AlfalfaGEDB | Msa0143670

M. sativa cultivar zhongmu-4 / Msa0143670

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0143670	XP_003609029.1	93.112	392	27	0	1	392	1	392	0.0	700

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0143670	G7JQV9	93.112	392	27	0	1	392	1	392	0.0	700

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0143670	0.813947	1.977772e-51	-8.615850e-47
Msa0005020	Msa0143670	0.818823	1.603104e-52	-8.615850e-47
Msa0015150	Msa0143670	0.810274	1.250323e-50	-8.615850e-47
Msa0015570	Msa0143670	0.807981	3.875548e-50	-8.615850e-47
Msa0016040	Msa0143670	0.842718	2.178975e-58	-8.615850e-47
Msa0019930	Msa0143670	0.837910	3.933267e-57	-8.615850e-47
Msa0020540	Msa0143670	0.811459	6.928907e-51	-8.615850e-47
Msa0025160	Msa0143670	0.850177	2.009857e-60	-8.615850e-47
Msa0025580	Msa0143670	0.805748	1.149019e-49	-8.615850e-47
Msa0027280	Msa0143670	0.829649	4.573470e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0143670	MtrunA17_Chr4g0060361	93.112	392	27	0	1	392	1	392	0.0	700
Msa0143670	MtrunA17_Chr4g0029591	49.180	61	31	0	130	190	159	219	8.53e-13	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0143670	AT5G62550.1	46.275	255	112	9	1	242	5	247	1.32e-43	158

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Find 83 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCAGAGACCGGCGTT+CGG	0.394436	1_4:+2659845	None:intergenic
AACCATAGAGTCACCCAAAA+AGG	0.356976	1_4:-2659017	Msa0143670:CDS
AAGAGTGGGGTCAAGAAATA+TGG	0.315516	1_4:-2658851	Msa0143670:CDS
AAGCTTGAAACCAATAAGAG+TGG	0.600197	1_4:-2658866	Msa0143670:CDS
AATACCAGAAACATCAACAG+AGG	0.698470	1_4:+2661067	None:intergenic
AATCAAGGGCACCTACACTT+TGG	0.520785	1_4:+2660031	None:intergenic
AATCTCAGAGACCGGCGTTC+GGG	0.362228	1_4:+2659846	None:intergenic
ACAGGATTAGAGAGCCTTCT+TGG	0.325025	1_4:+2659973	None:intergenic
ACCTACACTTTGGCTTACAT+TGG	0.542241	1_4:+2660041	None:intergenic
ACTCCGAGTCCAAAGGCGGT+TGG	0.613714	1_4:-2659937	Msa0143670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACACAAAAAACCAACTT+TGG	-	chr1_4:2658313-2658332	Msa0143670:three_prime_UTR	30.0%
AGAGAAACTAATTCCAAAGT+TGG	+	chr1_4:2658329-2658348	None:intergenic	30.0%
ACTCAGATTGTTTGAATTTG+TGG	-	chr1_4:2658698-2658717	Msa0143670:CDS	30.0%
CTCAGATTGTTTGAATTTGT+GGG	-	chr1_4:2658699-2658718	Msa0143670:CDS	30.0%
TCAGATTGTTTGAATTTGTG+GGG	-	chr1_4:2658700-2658719	Msa0143670:CDS	30.0%
AACTGAAAATTCATGCAAGA+AGG	-	chr1_4:2658849-2658868	Msa0143670:CDS	30.0%
TCATGCAAGAAGGATAATAT+TGG	-	chr1_4:2658859-2658878	Msa0143670:CDS	30.0%
GCCAATATATGTATACATGT+TGG	+	chr1_4:2659097-2659116	None:intergenic	30.0%
ACAAAGACTTATCGATCTTA+AGG	+	chr1_4:2659187-2659206	None:intergenic	30.0%
TAAGTCTTGCATAATGCAAA+TGG	+	chr1_4:2659246-2659265	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	2658262	2661210	2658262	ID=Msa0143670;Name=Msa0143670
chr1_4	mRNA	2658262	2661210	2658262	ID=Msa0143670-mRNA-1;Parent=Msa0143670;Name=Msa0143670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=105\|1\|1\|1\|0.83\|0.71\|7\|255\|392
chr1_4	exon	2658262	2658333	2658262	ID=Msa0143670-mRNA-1:exon:1186;Parent=Msa0143670-mRNA-1
chr1_4	exon	2658363	2658587	2658363	ID=Msa0143670-mRNA-1:exon:1185;Parent=Msa0143670-mRNA-1
chr1_4	exon	2658690	2658733	2658690	ID=Msa0143670-mRNA-1:exon:1184;Parent=Msa0143670-mRNA-1
chr1_4	exon	2658828	2659398	2658828	ID=Msa0143670-mRNA-1:exon:1183;Parent=Msa0143670-mRNA-1
chr1_4	exon	2659705	2660077	2659705	ID=Msa0143670-mRNA-1:exon:1182;Parent=Msa0143670-mRNA-1
chr1_4	exon	2660861	2660975	2660861	ID=Msa0143670-mRNA-1:exon:1181;Parent=Msa0143670-mRNA-1
chr1_4	exon	2661072	2661210	2661072	ID=Msa0143670-mRNA-1:exon:1180;Parent=Msa0143670-mRNA-1
chr1_4	five_prime_UTR	2661106	2661210	2661106	ID=Msa0143670-mRNA-1:five_prime_utr;Parent=Msa0143670-mRNA-1
chr1_4	CDS	2661072	2661105	2661072	ID=Msa0143670-mRNA-1:cds;Parent=Msa0143670-mRNA-1
chr1_4	CDS	2660861	2660975	2660861	ID=Msa0143670-mRNA-1:cds;Parent=Msa0143670-mRNA-1
chr1_4	CDS	2659705	2660077	2659705	ID=Msa0143670-mRNA-1:cds;Parent=Msa0143670-mRNA-1
chr1_4	CDS	2658828	2659398	2658828	ID=Msa0143670-mRNA-1:cds;Parent=Msa0143670-mRNA-1
chr1_4	CDS	2658690	2658733	2658690	ID=Msa0143670-mRNA-1:cds;Parent=Msa0143670-mRNA-1
chr1_4	CDS	2658546	2658587	2658546	ID=Msa0143670-mRNA-1:cds;Parent=Msa0143670-mRNA-1
chr1_4	three_prime_UTR	2658363	2658545	2658363	ID=Msa0143670-mRNA-1:three_prime_utr;Parent=Msa0143670-mRNA-1
chr1_4	three_prime_UTR	2658262	2658333	2658262	ID=Msa0143670-mRNA-1:three_prime_utr;Parent=Msa0143670-mRNA-1

Gene Sequence

>Msa0143670

ATGGAAGAACAACAATCCTCTGTTGATGTTTCTGGGAACTCTGCTTCTGCGAAACCAAAACTTCAAAGATATCCACTGCGTTCGGCTTCTAGATCCAAGGAACAGAAGCCAGATGCACCTGTTAGCACCAATGCTTCTCAATCTAAGAGAGGAAGAAGTACTGCCAATGTAAGCCAAAGTGTAGGTGCCCTTGATTTCTCTGGCAAGGACAGATCTTCAAGTGCTAAACCACCAAGAAGGCTCTCTAATCCTGTCAAATCATCTACAACTCCGAGTCCAAAGGCGGTTGGCAACATAACCCCAATCTCTGAGACAAGATCAAGGAGGTCTGGAAATAGCCAAGAGCCTCAAACCAGAACCCGAACGCCGGTCTCTGAGATTTTCAGATCATCTACTAAAATGAAGTTTAGTCTCTTGTCTTCAGCTTCATATTGGTTAAGCCAAATCAAGCTCTCTGAAAATGTTGAAAAGCACAACATTTCACTTGGATTCTTCAAACTAGCCTTGGAGGCAGGATGTGAGCCCTTCCAGAAATTACAAGACGAGCTGAAGTGTTACTTGCTCCGACACCAACAAAAACTTACTGAACTTGGAGAACAAGTGAAAGTACTGGTAGAAAGCTATAACATTGCAGAAGTCATAGAGCAGTCTCAAGTTTCTGAGAGTATTTCACAGATGCCAGAAGAGGAAACTCGTTCGTCTGATGATGAAGGCAACTTCAGCACTTCTTCTACCATGGCTACTGGTAAACTGACCCCCAAGTGCTTAAACACTGCCTCTATTCAAGTCATTTCTCCTGTTAAAGCCATAGAGTCGCCCAAAAAGGAAATTAGCCAAAAGAAAAATCTCACTGCCTCTATTCAAGTCACTTCTCCTGGTAAAACCATAGAGTCACCCAAAAAGGAAACTAGCCAAAAGAAAAATCTTGGAACCAAGTTGAGAGAAAATCTCAGAATGAACTCTGCAATTTCAAAATCTGCTTCTGGTAGTTTGAACCGTAGTAGGTCAGTTAAAAAGTCAGATAAGCCAAGCAAGCTTGAAACCAATAAGAGTGGGGTCAAGAAATATGGAAGGAAAGCTGATGCTAAAGAAGTTTCTGTTAGTCCTATTACAAGTGCTGAAGAAAAAGAAAATATGGATGTTCGGTCCACTGATGATGATTTGATTGAAGTCATGTAA

Protein sequence

>Msa0143670

MEEQQSSVDVSGNSASAKPKLQRYPLRSASRSKEQKPDAPVSTNASQSKRGRSTANVSQSVGALDFSGKDRSSSAKPPRRLSNPVKSSTTPSPKAVGNITPISETRSRRSGNSQEPQTRTRTPVSEIFRSSTKMKFSLLSSASYWLSQIKLSENVEKHNISLGFFKLALEAGCEPFQKLQDELKCYLLRHQQKLTELGEQVKVLVESYNIAEVIEQSQVSESISQMPEEETRSSDDEGNFSTSSTMATGKLTPKCLNTASIQVISPVKAIESPKKEISQKKNLTASIQVTSPGKTIESPKKETSQKKNLGTKLRENLRMNSAISKSASGSLNRSRSVKKSDKPSKLETNKSGVKKYGRKADAKEVSVSPITSAEEKENMDVRSTDDDLIEVM*