACTGCACTTGG+AGG | 0.553248 | 2_2:+12758687 | None:intergenic |
| TGTAACTCAGGAGCACACAT+TGG | 0.556316 | 2_2:-12758220 | Msa0238900:intron |
| ATATCTATAAGCAACTTCCA+AGG | 0.557333 | 2_2:+12758623 | None:intergenic |
| TTGGTGTCGCTTGCACAAGC+AGG | 0.557465 | 2_2:-12761712 | Msa0238900:CDS |
| TTGTGAAAATAGTAATGGGA+AGG | 0.557534 | 2_2:+12756176 | None:intergenic |
| ACTACCCCATCTGAAGTGAA+TGG | 0.563701 | 2_2:-12760841 | Msa0238900:intron |
| TATAGTCTGGTCCTGATGAA+AGG | 0.565654 | 2_2:-12757979 | Msa0238900:intron |
| TGTGAAAATAGTAATGGGAA+GGG | 0.569245 | 2_2:+12756177 | None:intergenic |
| GTGAAAATAGTAATGGGAAG+GGG | 0.569406 | 2_2:+12756178 | None:intergenic |
| AACAATGATGGGCAAAGCCA+AGG | 0.570949 | 2_2:-12756787 | Msa0238900:CDS |
| TCTCGACAATGAATTTGCAA+AGG | 0.571796 | 2_2:-12756742 | Msa0238900:intron |
| CAAAGAAGGCTTGTGATCGT+CGG | 0.572542 | 2_2:-12756979 | Msa0238900:CDS |
| GAAGGAACAGAACGATCTGT+TGG | 0.574737 | 2_2:-12757020 | Msa0238900:CDS |
| TATCTATAAGCAACTTCCAA+GGG | 0.575490 | 2_2:+12758624 | None:intergenic |
| TCTCTGAAGTGCTCAACACT+GGG | 0.578371 | 2_2:+12756534 | None:intergenic |
| GATGGAGATGGACGAATCAG+TGG | 0.586299 | 2_2:-12761963 | Msa0238900:CDS |
| AAAGTTGTCAGGCCATTGAA+AGG | 0.591326 | 2_2:+12757917 | None:intergenic |
| GTAACAATTGTGGACACTCC+TGG | 0.594031 | 2_2:-12757754 | Msa0238900:CDS |
| CAAGCCATAGATGACATGCT+AGG | 0.594699 | 2_2:-12756456 | Msa0238900:CDS |
| GAGTTAGGTAGAAACGGTTG+AGG | 0.596774 | 2_2:+12760718 | None:intergenic |
| CGTGTAATTTCATCTTTACG+AGG | 0.598565 | 2_2:-12757595 | Msa0238900:CDS |
| AAGGATTTGCTGATCCACTA+GGG | 0.600452 | 2_2:-12757057 | Msa0238900:CDS |
| ATACTTGTTGAGTATCAACT+TGG | 0.610855 | 2_2:+12757533 | None:intergenic |
| TTGACCAAGAAGCATGACCA+TGG | 0.611614 | 2_2:+12758412 | None:intergenic |
| CAAATGCCACTTACCAGCAA+CGG | 0.616771 | 2_2:+12758585 | None:intergenic |
| CTAACCATTCACTTCAGATG+GGG | 0.630176 | 2_2:+12760837 | None:intergenic |
| TGACCAAGAAGCATGACCAT+GGG | 0.632896 | 2_2:+12758413 | None:intergenic |
| TCCTATCCGGAGAGAAACAA+AGG | 0.636447 | 2_2:-12757729 | Msa0238900:CDS |
| TCAACACTGGGAAAATCACC+AGG | 0.645712 | 2_2:+12756546 | None:intergenic |
| GTTGGATGAAGTAACAATTG+TGG | 0.645886 | 2_2:-12757764 | Msa0238900:CDS |
| AGAGAGTATCATCTACCACC+TGG | 0.657076 | 2_2:-12756564 | Msa0238900:CDS |
| CTTGCTGATAACAAACGACA+AGG | 0.678146 | 2_2:-12761873 | Msa0238900:CDS |
| CTGACTTATTCAAAACCACA+CGG | 0.679980 | 2_2:+12757557 | None:intergenic |
| AAACTGCTACGTATCAACAA+TGG | 0.685946 | 2_2:-12762087 | Msa0238900:CDS |
| TTCATCTTTACGAGGCAACG+AGG | 0.693384 | 2_2:-12757587 | Msa0238900:CDS |
| GAGTCTATGGAGCATTGATG+TGG | 0.702997 | 2_2:-12757408 | Msa0238900:CDS |
| CAACGAGGACAAGATCCGTG+TGG | 0.758449 | 2_2:-12757572 | Msa0238900:CDS |
| ACACTGGGAAAATCACCAGG+TGG | 0.772401 | 2_2:+12756549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATATTATTAATAA+AGG | + | chr2_2:12759371-12759390 | None:intergenic | 0.0% |
| !! | GATAAAATATAAATTGAAAA+TGG | + | chr2_2:12756536-12756555 | None:intergenic | 10.0% |
| !!! | TGTATTTTTTTTTTTTTGAA+AGG | + | chr2_2:12759088-12759107 | None:intergenic | 10.0% |
| !!! | AGTATATTGTTTTTAAATTA+TGG | - | chr2_2:12759114-12759133 | Msa0238900:intron | 10.0% |
| !! | CAAATTAATATTAAGAATAT+AGG | + | chr2_2:12759588-12759607 | None:intergenic | 10.0% |
| !! | ATATTAACAATTCAAATGTT+TGG | - | chr2_2:12757100-12757119 | Msa0238900:intron | 15.0% |
| !! | GCAAAATAACAAATAATATT+AGG | + | chr2_2:12758880-12758899 | None:intergenic | 15.0% |
| !! | ATTAAATAAAGAATTGATGA+GGG | + | chr2_2:12758911-12758930 | None:intergenic | 15.0% |
| !! | AATTAAATAAAGAATTGATG+AGG | + | chr2_2:12758912-12758931 | None:intergenic | 15.0% |
| !!! | AGTAATAATACATGTTTTAA+AGG | - | chr2_2:12759039-12759058 | Msa0238900:intron | 15.0% |
| !! | TTGTATATTGTTTAAGTATA+AGG | - | chr2_2:12759201-12759220 | Msa0238900:intron | 15.0% |
| !!! | GTATGTTTTAGTTATAAAAT+AGG | + | chr2_2:12759782-12759801 | None:intergenic | 15.0% |
| !!! | TTATCTTTTAATTTATAGTC+TGG | - | chr2_2:12760347-12760366 | Msa0238900:intron | 15.0% |
| !! | TTGCTAATTTCAAATTATTT+AGG | - | chr2_2:12761389-12761408 | Msa0238900:intron | 15.0% |
| !! | GAAAAATAATTGAGAAATTA+AGG | + | chr2_2:12761658-12761677 | None:intergenic | 15.0% |
| !!! | TTTTCATTTTATGTTTTACA+TGG | - | chr2_2:12761673-12761692 | Msa0238900:intron | 15.0% |
| !! | AGTCAATAGATAAGATTAAT+AGG | + | chr2_2:12756780-12756799 | None:intergenic | 20.0% |
| !!! | ATTTCTATATTTGATTCGTA+AGG | + | chr2_2:12757927-12757946 | None:intergenic | 20.0% |
| !!! | AGTGTTTAGCTTTAAAATAA+AGG | - | chr2_2:12758183-12758202 | Msa0238900:CDS | 20.0% |
| !!! | ATGTTCTAATTGATTCTTTT+TGG | - | chr2_2:12758247-12758266 | Msa0238900:intron | 20.0% |
| !!! | GTTAGATTTGATATTTTAAG+AGG | - | chr2_2:12758732-12758751 | Msa0238900:intron | 20.0% |
| !! | ATTTAAAAATATCACGTGAA+AGG | - | chr2_2:12758803-12758822 | Msa0238900:intron | 20.0% |
| !! | TTAACATCATCATATTTACA+TGG | + | chr2_2:12759851-12759870 | None:intergenic | 20.0% |
| !!! | ATCATCAATTTTGTAAATGA+AGG | + | chr2_2:12760052-12760071 | None:intergenic | 20.0% |
| !!! | ATTTACAAAATTGATGATTG+CGG | - | chr2_2:12760054-12760073 | Msa0238900:intron | 20.0% |
| !!! | TAAAAGATAAATGAGTTTTG+AGG | + | chr2_2:12760337-12760356 | None:intergenic | 20.0% |
| !! | TATAAACAAATAAAACTCAC+TGG | + | chr2_2:12760494-12760513 | None:intergenic | 20.0% |
| !! | ATCAATTCACTTCATATTAA+TGG | - | chr2_2:12761193-12761212 | Msa0238900:intron | 20.0% |
| !!! | AAATTATTTAGGTTACTTGT+TGG | - | chr2_2:12761400-12761419 | Msa0238900:intron | 20.0% |
| !! | AAACATAAATGAAAAGTTAC+AGG | + | chr2_2:12761710-12761729 | None:intergenic | 20.0% |
| !! | CTTTAAACATTTCAATCATA+TGG | + | chr2_2:12761946-12761965 | None:intergenic | 20.0% |
| !!! | CATTTTACATTTCAATCATA+TGG | + | chr2_2:12761981-12762000 | None:intergenic | 20.0% |
| !! | TACATTTCTTAAACATATGA+TGG | + | chr2_2:12762021-12762040 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATGTAAGATT+TGG | - | chr2_2:12762026-12762045 | Msa0238900:intron | 20.0% |
| !! | ACGATTTGTTTCATTTGATT+TGG | - | chr2_2:12756339-12756358 | Msa0238900:three_prime_UTR | 25.0% |
| !!! | TTGGTGTTTTTTATTGTAGA+TGG | - | chr2_2:12756358-12756377 | Msa0238900:three_prime_UTR | 25.0% |
| !!! | TTTTTTATTGTAGATGGAGA+TGG | - | chr2_2:12756364-12756383 | Msa0238900:three_prime_UTR | 25.0% |
| ! | TTAATAAATGACACTTGACA+CGG | - | chr2_2:12756807-12756826 | Msa0238900:CDS | 25.0% |
| ! | TAAAATCCTTAATTCCTTAG+CGG | + | chr2_2:12757207-12757226 | None:intergenic | 25.0% |
| !!! | GTTTAAAAGTTTTGTCACTA+AGG | - | chr2_2:12757231-12757250 | Msa0238900:intron | 25.0% |
| !!! | TCTTTTTTTATTGATTGCAG+TGG | - | chr2_2:12757288-12757307 | Msa0238900:intron | 25.0% |
| !! | GTTTGCTGGAAAAAAAATAA+GGG | + | chr2_2:12757462-12757481 | None:intergenic | 25.0% |
| !!! | AGTTTGCTGGAAAAAAAATA+AGG | + | chr2_2:12757463-12757482 | None:intergenic | 25.0% |
| ! | AATGATGTTTATATGCTTCA+AGG | + | chr2_2:12757879-12757898 | None:intergenic | 25.0% |
| ! | ATATAAACATCATTTCCTGA+TGG | - | chr2_2:12757885-12757904 | Msa0238900:CDS | 25.0% |
| !! | TTAGAGAACATTTCTTCTTT+TGG | - | chr2_2:12758012-12758031 | Msa0238900:intron | 25.0% |
| !! | TAGAGAACATTTCTTCTTTT+GGG | - | chr2_2:12758013-12758032 | Msa0238900:intron | 25.0% |
| ! | ATAGCTAGCATAATCTTTAT+AGG | + | chr2_2:12758078-12758097 | None:intergenic | 25.0% |
| ! | ATTATTGCCAATGTAAAAGT+GGG | + | chr2_2:12758161-12758180 | None:intergenic | 25.0% |
| ! | TATTATTGCCAATGTAAAAG+TGG | + | chr2_2:12758162-12758181 | None:intergenic | 25.0% |
| ! | ATATTTGCCAAGGAAAAATA+AGG | + | chr2_2:12758227-12758246 | None:intergenic | 25.0% |
| ! | ATTAGAACATATATTTGCCA+AGG | + | chr2_2:12758237-12758256 | None:intergenic | 25.0% |
| ! | AATGTAACAATGAATGGAAA+TGG | + | chr2_2:12758365-12758384 | None:intergenic | 25.0% |
| !!! | GTTAGATCTGATATTTTAAG+AGG | - | chr2_2:12758760-12758779 | Msa0238900:intron | 25.0% |
| !! | CAAATAATATTAGGTTGTAG+TGG | + | chr2_2:12758871-12758890 | None:intergenic | 25.0% |
| ! | ATCCTACTTAAAAACAGTTT+AGG | - | chr2_2:12759509-12759528 | Msa0238900:intron | 25.0% |
| !! | TTTACAAAATTGATGATTGC+GGG | - | chr2_2:12760055-12760074 | Msa0238900:intron | 25.0% |
| ! | AGATTACAATCAGAAAAACA+TGG | - | chr2_2:12760222-12760241 | Msa0238900:intron | 25.0% |
| !!! | GTGTTGTAAGCATTTTATTT+CGG | - | chr2_2:12761150-12761169 | Msa0238900:intron | 25.0% |
| ! | GTCAAGAATATCAAATTAAC+TGG | + | chr2_2:12761228-12761247 | None:intergenic | 25.0% |
| ! | TTTCTAGATAACCTTAAGAA+AGG | - | chr2_2:12762132-12762151 | Msa0238900:exon | 25.0% |
| !! | AGCGTTTTTGAAAATGAAGA+CGG | - | chr2_2:12756211-12756230 | Msa0238900:three_prime_UTR | 30.0% |
| ! | AACAAACGACAAGGATTTTT+AGG | - | chr2_2:12756475-12756494 | Msa0238900:CDS | 30.0% |
| !! | TAATGACAAGCTCTAAAACA+CGG | + | chr2_2:12756942-12756961 | None:intergenic | 30.0% |
| !! | CTTTGATTTTAAATCCGCTA+AGG | - | chr2_2:12757190-12757209 | Msa0238900:intron | 30.0% |
| TTAAATCCGCTAAGGAATTA+AGG | - | chr2_2:12757198-12757217 | Msa0238900:intron | 30.0% | |
| ! | TTTATTGATTGCAGTGGATA+AGG | - | chr2_2:12757294-12757313 | Msa0238900:intron | 30.0% |
| GTATCTAATCCTTCAATAAC+AGG | + | chr2_2:12757334-12757353 | None:intergenic | 30.0% | |
| TTAGTAATTAAGCACAACGT+GGG | + | chr2_2:12757392-12757411 | None:intergenic | 30.0% | |
| !! | TTGTCAATTTCTTAGTTTGC+TGG | + | chr2_2:12757476-12757495 | None:intergenic | 30.0% |
| TGAAACTTATGATTCCTAGT+TGG | - | chr2_2:12757720-12757739 | Msa0238900:CDS | 30.0% | |
| !! | CCAACAACTTGTTAAACAAA+TGG | + | chr2_2:12757785-12757804 | None:intergenic | 30.0% |
| CCATTTGTTTAACAAGTTGT+TGG | - | chr2_2:12757782-12757801 | Msa0238900:intron | 30.0% | |
| ! | ACAAGTTAACATTTTCCATC+AGG | + | chr2_2:12757903-12757922 | None:intergenic | 30.0% |
| !!! | TTCTTTTGGGTTACTTAACA+TGG | - | chr2_2:12758026-12758045 | Msa0238900:intron | 30.0% |
| !!! | TCTTTTGGGTTACTTAACAT+GGG | - | chr2_2:12758027-12758046 | Msa0238900:intron | 30.0% |
| !!! | TTTCCTCTTTGTTGTTCTTT+TGG | - | chr2_2:12758114-12758133 | Msa0238900:intron | 30.0% |
| GTTCTGTACAATTTCCTATT+AGG | - | chr2_2:12758296-12758315 | Msa0238900:intron | 30.0% | |
| ATGAAATACTACCTCCTAAT+AGG | + | chr2_2:12758313-12758332 | None:intergenic | 30.0% | |
| CAATGAATGGAAATGGAAAT+GGG | + | chr2_2:12758358-12758377 | None:intergenic | 30.0% | |
| ACAATGAATGGAAATGGAAA+TGG | + | chr2_2:12758359-12758378 | None:intergenic | 30.0% | |
| CTCATCAATGTAACAATGAA+TGG | + | chr2_2:12758371-12758390 | None:intergenic | 30.0% | |
| !!! | CACCTAAACTGTTTTTAAGT+AGG | + | chr2_2:12759514-12759533 | None:intergenic | 30.0% |
| TATCTATAAGCAACTTCCAA+GGG | + | chr2_2:12759718-12759737 | None:intergenic | 30.0% | |
| ATATCTATAAGCAACTTCCA+AGG | + | chr2_2:12759719-12759738 | None:intergenic | 30.0% | |
| TTTAGCATCAAAATCGATGT+TGG | + | chr2_2:12759906-12759925 | None:intergenic | 30.0% | |
| TTGCTAAAATGTGATTATCC+AGG | - | chr2_2:12759983-12760002 | Msa0238900:intron | 30.0% | |
| TAAAATGTGATTATCCAGGT+TGG | - | chr2_2:12759987-12760006 | Msa0238900:intron | 30.0% | |
| ! | TTACAAAATTGATGATTGCG+GGG | - | chr2_2:12760056-12760075 | Msa0238900:intron | 30.0% |
| TATACATTCTCTTGTAACTC+AGG | - | chr2_2:12760107-12760126 | Msa0238900:intron | 30.0% | |
| ACAACAAATCTATCTGTTGT+AGG | + | chr2_2:12760152-12760171 | None:intergenic | 30.0% | |
| !! | AGATAGATTTGTTGTTGTCA+TGG | - | chr2_2:12760157-12760176 | Msa0238900:intron | 30.0% |
| ! | TTTTGTTCTGATATTGTCTG+CGG | - | chr2_2:12760191-12760210 | Msa0238900:intron | 30.0% |
| !! | TATTTGTGTCTTTTAGCTGT+TGG | - | chr2_2:12760557-12760576 | Msa0238900:intron | 30.0% |
| ! | ATACTTGTTGAGTATCAACT+TGG | + | chr2_2:12760809-12760828 | None:intergenic | 30.0% |
| ATCACAAGATGGTAAAATGA+TGG | + | chr2_2:12761077-12761096 | None:intergenic | 30.0% | |
| ! | TGGATTTTCAAATCACAAGA+TGG | + | chr2_2:12761088-12761107 | None:intergenic | 30.0% |
| ATTACAGTGTTGTCATTCTT+TGG | + | chr2_2:12761108-12761127 | None:intergenic | 30.0% | |
| AATGACAACACTGTAATAGT+TGG | - | chr2_2:12761111-12761130 | Msa0238900:intron | 30.0% | |
| ATGCTTACAACACTAAACAT+TGG | + | chr2_2:12761143-12761162 | None:intergenic | 30.0% | |
| AATGATAAGCCTACAAATGA+AGG | - | chr2_2:12761263-12761282 | Msa0238900:intron | 30.0% | |
| CATAATTAGCCATCTTAAGA+AGG | - | chr2_2:12761522-12761541 | Msa0238900:intron | 30.0% | |
| AGAAATTAAGGAACCAAAGT+AGG | + | chr2_2:12761646-12761665 | None:intergenic | 30.0% | |
| ! | CCTGTTTTGTAAAACATAAC+AGG | + | chr2_2:12761750-12761769 | None:intergenic | 30.0% |
| ! | CCTGTTATGTTTTACAAAAC+AGG | - | chr2_2:12761747-12761766 | Msa0238900:intron | 30.0% |
| TGAATTTCTTCAAAAGCTCT+GGG | + | chr2_2:12761918-12761937 | None:intergenic | 30.0% | |
| AGTTATTGAAGAGTTGTAGA+TGG | - | chr2_2:12762059-12762078 | Msa0238900:intron | 30.0% | |
| AAACTGCTACGTATCAACAA+TGG | - | chr2_2:12756252-12756271 | Msa0238900:three_prime_UTR | 35.0% | |
| TGGTTCAATTTAGCAGATTC+AGG | - | chr2_2:12756272-12756291 | Msa0238900:three_prime_UTR | 35.0% | |
| !! | TTTGATTTGTTACGAGCAGT+TGG | - | chr2_2:12756608-12756627 | Msa0238900:intron | 35.0% |
| GACATTTCTGATCGAAAATG+TGG | + | chr2_2:12756920-12756939 | None:intergenic | 35.0% | |
| ATCAGAGATCATTCTACAAG+CGG | + | chr2_2:12757042-12757061 | None:intergenic | 35.0% | |
| ! | CTCTGATTCGTAGTTTCAAA+TGG | - | chr2_2:12757055-12757074 | Msa0238900:CDS | 35.0% |
| GTTAAACCACCTGTTATTGA+AGG | - | chr2_2:12757322-12757341 | Msa0238900:intron | 35.0% | |
| TCTAATCCTTCAATAACAGG+TGG | + | chr2_2:12757331-12757350 | None:intergenic | 35.0% | |
| CTTAGTAATTAAGCACAACG+TGG | + | chr2_2:12757393-12757412 | None:intergenic | 35.0% | |
| TCTAACCATTCACTTCAGAT+GGG | + | chr2_2:12757506-12757525 | None:intergenic | 35.0% | |
| TTCTAACCATTCACTTCAGA+TGG | + | chr2_2:12757507-12757526 | None:intergenic | 35.0% | |
| AACCATGAGTTAGGTAGAAA+CGG | + | chr2_2:12757630-12757649 | None:intergenic | 35.0% | |
| ATCACCTTAAAGCCACAAAA+AGG | + | chr2_2:12757748-12757767 | None:intergenic | 35.0% | |
| CATCCAAAAGAACAACAAAG+AGG | + | chr2_2:12758120-12758139 | None:intergenic | 35.0% | |
| ! | TGTTGTTCTTTTGGATGAAG+CGG | - | chr2_2:12758123-12758142 | Msa0238900:intron | 35.0% |
| !! | ATTACTGCCCACTTTTACAT+TGG | - | chr2_2:12758151-12758170 | Msa0238900:intron | 35.0% |
| AAGGAAAAATAAGGCGATTG+TGG | + | chr2_2:12758218-12758237 | None:intergenic | 35.0% | |
| !!! | ACAATCGCCTTATTTTTCCT+TGG | - | chr2_2:12758217-12758236 | Msa0238900:intron | 35.0% |
| CTGTACAATTTCCTATTAGG+AGG | - | chr2_2:12758299-12758318 | Msa0238900:intron | 35.0% | |
| CACTTGCACAAACCAATATT+TGG | - | chr2_2:12758397-12758416 | Msa0238900:CDS | 35.0% | |
| GTGGACATGTTTCCAAATAT+TGG | + | chr2_2:12758412-12758431 | None:intergenic | 35.0% | |
| !!! | TTTAAGAGGCACGTGTTTTT+TGG | - | chr2_2:12758774-12758793 | Msa0238900:intron | 35.0% |
| ! | ATATTAGGTTGTAGTGGAGT+GGG | + | chr2_2:12758865-12758884 | None:intergenic | 35.0% |
| ! | AATATTAGGTTGTAGTGGAG+TGG | + | chr2_2:12758866-12758885 | None:intergenic | 35.0% |
| ACTATTGATGTAACTGCACT+TGG | + | chr2_2:12759658-12759677 | None:intergenic | 35.0% | |
| GCAGTTACATCAATAGTTGA+TGG | - | chr2_2:12759661-12759680 | Msa0238900:intron | 35.0% | |
| TACGTGCAATTGACGAAATT+TGG | + | chr2_2:12759804-12759823 | None:intergenic | 35.0% | |
| ! | AAATCGATGTTGGTCTGAAA+GGG | + | chr2_2:12759896-12759915 | None:intergenic | 35.0% |
| ! | AAAATCGATGTTGGTCTGAA+AGG | + | chr2_2:12759897-12759916 | None:intergenic | 35.0% |
| CAATAACAATTCAACCAACC+TGG | + | chr2_2:12760004-12760023 | None:intergenic | 35.0% | |
| ACAATCAGAAAAACATGGTG+TGG | - | chr2_2:12760227-12760246 | Msa0238900:intron | 35.0% | |
| CAATCAGAAAAACATGGTGT+GGG | - | chr2_2:12760228-12760247 | Msa0238900:intron | 35.0% | |
| ATGTGTTCTAGTAGTGTTGT+TGG | - | chr2_2:12760305-12760324 | Msa0238900:intron | 35.0% | |
| TTAACAGCTATAGTGTTTCC+CGG | + | chr2_2:12760392-12760411 | None:intergenic | 35.0% | |
| AATGCTGATATGCCTTTCAA+TGG | - | chr2_2:12760410-12760429 | Msa0238900:intron | 35.0% | |
| CAAATAAAACTCACTGGATG+TGG | + | chr2_2:12760488-12760507 | None:intergenic | 35.0% | |
| ! | ACATCGATTGTCATTTGACT+TGG | + | chr2_2:12760521-12760540 | None:intergenic | 35.0% |
| GTTGGATGAAGTAACAATTG+TGG | - | chr2_2:12760575-12760594 | Msa0238900:intron | 35.0% | |
| CAAAGAAGCTATGATTTCAC+TGG | - | chr2_2:12760636-12760655 | Msa0238900:intron | 35.0% | |
| !! | ATTTCACTGGTGTTGTATCT+TGG | - | chr2_2:12760649-12760668 | Msa0238900:intron | 35.0% |
| GAGAAGAATGACATCACATT+TGG | + | chr2_2:12760682-12760701 | None:intergenic | 35.0% | |
| CGTGTAATTTCATCTTTACG+AGG | - | chr2_2:12760744-12760763 | Msa0238900:intron | 35.0% | |
| CTGACTTATTCAAAACCACA+CGG | + | chr2_2:12760785-12760804 | None:intergenic | 35.0% | |
| TCAGCAAATCCTTCATTTGT+AGG | + | chr2_2:12761275-12761294 | None:intergenic | 35.0% | |
| ! | AATGAGTTTTTGTTGAGCCT+TGG | + | chr2_2:12761572-12761591 | None:intergenic | 35.0% |
| TCTCGACAATGAATTTGCAA+AGG | - | chr2_2:12761597-12761616 | Msa0238900:intron | 35.0% | |
| TCTATGGCTTGAATCATCTT+TGG | + | chr2_2:12761874-12761893 | None:intergenic | 35.0% | |
| ATATCCTAGCATGTCATCTA+TGG | + | chr2_2:12761890-12761909 | None:intergenic | 35.0% | |
| CTGAATTTCTTCAAAAGCTC+TGG | + | chr2_2:12761919-12761938 | None:intergenic | 35.0% | |
| ! | GTGAAAATAGTAATGGGAAG+GGG | + | chr2_2:12762164-12762183 | None:intergenic | 35.0% |
| TTCTCAACTCAAGCAGCTTT+GGG | - | chr2_2:12756441-12756460 | Msa0238900:CDS | 40.0% | |
| CTTGCTGATAACAAACGACA+AGG | - | chr2_2:12756466-12756485 | Msa0238900:CDS | 40.0% | |
| GATCGAAAATGTGGTATCCT+GGG | + | chr2_2:12756911-12756930 | None:intergenic | 40.0% | |
| TGATCGAAAATGTGGTATCC+TGG | + | chr2_2:12756912-12756931 | None:intergenic | 40.0% | |
| TCAGAGATCATTCTACAAGC+GGG | + | chr2_2:12757041-12757060 | None:intergenic | 40.0% | |
| CTAACCATTCACTTCAGATG+GGG | + | chr2_2:12757505-12757524 | None:intergenic | 40.0% | |
| AACCGTTTCTACCTAACTCA+TGG | - | chr2_2:12757625-12757644 | Msa0238900:CDS | 40.0% | |
| TTTGCAGTGAACCATGAGTT+AGG | + | chr2_2:12757639-12757658 | None:intergenic | 40.0% | |
| GTTTAACAAGTTGTTGGTGC+TGG | - | chr2_2:12757788-12757807 | Msa0238900:intron | 40.0% | |
| TTACTTAACATGGGCCCTAA+GGG | - | chr2_2:12758036-12758055 | Msa0238900:intron | 40.0% | |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr2_2:12758053-12758072 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr2_2:12758054-12758073 | None:intergenic | 40.0% |
| !! | GATTCTTTTTGGTGCGAATG+TGG | - | chr2_2:12758258-12758277 | Msa0238900:intron | 40.0% |
| GAATGGAAATGGAAATGGGA+GGG | + | chr2_2:12758354-12758373 | None:intergenic | 40.0% | |
| TGAATGGAAATGGAAATGGG+AGG | + | chr2_2:12758355-12758374 | None:intergenic | 40.0% | |
| ! | GAACCAAAACACAGTCGTTT+TGG | + | chr2_2:12758629-12758648 | None:intergenic | 40.0% |
| !!! | AACGACTGTGTTTTGGTTCT+TGG | - | chr2_2:12758630-12758649 | Msa0238900:CDS | 40.0% |
| !!! | CTGTGTTTTGGTTCTTGGAT+CGG | - | chr2_2:12758635-12758654 | Msa0238900:CDS | 40.0% |
| AAGGAAGAGGAAAGAGAAAG+AGG | - | chr2_2:12758704-12758723 | Msa0238900:intron | 40.0% | |
| CATGTGCATAGTTGTCAAAG+CGG | + | chr2_2:12759486-12759505 | None:intergenic | 40.0% | |
| ATTGATGTAACTGCACTTGG+AGG | + | chr2_2:12759655-12759674 | None:intergenic | 40.0% | |
| ! | TGATTTTGTATCTCCGTTGC+TGG | - | chr2_2:12759741-12759760 | Msa0238900:intron | 40.0% |
| !! | CGATTTTGATGCTAAACCCA+TGG | - | chr2_2:12759910-12759929 | Msa0238900:intron | 40.0% |
| GCTTCTTGGTCAATACTCTA+CGG | - | chr2_2:12759937-12759956 | Msa0238900:intron | 40.0% | |
| CTTCTTGGTCAATACTCTAC+GGG | - | chr2_2:12759938-12759957 | Msa0238900:intron | 40.0% | |
| AATCTATCTGTTGTAGGCTC+TGG | + | chr2_2:12760146-12760165 | None:intergenic | 40.0% | |
| TATAGTCTGGTCCTGATGAA+AGG | - | chr2_2:12760360-12760379 | Msa0238900:intron | 40.0% | |
| !! | TCCTGATGAAAGGAGTATTC+CGG | - | chr2_2:12760370-12760389 | Msa0238900:intron | 40.0% |
| AAAGTTGTCAGGCCATTGAA+AGG | + | chr2_2:12760425-12760444 | None:intergenic | 40.0% | |
| ! | TTCAATGGCCTGACAACTTT+TGG | - | chr2_2:12760425-12760444 | Msa0238900:intron | 40.0% |
| ATGAACCTCCAAAAGTTGTC+AGG | + | chr2_2:12760436-12760455 | None:intergenic | 40.0% | |
| ! | TTGTGTCCTTTGTTTCTCTC+CGG | + | chr2_2:12760619-12760638 | None:intergenic | 40.0% |
| CAAGCTTATGTGGATCGAAT+AGG | + | chr2_2:12760704-12760723 | None:intergenic | 40.0% | |
| TCACTGATGTCAAGCTTATG+TGG | + | chr2_2:12760714-12760733 | None:intergenic | 40.0% | |
| TTGCAGCTTATGAGAGTCTA+TGG | - | chr2_2:12760918-12760937 | Msa0238900:intron | 40.0% | |
| AAGTTGCGCGTGTATACATT+GGG | - | chr2_2:12760982-12761001 | Msa0238900:intron | 40.0% | |
| !! | AAGGATTTGCTGATCCACTA+GGG | - | chr2_2:12761282-12761301 | Msa0238900:intron | 40.0% |
| ! | TCGAAGAGATTTTTCCCTAG+TGG | + | chr2_2:12761299-12761318 | None:intergenic | 40.0% |
| AGGGAAAAATCTCTTCGAGA+AGG | - | chr2_2:12761301-12761320 | Msa0238900:intron | 40.0% | |
| TTTGCTGGATATCCCAAAGA+AGG | - | chr2_2:12761346-12761365 | Msa0238900:intron | 40.0% | |
| GATGATGACATATCACGAAC+TGG | - | chr2_2:12761447-12761466 | Msa0238900:intron | 40.0% | |
| TTGGCATCTCCTTCTTAAGA+TGG | + | chr2_2:12761534-12761553 | None:intergenic | 40.0% | |
| AAGGAGATGCCAACAATGAT+GGG | - | chr2_2:12761541-12761560 | Msa0238900:intron | 40.0% | |
| AAAGTAGGCAAAAGTGAAGG+TGG | + | chr2_2:12761631-12761650 | None:intergenic | 40.0% | |
| !! | ACCTTCACTTTTGCCTACTT+TGG | - | chr2_2:12761630-12761649 | Msa0238900:intron | 40.0% |
| ACCAAAGTAGGCAAAAGTGA+AGG | + | chr2_2:12761634-12761653 | None:intergenic | 40.0% | |
| !!! | CACTTCAGAGAAGTTTTGAG+TGG | - | chr2_2:12761817-12761836 | Msa0238900:intron | 40.0% |
| !! | AGGGGTATCTTCCTTTCTTA+AGG | + | chr2_2:12762146-12762165 | None:intergenic | 40.0% |
| GTTCTCAACTCAAGCAGCTT+TGG | - | chr2_2:12756440-12756459 | Msa0238900:CDS | 45.0% | |
| TGAGTTCGTTACTGCTATGC+AGG | - | chr2_2:12756504-12756523 | Msa0238900:CDS | 45.0% | |
| TGTCGTTCATTGACATACCC+AGG | - | chr2_2:12756891-12756910 | Msa0238900:intron | 45.0% | |
| ! | ACTACCCCATCTGAAGTGAA+TGG | - | chr2_2:12757498-12757517 | Msa0238900:intron | 45.0% |
| GAGTTAGGTAGAAACGGTTG+AGG | + | chr2_2:12757624-12757643 | None:intergenic | 45.0% | |
| ! | TCCTAGTTGGAGCCTTTTTG+TGG | - | chr2_2:12757733-12757752 | Msa0238900:CDS | 45.0% |
| !! | GGAGCCTTTTTGTGGCTTTA+AGG | - | chr2_2:12757741-12757760 | Msa0238900:CDS | 45.0% |
| GTTACTTAACATGGGCCCTA+AGG | - | chr2_2:12758035-12758054 | Msa0238900:intron | 45.0% | |
| !! | CTTTTTGGTGCGAATGTGGT+TGG | - | chr2_2:12758262-12758281 | Msa0238900:intron | 45.0% |
| GGAAATGGGAGGGCAAAATA+AGG | + | chr2_2:12758344-12758363 | None:intergenic | 45.0% | |
| GATTGACAACAGAGGTCATG+TGG | + | chr2_2:12758431-12758450 | None:intergenic | 45.0% | |
| ATGACCTCTGTTGTCAATCG+CGG | - | chr2_2:12758432-12758451 | Msa0238900:CDS | 45.0% | |
| TATGCTCTGACCCGAAATAG+CGG | + | chr2_2:12758588-12758607 | None:intergenic | 45.0% | |
| ! | GAGCCAAAACGACTGTGTTT+TGG | - | chr2_2:12758623-12758642 | Msa0238900:CDS | 45.0% |
| TCTTGGATCGGTAGATCTGA+AGG | - | chr2_2:12758647-12758666 | Msa0238900:CDS | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | + | chr2_2:12759478-12759497 | None:intergenic | 45.0% | |
| TACTGACAGACTAAAGCCCT+TGG | - | chr2_2:12759699-12759718 | Msa0238900:intron | 45.0% | |
| ! | CAAATGCCACTTACCAGCAA+CGG | + | chr2_2:12759757-12759776 | None:intergenic | 45.0% |
| AAACCCATGGTCATGCTTCT+TGG | - | chr2_2:12759923-12759942 | Msa0238900:intron | 45.0% | |
| ! | TGACCAAGAAGCATGACCAT+GGG | + | chr2_2:12759929-12759948 | None:intergenic | 45.0% |
| ! | TTGACCAAGAAGCATGACCA+TGG | + | chr2_2:12759930-12759949 | None:intergenic | 45.0% |
| TGATGATTGCGGGGCATAAT+TGG | - | chr2_2:12760065-12760084 | Msa0238900:intron | 45.0% | |
| GATGATTGCGGGGCATAATT+GGG | - | chr2_2:12760066-12760085 | Msa0238900:intron | 45.0% | |
| ! | TGTAACTCAGGAGCACACAT+TGG | - | chr2_2:12760119-12760138 | Msa0238900:intron | 45.0% |
| ! | GTAACTCAGGAGCACACATT+GGG | - | chr2_2:12760120-12760139 | Msa0238900:intron | 45.0% |
| !! | CCTGATGAAAGGAGTATTCC+GGG | - | chr2_2:12760371-12760390 | Msa0238900:intron | 45.0% |
| ! | AATGGCCTGACAACTTTTGG+AGG | - | chr2_2:12760428-12760447 | Msa0238900:intron | 45.0% |
| GTAACAATTGTGGACACTCC+TGG | - | chr2_2:12760585-12760604 | Msa0238900:intron | 45.0% | |
| TCCTATCCGGAGAGAAACAA+AGG | - | chr2_2:12760610-12760629 | Msa0238900:intron | 45.0% | |
| ! | TCCTTTGTTTCTCTCCGGAT+AGG | + | chr2_2:12760614-12760633 | None:intergenic | 45.0% |
| TTCATCTTTACGAGGCAACG+AGG | - | chr2_2:12760752-12760771 | Msa0238900:intron | 45.0% | |
| !! | GAGTCTATGGAGCATTGATG+TGG | - | chr2_2:12760931-12760950 | Msa0238900:intron | 45.0% |
| ATGTATACACGCGCAACTTC+AGG | + | chr2_2:12760981-12761000 | None:intergenic | 45.0% | |
| GAAGTTGCGCGTGTATACAT+TGG | - | chr2_2:12760981-12761000 | Msa0238900:intron | 45.0% | |
| !! | GAAGGATTTGCTGATCCACT+AGG | - | chr2_2:12761281-12761300 | Msa0238900:intron | 45.0% |
| GAAGGAACAGAACGATCTGT+TGG | - | chr2_2:12761319-12761338 | Msa0238900:intron | 45.0% | |
| GACGATCACAAGCCTTCTTT+GGG | + | chr2_2:12761361-12761380 | None:intergenic | 45.0% | |
| CAAAGAAGGCTTGTGATCGT+CGG | - | chr2_2:12761360-12761379 | Msa0238900:intron | 45.0% | |
| AAAGAAGGCTTGTGATCGTC+GGG | - | chr2_2:12761361-12761380 | Msa0238900:intron | 45.0% | |
| GAAGGAGATGCCAACAATGA+TGG | - | chr2_2:12761540-12761559 | Msa0238900:intron | 45.0% | |
| !! | TTGGCTTTGCCCATCATTGT+TGG | + | chr2_2:12761553-12761572 | None:intergenic | 45.0% |
| !! | AACAATGATGGGCAAAGCCA+AGG | - | chr2_2:12761552-12761571 | Msa0238900:intron | 45.0% |
| !! | AGAGAGTATCATCTACCACC+TGG | - | chr2_2:12761775-12761794 | Msa0238900:intron | 45.0% |
| TCAACACTGGGAAAATCACC+AGG | + | chr2_2:12761796-12761815 | None:intergenic | 45.0% | |
| !! | TCTCTGAAGTGCTCAACACT+GGG | + | chr2_2:12761808-12761827 | None:intergenic | 45.0% |
| !! | TTCTCTGAAGTGCTCAACAC+TGG | + | chr2_2:12761809-12761828 | None:intergenic | 45.0% |
| CAAGCCATAGATGACATGCT+AGG | - | chr2_2:12761883-12761902 | Msa0238900:CDS | 45.0% | |
| !! | ATAAAATATAAATTGAAAAT+GGG | + | chr2_2:12756535-12756554 | None:intergenic | 5.0% |
| !!! | ATAATATAATTTTTAGTTTT+AGG | - | chr2_2:12759377-12759396 | Msa0238900:intron | 5.0% |
| !!! | TAATATAATTTTTAGTTTTA+GGG | - | chr2_2:12759378-12759397 | Msa0238900:intron | 5.0% |
| GATGGAGATGGACGAATCAG+TGG | - | chr2_2:12756376-12756395 | Msa0238900:three_prime_UTR | 50.0% | |
| AGGTAGAAACGGTTGAGGCT+TGG | + | chr2_2:12757619-12757638 | None:intergenic | 50.0% | |
| GCCACAAAAAGGCTCCAACT+AGG | + | chr2_2:12757737-12757756 | None:intergenic | 50.0% | |
| GATCTGAAGGAGAGAGACGA+TGG | - | chr2_2:12758660-12758679 | Msa0238900:CDS | 50.0% | |
| ATGGAGGAAGAGGAAGAGGA+AGG | - | chr2_2:12758679-12758698 | Msa0238900:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGGAGA+AGG | - | chr2_2:12758685-12758704 | Msa0238900:CDS | 50.0% | |
| GAAGAGGAAGGAGAAGGAAG+AGG | - | chr2_2:12758691-12758710 | Msa0238900:CDS | 50.0% | |
| GTGAAAGGCTCCTGTTGTAC+AGG | - | chr2_2:12758818-12758837 | Msa0238900:intron | 50.0% | |
| GAGCAGAAAGCCTGTACAAC+AGG | + | chr2_2:12758831-12758850 | None:intergenic | 50.0% | |
| CCTCAAAAATTGACGCGACG+CGG | + | chr2_2:12759442-12759461 | None:intergenic | 50.0% | |
| !! | CGTCGCGTCAATTTTTGAGG+TGG | - | chr2_2:12759442-12759461 | Msa0238900:intron | 50.0% |
| GTATCTCCGTTGCTGGTAAG+TGG | - | chr2_2:12759748-12759767 | Msa0238900:intron | 50.0% | |
| CCCGGAATACTCCTTTCATC+AGG | + | chr2_2:12760374-12760393 | None:intergenic | 50.0% | |
| !! | GGAGCATTGATGTGGTCGTT+AGG | - | chr2_2:12760939-12760958 | Msa0238900:intron | 50.0% |
| TGCGCGTGTATACATTGGGT+AGG | - | chr2_2:12760986-12761005 | Msa0238900:intron | 50.0% | |
| CGATCTGTTGGCAGATTTGC+TGG | - | chr2_2:12761331-12761350 | Msa0238900:intron | 50.0% | |
| CGACGATCACAAGCCTTCTT+TGG | + | chr2_2:12761362-12761381 | None:intergenic | 50.0% | |
| GTAGGCAAAAGTGAAGGTGG+AGG | + | chr2_2:12761628-12761647 | None:intergenic | 50.0% | |
| ACACTGGGAAAATCACCAGG+TGG | + | chr2_2:12761793-12761812 | None:intergenic | 50.0% | |
| !! | TTGGTGTCGCTTGCACAAGC+AGG | - | chr2_2:12756627-12756646 | Msa0238900:intron | 55.0% |
| ! | CTGACGCGGCTGTTCAGTTT+TGG | + | chr2_2:12758489-12758508 | None:intergenic | 55.0% |
| ATCGGAGAACTCGGGTTTCG+CGG | - | chr2_2:12758528-12758547 | Msa0238900:intron | 55.0% | |
| CTTTGACCCGCTACGCTACA+CGG | + | chr2_2:12758562-12758581 | None:intergenic | 55.0% | |
| !! | TGTAGCGTAGCGGGTCAAAG+CGG | - | chr2_2:12758562-12758581 | Msa0238900:intron | 55.0% |
| GGTCAAAGCGGCCGCTATTT+CGG | - | chr2_2:12758574-12758593 | Msa0238900:intron | 55.0% | |
| ! | GTCAAAGCGGCCGCTATTTC+GGG | - | chr2_2:12758575-12758594 | Msa0238900:intron | 55.0% |
| CTGAAGGAGAGAGACGATGG+AGG | - | chr2_2:12758663-12758682 | Msa0238900:CDS | 55.0% | |
| GAGAGAGACGATGGAGGAAG+AGG | - | chr2_2:12758669-12758688 | Msa0238900:CDS | 55.0% | |
| GACGATGGAGGAAGAGGAAG+AGG | - | chr2_2:12758675-12758694 | Msa0238900:CDS | 55.0% | |
| AATTGACGCGACGCGGTATG+CGG | + | chr2_2:12759435-12759454 | None:intergenic | 55.0% | |
| ! | CCGCGTCGCGTCAATTTTTG+AGG | - | chr2_2:12759439-12759458 | Msa0238900:intron | 55.0% |
| GACACTCCTGGTGTCCTATC+CGG | - | chr2_2:12760597-12760616 | Msa0238900:intron | 55.0% | |
| TTCTCTCCGGATAGGACACC+AGG | + | chr2_2:12760606-12760625 | None:intergenic | 55.0% | |
| CAACGAGGACAAGATCCGTG+TGG | - | chr2_2:12760767-12760786 | Msa0238900:intron | 55.0% | |
| AAGGCTTGTGATCGTCGGGT+AGG | - | chr2_2:12761365-12761384 | Msa0238900:intron | 55.0% | |
| AGTTCTCCGATAGCGCTGCG+CGG | + | chr2_2:12758519-12758538 | None:intergenic | 60.0% | |
| CGCAGCGCTATCGGAGAACT+CGG | - | chr2_2:12758519-12758538 | Msa0238900:intron | 60.0% | |
| GCAGCGCTATCGGAGAACTC+GGG | - | chr2_2:12758520-12758539 | Msa0238900:intron | 60.0% | |
| CGCTACGCTACACGGTTTCG+CGG | + | chr2_2:12758554-12758573 | None:intergenic | 60.0% | |
| CGCGAAACCGTGTAGCGTAG+CGG | - | chr2_2:12758552-12758571 | Msa0238900:intron | 60.0% | |
| GCGAAACCGTGTAGCGTAGC+GGG | - | chr2_2:12758553-12758572 | Msa0238900:intron | 60.0% | |
| GGCTTTCTGCTCCACAGCTG+TGG | - | chr2_2:12758839-12758858 | Msa0238900:intron | 60.0% | |
| GCGGGGGCTATTACATGACG+CGG | + | chr2_2:12759405-12759424 | None:intergenic | 60.0% | |
| ATTGACGCGACGCGGTATGC+GGG | + | chr2_2:12759434-12759453 | None:intergenic | 60.0% | |
| GTCAAAGCGGAAACGCGGCA+CGG | + | chr2_2:12759473-12759492 | None:intergenic | 60.0% | |
| GCGGCCGCGATTGACAACAG+AGG | + | chr2_2:12758439-12758458 | None:intergenic | 65.0% | |
| TTGTCAATCGCGGCCGCTCC+CGG | - | chr2_2:12758442-12758461 | Msa0238900:intron | 65.0% | |
| AGTGGAGTGGGCCACAGCTG+TGG | + | chr2_2:12758853-12758872 | None:intergenic | 65.0% | |
| TGCGCGGTGGCGTTCTGACG+CGG | + | chr2_2:12758503-12758522 | None:intergenic | 70.0% | |
| ACGCCACCGCGCAGCGCTAT+CGG | - | chr2_2:12758510-12758529 | Msa0238900:intron | 70.0% | |
| TCTCCGATAGCGCTGCGCGG+TGG | + | chr2_2:12758516-12758535 | None:intergenic | 70.0% | |
| GGTATGCGGGCGCGTAGCGG+GGG | + | chr2_2:12759421-12759440 | None:intergenic | 75.0% | |
| CGGTATGCGGGCGCGTAGCG+GGG | + | chr2_2:12759422-12759441 | None:intergenic | 75.0% | |
| GCGGTATGCGGGCGCGTAGC+GGG | + | chr2_2:12759423-12759442 | None:intergenic | 75.0% | |
| CGCGGTATGCGGGCGCGTAG+CGG | + | chr2_2:12759424-12759443 | None:intergenic | 75.0% | |
| AGCGGAAACGCGGCACGGCG+CGG | + | chr2_2:12759468-12759487 | None:intergenic | 75.0% | |
| ! | GGCCGCTCCCGGCGCTATCG+CGG | - | chr2_2:12758453-12758472 | Msa0238900:intron | 80.0% |
| !! | CGCCGCGATAGCGCCGGGAG+CGG | + | chr2_2:12758458-12758477 | None:intergenic | 80.0% |
| ! | CTCCCGGCGCTATCGCGGCG+CGG | - | chr2_2:12758458-12758477 | Msa0238900:intron | 80.0% |
| ! | CTCCGCGCCGCGATAGCGCC+GGG | + | chr2_2:12758463-12758482 | None:intergenic | 80.0% |
| ! | GCTCCGCGCCGCGATAGCGC+CGG | + | chr2_2:12758464-12758483 | None:intergenic | 80.0% |
| ! | GGCGCTATCGCGGCGCGGAG+CGG | - | chr2_2:12758463-12758482 | Msa0238900:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 12756178 | 12762183 | 12756178 | ID=Msa0238900;Name=Msa0238900 |
| chr2_2 | mRNA | 12756178 | 12762183 | 12756178 | ID=Msa0238900-mRNA-1;Parent=Msa0238900;Name=Msa0238900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=46|0.92|0.93|1|0.92|0.93|15|229|528 |
| chr2_2 | exon | 12756178 | 12756592 | 12756178 | ID=Msa0238900-mRNA-1:exon:5420;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12756743 | 12756886 | 12756743 | ID=Msa0238900-mRNA-1:exon:5419;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12756979 | 12757105 | 12756979 | ID=Msa0238900-mRNA-1:exon:5418;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12757358 | 12757437 | 12757358 | ID=Msa0238900-mRNA-1:exon:5417;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12757537 | 12757788 | 12757537 | ID=Msa0238900-mRNA-1:exon:5416;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12757868 | 12757996 | 12757868 | ID=Msa0238900-mRNA-1:exon:5415;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12758183 | 12758232 | 12758183 | ID=Msa0238900-mRNA-1:exon:5414;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12758357 | 12758459 | 12758357 | ID=Msa0238900-mRNA-1:exon:5413;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12758599 | 12758712 | 12758599 | ID=Msa0238900-mRNA-1:exon:5412;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12760690 | 12760751 | 12760690 | ID=Msa0238900-mRNA-1:exon:5411;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12760842 | 12760884 | 12760842 | ID=Msa0238900-mRNA-1:exon:5410;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12760998 | 12761017 | 12760998 | ID=Msa0238900-mRNA-1:exon:5409;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12761677 | 12761734 | 12761677 | ID=Msa0238900-mRNA-1:exon:5408;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12761836 | 12761984 | 12761836 | ID=Msa0238900-mRNA-1:exon:5407;Parent=Msa0238900-mRNA-1 |
| chr2_2 | exon | 12762068 | 12762183 | 12762068 | ID=Msa0238900-mRNA-1:exon:5406;Parent=Msa0238900-mRNA-1 |
| chr2_2 | five_prime_UTR | 12762138 | 12762183 | 12762138 | ID=Msa0238900-mRNA-1:five_prime_utr;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12762068 | 12762137 | 12762068 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12761836 | 12761984 | 12761836 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12761677 | 12761734 | 12761677 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12760998 | 12761017 | 12760998 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12760842 | 12760884 | 12760842 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12760690 | 12760751 | 12760690 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12758599 | 12758712 | 12758599 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12758357 | 12758459 | 12758357 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12758183 | 12758232 | 12758183 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12757868 | 12757996 | 12757868 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12757537 | 12757788 | 12757537 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12757358 | 12757437 | 12757358 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12756979 | 12757105 | 12756979 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12756743 | 12756886 | 12756743 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | CDS | 12756407 | 12756592 | 12756407 | ID=Msa0238900-mRNA-1:cds;Parent=Msa0238900-mRNA-1 |
| chr2_2 | three_prime_UTR | 12756178 | 12756406 | 12756178 | ID=Msa0238900-mRNA-1:three_prime_utr;Parent=Msa0238900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
