AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580810 MtrunA17_Chr4g0060361 93.112 392 27 0 1 392 1 392 0.0 700
Msa0580810 MtrunA17_Chr4g0029591 49.180 61 31 0 130 190 159 219 8.53e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580810 AT5G62550.1 46.275 255 112 9 1 242 5 247 1.32e-43 158

Find 83 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCTCTGTTGATGTTTC+TGG 0.141767 4_1:+86075670 Msa0580810:CDS
TACTTTATACTCTATATATT+TGG 0.173245 4_1:+86078365 Msa0580810:three_prime_UTR
TCAGCTCGTCTTGTAATTTC+TGG 0.205275 4_1:-86077370 None:intergenic
TTTCTTGACCCCACTCTTAT+TGG 0.213637 4_1:-86077885 None:intergenic
CTTGATCTTGTCTCAGAGAT+TGG 0.260994 4_1:-86076837 None:intergenic
AGTGGATATCTTTGAAGTTT+TGG 0.266285 4_1:-86075808 None:intergenic
GACGAACGAGTTTCCTCTTC+TGG 0.269058 4_1:-86077521 None:intergenic
TGCATCTGGCTTCTGTTCCT+TGG 0.298826 4_1:-86075848 None:intergenic
TTGATCTTGTCTCAGAGATT+GGG 0.302498 4_1:-86076836 None:intergenic
AAGAGTGGGGTCAAGAAATA+TGG 0.315516 4_1:+86077890 Msa0580810:CDS
ACAGGATTAGAGAGCCTTCT+TGG 0.325025 4_1:-86076768 None:intergenic
GCAATTTCAAAATCTGCTTC+TGG 0.340732 4_1:+86077806 Msa0580810:CDS
TCTTCTTGTATTGAATGTTA+TGG 0.347529 4_1:+86078327 Msa0580810:three_prime_UTR
AGAGACCGGCGTTCGGGTTC+TGG 0.355366 4_1:-86076889 None:intergenic
GGCGACTCTATGGCTTTAAC+AGG 0.355728 4_1:-86077638 None:intergenic
AACCATAGAGTCACCCAAAA+AGG 0.356976 4_1:+86077724 Msa0580810:CDS
AATCTCAGAGACCGGCGTTC+GGG 0.362228 4_1:-86076895 None:intergenic
AGCCATAGAGTCGCCCAAAA+AGG 0.383256 4_1:+86077646 Msa0580810:CDS
AAATCTCAGAGACCGGCGTT+CGG 0.394436 4_1:-86076896 None:intergenic
GTTATGTTGCCAACCGCCTT+TGG 0.396563 4_1:-86076813 None:intergenic
TGTCATTCTGAAACTTTGTT+TGG 0.399717 4_1:+86078238 Msa0580810:three_prime_UTR
TGAGAAGCATTGGTGCTAAC+AGG 0.401430 4_1:-86075871 None:intergenic
TTATTGGTTTCAAGCTTGCT+TGG 0.407131 4_1:-86077869 None:intergenic
AGAGAAACTAATTCCAAAGT+TGG 0.410613 4_1:-86075617 None:intergenic
TCTTGTCTTCAGCTTCATAT+TGG 0.418460 4_1:+86076949 Msa0580810:CDS
GGGTTCTGGTTTGAGGCTCT+TGG 0.425515 4_1:-86076875 None:intergenic
TTGGTGCTAACAGGTGCATC+TGG 0.433704 4_1:-86075862 None:intergenic
GAGACAAGATCAAGGAGGTC+TGG 0.434478 4_1:+86076846 Msa0580810:CDS
TGGATTCTTCAAACTAGCCT+TGG 0.435742 4_1:+86077022 Msa0580810:CDS
TTGCCAACCGCCTTTGGACT+CGG 0.440988 4_1:-86076807 None:intergenic
GTAGGTGCCCTTGATTTCTC+TGG 0.448973 4_1:+86076717 Msa0580810:CDS
GGCGTTCGGGTTCTGGTTTG+AGG 0.450929 4_1:-86076882 None:intergenic
TCAAAGATATCCACTGCGTT+CGG 0.452607 4_1:+86075816 Msa0580810:CDS
AGAGGCAGTGTTTAAGCACT+TGG 0.461037 4_1:-86077600 None:intergenic
CCTCTTAGATTGAGAAGCAT+TGG 0.480180 4_1:-86075881 None:intergenic
TTCAAACTAGCCTTGGAGGC+AGG 0.481991 4_1:+86077029 Msa0580810:CDS
TGTCCTTGCCAGAGAAATCA+AGG 0.493273 4_1:-86076725 None:intergenic
GAGGCAGTGTTTAAGCACTT+GGG 0.497338 4_1:-86077599 None:intergenic
CTGGTAGTTTGAACCGTAGT+AGG 0.501816 4_1:+86077825 Msa0580810:CDS
ATTCTTCAAACTAGCCTTGG+AGG 0.505138 4_1:+86077025 Msa0580810:CDS
CCAATGCTTCTCAATCTAAG+AGG 0.511758 4_1:+86075881 Msa0580810:CDS
CTCGTCTTGTAATTTCTGGA+AGG 0.512731 4_1:-86077366 None:intergenic
TGATCTTGTCTCAGAGATTG+GGG 0.514449 4_1:-86076835 None:intergenic
AATCAAGGGCACCTACACTT+TGG 0.520785 4_1:-86076710 None:intergenic
TGCCCTTGATTTCTCTGGCA+AGG 0.521077 4_1:+86076722 Msa0580810:CDS
TACCTCACATCCTGCCTCCA+AGG 0.524168 4_1:-86077039 None:intergenic
TCTATTCAAGTCACTTCTCC+TGG 0.527263 4_1:+86077698 Msa0580810:CDS
AGGAGAAGTGACTTGAATAG+AGG 0.535527 4_1:-86077696 None:intergenic
TCGTCTTGTAATTTCTGGAA+GGG 0.535594 4_1:-86077365 None:intergenic
AGGAGAAATGACTTGAATAG+AGG 0.536982 4_1:-86077618 None:intergenic
GGAGTTGTAGATGATTTGAC+AGG 0.537947 4_1:-86076786 None:intergenic
ACTTCTTCTACCATGGCTAC+TGG 0.540510 4_1:+86077566 Msa0580810:CDS
CTTCAGCACTTCTTCTACCA+TGG 0.540835 4_1:+86077559 Msa0580810:CDS
ACCTACACTTTGGCTTACAT+TGG 0.542241 4_1:-86076700 None:intergenic
GAAAAGCACAACATTTCACT+TGG 0.547280 4_1:+86077002 Msa0580810:CDS
AGCTTGAAACCAATAAGAGT+GGG 0.548716 4_1:+86077876 Msa0580810:CDS
AGGCAGTGTTTAAGCACTTG+GGG 0.559218 4_1:-86077598 None:intergenic
TGGAGAACAAGTGAAAGTAC+TGG 0.572339 4_1:+86077433 Msa0580810:CDS
GGATTAGAGAGCCTTCTTGG+TGG 0.579620 4_1:-86076765 None:intergenic
ACTCGTTCGTCTGATGATGA+AGG 0.582042 4_1:+86077533 Msa0580810:CDS
TTCAATCAAATCATCATCAG+TGG 0.585107 4_1:-86078186 None:intergenic
AGGAAAGCTGATGCTAAAGA+AGG 0.586233 4_1:+86077914 Msa0580810:CDS
CAATCTCTGAGACAAGATCA+AGG 0.592779 4_1:+86076838 Msa0580810:CDS
GATCTGAAAATCTCAGAGAC+CGG 0.593480 4_1:-86076903 None:intergenic
TATTTCACAGATGCCAGAAG+AGG 0.595376 4_1:+86077508 Msa0580810:CDS
AAGCTTGAAACCAATAAGAG+TGG 0.600197 4_1:+86077875 Msa0580810:CDS
GGTCAGTTTACCAGTAGCCA+TGG 0.603404 4_1:-86077576 None:intergenic
ACTCCGAGTCCAAAGGCGGT+TGG 0.613714 4_1:+86076804 Msa0580810:CDS
AGCCTTGGAGGCAGGATGTG+AGG 0.616507 4_1:+86077037 Msa0580810:CDS
ATCTACAACTCCGAGTCCAA+AGG 0.621399 4_1:+86076797 Msa0580810:CDS
TGTGTATAATATTCTGTGTG+TGG 0.624819 4_1:+86078262 Msa0580810:three_prime_UTR
CAAGTGCTAAACCACCAAGA+AGG 0.625854 4_1:+86076754 Msa0580810:CDS
GATCTAGAAGCCGAACGCAG+TGG 0.627660 4_1:-86075826 None:intergenic
GCGTTCGGCTTCTAGATCCA+AGG 0.635836 4_1:+86075831 Msa0580810:CDS
GTGGGGTCAAGAAATATGGA+AGG 0.640207 4_1:+86077894 Msa0580810:CDS
TCAAACCAGAACCCGAACGC+CGG 0.647853 4_1:+86076884 Msa0580810:CDS
GGCAGTGTTTAAGCACTTGG+GGG 0.661328 4_1:-86077597 None:intergenic
TACAACTCCGAGTCCAAAGG+CGG 0.670021 4_1:+86076800 Msa0580810:CDS
GTCCTTGCCAGAGAAATCAA+GGG 0.679822 4_1:-86076724 None:intergenic
GCCAATGTAAGCCAAAGTGT+AGG 0.695393 4_1:+86076699 Msa0580810:CDS
AATACCAGAAACATCAACAG+AGG 0.698470 4_1:-86075674 None:intergenic
GCTTGAAACCAATAAGAGTG+GGG 0.706638 4_1:+86077877 Msa0580810:CDS
TCTCTGAGACAAGATCAAGG+AGG 0.818846 4_1:+86076841 Msa0580810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTCTTTTCTTTTTTA+AGG + chr4_1:86078450-86078469 Msa0580810:three_prime_UTR 10.0%
!! AACAATCAATTAATTGAAAA+AGG - chr4_1:86075718-86075737 None:intergenic 15.0%
!! TACTTTATACTCTATATATT+TGG + chr4_1:86078365-86078384 Msa0580810:three_prime_UTR 15.0%
!!! TATATTTGGTTTTATTATAG+TGG + chr4_1:86078379-86078398 Msa0580810:three_prime_UTR 15.0%
!!! TAGAGAATTATAGTTTTGTT+TGG + chr4_1:86075950-86075969 Msa0580810:intron 20.0%
!! TGAAGTTAATTTCAAAACAT+TGG + chr4_1:86076027-86076046 Msa0580810:intron 20.0%
!! TTATTATGTTGAAAATCGAA+GGG - chr4_1:86076104-86076123 None:intergenic 20.0%
!! TTTATTATGTTGAAAATCGA+AGG - chr4_1:86076105-86076124 None:intergenic 20.0%
!! AATCTAAAAATAAGAGCTTT+AGG + chr4_1:86076293-86076312 Msa0580810:intron 20.0%
!! TTCATATATAACTAAGGTTA+TGG - chr4_1:86076573-86076592 None:intergenic 20.0%
!!! TCAGTTTTCATATATAACTA+AGG - chr4_1:86076579-86076598 None:intergenic 20.0%
!!! AATCTAATTTACATTTTCAG+AGG + chr4_1:86076666-86076685 Msa0580810:intron 20.0%
!! ATGACAAAATTGAAATAAAC+AGG - chr4_1:86077088-86077107 None:intergenic 20.0%
!!! AATTTTAAAACTTGCTAAGT+AGG - chr4_1:86077131-86077150 None:intergenic 20.0%
!!! TATTGTGATTTTTGATATTG+TGG + chr4_1:86077158-86077177 Msa0580810:intron 20.0%
!!! ACTGTTTTTTTTTTCCTTTC+AGG + chr4_1:86075766-86075785 Msa0580810:intron 25.0%
!!! CTGTTTTTTTTTTCCTTTCA+GGG + chr4_1:86075767-86075786 Msa0580810:intron 25.0%
! GTGTATAATGTAATTAACGT+TGG - chr4_1:86076077-86076096 None:intergenic 25.0%
! ATTCCTTAACATGTATCTTT+AGG - chr4_1:86076276-86076295 None:intergenic 25.0%
! ACCAACATGTATACATATAT+TGG + chr4_1:86076384-86076403 Msa0580810:intron 25.0%
! GTTCACATTAAACAAACTAA+AGG - chr4_1:86076416-86076435 None:intergenic 25.0%
!!! AAACTGAGTGAATACTTTTT+AGG + chr4_1:86076592-86076611 Msa0580810:intron 25.0%
!!! AACTGAGTGAATACTTTTTA+GGG + chr4_1:86076593-86076612 Msa0580810:intron 25.0%
! ATAAACAGGAATGAATTGAT+TGG - chr4_1:86077074-86077093 None:intergenic 25.0%
! TGCAATCAAAGTTTATCAAT+TGG - chr4_1:86077200-86077219 None:intergenic 25.0%
! AAATCACATATATACATGAG+TGG + chr4_1:86077245-86077264 Msa0580810:intron 25.0%
!!! TAATCAAGTCGTCTTTTTTA+TGG + chr4_1:86077319-86077338 Msa0580810:intron 25.0%
!!! TTTTGGCTAATTTCCTTTTT+GGG - chr4_1:86077662-86077681 None:intergenic 25.0%
! TGCTGAAGAAAAAGAAAATA+TGG + chr4_1:86078052-86078071 Msa0580810:CDS 25.0%
! GAAAAAGAAAATATGGTAAG+TGG + chr4_1:86078059-86078078 Msa0580810:intron 25.0%
! AGAATATATGTCTGATATGT+TGG + chr4_1:86078140-86078159 Msa0580810:intron 25.0%
! TCTTCTTGTATTGAATGTTA+TGG + chr4_1:86078327-86078346 Msa0580810:three_prime_UTR 25.0%
CTAACACAAAAAACCAACTT+TGG + chr4_1:86075604-86075623 Msa0580810:five_prime_UTR 30.0%
AGAGAAACTAATTCCAAAGT+TGG - chr4_1:86075620-86075639 None:intergenic 30.0%
!!! AGTGGATATCTTTGAAGTTT+TGG - chr4_1:86075811-86075830 None:intergenic 30.0%
ACTCAGATTGTTTGAATTTG+TGG + chr4_1:86075989-86076008 Msa0580810:intron 30.0%
CTCAGATTGTTTGAATTTGT+GGG + chr4_1:86075990-86076009 Msa0580810:intron 30.0%
TCAGATTGTTTGAATTTGTG+GGG + chr4_1:86075991-86076010 Msa0580810:intron 30.0%
AACTGAAAATTCATGCAAGA+AGG + chr4_1:86076140-86076159 Msa0580810:intron 30.0%
TCATGCAAGAAGGATAATAT+TGG + chr4_1:86076150-86076169 Msa0580810:intron 30.0%
GCCAATATATGTATACATGT+TGG - chr4_1:86076388-86076407 None:intergenic 30.0%
ACAAAGACTTATCGATCTTA+AGG - chr4_1:86076478-86076497 None:intergenic 30.0%
TAAGTCTTGCATAATGCAAA+TGG - chr4_1:86076537-86076556 None:intergenic 30.0%
TGTACTCTACTTCAATTCAA+GGG - chr4_1:86076637-86076656 None:intergenic 30.0%
TTGTACTCTACTTCAATTCA+AGG - chr4_1:86076638-86076657 None:intergenic 30.0%
! CAAGTTCAGTAAGTTTTTGT+TGG - chr4_1:86077415-86077434 None:intergenic 30.0%
CAACAAAAACTTACTGAACT+TGG + chr4_1:86077413-86077432 Msa0580810:CDS 30.0%
!! CTTTTGGCTAATTTCCTTTT+TGG - chr4_1:86077663-86077682 None:intergenic 30.0%
!!! TTTTGGCTAGTTTCCTTTTT+GGG - chr4_1:86077740-86077759 None:intergenic 30.0%
ACTAGCCAAAAGAAAAATCT+TGG + chr4_1:86077749-86077768 Msa0580810:CDS 30.0%
! TGGTTCCAAGATTTTTCTTT+TGG - chr4_1:86077757-86077776 None:intergenic 30.0%
!! ACTTTTTAACTGACCTACTA+CGG - chr4_1:86077841-86077860 None:intergenic 30.0%
! TTGTCTAAAATCTAATGCCT+TGG + chr4_1:86077980-86077999 Msa0580810:intron 30.0%
! TTTTCTTCAGCACTTGTAAT+AGG - chr4_1:86078044-86078063 None:intergenic 30.0%
!!! ATATGTTGGTTTTGTCTTGT+AGG + chr4_1:86078154-86078173 Msa0580810:intron 30.0%
TTCAATCAAATCATCATCAG+TGG - chr4_1:86078189-86078208 None:intergenic 30.0%
!! TGTCATTCTGAAACTTTGTT+TGG + chr4_1:86078238-86078257 Msa0580810:three_prime_UTR 30.0%
TGTGTATAATATTCTGTGTG+TGG + chr4_1:86078262-86078281 Msa0580810:three_prime_UTR 30.0%
TCATTCTTCACCAAAAACGA+TGG + chr4_1:86075639-86075658 Msa0580810:exon 35.0%
! TGTTGTTCTTCCATCGTTTT+TGG - chr4_1:86075652-86075671 None:intergenic 35.0%
AATACCAGAAACATCAACAG+AGG - chr4_1:86075677-86075696 None:intergenic 35.0%
GTGCCTAAAGATACATGTTA+AGG + chr4_1:86076270-86076289 Msa0580810:intron 35.0%
TTGATCTTGTCTCAGAGATT+GGG - chr4_1:86076839-86076858 None:intergenic 35.0%
TCTTGTCTTCAGCTTCATAT+TGG + chr4_1:86076949-86076968 Msa0580810:CDS 35.0%
! CATTTTCAGAGAGCTTGATT+TGG - chr4_1:86076980-86076999 None:intergenic 35.0%
! GAAAAGCACAACATTTCACT+TGG + chr4_1:86077002-86077021 Msa0580810:CDS 35.0%
! AGACGACTTGATTAGTTCAT+GGG - chr4_1:86077313-86077332 None:intergenic 35.0%
! AAGACGACTTGATTAGTTCA+TGG - chr4_1:86077314-86077333 None:intergenic 35.0%
! TCGTCTTGTAATTTCTGGAA+GGG - chr4_1:86077368-86077387 None:intergenic 35.0%
! CAGTAAGTTTTTGTTGGTGT+CGG - chr4_1:86077409-86077428 None:intergenic 35.0%
AGGAGAAATGACTTGAATAG+AGG - chr4_1:86077621-86077640 None:intergenic 35.0%
! AGGCAGTGAGATTTTTCTTT+TGG - chr4_1:86077679-86077698 None:intergenic 35.0%
!!! CTTTTGGCTAGTTTCCTTTT+TGG - chr4_1:86077741-86077760 None:intergenic 35.0%
!! TCTGAGATTTTCTCTCAACT+TGG - chr4_1:86077777-86077796 None:intergenic 35.0%
GCAATTTCAAAATCTGCTTC+TGG + chr4_1:86077806-86077825 Msa0580810:CDS 35.0%
!! TTATTGGTTTCAAGCTTGCT+TGG - chr4_1:86077872-86077891 None:intergenic 35.0%
AAGCTTGAAACCAATAAGAG+TGG + chr4_1:86077875-86077894 Msa0580810:CDS 35.0%
AGCTTGAAACCAATAAGAGT+GGG + chr4_1:86077876-86077895 Msa0580810:CDS 35.0%
AGCAAAAAGTAACAACACCA+AGG - chr4_1:86078000-86078019 None:intergenic 35.0%
! GTTTTGTCTTGTAGGATGTT+CGG + chr4_1:86078162-86078181 Msa0580810:intron 35.0%
!! GGAGTTTGCTTGATCTTTTT+AGG + chr4_1:86078283-86078302 Msa0580810:three_prime_UTR 35.0%
!!! GGTTTTATTATAGTGGTCTG+TGG + chr4_1:86078386-86078405 Msa0580810:intron 35.0%
CAATCCTCTGTTGATGTTTC+TGG + chr4_1:86075670-86075689 Msa0580810:CDS 40.0%
TCAAAGATATCCACTGCGTT+CGG + chr4_1:86075816-86075835 Msa0580810:CDS 40.0%
! CCTCTTAGATTGAGAAGCAT+TGG - chr4_1:86075884-86075903 None:intergenic 40.0%
CCAATGCTTCTCAATCTAAG+AGG + chr4_1:86075881-86075900 Msa0580810:CDS 40.0%
! ACCTACACTTTGGCTTACAT+TGG - chr4_1:86076703-86076722 None:intergenic 40.0%
GGAGTTGTAGATGATTTGAC+AGG - chr4_1:86076789-86076808 None:intergenic 40.0%
TGATCTTGTCTCAGAGATTG+GGG - chr4_1:86076838-86076857 None:intergenic 40.0%
CTTGATCTTGTCTCAGAGAT+TGG - chr4_1:86076840-86076859 None:intergenic 40.0%
!! CAATCTCTGAGACAAGATCA+AGG + chr4_1:86076838-86076857 Msa0580810:CDS 40.0%
GATCTGAAAATCTCAGAGAC+CGG - chr4_1:86076906-86076925 None:intergenic 40.0%
! TGGATTCTTCAAACTAGCCT+TGG + chr4_1:86077022-86077041 Msa0580810:CDS 40.0%
!! ATTCTTCAAACTAGCCTTGG+AGG + chr4_1:86077025-86077044 Msa0580810:CDS 40.0%
TGCAATCGCATCATGATCTT+TGG + chr4_1:86077216-86077235 Msa0580810:intron 40.0%
! CTCGTCTTGTAATTTCTGGA+AGG - chr4_1:86077369-86077388 None:intergenic 40.0%
TCAGCTCGTCTTGTAATTTC+TGG - chr4_1:86077373-86077392 None:intergenic 40.0%
! TGGAGAACAAGTGAAAGTAC+TGG + chr4_1:86077433-86077452 Msa0580810:CDS 40.0%
TATTTCACAGATGCCAGAAG+AGG + chr4_1:86077508-86077527 Msa0580810:CDS 40.0%
AGGAGAAGTGACTTGAATAG+AGG - chr4_1:86077699-86077718 None:intergenic 40.0%
TCTATTCAAGTCACTTCTCC+TGG + chr4_1:86077698-86077717 Msa0580810:CDS 40.0%
AACCATAGAGTCACCCAAAA+AGG + chr4_1:86077724-86077743 Msa0580810:CDS 40.0%
!!! TTCCTTTTTGGGTGACTCTA+TGG - chr4_1:86077729-86077748 None:intergenic 40.0%
GCTTGAAACCAATAAGAGTG+GGG + chr4_1:86077877-86077896 Msa0580810:CDS 40.0%
TTTCTTGACCCCACTCTTAT+TGG - chr4_1:86077888-86077907 None:intergenic 40.0%
AAGAGTGGGGTCAAGAAATA+TGG + chr4_1:86077890-86077909 Msa0580810:CDS 40.0%
AGGAAAGCTGATGCTAAAGA+AGG + chr4_1:86077914-86077933 Msa0580810:CDS 40.0%
!! TGAGAAGCATTGGTGCTAAC+AGG - chr4_1:86075874-86075893 None:intergenic 45.0%
GCCAATGTAAGCCAAAGTGT+AGG + chr4_1:86076699-86076718 Msa0580810:CDS 45.0%
!! AATCAAGGGCACCTACACTT+TGG - chr4_1:86076713-86076732 None:intergenic 45.0%
GTCCTTGCCAGAGAAATCAA+GGG - chr4_1:86076727-86076746 None:intergenic 45.0%
TGTCCTTGCCAGAGAAATCA+AGG - chr4_1:86076728-86076747 None:intergenic 45.0%
CAAGTGCTAAACCACCAAGA+AGG + chr4_1:86076754-86076773 Msa0580810:CDS 45.0%
ACAGGATTAGAGAGCCTTCT+TGG - chr4_1:86076771-86076790 None:intergenic 45.0%
ATCTACAACTCCGAGTCCAA+AGG + chr4_1:86076797-86076816 Msa0580810:CDS 45.0%
!! TCTCTGAGACAAGATCAAGG+AGG + chr4_1:86076841-86076860 Msa0580810:CDS 45.0%
! ACTCGTTCGTCTGATGATGA+AGG + chr4_1:86077533-86077552 Msa0580810:CDS 45.0%
CTTCAGCACTTCTTCTACCA+TGG + chr4_1:86077559-86077578 Msa0580810:CDS 45.0%
ACTTCTTCTACCATGGCTAC+TGG + chr4_1:86077566-86077585 Msa0580810:CDS 45.0%
AGGCAGTGTTTAAGCACTTG+GGG - chr4_1:86077601-86077620 None:intergenic 45.0%
GAGGCAGTGTTTAAGCACTT+GGG - chr4_1:86077602-86077621 None:intergenic 45.0%
AGAGGCAGTGTTTAAGCACT+TGG - chr4_1:86077603-86077622 None:intergenic 45.0%
!! TTCCTTTTTGGGCGACTCTA+TGG - chr4_1:86077651-86077670 None:intergenic 45.0%
!! GGTGACTCTATGGTTTTACC+AGG - chr4_1:86077719-86077738 None:intergenic 45.0%
CTGGTAGTTTGAACCGTAGT+AGG + chr4_1:86077825-86077844 Msa0580810:CDS 45.0%
GTGGGGTCAAGAAATATGGA+AGG + chr4_1:86077894-86077913 Msa0580810:CDS 45.0%
CAGAAGCAGAGTTCCCTGAA+AGG - chr4_1:86075783-86075802 None:intergenic 50.0%
! TGCATCTGGCTTCTGTTCCT+TGG - chr4_1:86075851-86075870 None:intergenic 50.0%
!! TTGGTGCTAACAGGTGCATC+TGG - chr4_1:86075865-86075884 None:intergenic 50.0%
GTAGGTGCCCTTGATTTCTC+TGG + chr4_1:86076717-86076736 Msa0580810:CDS 50.0%
TGCCCTTGATTTCTCTGGCA+AGG + chr4_1:86076722-86076741 Msa0580810:CDS 50.0%
GGATTAGAGAGCCTTCTTGG+TGG - chr4_1:86076768-86076787 None:intergenic 50.0%
TACAACTCCGAGTCCAAAGG+CGG + chr4_1:86076800-86076819 Msa0580810:CDS 50.0%
GTTATGTTGCCAACCGCCTT+TGG - chr4_1:86076816-86076835 None:intergenic 50.0%
GAGACAAGATCAAGGAGGTC+TGG + chr4_1:86076846-86076865 Msa0580810:CDS 50.0%
AAATCTCAGAGACCGGCGTT+CGG - chr4_1:86076899-86076918 None:intergenic 50.0%
!! TTCAAACTAGCCTTGGAGGC+AGG + chr4_1:86077029-86077048 Msa0580810:CDS 50.0%
TGTAGTCTAGCCCACAACCA+CGG - chr4_1:86077277-86077296 None:intergenic 50.0%
GACGAACGAGTTTCCTCTTC+TGG - chr4_1:86077524-86077543 None:intergenic 50.0%
GGTCAGTTTACCAGTAGCCA+TGG - chr4_1:86077579-86077598 None:intergenic 50.0%
GGCAGTGTTTAAGCACTTGG+GGG - chr4_1:86077600-86077619 None:intergenic 50.0%
!! GGCGACTCTATGGCTTTAAC+AGG - chr4_1:86077641-86077660 None:intergenic 50.0%
AGCCATAGAGTCGCCCAAAA+AGG + chr4_1:86077646-86077665 Msa0580810:CDS 50.0%
GATCTAGAAGCCGAACGCAG+TGG - chr4_1:86075829-86075848 None:intergenic 55.0%
GCGTTCGGCTTCTAGATCCA+AGG + chr4_1:86075831-86075850 Msa0580810:CDS 55.0%
TTGCCAACCGCCTTTGGACT+CGG - chr4_1:86076810-86076829 None:intergenic 55.0%
!! GGGTTCTGGTTTGAGGCTCT+TGG - chr4_1:86076878-86076897 None:intergenic 55.0%
TCAAACCAGAACCCGAACGC+CGG + chr4_1:86076884-86076903 Msa0580810:CDS 55.0%
AATCTCAGAGACCGGCGTTC+GGG - chr4_1:86076898-86076917 None:intergenic 55.0%
TACCTCACATCCTGCCTCCA+AGG - chr4_1:86077042-86077061 None:intergenic 55.0%
TACATGAGTGGCCTCAACCG+TGG + chr4_1:86077257-86077276 Msa0580810:intron 55.0%
ACTCCGAGTCCAAAGGCGGT+TGG + chr4_1:86076804-86076823 Msa0580810:CDS 60.0%
!! GGCGTTCGGGTTCTGGTTTG+AGG - chr4_1:86076885-86076904 None:intergenic 60.0%
AGCCTTGGAGGCAGGATGTG+AGG + chr4_1:86077037-86077056 Msa0580810:CDS 60.0%
AGTGGCCTCAACCGTGGTTG+TGG + chr4_1:86077263-86077282 Msa0580810:intron 60.0%
GTGGCCTCAACCGTGGTTGT+GGG + chr4_1:86077264-86077283 Msa0580810:intron 60.0%
CTAGCCCACAACCACGGTTG+AGG - chr4_1:86077271-86077290 None:intergenic 60.0%
! AGAGACCGGCGTTCGGGTTC+TGG - chr4_1:86076892-86076911 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86075553 86078501 86075553 ID=Msa0580810;Name=Msa0580810
chr4_1 mRNA 86075553 86078501 86075553 ID=Msa0580810-mRNA-1;Parent=Msa0580810;Name=Msa0580810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=105|1|1|1|0.83|0.71|7|255|392
chr4_1 exon 86075553 86075691 86075553 ID=Msa0580810-mRNA-1:exon:31687;Parent=Msa0580810-mRNA-1
chr4_1 exon 86075788 86075902 86075788 ID=Msa0580810-mRNA-1:exon:31688;Parent=Msa0580810-mRNA-1
chr4_1 exon 86076686 86077058 86076686 ID=Msa0580810-mRNA-1:exon:31689;Parent=Msa0580810-mRNA-1
chr4_1 exon 86077365 86077935 86077365 ID=Msa0580810-mRNA-1:exon:31690;Parent=Msa0580810-mRNA-1
chr4_1 exon 86078030 86078073 86078030 ID=Msa0580810-mRNA-1:exon:31691;Parent=Msa0580810-mRNA-1
chr4_1 exon 86078176 86078400 86078176 ID=Msa0580810-mRNA-1:exon:31692;Parent=Msa0580810-mRNA-1
chr4_1 exon 86078430 86078501 86078430 ID=Msa0580810-mRNA-1:exon:31693;Parent=Msa0580810-mRNA-1
chr4_1 five_prime_UTR 86075553 86075657 86075553 ID=Msa0580810-mRNA-1:five_prime_utr;Parent=Msa0580810-mRNA-1
chr4_1 CDS 86075658 86075691 86075658 ID=Msa0580810-mRNA-1:cds;Parent=Msa0580810-mRNA-1
chr4_1 CDS 86075788 86075902 86075788 ID=Msa0580810-mRNA-1:cds;Parent=Msa0580810-mRNA-1
chr4_1 CDS 86076686 86077058 86076686 ID=Msa0580810-mRNA-1:cds;Parent=Msa0580810-mRNA-1
chr4_1 CDS 86077365 86077935 86077365 ID=Msa0580810-mRNA-1:cds;Parent=Msa0580810-mRNA-1
chr4_1 CDS 86078030 86078073 86078030 ID=Msa0580810-mRNA-1:cds;Parent=Msa0580810-mRNA-1
chr4_1 CDS 86078176 86078217 86078176 ID=Msa0580810-mRNA-1:cds;Parent=Msa0580810-mRNA-1
chr4_1 three_prime_UTR 86078218 86078400 86078218 ID=Msa0580810-mRNA-1:three_prime_utr;Parent=Msa0580810-mRNA-1
chr4_1 three_prime_UTR 86078430 86078501 86078430 ID=Msa0580810-mRNA-1:three_prime_utr;Parent=Msa0580810-mRNA-1
Gene Sequence

>Msa0580810

ATGGAAGAACAACAATCCTCTGTTGATGTTTCTGGGAACTCTGCTTCTGCGAAACCAAAACTTCAAAGATATCCACTGCGTTCGGCTTCTAGATCCAAGGAACAGAAGCCAGATGCACCTGTTAGCACCAATGCTTCTCAATCTAAGAGAGGAAGAAGTACTGCCAATGTAAGCCAAAGTGTAGGTGCCCTTGATTTCTCTGGCAAGGACAGATCTTCAAGTGCTAAACCACCAAGAAGGCTCTCTAATCCTGTCAAATCATCTACAACTCCGAGTCCAAAGGCGGTTGGCAACATAACCCCAATCTCTGAGACAAGATCAAGGAGGTCTGGAAATAGCCAAGAGCCTCAAACCAGAACCCGAACGCCGGTCTCTGAGATTTTCAGATCATCTACTAAAATGAAGTTTAGTCTCTTGTCTTCAGCTTCATATTGGTTAAGCCAAATCAAGCTCTCTGAAAATGTTGAAAAGCACAACATTTCACTTGGATTCTTCAAACTAGCCTTGGAGGCAGGATGTGAGCCCTTCCAGAAATTACAAGACGAGCTGAAGTGTTACTTGCTCCGACACCAACAAAAACTTACTGAACTTGGAGAACAAGTGAAAGTACTGGTAGAAAGCTATAACATTGCAGAAGTCATAGAGCAGTCTCAAGTTTCTGAGAGTATTTCACAGATGCCAGAAGAGGAAACTCGTTCGTCTGATGATGAAGGCAACTTCAGCACTTCTTCTACCATGGCTACTGGTAAACTGACCCCCAAGTGCTTAAACACTGCCTCTATTCAAGTCATTTCTCCTGTTAAAGCCATAGAGTCGCCCAAAAAGGAAATTAGCCAAAAGAAAAATCTCACTGCCTCTATTCAAGTCACTTCTCCTGGTAAAACCATAGAGTCACCCAAAAAGGAAACTAGCCAAAAGAAAAATCTTGGAACCAAGTTGAGAGAAAATCTCAGAATGAACTCTGCAATTTCAAAATCTGCTTCTGGTAGTTTGAACCGTAGTAGGTCAGTTAAAAAGTCAGATAAGCCAAGCAAGCTTGAAACCAATAAGAGTGGGGTCAAGAAATATGGAAGGAAAGCTGATGCTAAAGAAGTTTCTGTTAGTCCTATTACAAGTGCTGAAGAAAAAGAAAATATGGATGTTCGGTCCACTGATGATGATTTGATTGAAGTCATGTAA

Protein sequence

>Msa0580810

MEEQQSSVDVSGNSASAKPKLQRYPLRSASRSKEQKPDAPVSTNASQSKRGRSTANVSQSVGALDFSGKDRSSSAKPPRRLSNPVKSSTTPSPKAVGNITPISETRSRRSGNSQEPQTRTRTPVSEIFRSSTKMKFSLLSSASYWLSQIKLSENVEKHNISLGFFKLALEAGCEPFQKLQDELKCYLLRHQQKLTELGEQVKVLVESYNIAEVIEQSQVSESISQMPEEETRSSDDEGNFSTSSTMATGKLTPKCLNTASIQVISPVKAIESPKKEISQKKNLTASIQVTSPGKTIESPKKETSQKKNLGTKLRENLRMNSAISKSASGSLNRSRSVKKSDKPSKLETNKSGVKKYGRKADAKEVSVSPITSAEEKENMDVRSTDDDLIEVM*