AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039440 MtrunA17_Chr7g0272191 87.926 323 6 3 1 291 1 322 0.0 563
Msa1039440 MtrunA17_Chr1g0207341 46.746 169 83 3 105 272 153 315 4.23e-44 154
Msa1039440 MtrunA17_Chr4g0055551 46.667 180 89 3 93 272 90 262 3.12e-34 126
Msa1039440 MtrunA17_Chr4g0038261 40.397 151 79 2 107 257 45 184 2.68e-26 103
Msa1039440 MtrunA17_Chr7g0251451 33.889 180 100 4 101 280 73 233 3.76e-24 99.4
Msa1039440 MtrunA17_Chr5g0409311 31.325 166 99 3 107 272 88 238 2.61e-21 91.3
Msa1039440 MtrunA17_Chr4g0034751 35.152 165 96 3 107 271 99 252 4.66e-21 90.5
Msa1039440 MtrunA17_Chr7g0270061 32.099 162 95 3 110 271 111 257 1.95e-19 86.3
Msa1039440 MtrunA17_Chr1g0194601 30.435 184 105 5 94 271 94 260 4.43e-18 82.4
Msa1039440 MtrunA17_Chr4g0056771 32.738 168 94 5 107 272 95 245 1.42e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039440 AT1G09130.2 60.909 330 82 8 1 286 1 327 8.35e-131 375
Msa1039440 AT1G09130.1 60.909 330 82 8 1 286 1 327 8.35e-131 375
Msa1039440 AT1G09130.3 60.725 331 82 9 1 285 1 329 1.45e-130 375
Msa1039440 AT1G49970.1 46.857 175 86 3 99 272 163 331 1.82e-44 155
Msa1039440 AT4G17040.1 45.556 180 91 3 93 272 91 263 6.83e-44 152
Msa1039440 AT5G23140.1 39.073 151 81 2 107 257 48 187 5.17e-26 103
Msa1039440 AT5G45390.1 32.778 180 106 3 93 272 65 229 3.08e-24 99.8
Msa1039440 AT1G66670.1 29.921 254 136 7 49 280 6 239 8.06e-23 96.3
Msa1039440 AT1G11750.2 30.508 236 142 5 43 271 47 267 1.34e-21 92.4
Msa1039440 AT1G02560.1 32.609 184 101 5 94 271 97 263 4.12e-21 91.3
Msa1039440 AT1G11750.1 34.132 167 99 3 105 271 94 249 4.17e-21 90.9
Msa1039440 AT1G12410.1 31.250 176 101 6 107 280 89 246 2.30e-15 75.1
Msa1039440 ATCG00670.1 25.595 168 111 4 107 272 22 177 2.13e-13 68.2

Find 148 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGGGTTGAAAGGAATTT+TGG 0.200171 7_1:+76661879 None:intergenic
AAACCTCCAACACTGGTATT+AGG 0.214162 7_1:+76656720 None:intergenic
TTGTAGATAAAGTGTAAAAT+AGG 0.214774 7_1:-76657124 Msa1039440:three_prime_UTR
TAAATATATATTGGTTCTTT+AGG 0.217872 7_1:+76661040 None:intergenic
TTTGCATATGCTTAGATTAT+AGG 0.220477 7_1:+76656375 None:intergenic
AGCAGCGACAGAAGCGAGTT+TGG 0.261043 7_1:+76661843 None:intergenic
ATTGACTAGATGTGCCAAAA+TGG 0.271930 7_1:+76656979 None:intergenic
GAAGGGTTAAGAAGTGTTTC+GGG 0.274893 7_1:+76661814 None:intergenic
GAAACCAAAAGTACATTTAA+AGG 0.283330 7_1:+76657169 None:intergenic
CAGCCTCGTGTTCCATCGTC+TGG 0.284212 7_1:-76659788 Msa1039440:CDS
AGATGAAGCGGGCATGGATA+TGG 0.284858 7_1:+76661963 None:intergenic
CTGCATCATTGCATCATAAA+TGG 0.285811 7_1:+76660844 None:intergenic
CAGGTCAGGAGGTGGTCTTT+TGG 0.291985 7_1:+76661484 None:intergenic
AAGTTTGAGATAACCCATTT+TGG 0.295974 7_1:-76656993 Msa1039440:three_prime_UTR
CCTTCCCGCTTTAAATAATC+TGG 0.304365 7_1:-76657017 Msa1039440:three_prime_UTR
AACACTGTTCTCAGATTCTT+TGG 0.305404 7_1:-76657667 Msa1039440:intron
AGTACCTTTAAATGTACTTT+TGG 0.334249 7_1:-76657173 Msa1039440:three_prime_UTR
GCGTGGCCAGGAGAAGATTA+TGG 0.338584 7_1:-76657645 Msa1039440:CDS
AGAGTTCTCAATCTTCTTGT+TGG 0.343709 7_1:+76661928 None:intergenic
GCTTGATATCCTTGTCTACT+TGG 0.344292 7_1:-76656886 Msa1039440:three_prime_UTR
TTGGAGAGAAATGGGTCGTT+AGG 0.357290 7_1:+76661862 None:intergenic
CTATGCGGTCATATAGTGTT+TGG 0.358467 7_1:-76656541 Msa1039440:three_prime_UTR
GGATTTGGCTATTGCGTTAA+CGG 0.359341 7_1:+76661900 None:intergenic
AACCTCCAACACTGGTATTA+GGG 0.361530 7_1:+76656721 None:intergenic
AGAAGGGTTAAGAAGTGTTT+CGG 0.362390 7_1:+76661813 None:intergenic
GAATTGATGTAAATATATAT+TGG 0.368323 7_1:+76661031 None:intergenic
GCTCCCCTGGGAATAAATTC+TGG 0.379355 7_1:-76657334 Msa1039440:three_prime_UTR
ATTGCAGGTTACAAACGTTC+TGG 0.379363 7_1:-76656745 Msa1039440:three_prime_UTR
ATTCTGGAGATTGCAGTATA+TGG 0.381159 7_1:-76657318 Msa1039440:three_prime_UTR
TCAAGCCTGTCTATTACTTT+CGG 0.388280 7_1:-76659955 Msa1039440:CDS
AGCAGAAGCGATGGCAGGTC+AGG 0.391243 7_1:+76661470 None:intergenic
CGTTCCTTCTCGGGATGATC+GGG 0.398903 7_1:-76657618 Msa1039440:CDS
TAGTTGTGTTGCTGCATTGC+AGG 0.402036 7_1:-76656760 Msa1039440:three_prime_UTR
TGAAAGCTGTAGTGCATAGA+AGG 0.404696 7_1:-76656602 Msa1039440:three_prime_UTR
AGGTTTAAATTATTCAGAAT+TGG 0.405643 7_1:+76657271 None:intergenic
GCAGTATATGGTGCAGTGTT+TGG 0.406699 7_1:-76657306 Msa1039440:three_prime_UTR
CATTTGGTTCATACAGGAAC+TGG 0.408698 7_1:-76657077 Msa1039440:three_prime_UTR
GCCTGTCTATTACTTTCGGC+AGG 0.410127 7_1:-76659951 Msa1039440:CDS
TGAATAAGAACATCACTTGC+AGG 0.413533 7_1:+76659758 None:intergenic
GAGACATAATAAGCAACATT+TGG 0.416885 7_1:-76657093 Msa1039440:three_prime_UTR
TATGGCAGACGTTCCTTCTC+GGG 0.420882 7_1:-76657627 Msa1039440:CDS
GAAGCGAGTTTGGAGAGAAA+TGG 0.422524 7_1:+76661853 None:intergenic
CAGATAAACACAGTTGCTCT+TGG 0.426284 7_1:-76659990 Msa1039440:CDS
CACATCATCTATGTAGTTCA+TGG 0.433069 7_1:+76657377 None:intergenic
TCAGATTCTTTGGCGTGGCC+AGG 0.433756 7_1:-76657657 Msa1039440:intron
GGCCCTAATACCAGTGTTGG+AGG 0.437142 7_1:-76656723 Msa1039440:three_prime_UTR
TAAAGTGTAAAATAGGGATA+GGG 0.437378 7_1:-76657117 Msa1039440:three_prime_UTR
TGTAGATAAAGTGTAAAATA+GGG 0.445387 7_1:-76657123 Msa1039440:three_prime_UTR
TTATGGCAGACGTTCCTTCT+CGG 0.451725 7_1:-76657628 Msa1039440:CDS
CGGGAGTGGCCATGAGTTGA+GGG 0.452837 7_1:+76661749 None:intergenic
TAAAAGCTCCTATGCTCCCC+TGG 0.453794 7_1:-76657347 Msa1039440:three_prime_UTR
TCAGTTGGTGCCGGCTGTCA+CGG 0.455462 7_1:-76661104 Msa1039440:intron
TTTGATGGATGGAGTGTAAA+GGG 0.458941 7_1:-76657430 Msa1039440:intron
TCTCGGGATGATCGGGAAAA+CGG 0.462487 7_1:-76657611 Msa1039440:CDS
CACACGACACTGAAAACTGC+TGG 0.462728 7_1:+76662032 None:intergenic
AGATTATCGGGAGAAGAAGA+AGG 0.463099 7_1:+76661796 None:intergenic
AAGCAACATTTGGTTCATAC+AGG 0.468224 7_1:-76657083 Msa1039440:three_prime_UTR
TTACTTTCGGCAGGGACTAA+AGG 0.469894 7_1:-76659942 Msa1039440:CDS
TAAACAGAAACCTCCAACAC+TGG 0.471633 7_1:+76656713 None:intergenic
GATGAAGCGGGCATGGATAT+GGG 0.472260 7_1:+76661964 None:intergenic
ACGTTCCTTCTCGGGATGAT+CGG 0.477175 7_1:-76657619 Msa1039440:CDS
TTGGAATAACTTACTTGAGC+GGG 0.478936 7_1:+76661730 None:intergenic
TTGCAGGTTACAAACGTTCT+GGG 0.482608 7_1:-76656744 Msa1039440:three_prime_UTR
TGGAGAGAAATGGGTCGTTA+GGG 0.483857 7_1:+76661863 None:intergenic
ATAAAGTGTAAAATAGGGAT+AGG 0.488433 7_1:-76657118 Msa1039440:three_prime_UTR
TTCTACCTATCAGTTGGTGC+CGG 0.488819 7_1:-76661113 Msa1039440:intron
GGACACTCTAGTTAAACTAT+TGG 0.489542 7_1:-76658271 Msa1039440:CDS
ATAAATTTGACTAACCTCCT+TGG 0.490651 7_1:+76659733 None:intergenic
AAGCGAGTTTGGAGAGAAAT+GGG 0.491275 7_1:+76661854 None:intergenic
AAGAAGTTCAACACAGGAGT+TGG 0.493357 7_1:+76657043 None:intergenic
AAAGTGTAAAATAGGGATAG+GGG 0.500077 7_1:-76657116 Msa1039440:three_prime_UTR
TTGACTAGATGTGCCAAAAT+GGG 0.500695 7_1:+76656980 None:intergenic
GACTAGGGTGTTCCAAGAAA+AGG 0.506806 7_1:+76656912 None:intergenic
CTTTAGGAGCCATCCACTGC+AGG 0.507394 7_1:+76661056 None:intergenic
AGGATATCAAGCTGTGACTA+GGG 0.508995 7_1:+76656897 None:intergenic
AACACGAGGCTGCTGAATCA+TGG 0.513570 7_1:+76659799 None:intergenic
TTTCGATTCCCCTCAACTCA+TGG 0.513737 7_1:-76661758 Msa1039440:CDS
ATAACTTACTTGAGCGGGAG+TGG 0.516152 7_1:+76661735 None:intergenic
AAGGATATCAAGCTGTGACT+AGG 0.517609 7_1:+76656896 None:intergenic
GATCGGGAAAACGGTACTGC+TGG 0.517926 7_1:-76657602 Msa1039440:CDS
CCCTGCCGAAAGTAATAGAC+AGG 0.518343 7_1:+76659950 None:intergenic
TATATTTACATCAATTCCAC+CGG 0.519889 7_1:-76661025 Msa1039440:CDS
ATCTCCAGAATTTATTCCCA+GGG 0.524479 7_1:+76657330 None:intergenic
ATAATCTAAGCATATGCAAA+CGG 0.524917 7_1:-76656372 Msa1039440:three_prime_UTR
ACGAGTAGATGAAGCGGGCA+TGG 0.525906 7_1:+76661957 None:intergenic
AGAAGCGATGGCAGGTCAGG+AGG 0.526440 7_1:+76661473 None:intergenic
ACCGGGACTACGCGGGCGGA+TGG 0.530411 7_1:-76661007 Msa1039440:CDS
GTTGCTCTTGGAGCTGCTGT+AGG 0.531091 7_1:-76659978 Msa1039440:CDS
AACGGTCGAATTGTTTACAT+TGG 0.533409 7_1:-76661446 Msa1039440:CDS
GCTTATGTTCCTGCAGTGGA+TGG 0.533988 7_1:-76661065 Msa1039440:CDS
ATTTATTCCCAGGGGAGCAT+AGG 0.534594 7_1:+76657339 None:intergenic
TACGCGGGCGGATGGAGAAA+CGG 0.537114 7_1:-76660999 Msa1039440:intron
CTTGCCAGATTATTTAAAGC+GGG 0.538136 7_1:+76657013 None:intergenic
TATATGACGCCACATGCAAA+AGG 0.539881 7_1:-76659912 Msa1039440:intron
GCGGGAGTGGCCATGAGTTG+AGG 0.542903 7_1:+76661748 None:intergenic
ACACGACACTGAAAACTGCT+GGG 0.543618 7_1:+76662033 None:intergenic
GCAATCAAATTTCATGCAGA+AGG 0.546251 7_1:+76657406 None:intergenic
GATTATCGGGAGAAGAAGAA+GGG 0.548240 7_1:+76661797 None:intergenic
CGTCTGCCATAATCTTCTCC+TGG 0.548423 7_1:+76657639 None:intergenic
CCAGATTATTTAAAGCGGGA+AGG 0.549093 7_1:+76657017 None:intergenic
AATGGGTCGTTAGGGTTGAA+AGG 0.550428 7_1:+76661871 None:intergenic
AGCCTCGTGTTCCATCGTCT+GGG 0.552354 7_1:-76659787 Msa1039440:CDS
AATCTCCAGAATTTATTCCC+AGG 0.553970 7_1:+76657329 None:intergenic
CTGGGCCCTAATACCAGTGT+TGG 0.555779 7_1:-76656726 Msa1039440:three_prime_UTR
TAAAGAATGTCGAGTGCAGT+AGG 0.560401 7_1:-76656793 Msa1039440:three_prime_UTR
CTGCCATCGCTTCTGCTCAA+CGG 0.560428 7_1:-76661464 Msa1039440:CDS
CGTTGAGCAGAAGCGATGGC+AGG 0.562450 7_1:+76661465 None:intergenic
TGATGTTCTTATTCATGCCA+AGG 0.567517 7_1:-76659750 Msa1039440:CDS
GCTGTAGTGCATAGAAGGCA+TGG 0.570295 7_1:-76656597 Msa1039440:three_prime_UTR
AGCGATGGCAGGTCAGGAGG+TGG 0.571658 7_1:+76661476 None:intergenic
CAATTCCACCGGGACTACGC+GGG 0.575076 7_1:-76661014 Msa1039440:CDS
AAAAGCTCCTATGCTCCCCT+GGG 0.583619 7_1:-76657346 Msa1039440:three_prime_UTR
TACTCGAAAGCATGTCGCCA+TGG 0.584471 7_1:+76661987 None:intergenic
ATAACAAGCTCCGTGACAGC+CGG 0.585297 7_1:+76661094 None:intergenic
GTGAAACGAGTAGATGAAGC+GGG 0.586595 7_1:+76661952 None:intergenic
TTCCACCGGGACTACGCGGG+CGG 0.591091 7_1:-76661011 Msa1039440:CDS
CGACCGTTGAGCAGAAGCGA+TGG 0.597098 7_1:+76661461 None:intergenic
AGAAAACAATTGCATGTCAG+AGG 0.597912 7_1:+76656835 None:intergenic
GTCTGTTAACCAAGTAGACA+AGG 0.601739 7_1:+76656877 None:intergenic
CCTGTCTATTACTTTCGGCA+GGG 0.610388 7_1:-76659950 Msa1039440:CDS
GTCAAGAAAGTTACCATGGG+AGG 0.611206 7_1:+76656397 None:intergenic
TGTTCTCAGATTCTTTGGCG+TGG 0.611853 7_1:-76657662 Msa1039440:intron
ACTTGCCAGATTATTTAAAG+CGG 0.619120 7_1:+76657012 None:intergenic
AGGGTTAAGAAGTGTTTCGG+GGG 0.623527 7_1:+76661816 None:intergenic
AACACTATATGACCGCATAG+AGG 0.626620 7_1:+76656544 None:intergenic
AAGTGTAAAATAGGGATAGG+GGG 0.629668 7_1:-76657115 Msa1039440:three_prime_UTR
CAGAGCTTATGTTCCTGCAG+TGG 0.631210 7_1:-76661069 Msa1039440:CDS
ATCCGCCCGCGTAGTCCCGG+TGG 0.636404 7_1:+76661009 None:intergenic
GCAGGTCTCAACCCAGACGA+TGG 0.646391 7_1:+76659776 None:intergenic
TAGGTGGCGATGGAGACAGA+AGG 0.647132 7_1:-76660872 Msa1039440:CDS
ATAGGTCAAGAAAGTTACCA+TGG 0.647136 7_1:+76656393 None:intergenic
TAGGTCAAGAAAGTTACCAT+GGG 0.647262 7_1:+76656394 None:intergenic
AACCCAGACGATGGAACACG+AGG 0.649490 7_1:+76659785 None:intergenic
ATTGGAATAACTTACTTGAG+CGG 0.652746 7_1:+76661729 None:intergenic
TCAATTCCACCGGGACTACG+CGG 0.654300 7_1:-76661015 Msa1039440:CDS
AAGGGTTAAGAAGTGTTTCG+GGG 0.654420 7_1:+76661815 None:intergenic
CACGACACTGAAAACTGCTG+GGG 0.666303 7_1:+76662034 None:intergenic
AGGTTTAAGAAGTTCAACAC+AGG 0.669570 7_1:+76657037 None:intergenic
TTGATGGATGGAGTGTAAAG+GGG 0.673185 7_1:-76657429 Msa1039440:intron
ATATTTACATCAATTCCACC+GGG 0.676291 7_1:-76661024 Msa1039440:CDS
TGTTCTTATTCATGCCAAGG+AGG 0.676497 7_1:-76659747 Msa1039440:intron
AGTGAAACGAGTAGATGAAG+CGG 0.677719 7_1:+76661951 None:intergenic
TCGAAAGCATGTCGCCATGG+TGG 0.687719 7_1:+76661990 None:intergenic
GGGAGTGGCCATGAGTTGAG+GGG 0.690706 7_1:+76661750 None:intergenic
TCTCCAGAATTTATTCCCAG+GGG 0.696592 7_1:+76657331 None:intergenic
AACGTGCTCATTCCTCTATG+CGG 0.705287 7_1:-76656556 Msa1039440:three_prime_UTR
GTGCAACAAAATCACCACCA+TGG 0.710343 7_1:-76662004 Msa1039440:exon
AATGATGCAGATGAAAACTG+AGG 0.775475 7_1:-76660831 Msa1039440:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAATAAAATAAA+AGG + chr7_1:76657255-76657274 None:intergenic 0.0%
!!! TTTTATTTTATTTTATTTTA+TGG - chr7_1:76657254-76657273 Msa1039440:three_prime_UTR 0.0%
!!! TTTATTTTATTTTATTTTAT+GGG - chr7_1:76657255-76657274 Msa1039440:three_prime_UTR 0.0%
!!! TAATATTTTGAAATTTATAC+AGG + chr7_1:76661181-76661200 None:intergenic 10.0%
!!! TATTGTCTTATTATTATTTT+TGG - chr7_1:76661205-76661224 Msa1039440:intron 10.0%
!!! TTAAACATTTTTAAAAATCA+AGG - chr7_1:76661750-76661769 Msa1039440:CDS 10.0%
!!! TAAACATTTTTAAAAATCAA+GGG - chr7_1:76661751-76661770 Msa1039440:CDS 10.0%
!! TTAATTATTATTATCTTCTG+TGG - chr7_1:76656876-76656895 Msa1039440:three_prime_UTR 15.0%
!! TTGAATGTAATTAAATGTTT+CGG - chr7_1:76657064-76657083 Msa1039440:three_prime_UTR 15.0%
!!! TAAATATATATTGGTTCTTT+AGG + chr7_1:76657392-76657411 None:intergenic 15.0%
!! GAATTGATGTAAATATATAT+TGG + chr7_1:76657401-76657420 None:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+GGG + chr7_1:76658070-76658089 None:intergenic 15.0%
!! ATAAGTTAGTAGTATTAATT+AGG + chr7_1:76658071-76658090 None:intergenic 15.0%
!! TTTAATACATATACAAACAA+AGG - chr7_1:76658112-76658131 Msa1039440:intron 15.0%
!!! TATTGTATTTTAAAATAGTG+TGG + chr7_1:76658841-76658860 None:intergenic 15.0%
!!! AATTATTATTTTTTGGCAAA+AGG + chr7_1:76659292-76659311 None:intergenic 15.0%
!!! ACTTTTTAATTTTAGTTAGT+GGG + chr7_1:76659316-76659335 None:intergenic 15.0%
!! GATATTTAAAAACAAATAAG+TGG + chr7_1:76659381-76659400 None:intergenic 15.0%
!!! TTTCTTGAATTTCTAGAAAT+TGG + chr7_1:76656721-76656740 None:intergenic 20.0%
!!! CATTTATTGTTTTTGACTTT+AGG - chr7_1:76657538-76657557 Msa1039440:intron 20.0%
!!! ATATGATGACACAATTATTT+TGG - chr7_1:76657704-76657723 Msa1039440:intron 20.0%
!!! TATGATGACACAATTATTTT+GGG - chr7_1:76657705-76657724 Msa1039440:intron 20.0%
!! TAGTTAGTAGTATTAATTAG+GGG + chr7_1:76658014-76658033 None:intergenic 20.0%
!! GTAGTTAGTAGTATTAATTA+GGG + chr7_1:76658015-76658034 None:intergenic 20.0%
!! AGTAGTTAGTAGTATTAATT+AGG + chr7_1:76658016-76658035 None:intergenic 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr7_1:76658069-76658088 None:intergenic 20.0%
!! TTAAATCAAAAACAAATTCC+AGG + chr7_1:76658258-76658277 None:intergenic 20.0%
!! ACAAAAACATAGAAACAATT+GGG + chr7_1:76658554-76658573 None:intergenic 20.0%
!! AACAAAAACATAGAAACAAT+TGG + chr7_1:76658555-76658574 None:intergenic 20.0%
!!! AGTGGGTAATTATTATTTTT+TGG + chr7_1:76659299-76659318 None:intergenic 20.0%
!!! CACTTTTTAATTTTAGTTAG+TGG + chr7_1:76659317-76659336 None:intergenic 20.0%
!! TGGATATCATATTTATTCAA+TGG - chr7_1:76660220-76660239 Msa1039440:intron 20.0%
!!! TTATTGGTTGAAATACATAT+AGG - chr7_1:76660473-76660492 Msa1039440:intron 20.0%
!!! ATAGATTTTAGTTTCTCTTT+TGG - chr7_1:76660864-76660883 Msa1039440:CDS 20.0%
!! AGGTTTAAATTATTCAGAAT+TGG + chr7_1:76661161-76661180 None:intergenic 20.0%
!!! AATTATATTCTTTTCTTAGC+AGG - chr7_1:76661943-76661962 Msa1039440:CDS 20.0%
!!! TCAAAACTTTTGAATGAAAA+AGG + chr7_1:76662097-76662116 None:intergenic 20.0%
! ATCCAAAAAAGGAAGATTAT+CGG + chr7_1:76656649-76656668 None:intergenic 25.0%
! GAATCGAAAATATCCAAAAA+AGG + chr7_1:76656660-76656679 None:intergenic 25.0%
! TTTAGAAGTAGTTTCGATTA+AGG - chr7_1:76656773-76656792 Msa1039440:three_prime_UTR 25.0%
! AATTGAGTACTTAACATCTT+TGG - chr7_1:76656824-76656843 Msa1039440:three_prime_UTR 25.0%
! TATATTTACATCAATTCCAC+CGG - chr7_1:76657404-76657423 Msa1039440:three_prime_UTR 25.0%
! ACATTTCAATATAACAAGCA+AGG + chr7_1:76657469-76657488 None:intergenic 25.0%
!!! TTATTGTTTTTGACTTTAGG+TGG - chr7_1:76657541-76657560 Msa1039440:intron 25.0%
! GGACAAAAATAAAGTCAAAT+GGG + chr7_1:76657933-76657952 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr7_1:76657968-76657987 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr7_1:76657969-76657988 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr7_1:76658059-76658078 None:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG - chr7_1:76658121-76658140 Msa1039440:intron 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG - chr7_1:76658194-76658213 Msa1039440:intron 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG - chr7_1:76658195-76658214 Msa1039440:intron 25.0%
!!! GTACTTTTAAAGAATTGTGA+TGG - chr7_1:76658288-76658307 Msa1039440:CDS 25.0%
!!! AAAGAATTGTGATGGATAAT+AGG - chr7_1:76658296-76658315 Msa1039440:intron 25.0%
!! CAGATTTGATACTTTTCTAT+TGG - chr7_1:76658595-76658614 Msa1039440:intron 25.0%
! TCATTCCCAATATAAAAACA+CGG + chr7_1:76658731-76658750 None:intergenic 25.0%
! AAATGTGCTCAAATATAGTA+AGG + chr7_1:76658877-76658896 None:intergenic 25.0%
! ACAAATATCCTCCATATATT+TGG - chr7_1:76659010-76659029 Msa1039440:intron 25.0%
! AACTATCCATTCCAAATATA+TGG + chr7_1:76659024-76659043 None:intergenic 25.0%
! TTAGAGAAAAAAACTACACA+TGG + chr7_1:76659058-76659077 None:intergenic 25.0%
!! TTTTCTCTAATTTGACTCTA+AGG - chr7_1:76659068-76659087 Msa1039440:intron 25.0%
!! TAATCTAGCTTATAGAGTAT+TGG - chr7_1:76659110-76659129 Msa1039440:intron 25.0%
! TCGTATTTCAGCTAAATTAT+TGG - chr7_1:76659447-76659466 Msa1039440:intron 25.0%
! CTATAAACATTACATGTAGT+TGG - chr7_1:76659530-76659549 Msa1039440:intron 25.0%
! AACATATTAACATTAGAGTG+AGG + chr7_1:76659601-76659620 None:intergenic 25.0%
! AAGGTTTATGAAAAATGTTC+AGG + chr7_1:76660021-76660040 None:intergenic 25.0%
! AATAGATAGATGTACAGTAA+AGG + chr7_1:76660040-76660059 None:intergenic 25.0%
! AAGTAAGTGCTTATTTACAT+CGG - chr7_1:76660376-76660395 Msa1039440:intron 25.0%
! TTATTGGGTGAAATACATTT+GGG + chr7_1:76660540-76660559 None:intergenic 25.0%
!! GTACTTCAAAAACATGTTTT+AGG + chr7_1:76661241-76661260 None:intergenic 25.0%
!! AGTACCTTTAAATGTACTTT+TGG - chr7_1:76661256-76661275 Msa1039440:intron 25.0%
!! GAAACCAAAAGTACATTTAA+AGG + chr7_1:76661263-76661282 None:intergenic 25.0%
! TTTGCATATGCTTAGATTAT+AGG + chr7_1:76662057-76662076 None:intergenic 25.0%
! ATAATCTAAGCATATGCAAA+CGG - chr7_1:76662057-76662076 Msa1039440:five_prime_UTR 25.0%
! GTTGAAAGGAATTTTGGATT+TGG + chr7_1:76656547-76656566 None:intergenic 30.0%
TCCAAAAAAGGAAGATTATC+GGG + chr7_1:76656648-76656667 None:intergenic 30.0%
ATTGGAATAACTTACTTGAG+CGG + chr7_1:76656703-76656722 None:intergenic 30.0%
TAGTTTCGATTAAGGTTAGA+CGG - chr7_1:76656781-76656800 Msa1039440:three_prime_UTR 30.0%
! GTAATTAAATGTTTCGGTGT+CGG - chr7_1:76657070-76657089 Msa1039440:three_prime_UTR 30.0%
AGTTGTATTATTACCATGAC+AGG - chr7_1:76657175-76657194 Msa1039440:three_prime_UTR 30.0%
! ATCAATTCAGAGCATTAAGA+GGG + chr7_1:76657228-76657247 None:intergenic 30.0%
! AATCAATTCAGAGCATTAAG+AGG + chr7_1:76657229-76657248 None:intergenic 30.0%
ATATTTACATCAATTCCACC+GGG - chr7_1:76657405-76657424 Msa1039440:three_prime_UTR 30.0%
!!! TTTTGGGTTGCTTTGATTTA+TGG - chr7_1:76657721-76657740 Msa1039440:intron 30.0%
AACATTACCACATCAACTAT+TGG - chr7_1:76657778-76657797 Msa1039440:intron 30.0%
ACATTACCACATCAACTATT+GGG - chr7_1:76657779-76657798 Msa1039440:intron 30.0%
GAGCGAGTAAAATTTAATTG+TGG + chr7_1:76657892-76657911 None:intergenic 30.0%
CAAAAATAAAGTCAAATGGG+TGG + chr7_1:76657930-76657949 None:intergenic 30.0%
GGGACAAAAATAAAGTCAAA+TGG + chr7_1:76657934-76657953 None:intergenic 30.0%
TGAAAAGGGGTTTAGATTTA+GGG + chr7_1:76657954-76657973 None:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG + chr7_1:76657955-76657974 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr7_1:76657967-76657986 None:intergenic 30.0%
! TATTAATTAGGGGCATGTTT+AGG + chr7_1:76658004-76658023 None:intergenic 30.0%
GAAATGTGAAAAAAGCAAAG+GGG - chr7_1:76658196-76658215 Msa1039440:intron 30.0%
AAATGTGAAAAAAGCAAAGG+GGG - chr7_1:76658197-76658216 Msa1039440:intron 30.0%
GATGAACAAATCGCTTAAAA+AGG + chr7_1:76658362-76658381 None:intergenic 30.0%
TCAAATCTGTGAGGAATTAA+AGG + chr7_1:76658584-76658603 None:intergenic 30.0%
!! AGAAAAGTATCAAATCTGTG+AGG + chr7_1:76658593-76658612 None:intergenic 30.0%
ATAAATTTGACTAACCTCCT+TGG + chr7_1:76658699-76658718 None:intergenic 30.0%
!! CTACACCGTGTTTTTATATT+GGG - chr7_1:76658723-76658742 Msa1039440:intron 30.0%
!!! TTTTAAAATAGTGTGGCAGA+TGG + chr7_1:76658834-76658853 None:intergenic 30.0%
TCAAATTTACCAGCTGATTA+TGG + chr7_1:76658932-76658951 None:intergenic 30.0%
ATATGGAGGATATTTGTAAC+TGG + chr7_1:76659007-76659026 None:intergenic 30.0%
TATCCTCCATATATTTGGAA+TGG - chr7_1:76659015-76659034 Msa1039440:intron 30.0%
TATCCATTCCAAATATATGG+AGG + chr7_1:76659021-76659040 None:intergenic 30.0%
TCTCAAAAAAAGCTATAAGC+TGG + chr7_1:76659194-76659213 None:intergenic 30.0%
AATTAAGATAACAACGTGAG+AGG + chr7_1:76659254-76659273 None:intergenic 30.0%
ATTTAGCTGAAATACGAAGT+TGG + chr7_1:76659444-76659463 None:intergenic 30.0%
ATTACACATAAAACCACTAC+AGG - chr7_1:76659660-76659679 Msa1039440:intron 30.0%
TGTAATGGTTTAAACCTTCA+AGG + chr7_1:76659726-76659745 None:intergenic 30.0%
! TTGTCACTTCTTTCTTGTAA+TGG + chr7_1:76659741-76659760 None:intergenic 30.0%
AGAAAGAAGTGACAAAGAAA+AGG - chr7_1:76659746-76659765 Msa1039440:intron 30.0%
CAAAGATTTAGAGACATAGT+TGG + chr7_1:76660103-76660122 None:intergenic 30.0%
! TTACCATCACCTGAAAATTT+TGG + chr7_1:76660134-76660153 None:intergenic 30.0%
! ACTCACATTTTCTGTATGTT+TGG + chr7_1:76660184-76660203 None:intergenic 30.0%
AAATGTGAGTATCTTGCATT+AGG - chr7_1:76660194-76660213 Msa1039440:intron 30.0%
ATATTTATTCAATGGACACG+AGG - chr7_1:76660228-76660247 Msa1039440:intron 30.0%
TATTTATTCAATGGACACGA+GGG - chr7_1:76660229-76660248 Msa1039440:intron 30.0%
ATATTACATGGACGCATTAT+TGG - chr7_1:76660329-76660348 Msa1039440:intron 30.0%
! CATTATTGGCTAAGGAATTT+GGG - chr7_1:76660343-76660362 Msa1039440:intron 30.0%
! ATTATTGGCTAAGGAATTTG+GGG - chr7_1:76660344-76660363 Msa1039440:intron 30.0%
AGTAAGTGCTTATTTACATC+GGG - chr7_1:76660377-76660396 Msa1039440:intron 30.0%
CTTATTGGGTGAAATACATT+TGG + chr7_1:76660541-76660560 None:intergenic 30.0%
AAATATGTTACTGCGAAATG+TGG - chr7_1:76660927-76660946 Msa1039440:intron 30.0%
!!! TCTCACTTGTTTTTGATGAA+TGG - chr7_1:76660960-76660979 Msa1039440:intron 30.0%
GAGACATAATAAGCAACATT+TGG - chr7_1:76661336-76661355 Msa1039440:intron 30.0%
ACTTGCCAGATTATTTAAAG+CGG + chr7_1:76661420-76661439 None:intergenic 30.0%
!! AAGTTTGAGATAACCCATTT+TGG - chr7_1:76661436-76661455 Msa1039440:intron 30.0%
TTTAAAAATCAAGGGCTCAT+AGG - chr7_1:76661759-76661778 Msa1039440:CDS 30.0%
! GTATGAAGCGTGATTGTTTT+TGG + chr7_1:76656359-76656378 None:intergenic 35.0%
AGAGTTCTCAATCTTCTTGT+TGG + chr7_1:76656504-76656523 None:intergenic 35.0%
! GTTAGGGTTGAAAGGAATTT+TGG + chr7_1:76656553-76656572 None:intergenic 35.0%
!! AGAAGGGTTAAGAAGTGTTT+CGG + chr7_1:76656619-76656638 None:intergenic 35.0%
!!! TCCCGATAATCTTCCTTTTT+TGG - chr7_1:76656644-76656663 Msa1039440:three_prime_UTR 35.0%
TTGGAATAACTTACTTGAGC+GGG + chr7_1:76656702-76656721 None:intergenic 35.0%
AACGGTCGAATTGTTTACAT+TGG - chr7_1:76656983-76657002 Msa1039440:three_prime_UTR 35.0%
ATGCACAATTGAACACTTAC+AGG + chr7_1:76657013-76657032 None:intergenic 35.0%
! TTTGAAACTCAATCCTGTCA+TGG + chr7_1:76657191-76657210 None:intergenic 35.0%
!! TCTTGTTTCTACCTATCAGT+TGG - chr7_1:76657310-76657329 Msa1039440:three_prime_UTR 35.0%
CTGCATCATTGCATCATAAA+TGG + chr7_1:76657588-76657607 None:intergenic 35.0%
AATGATGCAGATGAAAACTG+AGG - chr7_1:76657598-76657617 Msa1039440:CDS 35.0%
CAAATGGGTGGTTAGATATA+GGG + chr7_1:76657918-76657937 None:intergenic 35.0%
TCAAATGGGTGGTTAGATAT+AGG + chr7_1:76657919-76657938 None:intergenic 35.0%
AATGTGAAAAAAGCAAAGGG+GGG - chr7_1:76658198-76658217 Msa1039440:intron 35.0%
GGTTAATTATTTGTGTGCTC+AGG - chr7_1:76658317-76658336 Msa1039440:intron 35.0%
AATATCATGTCCCACGTATT+TGG - chr7_1:76658401-76658420 Msa1039440:intron 35.0%
TCAAGCCTGTCTATTACTTT+CGG - chr7_1:76658474-76658493 Msa1039440:intron 35.0%
TGAATAAGAACATCACTTGC+AGG + chr7_1:76658674-76658693 None:intergenic 35.0%
TGATGTTCTTATTCATGCCA+AGG - chr7_1:76658679-76658698 Msa1039440:intron 35.0%
!! GCTACACCGTGTTTTTATAT+TGG - chr7_1:76658722-76658741 Msa1039440:intron 35.0%
!! TTTGACTCTAAGGCTATGTT+TGG - chr7_1:76659078-76659097 Msa1039440:intron 35.0%
TTGATCAAATGAGACGTGTT+TGG - chr7_1:76659151-76659170 Msa1039440:intron 35.0%
AGAACACTAGAAGAATGCAA+TGG + chr7_1:76659354-76659373 None:intergenic 35.0%
AAAAGCCATGATGCAATGTT+TGG - chr7_1:76659412-76659431 Msa1039440:intron 35.0%
! ATTACCGATTGTGCATAGAT+GGG + chr7_1:76659488-76659507 None:intergenic 35.0%
ACTCATTTCTAAACCTGTAG+TGG + chr7_1:76659676-76659695 None:intergenic 35.0%
AAGAAGTGACAAAGAAAAGG+AGG - chr7_1:76659749-76659768 Msa1039440:CDS 35.0%
AGAAGTGACAAAGAAAAGGA+GGG - chr7_1:76659750-76659769 Msa1039440:CDS 35.0%
AGAGACATAGTTGGACATTT+AGG + chr7_1:76660094-76660113 None:intergenic 35.0%
!!! ACCTGAAAATTTTGGAGTAC+AGG + chr7_1:76660126-76660145 None:intergenic 35.0%
!!! ACTCCAAAATTTTCAGGTGA+TGG - chr7_1:76660128-76660147 Msa1039440:intron 35.0%
!!! ATTTTCAGGTGATGGTAAAC+AGG - chr7_1:76660136-76660155 Msa1039440:intron 35.0%
!!! TTTTCAGGTGATGGTAAACA+GGG - chr7_1:76660137-76660156 Msa1039440:intron 35.0%
GGACACTCTAGTTAAACTAT+TGG - chr7_1:76660158-76660177 Msa1039440:intron 35.0%
GAGTATCTTGCATTAGGTAT+TGG - chr7_1:76660200-76660219 Msa1039440:intron 35.0%
ATTTATTCAATGGACACGAG+GGG - chr7_1:76660230-76660249 Msa1039440:intron 35.0%
!!! CTTTTAAAACTACTAGTCCG+AGG - chr7_1:76660278-76660297 Msa1039440:intron 35.0%
ATATGACCTCTTCATCACAT+TGG + chr7_1:76660313-76660332 None:intergenic 35.0%
GATGAAGAGGTCATATTACA+TGG - chr7_1:76660317-76660336 Msa1039440:intron 35.0%
! GCATTATTGGCTAAGGAATT+TGG - chr7_1:76660342-76660361 Msa1039440:intron 35.0%
! AAAATGGGTTCCACATAAAG+TGG + chr7_1:76660504-76660523 None:intergenic 35.0%
! GAACCCATTTTCAAAGTTGT+GGG - chr7_1:76660513-76660532 Msa1039440:intron 35.0%
TTTGCTGACCAAACTAATGT+TGG - chr7_1:76660739-76660758 Msa1039440:intron 35.0%
ACAGTGTTCCAACATTAGTT+TGG + chr7_1:76660750-76660769 None:intergenic 35.0%
AACACTGTTCTCAGATTCTT+TGG - chr7_1:76660762-76660781 Msa1039440:intron 35.0%
TCGCAGTAACATATTTAGAG+AGG + chr7_1:76660923-76660942 None:intergenic 35.0%
!! TTTTGATGGATGGAGTGTAA+AGG - chr7_1:76660998-76661017 Msa1039440:intron 35.0%
! TTTGATGGATGGAGTGTAAA+GGG - chr7_1:76660999-76661018 Msa1039440:intron 35.0%
GCAATCAAATTTCATGCAGA+AGG + chr7_1:76661026-76661045 None:intergenic 35.0%
CACATCATCTATGTAGTTCA+TGG + chr7_1:76661055-76661074 None:intergenic 35.0%
ATCTCCAGAATTTATTCCCA+GGG + chr7_1:76661102-76661121 None:intergenic 35.0%
AATCTCCAGAATTTATTCCC+AGG + chr7_1:76661103-76661122 None:intergenic 35.0%
! ATTCTGGAGATTGCAGTATA+TGG - chr7_1:76661111-76661130 Msa1039440:intron 35.0%
! AAGCAACATTTGGTTCATAC+AGG - chr7_1:76661346-76661365 Msa1039440:intron 35.0%
AGGTTTAAGAAGTTCAACAC+AGG + chr7_1:76661395-76661414 None:intergenic 35.0%
! CTTGCCAGATTATTTAAAGC+GGG + chr7_1:76661419-76661438 None:intergenic 35.0%
TTGACTAGATGTGCCAAAAT+GGG + chr7_1:76661452-76661471 None:intergenic 35.0%
ATTGACTAGATGTGCCAAAA+TGG + chr7_1:76661453-76661472 None:intergenic 35.0%
! ACTGTATCTAGACCTTTTCT+TGG - chr7_1:76661505-76661524 Msa1039440:CDS 35.0%
AGAAAACAATTGCATGTCAG+AGG + chr7_1:76661597-76661616 None:intergenic 35.0%
! CACTTTTCAGTGAATAGTTG+CGG + chr7_1:76661791-76661810 None:intergenic 35.0%
TAGGTCAAGAAAGTTACCAT+GGG + chr7_1:76662038-76662057 None:intergenic 35.0%
ATAGGTCAAGAAAGTTACCA+TGG + chr7_1:76662039-76662058 None:intergenic 35.0%
AGTGAAACGAGTAGATGAAG+CGG + chr7_1:76656481-76656500 None:intergenic 40.0%
GGATTTGGCTATTGCGTTAA+CGG + chr7_1:76656532-76656551 None:intergenic 40.0%
AAGCGAGTTTGGAGAGAAAT+GGG + chr7_1:76656578-76656597 None:intergenic 40.0%
!! AAGGGTTAAGAAGTGTTTCG+GGG + chr7_1:76656617-76656636 None:intergenic 40.0%
!! GAAGGGTTAAGAAGTGTTTC+GGG + chr7_1:76656618-76656637 None:intergenic 40.0%
GATTATCGGGAGAAGAAGAA+GGG + chr7_1:76656635-76656654 None:intergenic 40.0%
AGATTATCGGGAGAAGAAGA+AGG + chr7_1:76656636-76656655 None:intergenic 40.0%
ATACAAAGCATGTGTCCAAG+CGG + chr7_1:76657504-76657523 None:intergenic 40.0%
CTTGGACACATGCTTTGTAT+GGG - chr7_1:76657504-76657523 Msa1039440:intron 40.0%
!!! TTTTTGACTTTAGGTGGCGA+TGG - chr7_1:76657547-76657566 Msa1039440:intron 40.0%
GTGTAAACGATTCATACTGC+TGG - chr7_1:76657807-76657826 Msa1039440:intron 40.0%
CAGATAAACACAGTTGCTCT+TGG - chr7_1:76658439-76658458 Msa1039440:intron 40.0%
TATATGACGCCACATGCAAA+AGG - chr7_1:76658517-76658536 Msa1039440:intron 40.0%
TGTTCTTATTCATGCCAAGG+AGG - chr7_1:76658682-76658701 Msa1039440:intron 40.0%
TGTTGTCGATGTCTGACAAT+TGG - chr7_1:76658790-76658809 Msa1039440:intron 40.0%
CTGATTATGGACACTAGGTT+TGG + chr7_1:76658919-76658938 None:intergenic 40.0%
CACTAGAAGAATGCAATGGA+AGG + chr7_1:76659350-76659369 None:intergenic 40.0%
AAACCCCATCTATGCACAAT+CGG - chr7_1:76659481-76659500 Msa1039440:intron 40.0%
! TTACCGATTGTGCATAGATG+GGG + chr7_1:76659487-76659506 None:intergenic 40.0%
! GATTACCGATTGTGCATAGA+TGG + chr7_1:76659489-76659508 None:intergenic 40.0%
ACTGCACAATTTGTCCTTGA+AGG - chr7_1:76659709-76659728 Msa1039440:intron 40.0%
GAAGTGACAAAGAAAAGGAG+GGG - chr7_1:76659751-76659770 Msa1039440:CDS 40.0%
! TCAGTTGACGTTAAAGTGCT+GGG + chr7_1:76659884-76659903 None:intergenic 40.0%
CTAAGTCATAAGCTAGCTGA+TGG + chr7_1:76659959-76659978 None:intergenic 40.0%
GCTCACATTTAAGCTCAGTT+TGG + chr7_1:76659987-76660006 None:intergenic 40.0%
! GCCTGTACTCCAAAATTTTC+AGG - chr7_1:76660122-76660141 Msa1039440:intron 40.0%
CAGTTTCCAATGTGATGAAG+AGG - chr7_1:76660304-76660323 Msa1039440:intron 40.0%
CCAATAAGAGAGTGAGTGTT+AGG + chr7_1:76660460-76660479 None:intergenic 40.0%
CCTAACACTCACTCTCTTAT+TGG - chr7_1:76660457-76660476 Msa1039440:intron 40.0%
ATAGGTTCCACCACTTTATG+TGG - chr7_1:76660491-76660510 Msa1039440:intron 40.0%
! GGAACCCATTTTCAAAGTTG+TGG - chr7_1:76660512-76660531 Msa1039440:intron 40.0%
! GGTCCCACAACTTTGAAAAT+GGG + chr7_1:76660519-76660538 None:intergenic 40.0%
! TTGATGGATGGAGTGTAAAG+GGG - chr7_1:76661000-76661019 Msa1039440:CDS 40.0%
! GAGCATAGGAGCTTTTATGA+AGG + chr7_1:76661079-76661098 None:intergenic 40.0%
TCTCCAGAATTTATTCCCAG+GGG + chr7_1:76661101-76661120 None:intergenic 40.0%
! CATTTGGTTCATACAGGAAC+TGG - chr7_1:76661352-76661371 Msa1039440:intron 40.0%
AAGAAGTTCAACACAGGAGT+TGG + chr7_1:76661389-76661408 None:intergenic 40.0%
! CCAGATTATTTAAAGCGGGA+AGG + chr7_1:76661415-76661434 None:intergenic 40.0%
! CCTTCCCGCTTTAAATAATC+TGG - chr7_1:76661412-76661431 Msa1039440:intron 40.0%
AGGATATCAAGCTGTGACTA+GGG + chr7_1:76661535-76661554 None:intergenic 40.0%
AAGGATATCAAGCTGTGACT+AGG + chr7_1:76661536-76661555 None:intergenic 40.0%
GCTTGATATCCTTGTCTACT+TGG - chr7_1:76661543-76661562 Msa1039440:intron 40.0%
GTCTGTTAACCAAGTAGACA+AGG + chr7_1:76661555-76661574 None:intergenic 40.0%
TAAAGAATGTCGAGTGCAGT+AGG - chr7_1:76661636-76661655 Msa1039440:intron 40.0%
ATTGCAGGTTACAAACGTTC+TGG - chr7_1:76661684-76661703 Msa1039440:intron 40.0%
TTGCAGGTTACAAACGTTCT+GGG - chr7_1:76661685-76661704 Msa1039440:intron 40.0%
AACCTCCAACACTGGTATTA+GGG + chr7_1:76661711-76661730 None:intergenic 40.0%
AAACCTCCAACACTGGTATT+AGG + chr7_1:76661712-76661731 None:intergenic 40.0%
TAAACAGAAACCTCCAACAC+TGG + chr7_1:76661719-76661738 None:intergenic 40.0%
TGAAAGCTGTAGTGCATAGA+AGG - chr7_1:76661827-76661846 Msa1039440:CDS 40.0%
AACACTATATGACCGCATAG+AGG + chr7_1:76661888-76661907 None:intergenic 40.0%
CTATGCGGTCATATAGTGTT+TGG - chr7_1:76661888-76661907 Msa1039440:CDS 40.0%
!! ATTTTACTAGCTTCCTCCCA+TGG - chr7_1:76662019-76662038 Msa1039440:five_prime_UTR 40.0%
ACACGACACTGAAAACTGCT+GGG + chr7_1:76656399-76656418 None:intergenic 45.0%
GTGCAACAAAATCACCACCA+TGG - chr7_1:76656425-76656444 Msa1039440:three_prime_UTR 45.0%
GTGAAACGAGTAGATGAAGC+GGG + chr7_1:76656480-76656499 None:intergenic 45.0%
AATGGGTCGTTAGGGTTGAA+AGG + chr7_1:76656561-76656580 None:intergenic 45.0%
TGGAGAGAAATGGGTCGTTA+GGG + chr7_1:76656569-76656588 None:intergenic 45.0%
TTGGAGAGAAATGGGTCGTT+AGG + chr7_1:76656570-76656589 None:intergenic 45.0%
GAAGCGAGTTTGGAGAGAAA+TGG + chr7_1:76656579-76656598 None:intergenic 45.0%
!! AGGGTTAAGAAGTGTTTCGG+GGG + chr7_1:76656616-76656635 None:intergenic 45.0%
TTTCGATTCCCCTCAACTCA+TGG - chr7_1:76656671-76656690 Msa1039440:three_prime_UTR 45.0%
ATAACTTACTTGAGCGGGAG+TGG + chr7_1:76656697-76656716 None:intergenic 45.0%
!! GTCTTTTGGGTCGTTGTTGT+TGG + chr7_1:76656934-76656953 None:intergenic 45.0%
!! AATCTCTGAAGCACCACACT+TGG + chr7_1:76657129-76657148 None:intergenic 45.0%
! TTCTACCTATCAGTTGGTGC+CGG - chr7_1:76657316-76657335 Msa1039440:three_prime_UTR 45.0%
TGTTTGATGTTCTGTCCGCT+TGG - chr7_1:76657486-76657505 Msa1039440:intron 45.0%
GCTTGGACACATGCTTTGTA+TGG - chr7_1:76657503-76657522 Msa1039440:intron 45.0%
TGGGTGGTTAGATATAGGGA+CGG + chr7_1:76657914-76657933 None:intergenic 45.0%
AGCAAAGGGGGGTTACATTA+AGG - chr7_1:76658209-76658228 Msa1039440:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG - chr7_1:76658210-76658229 Msa1039440:intron 45.0%
!! AGGGAGTACTTCATATGACC+TGG - chr7_1:76658237-76658256 Msa1039440:intron 45.0%
GACGCAAAAGCCAAATACGT+GGG + chr7_1:76658414-76658433 None:intergenic 45.0%
GCAACTGTGTTTATCTGCTC+AGG + chr7_1:76658436-76658455 None:intergenic 45.0%
CCTGTCTATTACTTTCGGCA+GGG - chr7_1:76658479-76658498 Msa1039440:intron 45.0%
TTACTTTCGGCAGGGACTAA+AGG - chr7_1:76658487-76658506 Msa1039440:intron 45.0%
CAGACATCGACAACATGAGA+AGG + chr7_1:76658785-76658804 None:intergenic 45.0%
ACCTAGTGTCCATAATCAGC+TGG - chr7_1:76658920-76658939 Msa1039440:intron 45.0%
ACCAGCTGATTATGGACACT+AGG + chr7_1:76658924-76658943 None:intergenic 45.0%
CTTCGCCAAACATTGCATCA+TGG + chr7_1:76659420-76659439 None:intergenic 45.0%
TGACAAAGAAAAGGAGGGGA+TGG - chr7_1:76659755-76659774 Msa1039440:CDS 45.0%
GACAAAGAAAAGGAGGGGAT+GGG - chr7_1:76659756-76659775 Msa1039440:CDS 45.0%
GTCAGTTGACGTTAAAGTGC+TGG + chr7_1:76659885-76659904 None:intergenic 45.0%
CACATTGGAAACTGTCTCCT+CGG + chr7_1:76660298-76660317 None:intergenic 45.0%
! CATGGACGCATTATTGGCTA+AGG - chr7_1:76660335-76660354 Msa1039440:intron 45.0%
ATGGGTTCCACATAAAGTGG+TGG + chr7_1:76660501-76660520 None:intergenic 45.0%
! GGGTCCCACAACTTTGAAAA+TGG + chr7_1:76660520-76660539 None:intergenic 45.0%
CCAACACTCGCTCTCTTATT+GGG + chr7_1:76660555-76660574 None:intergenic 45.0%
TCCAACACTCGCTCTCTTAT+TGG + chr7_1:76660556-76660575 None:intergenic 45.0%
TGTTCTCAGATTCTTTGGCG+TGG - chr7_1:76660767-76660786 Msa1039440:intron 45.0%
TTATGGCAGACGTTCCTTCT+CGG - chr7_1:76660801-76660820 Msa1039440:intron 45.0%
CACTCCATCCATCAAAACAG+AGG + chr7_1:76660995-76661014 None:intergenic 45.0%
! ATTTATTCCCAGGGGAGCAT+AGG + chr7_1:76661093-76661112 None:intergenic 45.0%
GCAGTATATGGTGCAGTGTT+TGG - chr7_1:76661123-76661142 Msa1039440:intron 45.0%
! GACTAGGGTGTTCCAAGAAA+AGG + chr7_1:76661520-76661539 None:intergenic 45.0%
! TAGTTGTGTTGCTGCATTGC+AGG - chr7_1:76661669-76661688 Msa1039440:intron 45.0%
AACGTGCTCATTCCTCTATG+CGG - chr7_1:76661873-76661892 Msa1039440:CDS 45.0%
GTCAAGAAAGTTACCATGGG+AGG + chr7_1:76662035-76662054 None:intergenic 45.0%
CACGACACTGAAAACTGCTG+GGG + chr7_1:76656398-76656417 None:intergenic 50.0%
CACACGACACTGAAAACTGC+TGG + chr7_1:76656400-76656419 None:intergenic 50.0%
! TACTCGAAAGCATGTCGCCA+TGG + chr7_1:76656445-76656464 None:intergenic 50.0%
GATGAAGCGGGCATGGATAT+GGG + chr7_1:76656468-76656487 None:intergenic 50.0%
AGATGAAGCGGGCATGGATA+TGG + chr7_1:76656469-76656488 None:intergenic 50.0%
! AGGTCAGGAGGTGGTCTTTT+GGG + chr7_1:76656947-76656966 None:intergenic 50.0%
!! AATGTTTCGGTGTCGGACAC+TGG - chr7_1:76657077-76657096 Msa1039440:three_prime_UTR 50.0%
! TCTGAAGCACCACACTTGGA+AGG + chr7_1:76657125-76657144 None:intergenic 50.0%
ATAACAAGCTCCGTGACAGC+CGG + chr7_1:76657338-76657357 None:intergenic 50.0%
CAGAGCTTATGTTCCTGCAG+TGG - chr7_1:76657360-76657379 Msa1039440:three_prime_UTR 50.0%
GCTTATGTTCCTGCAGTGGA+TGG - chr7_1:76657364-76657383 Msa1039440:three_prime_UTR 50.0%
GCGGATGGAGAAACGGTAAT+TGG - chr7_1:76657437-76657456 Msa1039440:intron 50.0%
! CCACAGCCCAATAGTTGATG+TGG + chr7_1:76657788-76657807 None:intergenic 50.0%
CCACATCAACTATTGGGCTG+TGG - chr7_1:76657785-76657804 Msa1039440:intron 50.0%
GATTCATACTGCTGGCAGCA+TGG - chr7_1:76657815-76657834 Msa1039440:intron 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr7_1:76658214-76658233 Msa1039440:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr7_1:76658218-76658237 Msa1039440:intron 50.0%
GGACGCAAAAGCCAAATACG+TGG + chr7_1:76658415-76658434 None:intergenic 50.0%
GCCTGTCTATTACTTTCGGC+AGG - chr7_1:76658478-76658497 Msa1039440:intron 50.0%
CCCTGCCGAAAGTAATAGAC+AGG + chr7_1:76658482-76658501 None:intergenic 50.0%
! CACGCTGTACCTTTTGCATG+TGG + chr7_1:76658529-76658548 None:intergenic 50.0%
! CACATGCAAAAGGTACAGCG+TGG - chr7_1:76658527-76658546 Msa1039440:intron 50.0%
AACACGAGGCTGCTGAATCA+TGG + chr7_1:76658633-76658652 None:intergenic 50.0%
CCCAATAAGAGAGCGAGTGT+TGG - chr7_1:76660552-76660571 Msa1039440:intron 50.0%
CGTCTGCCATAATCTTCTCC+TGG + chr7_1:76660793-76660812 None:intergenic 50.0%
TATGGCAGACGTTCCTTCTC+GGG - chr7_1:76660802-76660821 Msa1039440:intron 50.0%
ACGTTCCTTCTCGGGATGAT+CGG - chr7_1:76660810-76660829 Msa1039440:intron 50.0%
! TTTTCCCGATCATCCCGAGA+AGG + chr7_1:76660818-76660837 None:intergenic 50.0%
TCTCGGGATGATCGGGAAAA+CGG - chr7_1:76660818-76660837 Msa1039440:intron 50.0%
CCATCCATCAAAACAGAGGC+AGG + chr7_1:76660991-76661010 None:intergenic 50.0%
!!! CCTGCCTCTGTTTTGATGGA+TGG - chr7_1:76660988-76661007 Msa1039440:intron 50.0%
TAAAAGCTCCTATGCTCCCC+TGG - chr7_1:76661082-76661101 Msa1039440:CDS 50.0%
AAAAGCTCCTATGCTCCCCT+GGG - chr7_1:76661083-76661102 Msa1039440:CDS 50.0%
GCTCCCCTGGGAATAAATTC+TGG - chr7_1:76661095-76661114 Msa1039440:CDS 50.0%
GCTGTAGTGCATAGAAGGCA+TGG - chr7_1:76661832-76661851 Msa1039440:CDS 50.0%
! TCGAAAGCATGTCGCCATGG+TGG + chr7_1:76656442-76656461 None:intergenic 55.0%
ACGAGTAGATGAAGCGGGCA+TGG + chr7_1:76656475-76656494 None:intergenic 55.0%
AGCAGCGACAGAAGCGAGTT+TGG + chr7_1:76656589-76656608 None:intergenic 55.0%
! CAGGTCAGGAGGTGGTCTTT+TGG + chr7_1:76656948-76656967 None:intergenic 55.0%
CTGCCATCGCTTCTGCTCAA+CGG - chr7_1:76656965-76656984 Msa1039440:three_prime_UTR 55.0%
CACTGGCATGTGTCAGACAC+CGG - chr7_1:76657094-76657113 Msa1039440:three_prime_UTR 55.0%
! CCACACTTGGAAGGCATGTC+CGG + chr7_1:76657116-76657135 None:intergenic 55.0%
! CTTTAGGAGCCATCCACTGC+AGG + chr7_1:76657376-76657395 None:intergenic 55.0%
TCAATTCCACCGGGACTACG+CGG - chr7_1:76657414-76657433 Msa1039440:three_prime_UTR 55.0%
TAGGTGGCGATGGAGACAGA+AGG - chr7_1:76657557-76657576 Msa1039440:three_prime_UTR 55.0%
TCATACTGCTGGCAGCATGG+TGG - chr7_1:76657818-76657837 Msa1039440:intron 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr7_1:76658217-76658236 Msa1039440:intron 55.0%
GTTGCTCTTGGAGCTGCTGT+AGG - chr7_1:76658451-76658470 Msa1039440:intron 55.0%
AGCCTCGTGTTCCATCGTCT+GGG - chr7_1:76658642-76658661 Msa1039440:intron 55.0%
AACCCAGACGATGGAACACG+AGG + chr7_1:76658647-76658666 None:intergenic 55.0%
TCAGATTCTTTGGCGTGGCC+AGG - chr7_1:76660772-76660791 Msa1039440:intron 55.0%
GCGTGGCCAGGAGAAGATTA+TGG - chr7_1:76660784-76660803 Msa1039440:intron 55.0%
CGTTCCTTCTCGGGATGATC+GGG - chr7_1:76660811-76660830 Msa1039440:intron 55.0%
GATCGGGAAAACGGTACTGC+TGG - chr7_1:76660827-76660846 Msa1039440:intron 55.0%
!! GCTGCCTGCCTCTGTTTTGA+TGG - chr7_1:76660984-76661003 Msa1039440:intron 55.0%
CTGGGCCCTAATACCAGTGT+TGG - chr7_1:76661703-76661722 Msa1039440:intron 55.0%
! GGCCCTAATACCAGTGTTGG+AGG - chr7_1:76661706-76661725 Msa1039440:intron 55.0%
! GGGAGTGGCCATGAGTTGAG+GGG + chr7_1:76656682-76656701 None:intergenic 60.0%
! CGGGAGTGGCCATGAGTTGA+GGG + chr7_1:76656683-76656702 None:intergenic 60.0%
AGAAGCGATGGCAGGTCAGG+AGG + chr7_1:76656959-76656978 None:intergenic 60.0%
AGCAGAAGCGATGGCAGGTC+AGG + chr7_1:76656962-76656981 None:intergenic 60.0%
CGTTGAGCAGAAGCGATGGC+AGG + chr7_1:76656967-76656986 None:intergenic 60.0%
CGACCGTTGAGCAGAAGCGA+TGG + chr7_1:76656971-76656990 None:intergenic 60.0%
CCGGACATGCCTTCCAAGTG+TGG - chr7_1:76657113-76657132 Msa1039440:three_prime_UTR 60.0%
GACAGCCGGCACCAACTGAT+AGG + chr7_1:76657324-76657343 None:intergenic 60.0%
!! TCAGTTGGTGCCGGCTGTCA+CGG - chr7_1:76657325-76657344 Msa1039440:three_prime_UTR 60.0%
CAATTCCACCGGGACTACGC+GGG - chr7_1:76657415-76657434 Msa1039440:three_prime_UTR 60.0%
TACGCGGGCGGATGGAGAAA+CGG - chr7_1:76657430-76657449 Msa1039440:intron 60.0%
CAGCCTCGTGTTCCATCGTC+TGG - chr7_1:76658641-76658660 Msa1039440:intron 60.0%
GCAGGTCTCAACCCAGACGA+TGG + chr7_1:76658656-76658675 None:intergenic 60.0%
GCGGGAGTGGCCATGAGTTG+AGG + chr7_1:76656684-76656703 None:intergenic 65.0%
AGCGATGGCAGGTCAGGAGG+TGG + chr7_1:76656956-76656975 None:intergenic 65.0%
TTCCACCGGGACTACGCGGG+CGG - chr7_1:76657418-76657437 Msa1039440:three_prime_UTR 70.0%
TCCATCCGCCCGCGTAGTCC+CGG + chr7_1:76657426-76657445 None:intergenic 70.0%
ATCCGCCCGCGTAGTCCCGG+TGG + chr7_1:76657423-76657442 None:intergenic 75.0%
ACCGGGACTACGCGGGCGGA+TGG - chr7_1:76657422-76657441 Msa1039440:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76656328 76662123 76656328 ID=Msa1039440;Name=Msa1039440
chr7_1 mRNA 76656328 76662123 76656328 ID=Msa1039440-mRNA-1;Parent=Msa1039440;Name=Msa1039440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=116|0.87|1|1|0.62|0.66|9|1140|291
chr7_1 exon 76656328 76657438 76656328 ID=Msa1039440-mRNA-1:exon:19946;Parent=Msa1039440-mRNA-1
chr7_1 exon 76657548 76657675 76657548 ID=Msa1039440-mRNA-1:exon:19945;Parent=Msa1039440-mRNA-1
chr7_1 exon 76658254 76658307 76658254 ID=Msa1039440-mRNA-1:exon:19944;Parent=Msa1039440-mRNA-1
chr7_1 exon 76659748 76659821 76659748 ID=Msa1039440-mRNA-1:exon:19943;Parent=Msa1039440-mRNA-1
chr7_1 exon 76659913 76660009 76659913 ID=Msa1039440-mRNA-1:exon:19942;Parent=Msa1039440-mRNA-1
chr7_1 exon 76660832 76660891 76660832 ID=Msa1039440-mRNA-1:exon:19941;Parent=Msa1039440-mRNA-1
chr7_1 exon 76661000 76661122 76661000 ID=Msa1039440-mRNA-1:exon:19940;Parent=Msa1039440-mRNA-1
chr7_1 exon 76661439 76661543 76661439 ID=Msa1039440-mRNA-1:exon:19939;Parent=Msa1039440-mRNA-1
chr7_1 exon 76661744 76662123 76661744 ID=Msa1039440-mRNA-1:exon:19938;Parent=Msa1039440-mRNA-1
chr7_1 five_prime_UTR 76662008 76662123 76662008 ID=Msa1039440-mRNA-1:five_prime_utr;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76661744 76662007 76661744 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76661439 76661543 76661439 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76661000 76661122 76661000 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76660832 76660891 76660832 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76659913 76660009 76659913 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76659748 76659821 76659748 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76658254 76658307 76658254 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 CDS 76657577 76657675 76657577 ID=Msa1039440-mRNA-1:cds;Parent=Msa1039440-mRNA-1
chr7_1 three_prime_UTR 76657548 76657576 76657548 ID=Msa1039440-mRNA-1:three_prime_utr;Parent=Msa1039440-mRNA-1
chr7_1 three_prime_UTR 76656328 76657438 76656328 ID=Msa1039440-mRNA-1:three_prime_utr;Parent=Msa1039440-mRNA-1
Gene Sequence

>Msa1039440

ATGGCGACATGCTTTCGAGTACCCATATCCATGCCCGCTTCATCTACTCGTTTCACTCCAACAAGAAGATTGAGAACTCTCAGAACCGTTAACGCAATAGCCAAATCCAAAATTCCTTTCAACCCTAACGACCCATTTCTCTCCAAACTCGCTTCTGTCGCTGCTTCTTCCCCCGAAACACTTCTTAACCCTTCTTCTTCTCCCGATAATCTTCCTTTTTTGGATATTTTCGATTCCCCTCAACTCATGGCCACTCCCGCTCAACTTGAAAGAAGTGTTTCATACAGCCAACAACAACGACCCAAAAGACCACCTCCTGACCTGCCATCGCTTCTGCTCAACGGTCGAATTGTTTACATTGGCATGCCTTTGGTGCCGGCTGTCACGGAGCTTGTTATTGCAGAGCTTATGTTCCTGCAGTGGATGGCTCCTAAAGAACCAATATATATTTACATCAATTCCACCGGGACTACGCGGGCGGATGGAGAAACGGTGGCGATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGATGAAAACTGAGATAAACACAGTTGCTCTTGGAGCTGCTGTAGGTCAAGCCTGTCTATTACTTTCGGCAGGGACTAAAGGTAGACGCTATATGACGCCACATGCAAAAGCCATGATTCAGCAGCCTCGTGTTCCATCGTCTGGGTTGAGACCTGCAAGTGATGTTCTTATTCATGCCAAGGAGGTGATGGTAAACAGGGACACTCTAGTTAAACTATTGGCCAAACATACAGAAAATATTCTTTGGCGTGGCCAGGAGAAGATTATGGCAGACGTTCCTTCTCGGGATGATCGGGAAAACGGTACTGCTGGTGCTAAAGTTGAAAATAGATTTTAG
Protein sequence

>Msa1039440

MATCFRVPISMPASSTRFTPTRRLRTLRTVNAIAKSKIPFNPNDPFLSKLASVAASSPETLLNPSSSPDNLPFLDIFDSPQLMATPAQLERSVSYSQQQRPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMETEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENILWRGQEKIMADVPSRDDRENGTAGAKVENRF*