AlfalfaGEDB | Msa0172480

M. sativa cultivar zhongmu-4 / Msa0172480

KEGG: K11275
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013
PFAM: PF00538.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172480	XP_013468967.1	94.681	188	5	2	1	187	1	184	1.35e-101	300

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172480	sp\|P26569\|H12_ARATH	68.085	94	29	1	26	119	61	153	8.01e-31	116

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172480	A0A072VLX5	94.681	188	5	2	1	187	1	184	6.47e-102	300

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016040	Msa0172480	0.801185	1.014433e-48	-8.615850e-47
Msa0032230	Msa0172480	0.862851	3.780302e-64	-8.615850e-47
Msa0034830	Msa0172480	0.811479	6.857831e-51	-8.615850e-47
Msa0068150	Msa0172480	0.804325	2.280384e-49	-8.615850e-47
Msa0077560	Msa0172480	0.819843	9.385282e-53	-8.615850e-47
Msa0081980	Msa0172480	0.801115	1.048260e-48	-8.615850e-47
Msa0082020	Msa0172480	0.800695	1.277440e-48	-8.615850e-47
Msa0143670	Msa0172480	0.837765	4.284180e-57	-8.615850e-47
Msa0172480	Msa0172510	0.942066	1.385246e-101	-8.615850e-47
Msa0172480	Msa0190730	0.815924	7.203855e-52	-8.615850e-47
Msa0172480	Msa0194630	0.817180	3.768729e-52	-8.615850e-47
Msa0172480	Msa0223080	0.803234	3.842574e-49	-8.615850e-47
Msa0172480	Msa0238900	0.800221	1.595505e-48	-8.615850e-47
Msa0172480	Msa0271880	0.808119	3.621410e-50	-8.615850e-47
Msa0172480	Msa0302160	0.800070	1.712414e-48	-8.615850e-47
Msa0172480	Msa0310850	0.809891	1.512402e-50	-8.615850e-47
Msa0172480	Msa0361910	0.818966	1.487692e-52	-8.615850e-47
Msa0172480	Msa0367150	0.816980	4.180898e-52	-8.615850e-47
Msa0172480	Msa0380490	0.869170	3.783030e-66	-8.615850e-47
Msa0172480	Msa0409830	0.830275	3.218402e-55	-8.615850e-47
Msa0172480	Msa0414880	0.815742	7.911749e-52	-8.615850e-47
Msa0172480	Msa0422050	0.809612	1.736590e-50	-8.615850e-47
Msa0172480	Msa0430000	0.865376	6.176069e-65	-8.615850e-47
Msa0172480	Msa0432010	0.801826	7.496466e-49	-8.615850e-47
Msa0172480	Msa0459740	0.803574	3.266897e-49	-8.615850e-47
Msa0172480	Msa0460780	0.831974	1.231175e-55	-8.615850e-47
Msa0172480	Msa0468700	0.801299	9.615269e-49	-8.615850e-47
Msa0172480	Msa0481890	0.828112	1.077204e-54	-8.615850e-47
Msa0172480	Msa0500570	0.854417	1.248333e-61	-8.615850e-47
Msa0172480	Msa0500650	0.811029	8.586098e-51	-8.615850e-47
Msa0172480	Msa0507020	0.822737	2.018182e-53	-8.615850e-47
Msa0172480	Msa0514580	0.800703	1.272546e-48	-8.615850e-47
Msa0172480	Msa0531960	0.816029	6.824361e-52	-8.615850e-47
Msa0172480	Msa0580810	0.831635	1.493077e-55	-8.615850e-47
Msa0172480	Msa0666700	0.805580	1.246634e-49	-8.615850e-47
Msa0172480	Msa0709440	0.827608	1.424499e-54	-8.615850e-47
Msa0172480	Msa0716480	0.807594	4.684240e-50	-8.615850e-47
Msa0172480	Msa0740710	0.828941	6.795229e-55	-8.615850e-47
Msa0172480	Msa0758590	0.815962	7.066504e-52	-8.615850e-47
Msa0172480	Msa0780910	0.817117	3.893229e-52	-8.615850e-47
Msa0172480	Msa0815970	0.812802	3.529526e-51	-8.615850e-47
Msa0172480	Msa0821160	0.806951	6.409183e-50	-8.615850e-47
Msa0172480	Msa0837460	0.803144	4.009599e-49	-8.615850e-47
Msa0172480	Msa0850690	0.811089	8.334523e-51	-8.615850e-47
Msa0172480	Msa0909760	0.806435	8.236521e-50	-8.615850e-47
Msa0172480	Msa1084530	0.816820	4.540715e-52	-8.615850e-47
Msa0172480	Msa1125820	0.819473	1.140062e-52	-8.615850e-47
Msa0172480	Msa1125990	0.822265	2.597744e-53	-8.615850e-47
Msa0172480	Msa1162230	0.811370	7.244019e-51	-8.615850e-47
Msa0172480	Msa1171290	0.826081	3.298935e-54	-8.615850e-47
Msa0172480	Msa1440880	0.818371	2.029415e-52	-8.615850e-47
Msa0172480	Msa1441960	0.820637	6.175503e-53	-8.615850e-47
Msa0172480	Msa1454010	0.801018	1.097544e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172480	MtrunA17_Chr1g0190561	94.681	188	5	2	1	187	1	184	1.25e-105	300
Msa0172480	MtrunA17_Chr1g0184561	69.880	83	25	0	14	96	50	132	6.62e-27	102
Msa0172480	MtrunA17_Chr1g0184661	69.880	83	25	0	14	96	50	132	2.18e-26	101
Msa0172480	MtrunA17_Chr1g0184671	63.964	111	38	2	26	134	9	119	7.40e-26	99.0
Msa0172480	MtrunA17_Chr7g0260771	61.644	73	28	0	21	93	56	128	9.98e-26	100
Msa0172480	MtrunA17_Chr5g0405221	50.000	72	35	1	26	96	34	105	1.30e-17	75.9
Msa0172480	MtrunA17_Chr8g0372961	69.048	42	13	0	14	55	49	90	2.10e-13	63.2
Msa0172480	MtrunA17_Chr3g0110481	42.857	70	40	0	22	91	8	77	6.47e-13	63.9
Msa0172480	MtrunA17_Chr6g0482691	44.444	72	37	1	25	93	40	111	1.48e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172480	AT2G30620.2	68.085	94	29	1	26	119	61	153	2.48e-32	115
Msa0172480	AT2G30620.1	68.085	94	29	1	26	119	61	153	8.14e-32	116
Msa0172480	AT1G06760.1	77.941	68	15	0	26	93	61	128	1.38e-23	94.7
Msa0172480	AT2G18050.1	44.094	127	62	3	16	133	8	134	4.37e-21	85.5
Msa0172480	AT2G18050.2	39.024	123	70	3	33	150	1	123	1.34e-16	73.2

Find 57 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGGCTTCGCCGCTGCTTT+TGG	0.203938	1_4:-57544443	None:intergenic
CTTGGGCTTGGGCTTGGGCT+TGG	0.204653	1_4:-57543947	None:intergenic
ATTATAATTATAATATTATT+AGG	0.230112	1_4:+57544670	Msa0172480:three_prime_UTR
TTTGGCTTTGCGGCAGCTTT+CGG	0.250457	1_4:-57544425	None:intergenic
CGGCTTAGTTGCAGCCTTAC+CGG	0.282708	1_4:-57544381	None:intergenic
TTTGCTGTAAATTCTTTGAT+AGG	0.309454	1_4:+57544701	Msa0172480:three_prime_UTR
CCCTTAACACTCTTCGCTTT+CGG	0.311339	1_4:-57544479	None:intergenic
CTGAAGAAATCTGTGGCTTC+TGG	0.328322	1_4:+57544245	Msa0172480:CDS
AAACAGAAAACTAATTCATT+AGG	0.336989	1_4:-57544759	None:intergenic
CTTGGTCTGAGCAGCGGCGG+TGG	0.350352	1_4:-57543929	None:intergenic
TTCACAGCAGCTTTCGCCTT+CGG	0.369735	1_4:-57544401	None:intergenic
TTCGGCTTCACAACAGCTTT+AGG	0.372527	1_4:-57544461	None:intergenic
ACCGGAGTCTTAACACTCTT+CGG	0.394389	1_4:-57544545	None:intergenic
TTCTTCGCCGCTTTCTTCAC+AGG	0.416978	1_4:-57544506	None:intergenic
AGAATGAGTTTGCGGAATGT+TGG	0.442341	1_4:-57544215	None:intergenic
TTAGTTGCAGCCTTACCGGC+TGG	0.443488	1_4:-57544377	None:intergenic
GGAGCAGTAGCGGCCTTCAC+CGG	0.448419	1_4:-57544326	None:intergenic
GATGAAGAAGAATGAGTTTG+CGG	0.452593	1_4:-57544223	None:intergenic
GTGAGTTTGAAAGAAAGAAC+TGG	0.455638	1_4:+57544137	Msa0172480:CDS
CACTTCTTAGCTTTCTTCAC+CGG	0.455761	1_4:-57544563	None:intergenic
CCGAAAGCGAAGAGTGTTAA+GGG	0.457605	1_4:+57544479	Msa0172480:CDS
GCCGAAAGCGAAGAGTGTTA+AGG	0.460757	1_4:+57544478	Msa0172480:CDS
CGCTACTGCTCCTGCTAAGA+AGG	0.467466	1_4:+57544337	Msa0172480:CDS
TAGTGATGTGTGAAATTTGA+GGG	0.475301	1_4:+57544615	Msa0172480:three_prime_UTR
ACAGCCTTAGCCTTCTTAGC+AGG	0.476334	1_4:-57544347	None:intergenic
AACTCTTTCTCTCTCTAAAA+CGG	0.479913	1_4:+57543859	Msa0172480:five_prime_UTR
TTGGTCTGAGCAGCGGCGGT+GGG	0.488362	1_4:-57543928	None:intergenic
GGCGAAAACTGCTCCGGTGA+AGG	0.508511	1_4:+57544313	Msa0172480:CDS
TGTGAAGAAAGCGGCGAAGA+AGG	0.511913	1_4:+57544508	Msa0172480:CDS
TGTTACGAAGCCAGCCGGTA+AGG	0.517257	1_4:+57544367	Msa0172480:CDS
AGCAGCGGCGGTGGGAGACA+TGG	0.520541	1_4:-57543920	None:intergenic
TGAATTTCGTTATCGCGTGT+TGG	0.523300	1_4:-57544166	None:intergenic
CTTCAAAATCGCTCCGGCAG+CGG	0.533005	1_4:+57544292	Msa0172480:CDS
CATGGTTGAGACTTGAGAAT+CGG	0.536882	1_4:-57543902	None:intergenic
ATTCATCGAAGAGAAGCATA+AGG	0.536890	1_4:+57544184	Msa0172480:CDS
TGCCGCAAAGCCAAAAGCAG+CGG	0.551299	1_4:+57544433	Msa0172480:CDS
TGCTCCTGCTAAGAAGGCTA+AGG	0.552889	1_4:+57544343	Msa0172480:CDS
AAACTCCTTCAAAATCGCTC+CGG	0.553204	1_4:+57544286	Msa0172480:CDS
GAGAGGCTTCTTTGCTGCAG+CGG	0.555043	1_4:-57543974	None:intergenic
GGGCTTGGTCTGAGCAGCGG+CGG	0.555862	1_4:-57543932	None:intergenic
GGCAGCGGCGAAAACTGCTC+CGG	0.555880	1_4:+57544307	Msa0172480:CDS
ATAATTATAATATTATTAGG+AGG	0.563101	1_4:+57544673	Msa0172480:three_prime_UTR
AAAATTAGGGTTTAATTTGG+GGG	0.564924	1_4:+57544588	Msa0172480:three_prime_UTR
GTTATTACCTCAGCGTAGGT+AGG	0.578831	1_4:-57544003	None:intergenic
TCTTCATCTGAAGAAATCTG+TGG	0.580993	1_4:+57544238	Msa0172480:CDS
CTTGGGCTTGGTCTGAGCAG+CGG	0.582303	1_4:-57543935	None:intergenic
GGCTTCTGGCAAGCTCGTGA+AGG	0.588674	1_4:+57544259	Msa0172480:CDS
GCCGAAGAGTGTTAAGACTC+CGG	0.591306	1_4:+57544544	Msa0172480:CDS
ATTTGTTATTACCTCAGCGT+AGG	0.593667	1_4:-57544007	None:intergenic
TTAGTGATGTGTGAAATTTG+AGG	0.614228	1_4:+57544614	Msa0172480:three_prime_UTR
AAGGCTGTTACGAAGCCAGC+CGG	0.614320	1_4:+57544362	Msa0172480:CDS
TAAGGCTGCAACTAAGCCGA+AGG	0.619656	1_4:+57544385	Msa0172480:CDS
CTTCTTAGCAGGAGCAGTAG+CGG	0.626747	1_4:-57544336	None:intergenic
GAAGAAAGCGGCGAAGAAGG+TGG	0.636706	1_4:+57544511	Msa0172480:CDS
GCGTAGGTAGGATGAGAGAG+AGG	0.655352	1_4:-57543991	None:intergenic
CTCTCATCCTACCTACGCTG+AGG	0.671811	1_4:+57543996	Msa0172480:CDS
GGGTACGCCTGTGAAGAAAG+CGG	0.711847	1_4:+57544499	Msa0172480:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTATAATTATAATATTATT+AGG	+	chr1_4:57544670-57544689	Msa0172480:three_prime_UTR	0.0%
!!	ATTATAATTATAATATTATT+AGG	+	chr1_4:57544670-57544689	Msa0172480:three_prime_UTR	0.0%
!!	ATAATTATAATATTATTAGG+AGG	+	chr1_4:57544673-57544692	Msa0172480:three_prime_UTR	10.0%
!!	ATAATTATAATATTATTAGG+AGG	+	chr1_4:57544673-57544692	Msa0172480:three_prime_UTR	10.0%
!!!	TTTTTTTTTGTAGATGATAA+CGG	+	chr1_4:57544106-57544125	Msa0172480:intron	15.0%
!!!	AAAAAATTAGGGTTTAATTT+GGG	+	chr1_4:57544586-57544605	Msa0172480:exon	15.0%
!!!	TTTTTTTTTGTAGATGATAA+CGG	+	chr1_4:57544106-57544125	Msa0172480:intron	15.0%
!!!	AAAAAATTAGGGTTTAATTT+GGG	+	chr1_4:57544586-57544605	Msa0172480:exon	15.0%
!!	GAAAAAATTAGGGTTTAATT+TGG	+	chr1_4:57544585-57544604	Msa0172480:exon	20.0%
!!!	AAAAATTAGGGTTTAATTTG+GGG	+	chr1_4:57544587-57544606	Msa0172480:three_prime_UTR	20.0%
!!	AAACAGAAAACTAATTCATT+AGG	-	chr1_4:57544762-57544781	None:intergenic	20.0%
!!	GAAAAAATTAGGGTTTAATT+TGG	+	chr1_4:57544585-57544604	Msa0172480:exon	20.0%
!!!	AAAAATTAGGGTTTAATTTG+GGG	+	chr1_4:57544587-57544606	Msa0172480:three_prime_UTR	20.0%
!!	AAACAGAAAACTAATTCATT+AGG	-	chr1_4:57544762-57544781	None:intergenic	20.0%
!	AGCTAAGAAGTGAAAAAATT+AGG	+	chr1_4:57544574-57544593	Msa0172480:exon	25.0%
!	GCTAAGAAGTGAAAAAATTA+GGG	+	chr1_4:57544575-57544594	Msa0172480:exon	25.0%
!!!	AAAATTAGGGTTTAATTTGG+GGG	+	chr1_4:57544588-57544607	Msa0172480:three_prime_UTR	25.0%
!!	TTTGCTGTAAATTCTTTGAT+AGG	+	chr1_4:57544701-57544720	Msa0172480:three_prime_UTR	25.0%
!	AGCTAAGAAGTGAAAAAATT+AGG	+	chr1_4:57544574-57544593	Msa0172480:exon	25.0%
!	GCTAAGAAGTGAAAAAATTA+GGG	+	chr1_4:57544575-57544594	Msa0172480:exon	25.0%
!!!	AAAATTAGGGTTTAATTTGG+GGG	+	chr1_4:57544588-57544607	Msa0172480:three_prime_UTR	25.0%
!!	TTTGCTGTAAATTCTTTGAT+AGG	+	chr1_4:57544701-57544720	Msa0172480:three_prime_UTR	25.0%
!	AACTCTTTCTCTCTCTAAAA+CGG	+	chr1_4:57543859-57543878	Msa0172480:five_prime_UTR	30.0%
	TTAGTGATGTGTGAAATTTG+AGG	+	chr1_4:57544614-57544633	Msa0172480:three_prime_UTR	30.0%
	TAGTGATGTGTGAAATTTGA+GGG	+	chr1_4:57544615-57544634	Msa0172480:three_prime_UTR	30.0%
!	AACTCTTTCTCTCTCTAAAA+CGG	+	chr1_4:57543859-57543878	Msa0172480:five_prime_UTR	30.0%
	TTAGTGATGTGTGAAATTTG+AGG	+	chr1_4:57544614-57544633	Msa0172480:three_prime_UTR	30.0%
	TAGTGATGTGTGAAATTTGA+GGG	+	chr1_4:57544615-57544634	Msa0172480:three_prime_UTR	30.0%
!!	ATTTGTTATTACCTCAGCGT+AGG	-	chr1_4:57544010-57544029	None:intergenic	35.0%
	GTGAGTTTGAAAGAAAGAAC+TGG	+	chr1_4:57544137-57544156	Msa0172480:CDS	35.0%
!	ATTCATCGAAGAGAAGCATA+AGG	+	chr1_4:57544184-57544203	Msa0172480:CDS	35.0%
	GATGAAGAAGAATGAGTTTG+CGG	-	chr1_4:57544226-57544245	None:intergenic	35.0%
	TCTTCATCTGAAGAAATCTG+TGG	+	chr1_4:57544238-57544257	Msa0172480:CDS	35.0%
!!	ATTTGTTATTACCTCAGCGT+AGG	-	chr1_4:57544010-57544029	None:intergenic	35.0%
	GTGAGTTTGAAAGAAAGAAC+TGG	+	chr1_4:57544137-57544156	Msa0172480:CDS	35.0%
!	ATTCATCGAAGAGAAGCATA+AGG	+	chr1_4:57544184-57544203	Msa0172480:CDS	35.0%
	GATGAAGAAGAATGAGTTTG+CGG	-	chr1_4:57544226-57544245	None:intergenic	35.0%
	TCTTCATCTGAAGAAATCTG+TGG	+	chr1_4:57544238-57544257	Msa0172480:CDS	35.0%
	CATGGTTGAGACTTGAGAAT+CGG	-	chr1_4:57543905-57543924	None:intergenic	40.0%
	TGAATTTCGTTATCGCGTGT+TGG	-	chr1_4:57544169-57544188	None:intergenic	40.0%
	AGAATGAGTTTGCGGAATGT+TGG	-	chr1_4:57544218-57544237	None:intergenic	40.0%
	AAACTCCTTCAAAATCGCTC+CGG	+	chr1_4:57544286-57544305	Msa0172480:CDS	40.0%
!	CACTTCTTAGCTTTCTTCAC+CGG	-	chr1_4:57544566-57544585	None:intergenic	40.0%
	CATGGTTGAGACTTGAGAAT+CGG	-	chr1_4:57543905-57543924	None:intergenic	40.0%
	TGAATTTCGTTATCGCGTGT+TGG	-	chr1_4:57544169-57544188	None:intergenic	40.0%
	AGAATGAGTTTGCGGAATGT+TGG	-	chr1_4:57544218-57544237	None:intergenic	40.0%
	AAACTCCTTCAAAATCGCTC+CGG	+	chr1_4:57544286-57544305	Msa0172480:CDS	40.0%
!	CACTTCTTAGCTTTCTTCAC+CGG	-	chr1_4:57544566-57544585	None:intergenic	40.0%
!	TTTGCTGCAGCGGTTTTCTT+GGG	-	chr1_4:57543967-57543986	None:intergenic	45.0%
	GTTATTACCTCAGCGTAGGT+AGG	-	chr1_4:57544006-57544025	None:intergenic	45.0%
	CTGAAGAAATCTGTGGCTTC+TGG	+	chr1_4:57544245-57544264	Msa0172480:CDS	45.0%
	TTCGGCTTCACAACAGCTTT+AGG	-	chr1_4:57544464-57544483	None:intergenic	45.0%
	CCCTTAACACTCTTCGCTTT+CGG	-	chr1_4:57544482-57544501	None:intergenic	45.0%
!!	CCGAAAGCGAAGAGTGTTAA+GGG	+	chr1_4:57544479-57544498	Msa0172480:CDS	45.0%
	ACCGGAGTCTTAACACTCTT+CGG	-	chr1_4:57544548-57544567	None:intergenic	45.0%
!	TTTGCTGCAGCGGTTTTCTT+GGG	-	chr1_4:57543967-57543986	None:intergenic	45.0%
	GTTATTACCTCAGCGTAGGT+AGG	-	chr1_4:57544006-57544025	None:intergenic	45.0%
	CTGAAGAAATCTGTGGCTTC+TGG	+	chr1_4:57544245-57544264	Msa0172480:CDS	45.0%
	TTCGGCTTCACAACAGCTTT+AGG	-	chr1_4:57544464-57544483	None:intergenic	45.0%
	CCCTTAACACTCTTCGCTTT+CGG	-	chr1_4:57544482-57544501	None:intergenic	45.0%
!!	CCGAAAGCGAAGAGTGTTAA+GGG	+	chr1_4:57544479-57544498	Msa0172480:CDS	45.0%
	ACCGGAGTCTTAACACTCTT+CGG	-	chr1_4:57544548-57544567	None:intergenic	45.0%
!	GTTTTCTTGGGCTTGGGCTT+GGG	-	chr1_4:57543955-57543974	None:intergenic	50.0%
!	CTTTGCTGCAGCGGTTTTCT+TGG	-	chr1_4:57543968-57543987	None:intergenic	50.0%
	CTTCTTAGCAGGAGCAGTAG+CGG	-	chr1_4:57544339-57544358	None:intergenic	50.0%
	TGCTCCTGCTAAGAAGGCTA+AGG	+	chr1_4:57544343-57544362	Msa0172480:CDS	50.0%
!	ACAGCCTTAGCCTTCTTAGC+AGG	-	chr1_4:57544350-57544369	None:intergenic	50.0%
	TAAGGCTGCAACTAAGCCGA+AGG	+	chr1_4:57544385-57544404	Msa0172480:CDS	50.0%
	TTCACAGCAGCTTTCGCCTT+CGG	-	chr1_4:57544404-57544423	None:intergenic	50.0%
!!	TTTGGCTTTGCGGCAGCTTT+CGG	-	chr1_4:57544428-57544447	None:intergenic	50.0%
!!	GCCGAAAGCGAAGAGTGTTA+AGG	+	chr1_4:57544478-57544497	Msa0172480:CDS	50.0%
!	TTCTTCGCCGCTTTCTTCAC+AGG	-	chr1_4:57544509-57544528	None:intergenic	50.0%
	TGTGAAGAAAGCGGCGAAGA+AGG	+	chr1_4:57544508-57544527	Msa0172480:CDS	50.0%
!!	GCCGAAGAGTGTTAAGACTC+CGG	+	chr1_4:57544544-57544563	Msa0172480:CDS	50.0%
!	GTTTTCTTGGGCTTGGGCTT+GGG	-	chr1_4:57543955-57543974	None:intergenic	50.0%
!	CTTTGCTGCAGCGGTTTTCT+TGG	-	chr1_4:57543968-57543987	None:intergenic	50.0%
	CTTCTTAGCAGGAGCAGTAG+CGG	-	chr1_4:57544339-57544358	None:intergenic	50.0%
	TGCTCCTGCTAAGAAGGCTA+AGG	+	chr1_4:57544343-57544362	Msa0172480:CDS	50.0%
!	ACAGCCTTAGCCTTCTTAGC+AGG	-	chr1_4:57544350-57544369	None:intergenic	50.0%
	TAAGGCTGCAACTAAGCCGA+AGG	+	chr1_4:57544385-57544404	Msa0172480:CDS	50.0%
	TTCACAGCAGCTTTCGCCTT+CGG	-	chr1_4:57544404-57544423	None:intergenic	50.0%
!!	TTTGGCTTTGCGGCAGCTTT+CGG	-	chr1_4:57544428-57544447	None:intergenic	50.0%
!!	GCCGAAAGCGAAGAGTGTTA+AGG	+	chr1_4:57544478-57544497	Msa0172480:CDS	50.0%
!	TTCTTCGCCGCTTTCTTCAC+AGG	-	chr1_4:57544509-57544528	None:intergenic	50.0%
	TGTGAAGAAAGCGGCGAAGA+AGG	+	chr1_4:57544508-57544527	Msa0172480:CDS	50.0%
!!	GCCGAAGAGTGTTAAGACTC+CGG	+	chr1_4:57544544-57544563	Msa0172480:CDS	50.0%
!	GGTTTTCTTGGGCTTGGGCT+TGG	-	chr1_4:57543956-57543975	None:intergenic	55.0%
!	GCAGCGGTTTTCTTGGGCTT+GGG	-	chr1_4:57543961-57543980	None:intergenic	55.0%
!	TGCAGCGGTTTTCTTGGGCT+TGG	-	chr1_4:57543962-57543981	None:intergenic	55.0%
	GAGAGGCTTCTTTGCTGCAG+CGG	-	chr1_4:57543977-57543996	None:intergenic	55.0%
	GCGTAGGTAGGATGAGAGAG+AGG	-	chr1_4:57543994-57544013	None:intergenic	55.0%
	CTCTCATCCTACCTACGCTG+AGG	+	chr1_4:57543996-57544015	Msa0172480:CDS	55.0%
	CTTCAAAATCGCTCCGGCAG+CGG	+	chr1_4:57544292-57544311	Msa0172480:CDS	55.0%
	CGCTACTGCTCCTGCTAAGA+AGG	+	chr1_4:57544337-57544356	Msa0172480:CDS	55.0%
	AAGGCTGTTACGAAGCCAGC+CGG	+	chr1_4:57544362-57544381	Msa0172480:CDS	55.0%
	TGTTACGAAGCCAGCCGGTA+AGG	+	chr1_4:57544367-57544386	Msa0172480:CDS	55.0%
	TTAGTTGCAGCCTTACCGGC+TGG	-	chr1_4:57544380-57544399	None:intergenic	55.0%
	CGGCTTAGTTGCAGCCTTAC+CGG	-	chr1_4:57544384-57544403	None:intergenic	55.0%
	TGCCGCAAAGCCAAAAGCAG+CGG	+	chr1_4:57544433-57544452	Msa0172480:CDS	55.0%
!!	TTAGGCTTCGCCGCTGCTTT+TGG	-	chr1_4:57544446-57544465	None:intergenic	55.0%
	GGGTACGCCTGTGAAGAAAG+CGG	+	chr1_4:57544499-57544518	Msa0172480:CDS	55.0%
	GAAGAAAGCGGCGAAGAAGG+TGG	+	chr1_4:57544511-57544530	Msa0172480:CDS	55.0%
!	GGTTTTCTTGGGCTTGGGCT+TGG	-	chr1_4:57543956-57543975	None:intergenic	55.0%
!	GCAGCGGTTTTCTTGGGCTT+GGG	-	chr1_4:57543961-57543980	None:intergenic	55.0%
!	TGCAGCGGTTTTCTTGGGCT+TGG	-	chr1_4:57543962-57543981	None:intergenic	55.0%
	GAGAGGCTTCTTTGCTGCAG+CGG	-	chr1_4:57543977-57543996	None:intergenic	55.0%
	GCGTAGGTAGGATGAGAGAG+AGG	-	chr1_4:57543994-57544013	None:intergenic	55.0%
	CTCTCATCCTACCTACGCTG+AGG	+	chr1_4:57543996-57544015	Msa0172480:CDS	55.0%
	CTTCAAAATCGCTCCGGCAG+CGG	+	chr1_4:57544292-57544311	Msa0172480:CDS	55.0%
	CGCTACTGCTCCTGCTAAGA+AGG	+	chr1_4:57544337-57544356	Msa0172480:CDS	55.0%
	AAGGCTGTTACGAAGCCAGC+CGG	+	chr1_4:57544362-57544381	Msa0172480:CDS	55.0%
	TGTTACGAAGCCAGCCGGTA+AGG	+	chr1_4:57544367-57544386	Msa0172480:CDS	55.0%
	TTAGTTGCAGCCTTACCGGC+TGG	-	chr1_4:57544380-57544399	None:intergenic	55.0%
	CGGCTTAGTTGCAGCCTTAC+CGG	-	chr1_4:57544384-57544403	None:intergenic	55.0%
	TGCCGCAAAGCCAAAAGCAG+CGG	+	chr1_4:57544433-57544452	Msa0172480:CDS	55.0%
!!	TTAGGCTTCGCCGCTGCTTT+TGG	-	chr1_4:57544446-57544465	None:intergenic	55.0%
	GGGTACGCCTGTGAAGAAAG+CGG	+	chr1_4:57544499-57544518	Msa0172480:CDS	55.0%
	GAAGAAAGCGGCGAAGAAGG+TGG	+	chr1_4:57544511-57544530	Msa0172480:CDS	55.0%
!	CTTGGGCTTGGTCTGAGCAG+CGG	-	chr1_4:57543938-57543957	None:intergenic	60.0%
	GGCTTCTGGCAAGCTCGTGA+AGG	+	chr1_4:57544259-57544278	Msa0172480:CDS	60.0%
!	CGCTGCCGGAGCGATTTTGA+AGG	-	chr1_4:57544294-57544313	None:intergenic	60.0%
	GGCGAAAACTGCTCCGGTGA+AGG	+	chr1_4:57544313-57544332	Msa0172480:CDS	60.0%
!!!	CGCCGCTGCTTTTGGCTTTG+CGG	-	chr1_4:57544438-57544457	None:intergenic	60.0%
!	CTTGGGCTTGGTCTGAGCAG+CGG	-	chr1_4:57543938-57543957	None:intergenic	60.0%
	GGCTTCTGGCAAGCTCGTGA+AGG	+	chr1_4:57544259-57544278	Msa0172480:CDS	60.0%
!	CGCTGCCGGAGCGATTTTGA+AGG	-	chr1_4:57544294-57544313	None:intergenic	60.0%
	GGCGAAAACTGCTCCGGTGA+AGG	+	chr1_4:57544313-57544332	Msa0172480:CDS	60.0%
!!!	CGCCGCTGCTTTTGGCTTTG+CGG	-	chr1_4:57544438-57544457	None:intergenic	60.0%
	TTGGTCTGAGCAGCGGCGGT+GGG	-	chr1_4:57543931-57543950	None:intergenic	65.0%
	CTTGGGCTTGGGCTTGGGCT+TGG	-	chr1_4:57543950-57543969	None:intergenic	65.0%
!	GGAGCAGTTTTCGCCGCTGC+CGG	-	chr1_4:57544308-57544327	None:intergenic	65.0%
	GGCAGCGGCGAAAACTGCTC+CGG	+	chr1_4:57544307-57544326	Msa0172480:CDS	65.0%
	GGAGCAGTAGCGGCCTTCAC+CGG	-	chr1_4:57544329-57544348	None:intergenic	65.0%
	TTGGTCTGAGCAGCGGCGGT+GGG	-	chr1_4:57543931-57543950	None:intergenic	65.0%
	CTTGGGCTTGGGCTTGGGCT+TGG	-	chr1_4:57543950-57543969	None:intergenic	65.0%
!	GGAGCAGTTTTCGCCGCTGC+CGG	-	chr1_4:57544308-57544327	None:intergenic	65.0%
	GGCAGCGGCGAAAACTGCTC+CGG	+	chr1_4:57544307-57544326	Msa0172480:CDS	65.0%
	GGAGCAGTAGCGGCCTTCAC+CGG	-	chr1_4:57544329-57544348	None:intergenic	65.0%
	AGCAGCGGCGGTGGGAGACA+TGG	-	chr1_4:57543923-57543942	None:intergenic	70.0%
	CTTGGTCTGAGCAGCGGCGG+TGG	-	chr1_4:57543932-57543951	None:intergenic	70.0%
!	GGGCTTGGTCTGAGCAGCGG+CGG	-	chr1_4:57543935-57543954	None:intergenic	70.0%
	AGCAGCGGCGGTGGGAGACA+TGG	-	chr1_4:57543923-57543942	None:intergenic	70.0%
	CTTGGTCTGAGCAGCGGCGG+TGG	-	chr1_4:57543932-57543951	None:intergenic	70.0%
!	GGGCTTGGTCTGAGCAGCGG+CGG	-	chr1_4:57543935-57543954	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	57543817	57544788	57543817	ID=Msa0172480;Name=Msa0172480
chr1_4	mRNA	57543817	57544788	57543817	ID=Msa0172480-mRNA-1;Parent=Msa0172480;Name=Msa0172480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105\|1\|1\|1\|1\|1\|2\|202\|187
chr1_4	exon	57543817	57544017	57543817	ID=Msa0172480-mRNA-1:exon:17592;Parent=Msa0172480-mRNA-1
chr1_4	exon	57544119	57544788	57544119	ID=Msa0172480-mRNA-1:exon:17593;Parent=Msa0172480-mRNA-1
chr1_4	five_prime_UTR	57543817	57543921	57543817	ID=Msa0172480-mRNA-1:five_prime_utr;Parent=Msa0172480-mRNA-1
chr1_4	CDS	57543922	57544017	57543922	ID=Msa0172480-mRNA-1:cds;Parent=Msa0172480-mRNA-1
chr1_4	CDS	57544119	57544586	57544119	ID=Msa0172480-mRNA-1:cds;Parent=Msa0172480-mRNA-1
chr1_4	three_prime_UTR	57544587	57544788	57544587	ID=Msa0172480-mRNA-1:three_prime_utr;Parent=Msa0172480-mRNA-1

Gene Sequence

>Msa0172480

ATGTCTCCCACCGCCGCTGCTCAGACCAAGCCCAAGCCCAAGCCCAAGAAAACCGCTGCAGCAAAGAAGCCTCTCTCTCATCCTACCTACGCTGAGATGATAACGGAAGCAATTGTGAGTTTGAAAGAAAGAACTGGTTCAAGCCAACACGCGATAACGAAATTCATCGAAGAGAAGCATAAGGATTTATCTCCAACATTCCGCAAACTCATTCTTCTTCATCTGAAGAAATCTGTGGCTTCTGGCAAGCTCGTGAAGGTGAAAAACTCCTTCAAAATCGCTCCGGCAGCGGCGAAAACTGCTCCGGTGAAGGCCGCTACTGCTCCTGCTAAGAAGGCTAAGGCTGTTACGAAGCCAGCCGGTAAGGCTGCAACTAAGCCGAAGGCGAAAGCTGCTGTGAAGCCGAAAGCTGCCGCAAAGCCAAAAGCAGCGGCGAAGCCTAAAGCTGTTGTGAAGCCGAAAGCGAAGAGTGTTAAGGGTACGCCTGTGAAGAAAGCGGCGAAGAAGGTGGTTGCGAAGAAGCCGAAGAGTGTTAAGACTCCGGTGAAGAAAGCTAAGAAGTGA

Protein sequence

>Msa0172480

MSPTAAAQTKPKPKPKKTAAAKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGKLVKVKNSFKIAPAAAKTAPVKAATAPAKKAKAVTKPAGKAATKPKAKAAVKPKAAAKPKAAAKPKAVVKPKAKSVKGTPVKKAAKKVVAKKPKSVKTPVKKAKK*