AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239390 MtrunA17_Chr2g0295931 93.863 277 8 1 1 277 1 268 0.0 514
Msa0239390 MtrunA17_Chr6g0451021 41.887 265 139 4 5 266 31 283 1.40e-55 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239390 AT4G15830.1 57.194 278 102 4 1 275 1 264 6.99e-101 297
Msa0239390 AT5G14790.1 42.523 214 115 2 56 266 70 278 4.42e-56 184
Msa0239390 AT3G01450.1 44.390 205 109 1 56 260 67 266 2.95e-55 182
Msa0239390 AT3G01450.2 44.390 205 109 1 56 260 67 266 2.95e-55 182
Msa0239390 AT3G18530.3 48.227 141 68 1 96 236 9 144 4.78e-35 127
Msa0239390 AT3G18530.2 49.231 130 61 1 107 236 1 125 3.47e-32 119
Msa0239390 AT3G18530.1 50.000 124 57 1 113 236 124 242 1.55e-29 115

Find 85 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATCTGACATGGGTTTC+AGG 0.101075 2_2:-13730026 None:intergenic
TGCTGTTGCTGCTGTGGTTT+TGG 0.159324 2_2:-13729922 None:intergenic
AGTGCCAAACTTTACCATTT+TGG 0.211534 2_2:-13731213 None:intergenic
GCAGAGTTTGATTGAAGATT+TGG 0.260333 2_2:+13730157 Msa0239390:intron
ATTGAGGAAATGGAGGAGTT+TGG 0.270099 2_2:+13731394 Msa0239390:CDS
AAAATTGAAAGAGCATTAAT+TGG 0.272815 2_2:-13731585 None:intergenic
TCCATTTCTGAGGCATTTGA+TGG 0.287057 2_2:+13730498 Msa0239390:CDS
TTTATGCAAAACCTCTATTA+TGG 0.287797 2_2:+13730428 Msa0239390:CDS
CTTGCTGCATCTCTTGCCTC+TGG 0.306269 2_2:-13731466 None:intergenic
TTCTGAGGCATTTGATGGCT+TGG 0.330088 2_2:+13730503 Msa0239390:CDS
ATCCAAATGTGTCTCCAAAA+TGG 0.333713 2_2:+13731199 Msa0239390:CDS
TTGAGGAAATGGAGGAGTTT+GGG 0.339563 2_2:+13731395 Msa0239390:CDS
CTTACTTGAATCTGAGCTTC+AGG 0.347459 2_2:-13730045 None:intergenic
GGTCTTTCTTGGGTTATTGT+TGG 0.354496 2_2:-13729868 None:intergenic
ATCGATCAATGTAATAGAAA+TGG 0.369859 2_2:-13729790 None:intergenic
TGAATAAGATGTTATAGAAA+TGG 0.374697 2_2:-13729703 None:intergenic
TTCCATTGCTTCAGAAACTA+AGG 0.397711 2_2:+13731123 Msa0239390:CDS
GCCATCAAATGCCTCAGAAA+TGG 0.405071 2_2:-13730499 None:intergenic
AGATAGTTAAACTTTAGAAT+TGG 0.410763 2_2:+13731610 Msa0239390:three_prime_UTR
GTTGGAAGAGCATTGTCAAT+AGG 0.411759 2_2:-13729850 None:intergenic
ATGTGGAGAGGAACAGAAGA+TGG 0.420429 2_2:+13731527 Msa0239390:CDS
TTTATTTGTGGCAGTGCTCA+TGG 0.431114 2_2:+13731677 Msa0239390:three_prime_UTR
TTGCTGCATCTCTTGCCTCT+GGG 0.433357 2_2:-13731465 None:intergenic
GTGAGTCCTTGAACGATGTT+AGG 0.437164 2_2:+13730204 Msa0239390:CDS
AAAATCAATCCTTACAAAAT+GGG 0.442598 2_2:-13730260 None:intergenic
CAGCTTTAGCCCTGATCCTA+AGG 0.446309 2_2:-13731166 None:intergenic
TGCTGTTGCTGTTGCTGCTG+TGG 0.447926 2_2:-13729928 None:intergenic
TTGTGTGTGAAGAAGCTGAT+AGG 0.451109 2_2:+13731066 Msa0239390:CDS
TTGTAAATTCTTAATGAGAC+CGG 0.461778 2_2:-13731852 None:intergenic
TAGAAGTTTAGCTTTATTTG+TGG 0.467412 2_2:+13731665 Msa0239390:three_prime_UTR
TGATAGGGCACTTGGATCAA+TGG 0.469114 2_2:+13731082 Msa0239390:CDS
AAATCGCCTAACATCGTTCA+AGG 0.470782 2_2:-13730210 None:intergenic
GCAGCAGGGAATTGAGGAAA+TGG 0.471845 2_2:+13731384 Msa0239390:intron
TAAAGAAAATTTAGATTAGG+AGG 0.477102 2_2:+13731809 Msa0239390:three_prime_UTR
CATACAGGAATGGGCTGGAA+GGG 0.477162 2_2:-13729653 None:intergenic
TAATCAATGGTGGGTTCCAA+TGG 0.479929 2_2:-13729988 None:intergenic
AACCTTAGTTTCTGAAGCAA+TGG 0.485737 2_2:-13731125 None:intergenic
AGAAAATTTAGATTAGGAGG+TGG 0.490993 2_2:+13731812 Msa0239390:three_prime_UTR
ATTATGGCAGCAGGGAATTG+AGG 0.494357 2_2:+13731378 Msa0239390:intron
TAACGGTAACATACAGGAAT+GGG 0.495863 2_2:-13729662 None:intergenic
GCTGCTGCTGAAATCTTCTC+AGG 0.502458 2_2:+13731034 Msa0239390:CDS
TATTGCAACTTCAGTGTATG+AGG 0.503870 2_2:+13731492 Msa0239390:CDS
AGTGTATGAGGCAATCATTA+AGG 0.512370 2_2:+13731504 Msa0239390:CDS
GTCAGATGAAATATAATCAA+TGG 0.512715 2_2:-13730001 None:intergenic
TGAGGCAATCATTAAGGATG+TGG 0.528288 2_2:+13731510 Msa0239390:CDS
ATCAGAAGCAGCCATAATAG+AGG 0.530469 2_2:-13730439 None:intergenic
TAGGGATAAAATTGTGTTGG+TGG 0.538015 2_2:+13730374 Msa0239390:intron
AATTTAGATTAGGAGGTGGA+AGG 0.538518 2_2:+13731816 Msa0239390:three_prime_UTR
GTTTGATCCTTCCATTTCTG+AGG 0.538757 2_2:+13730488 Msa0239390:CDS
GGAAATGGAGGAGTTTGGGA+TGG 0.539001 2_2:+13731399 Msa0239390:CDS
AATCAATGGTGGGTTCCAAT+GGG 0.540052 2_2:-13729987 None:intergenic
GAAGAAGCTGATAGGGCACT+TGG 0.542782 2_2:+13731074 Msa0239390:CDS
TGTACGTTTGCTCATACTTG+AGG 0.543866 2_2:+13731636 Msa0239390:three_prime_UTR
TGATGAAAATCAAATCCCAT+TGG 0.544278 2_2:+13729972 Msa0239390:CDS
GTGGTGTAACGGTAACATAC+AGG 0.546224 2_2:-13729668 None:intergenic
CTGAGCTTCAGGATCTGACA+TGG 0.548880 2_2:-13730034 None:intergenic
ACATACAGGAATGGGCTGGA+AGG 0.549563 2_2:-13729654 None:intergenic
AATTGTGTTGGTGGTGGTGA+AGG 0.551275 2_2:+13730383 Msa0239390:CDS
AGTTTCTGAAGCAATGGAAG+AGG 0.555513 2_2:-13731119 None:intergenic
ATACAGGAATGGGCTGGAAG+GGG 0.560423 2_2:-13729652 None:intergenic
GGATAAAATTGTGTTGGTGG+TGG 0.561353 2_2:+13730377 Msa0239390:CDS
AAGCAATGGAAGAGGTGTCA+TGG 0.567617 2_2:-13731111 None:intergenic
GAAATCTAATAATTTGCTGA+TGG 0.572246 2_2:-13731714 None:intergenic
AGATGAAATATAATCAATGG+TGG 0.574708 2_2:-13729998 None:intergenic
AGGAACAGAAGATGGAAGTG+TGG 0.576946 2_2:+13731535 Msa0239390:CDS
GTAACGGTAACATACAGGAA+TGG 0.579763 2_2:-13729663 None:intergenic
GATTAGGGATAAAATTGTGT+TGG 0.587172 2_2:+13730371 Msa0239390:intron
GAAATGGAAAGAGACGTTAG+TGG 0.596462 2_2:-13729687 None:intergenic
TAGGGCACTTGGATCAATGG+TGG 0.605281 2_2:+13731085 Msa0239390:CDS
GGTAACATACAGGAATGGGC+TGG 0.609763 2_2:-13729658 None:intergenic
TAATTGGTGTTAGCTTAGAG+TGG 0.610320 2_2:-13731569 None:intergenic
AGGGCACTTGGATCAATGGT+GGG 0.613700 2_2:+13731086 Msa0239390:CDS
TGTGTGTGAAGAAGCTGATA+GGG 0.615409 2_2:+13731067 Msa0239390:CDS
TTTATAATTATAATTAACAA+CGG 0.616909 2_2:+13731775 Msa0239390:three_prime_UTR
GATGAAATATAATCAATGGT+GGG 0.618538 2_2:-13729997 None:intergenic
AAGAGACGTTAGTGGTGTAA+CGG 0.624816 2_2:-13729679 None:intergenic
TCAAATGCCTCAGAAATGGA+AGG 0.629609 2_2:-13730495 None:intergenic
TGAGCTTCAGGATCTGACAT+GGG 0.635005 2_2:-13730033 None:intergenic
GCAGGGAATTGAGGAAATGG+AGG 0.641748 2_2:+13731387 Msa0239390:intron
TCTTTCTCAAACAACAACAA+TGG 0.642542 2_2:+13729819 Msa0239390:exon
TAAATTCTTAATGAGACCGG+CGG 0.645456 2_2:-13731849 None:intergenic
GGAAGGTTAGAGAAAGCCGC+CGG 0.653729 2_2:+13731833 Msa0239390:three_prime_UTR
TCATCATTGGAAGAAGTACG+AGG 0.693109 2_2:-13729955 None:intergenic
CAATCATTAAGGATGTGGAG+AGG 0.699795 2_2:+13731515 Msa0239390:CDS
AGTGAATGATAGACTCCCAG+AGG 0.721160 2_2:+13731450 Msa0239390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAATATTAATTCTAT+TGG + chr2_2:13730959-13730978 Msa0239390:intron 10.0%
!!! ATTAAATCAATTTGTTTTAT+TGG + chr2_2:13731320-13731339 Msa0239390:intron 10.0%
!!! TTTTAAAGAAAATTTAGATT+AGG + chr2_2:13731806-13731825 Msa0239390:three_prime_UTR 10.0%
!! TTTCAAAATATTAATTCTAT+TGG + chr2_2:13730959-13730978 Msa0239390:intron 10.0%
!!! ATTAAATCAATTTGTTTTAT+TGG + chr2_2:13731320-13731339 Msa0239390:intron 10.0%
!!! TTTTAAAGAAAATTTAGATT+AGG + chr2_2:13731806-13731825 Msa0239390:three_prime_UTR 10.0%
!!! AAGTTTTGAAATTTTTGTTA+TGG + chr2_2:13730301-13730320 Msa0239390:intron 15.0%
!!! AAGTTTTGAAATTTTTGTTA+TGG + chr2_2:13730301-13730320 Msa0239390:intron 15.0%
!! TGAATAAGATGTTATAGAAA+TGG - chr2_2:13729706-13729725 None:intergenic 20.0%
!!! GAATTTTTTTACTTGTGATT+TGG + chr2_2:13730107-13730126 Msa0239390:intron 20.0%
!! AAAATCAATCCTTACAAAAT+GGG - chr2_2:13730263-13730282 None:intergenic 20.0%
!! AAAAATCAATCCTTACAAAA+TGG - chr2_2:13730264-13730283 None:intergenic 20.0%
!!! ATTTTTGTTATGGATTGAAT+TGG + chr2_2:13730311-13730330 Msa0239390:intron 20.0%
!!! TTTTTGTTATGGATTGAATT+GGG + chr2_2:13730312-13730331 Msa0239390:intron 20.0%
!! AATTCATATACACCATTAAT+TGG - chr2_2:13731303-13731322 None:intergenic 20.0%
!!! ATTTGTTTTATTGGTGTTTT+TGG + chr2_2:13731329-13731348 Msa0239390:intron 20.0%
!!! TTTGTTTTATTGGTGTTTTT+GGG + chr2_2:13731330-13731349 Msa0239390:intron 20.0%
!!! GTTTCTAAAGAGTATTATTA+TGG + chr2_2:13731362-13731381 Msa0239390:intron 20.0%
!!! AAAATTGAAAGAGCATTAAT+TGG - chr2_2:13731588-13731607 None:intergenic 20.0%
!!! AGATAGTTAAACTTTAGAAT+TGG + chr2_2:13731610-13731629 Msa0239390:three_prime_UTR 20.0%
!! TAAAGAAAATTTAGATTAGG+AGG + chr2_2:13731809-13731828 Msa0239390:three_prime_UTR 20.0%
!! AATTTACAATGAAATTTACG+TGG + chr2_2:13731866-13731885 Msa0239390:three_prime_UTR 20.0%
!! TGAATAAGATGTTATAGAAA+TGG - chr2_2:13729706-13729725 None:intergenic 20.0%
!!! GAATTTTTTTACTTGTGATT+TGG + chr2_2:13730107-13730126 Msa0239390:intron 20.0%
!! AAAATCAATCCTTACAAAAT+GGG - chr2_2:13730263-13730282 None:intergenic 20.0%
!! AAAAATCAATCCTTACAAAA+TGG - chr2_2:13730264-13730283 None:intergenic 20.0%
!!! ATTTTTGTTATGGATTGAAT+TGG + chr2_2:13730311-13730330 Msa0239390:intron 20.0%
!!! TTTTTGTTATGGATTGAATT+GGG + chr2_2:13730312-13730331 Msa0239390:intron 20.0%
!! AATTCATATACACCATTAAT+TGG - chr2_2:13731303-13731322 None:intergenic 20.0%
!!! ATTTGTTTTATTGGTGTTTT+TGG + chr2_2:13731329-13731348 Msa0239390:intron 20.0%
!!! TTTGTTTTATTGGTGTTTTT+GGG + chr2_2:13731330-13731349 Msa0239390:intron 20.0%
!!! GTTTCTAAAGAGTATTATTA+TGG + chr2_2:13731362-13731381 Msa0239390:intron 20.0%
!!! AAAATTGAAAGAGCATTAAT+TGG - chr2_2:13731588-13731607 None:intergenic 20.0%
!!! AGATAGTTAAACTTTAGAAT+TGG + chr2_2:13731610-13731629 Msa0239390:three_prime_UTR 20.0%
!! TAAAGAAAATTTAGATTAGG+AGG + chr2_2:13731809-13731828 Msa0239390:three_prime_UTR 20.0%
!!! GAATTTGATTTTGATTTGTG+AGG - chr2_2:13729760-13729779 None:intergenic 25.0%
! ATCGATCAATGTAATAGAAA+TGG - chr2_2:13729793-13729812 None:intergenic 25.0%
! GATGAAATATAATCAATGGT+GGG - chr2_2:13730000-13730019 None:intergenic 25.0%
! AGATGAAATATAATCAATGG+TGG - chr2_2:13730001-13730020 None:intergenic 25.0%
! GTCAGATGAAATATAATCAA+TGG - chr2_2:13730004-13730023 None:intergenic 25.0%
! AAGATTTGGATTCAAAAAAC+TGG + chr2_2:13730171-13730190 Msa0239390:CDS 25.0%
! AGATTTGGATTCAAAAAACT+GGG + chr2_2:13730172-13730191 Msa0239390:CDS 25.0%
! ATGTGAAGTTTGTATGATTA+GGG + chr2_2:13730356-13730375 Msa0239390:intron 25.0%
! TTTATGCAAAACCTCTATTA+TGG + chr2_2:13730428-13730447 Msa0239390:CDS 25.0%
!! TCTGATATTTTCAATGCTTT+TGG + chr2_2:13730456-13730475 Msa0239390:CDS 25.0%
! AAATTGAACCAAATTAGACT+TGG + chr2_2:13730701-13730720 Msa0239390:intron 25.0%
! ACTCCATTTGAATTATGATA+TGG + chr2_2:13731233-13731252 Msa0239390:intron 25.0%
! GTACCATATCATAATTCAAA+TGG - chr2_2:13731239-13731258 None:intergenic 25.0%
! TTGAATTATGATATGGTACA+TGG + chr2_2:13731240-13731259 Msa0239390:intron 25.0%
! AACATATCACAACCAATTAA+TGG + chr2_2:13731288-13731307 Msa0239390:intron 25.0%
!!! TAGAAGTTTAGCTTTATTTG+TGG + chr2_2:13731665-13731684 Msa0239390:three_prime_UTR 25.0%
!!! GAAATCTAATAATTTGCTGA+TGG - chr2_2:13731717-13731736 None:intergenic 25.0%
! TTGTAAATTCTTAATGAGAC+CGG - chr2_2:13731855-13731874 None:intergenic 25.0%
!!! GAATTTGATTTTGATTTGTG+AGG - chr2_2:13729760-13729779 None:intergenic 25.0%
! ATCGATCAATGTAATAGAAA+TGG - chr2_2:13729793-13729812 None:intergenic 25.0%
! GATGAAATATAATCAATGGT+GGG - chr2_2:13730000-13730019 None:intergenic 25.0%
! AGATGAAATATAATCAATGG+TGG - chr2_2:13730001-13730020 None:intergenic 25.0%
! GTCAGATGAAATATAATCAA+TGG - chr2_2:13730004-13730023 None:intergenic 25.0%
! AAGATTTGGATTCAAAAAAC+TGG + chr2_2:13730171-13730190 Msa0239390:CDS 25.0%
! AGATTTGGATTCAAAAAACT+GGG + chr2_2:13730172-13730191 Msa0239390:CDS 25.0%
! ATGTGAAGTTTGTATGATTA+GGG + chr2_2:13730356-13730375 Msa0239390:intron 25.0%
! TTTATGCAAAACCTCTATTA+TGG + chr2_2:13730428-13730447 Msa0239390:CDS 25.0%
!! TCTGATATTTTCAATGCTTT+TGG + chr2_2:13730456-13730475 Msa0239390:CDS 25.0%
! AAATTGAACCAAATTAGACT+TGG + chr2_2:13730701-13730720 Msa0239390:intron 25.0%
! ACTCCATTTGAATTATGATA+TGG + chr2_2:13731233-13731252 Msa0239390:intron 25.0%
! GTACCATATCATAATTCAAA+TGG - chr2_2:13731239-13731258 None:intergenic 25.0%
! TTGAATTATGATATGGTACA+TGG + chr2_2:13731240-13731259 Msa0239390:intron 25.0%
! AACATATCACAACCAATTAA+TGG + chr2_2:13731288-13731307 Msa0239390:intron 25.0%
!!! TAGAAGTTTAGCTTTATTTG+TGG + chr2_2:13731665-13731684 Msa0239390:three_prime_UTR 25.0%
!!! GAAATCTAATAATTTGCTGA+TGG - chr2_2:13731717-13731736 None:intergenic 25.0%
! TTGTAAATTCTTAATGAGAC+CGG - chr2_2:13731855-13731874 None:intergenic 25.0%
TCTTTCTCAAACAACAACAA+TGG + chr2_2:13729819-13729838 Msa0239390:exon 30.0%
!!! TTGTTTTTTGGGTCTTTCTT+GGG - chr2_2:13729881-13729900 None:intergenic 30.0%
!!! GCGATTTTAGGTTGTTTTTT+GGG - chr2_2:13729892-13729911 None:intergenic 30.0%
!!! AGCGATTTTAGGTTGTTTTT+TGG - chr2_2:13729893-13729912 None:intergenic 30.0%
!! TGGGATTTGATTTTCATCAT+TGG - chr2_2:13729971-13729990 None:intergenic 30.0%
TGATGAAAATCAAATCCCAT+TGG + chr2_2:13729972-13729991 Msa0239390:CDS 30.0%
! CTTCTATTACCCATTTTGTA+AGG + chr2_2:13730251-13730270 Msa0239390:intron 30.0%
GATGTGAAGTTTGTATGATT+AGG + chr2_2:13730355-13730374 Msa0239390:intron 30.0%
GATTAGGGATAAAATTGTGT+TGG + chr2_2:13730371-13730390 Msa0239390:intron 30.0%
AGGTTTAACCAAGTCTAATT+TGG - chr2_2:13730712-13730731 None:intergenic 30.0%
! AATGTTGAATTGTGTTGTTC+TGG + chr2_2:13730989-13731008 Msa0239390:intron 30.0%
AATTGGTTGTGATATGTTGA+CGG - chr2_2:13731286-13731305 None:intergenic 30.0%
AGAAAATTTAGATTAGGAGG+TGG + chr2_2:13731812-13731831 Msa0239390:three_prime_UTR 30.0%
TCTTTCTCAAACAACAACAA+TGG + chr2_2:13729819-13729838 Msa0239390:exon 30.0%
!!! TTGTTTTTTGGGTCTTTCTT+GGG - chr2_2:13729881-13729900 None:intergenic 30.0%
!!! GCGATTTTAGGTTGTTTTTT+GGG - chr2_2:13729892-13729911 None:intergenic 30.0%
!!! AGCGATTTTAGGTTGTTTTT+TGG - chr2_2:13729893-13729912 None:intergenic 30.0%
!! TGGGATTTGATTTTCATCAT+TGG - chr2_2:13729971-13729990 None:intergenic 30.0%
TGATGAAAATCAAATCCCAT+TGG + chr2_2:13729972-13729991 Msa0239390:CDS 30.0%
! CTTCTATTACCCATTTTGTA+AGG + chr2_2:13730251-13730270 Msa0239390:intron 30.0%
GATGTGAAGTTTGTATGATT+AGG + chr2_2:13730355-13730374 Msa0239390:intron 30.0%
GATTAGGGATAAAATTGTGT+TGG + chr2_2:13730371-13730390 Msa0239390:intron 30.0%
AGGTTTAACCAAGTCTAATT+TGG - chr2_2:13730712-13730731 None:intergenic 30.0%
! AATGTTGAATTGTGTTGTTC+TGG + chr2_2:13730989-13731008 Msa0239390:intron 30.0%
AATTGGTTGTGATATGTTGA+CGG - chr2_2:13731286-13731305 None:intergenic 30.0%
AGAAAATTTAGATTAGGAGG+TGG + chr2_2:13731812-13731831 Msa0239390:three_prime_UTR 30.0%
TAACGGTAACATACAGGAAT+GGG - chr2_2:13729665-13729684 None:intergenic 35.0%
!!! GTTGTTTTTTGGGTCTTTCT+TGG - chr2_2:13729882-13729901 None:intergenic 35.0%
GCAGAGTTTGATTGAAGATT+TGG + chr2_2:13730157-13730176 Msa0239390:intron 35.0%
! GTTATGGATTGAATTGGGTT+TGG + chr2_2:13730317-13730336 Msa0239390:intron 35.0%
TAGGGATAAAATTGTGTTGG+TGG + chr2_2:13730374-13730393 Msa0239390:intron 35.0%
!! TTTTGCATAAAGCACTACGA+GGG - chr2_2:13730419-13730438 None:intergenic 35.0%
AAAATCATGATCAAGCTGTC+CGG - chr2_2:13730739-13730758 None:intergenic 35.0%
AAATTGAACCGAATTAGACC+TGG + chr2_2:13730832-13730851 Msa0239390:intron 35.0%
CATTATTTCGATGTCTGGTT+AGG + chr2_2:13730935-13730954 Msa0239390:intron 35.0%
TTCCATTGCTTCAGAAACTA+AGG + chr2_2:13731123-13731142 Msa0239390:CDS 35.0%
!! AACCTTAGTTTCTGAAGCAA+TGG - chr2_2:13731128-13731147 None:intergenic 35.0%
TCACAAAAACCTTAGGATCA+GGG + chr2_2:13731157-13731176 Msa0239390:CDS 35.0%
ATCCAAATGTGTCTCCAAAA+TGG + chr2_2:13731199-13731218 Msa0239390:CDS 35.0%
!! TACCATTTTGGAGACACATT+TGG - chr2_2:13731204-13731223 None:intergenic 35.0%
GTCTCCAAAATGGTAAAGTT+TGG + chr2_2:13731209-13731228 Msa0239390:intron 35.0%
! AGTGCCAAACTTTACCATTT+TGG - chr2_2:13731216-13731235 None:intergenic 35.0%
TATGATATGGTACATGGTCT+AGG + chr2_2:13731246-13731265 Msa0239390:intron 35.0%
!! AAGAGTATTATTATGGCAGC+AGG + chr2_2:13731369-13731388 Msa0239390:intron 35.0%
! AGAGTATTATTATGGCAGCA+GGG + chr2_2:13731370-13731389 Msa0239390:intron 35.0%
TATTGCAACTTCAGTGTATG+AGG + chr2_2:13731492-13731511 Msa0239390:CDS 35.0%
AGTGTATGAGGCAATCATTA+AGG + chr2_2:13731504-13731523 Msa0239390:CDS 35.0%
!! TAATTGGTGTTAGCTTAGAG+TGG - chr2_2:13731572-13731591 None:intergenic 35.0%
AATTTAGATTAGGAGGTGGA+AGG + chr2_2:13731816-13731835 Msa0239390:three_prime_UTR 35.0%
TAAATTCTTAATGAGACCGG+CGG - chr2_2:13731852-13731871 None:intergenic 35.0%
TAACGGTAACATACAGGAAT+GGG - chr2_2:13729665-13729684 None:intergenic 35.0%
!!! GTTGTTTTTTGGGTCTTTCT+TGG - chr2_2:13729882-13729901 None:intergenic 35.0%
GCAGAGTTTGATTGAAGATT+TGG + chr2_2:13730157-13730176 Msa0239390:intron 35.0%
! GTTATGGATTGAATTGGGTT+TGG + chr2_2:13730317-13730336 Msa0239390:intron 35.0%
TAGGGATAAAATTGTGTTGG+TGG + chr2_2:13730374-13730393 Msa0239390:intron 35.0%
!! TTTTGCATAAAGCACTACGA+GGG - chr2_2:13730419-13730438 None:intergenic 35.0%
AAAATCATGATCAAGCTGTC+CGG - chr2_2:13730739-13730758 None:intergenic 35.0%
AAATTGAACCGAATTAGACC+TGG + chr2_2:13730832-13730851 Msa0239390:intron 35.0%
CATTATTTCGATGTCTGGTT+AGG + chr2_2:13730935-13730954 Msa0239390:intron 35.0%
TTCCATTGCTTCAGAAACTA+AGG + chr2_2:13731123-13731142 Msa0239390:CDS 35.0%
!! AACCTTAGTTTCTGAAGCAA+TGG - chr2_2:13731128-13731147 None:intergenic 35.0%
TCACAAAAACCTTAGGATCA+GGG + chr2_2:13731157-13731176 Msa0239390:CDS 35.0%
ATCCAAATGTGTCTCCAAAA+TGG + chr2_2:13731199-13731218 Msa0239390:CDS 35.0%
!! TACCATTTTGGAGACACATT+TGG - chr2_2:13731204-13731223 None:intergenic 35.0%
GTCTCCAAAATGGTAAAGTT+TGG + chr2_2:13731209-13731228 Msa0239390:intron 35.0%
! AGTGCCAAACTTTACCATTT+TGG - chr2_2:13731216-13731235 None:intergenic 35.0%
TATGATATGGTACATGGTCT+AGG + chr2_2:13731246-13731265 Msa0239390:intron 35.0%
!! AAGAGTATTATTATGGCAGC+AGG + chr2_2:13731369-13731388 Msa0239390:intron 35.0%
! AGAGTATTATTATGGCAGCA+GGG + chr2_2:13731370-13731389 Msa0239390:intron 35.0%
TATTGCAACTTCAGTGTATG+AGG + chr2_2:13731492-13731511 Msa0239390:CDS 35.0%
AGTGTATGAGGCAATCATTA+AGG + chr2_2:13731504-13731523 Msa0239390:CDS 35.0%
!! TAATTGGTGTTAGCTTAGAG+TGG - chr2_2:13731572-13731591 None:intergenic 35.0%
AATTTAGATTAGGAGGTGGA+AGG + chr2_2:13731816-13731835 Msa0239390:three_prime_UTR 35.0%
TAAATTCTTAATGAGACCGG+CGG - chr2_2:13731852-13731871 None:intergenic 35.0%
GTAACGGTAACATACAGGAA+TGG - chr2_2:13729666-13729685 None:intergenic 40.0%
AAGAGACGTTAGTGGTGTAA+CGG - chr2_2:13729682-13729701 None:intergenic 40.0%
GAAATGGAAAGAGACGTTAG+TGG - chr2_2:13729690-13729709 None:intergenic 40.0%
!! GTTGGAAGAGCATTGTCAAT+AGG - chr2_2:13729853-13729872 None:intergenic 40.0%
GGTCTTTCTTGGGTTATTGT+TGG - chr2_2:13729871-13729890 None:intergenic 40.0%
! TCATCATTGGAAGAAGTACG+AGG - chr2_2:13729958-13729977 None:intergenic 40.0%
!! AATCAATGGTGGGTTCCAAT+GGG - chr2_2:13729990-13730009 None:intergenic 40.0%
!! TAATCAATGGTGGGTTCCAA+TGG - chr2_2:13729991-13730010 None:intergenic 40.0%
CTTACTTGAATCTGAGCTTC+AGG - chr2_2:13730048-13730067 None:intergenic 40.0%
GGATTCAAAAAACTGGGTCA+AGG + chr2_2:13730178-13730197 Msa0239390:CDS 40.0%
AAATCGCCTAACATCGTTCA+AGG - chr2_2:13730213-13730232 None:intergenic 40.0%
! GGATAAAATTGTGTTGGTGG+TGG + chr2_2:13730377-13730396 Msa0239390:CDS 40.0%
!! GTTTTGCATAAAGCACTACG+AGG - chr2_2:13730420-13730439 None:intergenic 40.0%
ATCAGAAGCAGCCATAATAG+AGG - chr2_2:13730442-13730461 None:intergenic 40.0%
GTTTGATCCTTCCATTTCTG+AGG + chr2_2:13730488-13730507 Msa0239390:CDS 40.0%
TCAAATGCCTCAGAAATGGA+AGG - chr2_2:13730498-13730517 None:intergenic 40.0%
!! TCCATTTCTGAGGCATTTGA+TGG + chr2_2:13730498-13730517 Msa0239390:CDS 40.0%
AAATTGAACCGAACTAGACC+TGG + chr2_2:13730570-13730589 Msa0239390:intron 40.0%
! GTCCTGATTTGAGCTGTTTA+AGG + chr2_2:13730628-13730647 Msa0239390:intron 40.0%
! CTGATTTGAGCTGTTTAAGG+CGG + chr2_2:13730631-13730650 Msa0239390:intron 40.0%
! TGATTTGAGCTGTTTAAGGC+GGG + chr2_2:13730632-13730651 Msa0239390:intron 40.0%
AGGTTCAACCAGGTCTAATT+CGG - chr2_2:13730843-13730862 None:intergenic 40.0%
GACCTGGTTGAACCTTTAAT+CGG + chr2_2:13730848-13730867 Msa0239390:intron 40.0%
TGATTGAGCTGTCCGATTAA+AGG - chr2_2:13730863-13730882 None:intergenic 40.0%
GGTCTCATTATTTCGATGTC+TGG + chr2_2:13730930-13730949 Msa0239390:intron 40.0%
TTGTGTGTGAAGAAGCTGAT+AGG + chr2_2:13731066-13731085 Msa0239390:CDS 40.0%
TGTGTGTGAAGAAGCTGATA+GGG + chr2_2:13731067-13731086 Msa0239390:CDS 40.0%
!! AGTTTCTGAAGCAATGGAAG+AGG - chr2_2:13731122-13731141 None:intergenic 40.0%
CTGTGAGTCACAAAAACCTT+AGG + chr2_2:13731150-13731169 Msa0239390:CDS 40.0%
GTCACAAAAACCTTAGGATC+AGG + chr2_2:13731156-13731175 Msa0239390:CDS 40.0%
ATTGAGGAAATGGAGGAGTT+TGG + chr2_2:13731394-13731413 Msa0239390:CDS 40.0%
TTGAGGAAATGGAGGAGTTT+GGG + chr2_2:13731395-13731414 Msa0239390:CDS 40.0%
TGAGGCAATCATTAAGGATG+TGG + chr2_2:13731510-13731529 Msa0239390:CDS 40.0%
CAATCATTAAGGATGTGGAG+AGG + chr2_2:13731515-13731534 Msa0239390:CDS 40.0%
TGTACGTTTGCTCATACTTG+AGG + chr2_2:13731636-13731655 Msa0239390:three_prime_UTR 40.0%
TTTATTTGTGGCAGTGCTCA+TGG + chr2_2:13731677-13731696 Msa0239390:three_prime_UTR 40.0%
GTAACGGTAACATACAGGAA+TGG - chr2_2:13729666-13729685 None:intergenic 40.0%
AAGAGACGTTAGTGGTGTAA+CGG - chr2_2:13729682-13729701 None:intergenic 40.0%
GAAATGGAAAGAGACGTTAG+TGG - chr2_2:13729690-13729709 None:intergenic 40.0%
!! GTTGGAAGAGCATTGTCAAT+AGG - chr2_2:13729853-13729872 None:intergenic 40.0%
GGTCTTTCTTGGGTTATTGT+TGG - chr2_2:13729871-13729890 None:intergenic 40.0%
! TCATCATTGGAAGAAGTACG+AGG - chr2_2:13729958-13729977 None:intergenic 40.0%
!! AATCAATGGTGGGTTCCAAT+GGG - chr2_2:13729990-13730009 None:intergenic 40.0%
!! TAATCAATGGTGGGTTCCAA+TGG - chr2_2:13729991-13730010 None:intergenic 40.0%
CTTACTTGAATCTGAGCTTC+AGG - chr2_2:13730048-13730067 None:intergenic 40.0%
GGATTCAAAAAACTGGGTCA+AGG + chr2_2:13730178-13730197 Msa0239390:CDS 40.0%
AAATCGCCTAACATCGTTCA+AGG - chr2_2:13730213-13730232 None:intergenic 40.0%
! GGATAAAATTGTGTTGGTGG+TGG + chr2_2:13730377-13730396 Msa0239390:CDS 40.0%
!! GTTTTGCATAAAGCACTACG+AGG - chr2_2:13730420-13730439 None:intergenic 40.0%
ATCAGAAGCAGCCATAATAG+AGG - chr2_2:13730442-13730461 None:intergenic 40.0%
GTTTGATCCTTCCATTTCTG+AGG + chr2_2:13730488-13730507 Msa0239390:CDS 40.0%
TCAAATGCCTCAGAAATGGA+AGG - chr2_2:13730498-13730517 None:intergenic 40.0%
!! TCCATTTCTGAGGCATTTGA+TGG + chr2_2:13730498-13730517 Msa0239390:CDS 40.0%
AAATTGAACCGAACTAGACC+TGG + chr2_2:13730570-13730589 Msa0239390:intron 40.0%
! GTCCTGATTTGAGCTGTTTA+AGG + chr2_2:13730628-13730647 Msa0239390:intron 40.0%
! CTGATTTGAGCTGTTTAAGG+CGG + chr2_2:13730631-13730650 Msa0239390:intron 40.0%
! TGATTTGAGCTGTTTAAGGC+GGG + chr2_2:13730632-13730651 Msa0239390:intron 40.0%
AGGTTCAACCAGGTCTAATT+CGG - chr2_2:13730843-13730862 None:intergenic 40.0%
GACCTGGTTGAACCTTTAAT+CGG + chr2_2:13730848-13730867 Msa0239390:intron 40.0%
TGATTGAGCTGTCCGATTAA+AGG - chr2_2:13730863-13730882 None:intergenic 40.0%
GGTCTCATTATTTCGATGTC+TGG + chr2_2:13730930-13730949 Msa0239390:intron 40.0%
TTGTGTGTGAAGAAGCTGAT+AGG + chr2_2:13731066-13731085 Msa0239390:CDS 40.0%
TGTGTGTGAAGAAGCTGATA+GGG + chr2_2:13731067-13731086 Msa0239390:CDS 40.0%
!! AGTTTCTGAAGCAATGGAAG+AGG - chr2_2:13731122-13731141 None:intergenic 40.0%
CTGTGAGTCACAAAAACCTT+AGG + chr2_2:13731150-13731169 Msa0239390:CDS 40.0%
GTCACAAAAACCTTAGGATC+AGG + chr2_2:13731156-13731175 Msa0239390:CDS 40.0%
ATTGAGGAAATGGAGGAGTT+TGG + chr2_2:13731394-13731413 Msa0239390:CDS 40.0%
TTGAGGAAATGGAGGAGTTT+GGG + chr2_2:13731395-13731414 Msa0239390:CDS 40.0%
TGAGGCAATCATTAAGGATG+TGG + chr2_2:13731510-13731529 Msa0239390:CDS 40.0%
CAATCATTAAGGATGTGGAG+AGG + chr2_2:13731515-13731534 Msa0239390:CDS 40.0%
TGTACGTTTGCTCATACTTG+AGG + chr2_2:13731636-13731655 Msa0239390:three_prime_UTR 40.0%
TTTATTTGTGGCAGTGCTCA+TGG + chr2_2:13731677-13731696 Msa0239390:three_prime_UTR 40.0%
GTGGTGTAACGGTAACATAC+AGG - chr2_2:13729671-13729690 None:intergenic 45.0%
TGAGCTTCAGGATCTGACAT+GGG - chr2_2:13730036-13730055 None:intergenic 45.0%
GTGAGTCCTTGAACGATGTT+AGG + chr2_2:13730204-13730223 Msa0239390:CDS 45.0%
!! AATTGTGTTGGTGGTGGTGA+AGG + chr2_2:13730383-13730402 Msa0239390:CDS 45.0%
GCCATCAAATGCCTCAGAAA+TGG - chr2_2:13730502-13730521 None:intergenic 45.0%
!! TTCTGAGGCATTTGATGGCT+TGG + chr2_2:13730503-13730522 Msa0239390:CDS 45.0%
AGGTTCAACCAGGTCTAGTT+CGG - chr2_2:13730581-13730600 None:intergenic 45.0%
GACCTGGTTGAACCTTAAAC+CGG + chr2_2:13730586-13730605 Msa0239390:intron 45.0%
AAAATCGTGATCGAGCTGTC+CGG - chr2_2:13730608-13730627 None:intergenic 45.0%
CGCCTTAAACAGCTCAAATC+AGG - chr2_2:13730633-13730652 None:intergenic 45.0%
! GACTTGGTTAAACCTTGAGC+CGG + chr2_2:13730717-13730736 Msa0239390:intron 45.0%
! GTCCTGATTCGAGCTGTTTA+AGG + chr2_2:13730759-13730778 Msa0239390:intron 45.0%
! CTGATTCGAGCTGTTTAAGG+CGG + chr2_2:13730762-13730781 Msa0239390:intron 45.0%
! TGATTCGAGCTGTTTAAGGC+GGG + chr2_2:13730763-13730782 Msa0239390:intron 45.0%
GTCCGATTAAAGGTTCAACC+AGG - chr2_2:13730853-13730872 None:intergenic 45.0%
! GTCCTGATTCGAGCTGTTTA+AGG + chr2_2:13730759-13730778 Msa0239390:intron 45.0%
! CTGATTCGAGCTGTTTAAGG+CGG + chr2_2:13730762-13730781 Msa0239390:intron 45.0%
! TGATTCGAGCTGTTTAAGGC+GGG + chr2_2:13730763-13730782 Msa0239390:intron 45.0%
! TGATAGGGCACTTGGATCAA+TGG + chr2_2:13731082-13731101 Msa0239390:CDS 45.0%
!! AAGCAATGGAAGAGGTGTCA+TGG - chr2_2:13731114-13731133 None:intergenic 45.0%
ATTATGGCAGCAGGGAATTG+AGG + chr2_2:13731378-13731397 Msa0239390:intron 45.0%
AGTGAATGATAGACTCCCAG+AGG + chr2_2:13731450-13731469 Msa0239390:CDS 45.0%
ATGTGGAGAGGAACAGAAGA+TGG + chr2_2:13731527-13731546 Msa0239390:CDS 45.0%
AGGAACAGAAGATGGAAGTG+TGG + chr2_2:13731535-13731554 Msa0239390:CDS 45.0%
GTGGTGTAACGGTAACATAC+AGG - chr2_2:13729671-13729690 None:intergenic 45.0%
TGAGCTTCAGGATCTGACAT+GGG - chr2_2:13730036-13730055 None:intergenic 45.0%
GTGAGTCCTTGAACGATGTT+AGG + chr2_2:13730204-13730223 Msa0239390:CDS 45.0%
!! AATTGTGTTGGTGGTGGTGA+AGG + chr2_2:13730383-13730402 Msa0239390:CDS 45.0%
GCCATCAAATGCCTCAGAAA+TGG - chr2_2:13730502-13730521 None:intergenic 45.0%
!! TTCTGAGGCATTTGATGGCT+TGG + chr2_2:13730503-13730522 Msa0239390:CDS 45.0%
AGGTTCAACCAGGTCTAGTT+CGG - chr2_2:13730581-13730600 None:intergenic 45.0%
GACCTGGTTGAACCTTAAAC+CGG + chr2_2:13730586-13730605 Msa0239390:intron 45.0%
AAAATCGTGATCGAGCTGTC+CGG - chr2_2:13730608-13730627 None:intergenic 45.0%
CGCCTTAAACAGCTCAAATC+AGG - chr2_2:13730633-13730652 None:intergenic 45.0%
! GACTTGGTTAAACCTTGAGC+CGG + chr2_2:13730717-13730736 Msa0239390:intron 45.0%
! GTCCTGATTCGAGCTGTTTA+AGG + chr2_2:13730759-13730778 Msa0239390:intron 45.0%
! CTGATTCGAGCTGTTTAAGG+CGG + chr2_2:13730762-13730781 Msa0239390:intron 45.0%
! TGATTCGAGCTGTTTAAGGC+GGG + chr2_2:13730763-13730782 Msa0239390:intron 45.0%
GTCCGATTAAAGGTTCAACC+AGG - chr2_2:13730853-13730872 None:intergenic 45.0%
! GTCCTGATTCGAGCTGTTTA+AGG + chr2_2:13730759-13730778 Msa0239390:intron 45.0%
! CTGATTCGAGCTGTTTAAGG+CGG + chr2_2:13730762-13730781 Msa0239390:intron 45.0%
! TGATTCGAGCTGTTTAAGGC+GGG + chr2_2:13730763-13730782 Msa0239390:intron 45.0%
! TGATAGGGCACTTGGATCAA+TGG + chr2_2:13731082-13731101 Msa0239390:CDS 45.0%
!! AAGCAATGGAAGAGGTGTCA+TGG - chr2_2:13731114-13731133 None:intergenic 45.0%
ATTATGGCAGCAGGGAATTG+AGG + chr2_2:13731378-13731397 Msa0239390:intron 45.0%
AGTGAATGATAGACTCCCAG+AGG + chr2_2:13731450-13731469 Msa0239390:CDS 45.0%
ATGTGGAGAGGAACAGAAGA+TGG + chr2_2:13731527-13731546 Msa0239390:CDS 45.0%
AGGAACAGAAGATGGAAGTG+TGG + chr2_2:13731535-13731554 Msa0239390:CDS 45.0%
!! TTTATAATTATAATTAACAA+CGG + chr2_2:13731775-13731794 Msa0239390:three_prime_UTR 5.0%
!! TTTATAATTATAATTAACAA+CGG + chr2_2:13731775-13731794 Msa0239390:three_prime_UTR 5.0%
!! ATACAGGAATGGGCTGGAAG+GGG - chr2_2:13729655-13729674 None:intergenic 50.0%
!! CATACAGGAATGGGCTGGAA+GGG - chr2_2:13729656-13729675 None:intergenic 50.0%
!! ACATACAGGAATGGGCTGGA+AGG - chr2_2:13729657-13729676 None:intergenic 50.0%
GGTAACATACAGGAATGGGC+TGG - chr2_2:13729661-13729680 None:intergenic 50.0%
! GGGGTTGAGACAGCGATTTT+AGG - chr2_2:13729904-13729923 None:intergenic 50.0%
!! CTGTTGCTGCTGTGGTTTTG+GGG - chr2_2:13729923-13729942 None:intergenic 50.0%
! GCTGTTGCTGCTGTGGTTTT+GGG - chr2_2:13729924-13729943 None:intergenic 50.0%
! TGCTGTTGCTGCTGTGGTTT+TGG - chr2_2:13729925-13729944 None:intergenic 50.0%
CAGGATCTGACATGGGTTTC+AGG - chr2_2:13730029-13730048 None:intergenic 50.0%
CTGAGCTTCAGGATCTGACA+TGG - chr2_2:13730037-13730056 None:intergenic 50.0%
! GTCCGGTTTAAGGTTCAACC+AGG - chr2_2:13730591-13730610 None:intergenic 50.0%
TGATCGAGCTGTCCGGTTTA+AGG - chr2_2:13730601-13730620 None:intergenic 50.0%
CGCCTTAAACAGCTCGAATC+AGG - chr2_2:13730764-13730783 None:intergenic 50.0%
AAGGCGGGTGAATGACTATG+AGG + chr2_2:13730778-13730797 Msa0239390:intron 50.0%
CGCCTTAAACAGCTCGAATC+AGG - chr2_2:13730764-13730783 None:intergenic 50.0%
! TTTAAGGCGGGTGAACGACT+AGG + chr2_2:13730644-13730663 Msa0239390:intron 50.0%
GCTGCTGCTGAAATCTTCTC+AGG + chr2_2:13731034-13731053 Msa0239390:CDS 50.0%
! GAAGAAGCTGATAGGGCACT+TGG + chr2_2:13731074-13731093 Msa0239390:CDS 50.0%
! TAGGGCACTTGGATCAATGG+TGG + chr2_2:13731085-13731104 Msa0239390:CDS 50.0%
! AGGGCACTTGGATCAATGGT+GGG + chr2_2:13731086-13731105 Msa0239390:CDS 50.0%
! CAGCTTTAGCCCTGATCCTA+AGG - chr2_2:13731169-13731188 None:intergenic 50.0%
GCAGCAGGGAATTGAGGAAA+TGG + chr2_2:13731384-13731403 Msa0239390:intron 50.0%
GCAGGGAATTGAGGAAATGG+AGG + chr2_2:13731387-13731406 Msa0239390:intron 50.0%
GGAAATGGAGGAGTTTGGGA+TGG + chr2_2:13731399-13731418 Msa0239390:CDS 50.0%
TTGCTGCATCTCTTGCCTCT+GGG - chr2_2:13731468-13731487 None:intergenic 50.0%
!! ATACAGGAATGGGCTGGAAG+GGG - chr2_2:13729655-13729674 None:intergenic 50.0%
!! CATACAGGAATGGGCTGGAA+GGG - chr2_2:13729656-13729675 None:intergenic 50.0%
!! ACATACAGGAATGGGCTGGA+AGG - chr2_2:13729657-13729676 None:intergenic 50.0%
GGTAACATACAGGAATGGGC+TGG - chr2_2:13729661-13729680 None:intergenic 50.0%
! GGGGTTGAGACAGCGATTTT+AGG - chr2_2:13729904-13729923 None:intergenic 50.0%
!! CTGTTGCTGCTGTGGTTTTG+GGG - chr2_2:13729923-13729942 None:intergenic 50.0%
! GCTGTTGCTGCTGTGGTTTT+GGG - chr2_2:13729924-13729943 None:intergenic 50.0%
! TGCTGTTGCTGCTGTGGTTT+TGG - chr2_2:13729925-13729944 None:intergenic 50.0%
CAGGATCTGACATGGGTTTC+AGG - chr2_2:13730029-13730048 None:intergenic 50.0%
CTGAGCTTCAGGATCTGACA+TGG - chr2_2:13730037-13730056 None:intergenic 50.0%
! GTCCGGTTTAAGGTTCAACC+AGG - chr2_2:13730591-13730610 None:intergenic 50.0%
TGATCGAGCTGTCCGGTTTA+AGG - chr2_2:13730601-13730620 None:intergenic 50.0%
CGCCTTAAACAGCTCGAATC+AGG - chr2_2:13730764-13730783 None:intergenic 50.0%
AAGGCGGGTGAATGACTATG+AGG + chr2_2:13730778-13730797 Msa0239390:intron 50.0%
CGCCTTAAACAGCTCGAATC+AGG - chr2_2:13730764-13730783 None:intergenic 50.0%
! TTTAAGGCGGGTGAACGACT+AGG + chr2_2:13730644-13730663 Msa0239390:intron 50.0%
GCTGCTGCTGAAATCTTCTC+AGG + chr2_2:13731034-13731053 Msa0239390:CDS 50.0%
! GAAGAAGCTGATAGGGCACT+TGG + chr2_2:13731074-13731093 Msa0239390:CDS 50.0%
! TAGGGCACTTGGATCAATGG+TGG + chr2_2:13731085-13731104 Msa0239390:CDS 50.0%
! AGGGCACTTGGATCAATGGT+GGG + chr2_2:13731086-13731105 Msa0239390:CDS 50.0%
! CAGCTTTAGCCCTGATCCTA+AGG - chr2_2:13731169-13731188 None:intergenic 50.0%
GCAGCAGGGAATTGAGGAAA+TGG + chr2_2:13731384-13731403 Msa0239390:intron 50.0%
GCAGGGAATTGAGGAAATGG+AGG + chr2_2:13731387-13731406 Msa0239390:intron 50.0%
GGAAATGGAGGAGTTTGGGA+TGG + chr2_2:13731399-13731418 Msa0239390:CDS 50.0%
TTGCTGCATCTCTTGCCTCT+GGG - chr2_2:13731468-13731487 None:intergenic 50.0%
! TGCTGTTGCTGTTGCTGCTG+TGG - chr2_2:13729931-13729950 None:intergenic 55.0%
AAGGCGGGTGAACGACTATG+AGG + chr2_2:13730647-13730666 Msa0239390:intron 55.0%
TGATCAAGCTGTCCGGCTCA+AGG - chr2_2:13730732-13730751 None:intergenic 55.0%
CTTGCTGCATCTCTTGCCTC+TGG - chr2_2:13731469-13731488 None:intergenic 55.0%
GGAAGGTTAGAGAAAGCCGC+CGG + chr2_2:13731833-13731852 Msa0239390:three_prime_UTR 55.0%
! TGCTGTTGCTGTTGCTGCTG+TGG - chr2_2:13729931-13729950 None:intergenic 55.0%
AAGGCGGGTGAACGACTATG+AGG + chr2_2:13730647-13730666 Msa0239390:intron 55.0%
TGATCAAGCTGTCCGGCTCA+AGG - chr2_2:13730732-13730751 None:intergenic 55.0%
CTTGCTGCATCTCTTGCCTC+TGG - chr2_2:13731469-13731488 None:intergenic 55.0%
GGAAGGTTAGAGAAAGCCGC+CGG + chr2_2:13731833-13731852 Msa0239390:three_prime_UTR 55.0%
AAGGCGGGTGAACGACTAGG+AGG + chr2_2:13730909-13730928 Msa0239390:intron 60.0%
AAGGCGGGTGAACGACTAGG+AGG + chr2_2:13730909-13730928 Msa0239390:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 13729627 13731887 13729627 ID=Msa0239390;Name=Msa0239390
chr2_2 mRNA 13729627 13731887 13729627 ID=Msa0239390-mRNA-1;Parent=Msa0239390;Name=Msa0239390-mRNA-1;_AED=0.16;_eAED=0.16;_QI=211|1|1|1|1|1|5|305|288
chr2_2 exon 13729627 13730062 13729627 ID=Msa0239390-mRNA-1:exon:5715;Parent=Msa0239390-mRNA-1
chr2_2 exon 13730161 13730267 13730161 ID=Msa0239390-mRNA-1:exon:5716;Parent=Msa0239390-mRNA-1
chr2_2 exon 13730377 13730524 13730377 ID=Msa0239390-mRNA-1:exon:5717;Parent=Msa0239390-mRNA-1
chr2_2 exon 13731026 13731220 13731026 ID=Msa0239390-mRNA-1:exon:5718;Parent=Msa0239390-mRNA-1
chr2_2 exon 13731391 13731887 13731391 ID=Msa0239390-mRNA-1:exon:5719;Parent=Msa0239390-mRNA-1
chr2_2 five_prime_UTR 13729627 13729837 13729627 ID=Msa0239390-mRNA-1:five_prime_utr;Parent=Msa0239390-mRNA-1
chr2_2 CDS 13729838 13730062 13729838 ID=Msa0239390-mRNA-1:cds;Parent=Msa0239390-mRNA-1
chr2_2 CDS 13730161 13730267 13730161 ID=Msa0239390-mRNA-1:cds;Parent=Msa0239390-mRNA-1
chr2_2 CDS 13730377 13730524 13730377 ID=Msa0239390-mRNA-1:cds;Parent=Msa0239390-mRNA-1
chr2_2 CDS 13731026 13731220 13731026 ID=Msa0239390-mRNA-1:cds;Parent=Msa0239390-mRNA-1
chr2_2 CDS 13731391 13731582 13731391 ID=Msa0239390-mRNA-1:cds;Parent=Msa0239390-mRNA-1
chr2_2 three_prime_UTR 13731583 13731887 13731583 ID=Msa0239390-mRNA-1:three_prime_utr;Parent=Msa0239390-mRNA-1
Gene Sequence

>Msa0239390

ATGGCACTTAGACCTATTGACAATGCTCTTCCAACAATAACCCAAGAAAGACCCAAAAAACAACCTAAAATCGCTGTCTCAACCCCAAAACCACAGCAGCAACAGCAACAGCAACAACCTCGTACTTCTTCCAATGATGAAAATCAAATCCCATTGGAACCCACCATTGATTATATTTCATCTGACAACCTGAAACCCATGTCAGATCCTGAAGCTCAGATTCAAAGTTTGATTGAAGATTTGGATTCAAAAAACTGGGTCAAGGTTTGTGAGTCCTTGAACGATGTTAGGCGATTTGCGTTGTTCAATTCGTCTCTTCTATTACCCATTTTGGATAAAATTGTGTTGGTGGTGGTGAAGGCAATGAAGAACCCTCGTAGTGCTTTATGCAAAACCTCTATTATGGCTGCTTCTGATATTTTCAATGCTTTTGGTGATAAATTGTTTGATCCTTCCATTTCTGAGGCATTTGATGGCTTGCTGTTGCAGCTGCTGCTGAAATCTTCTCAGGATAAAAAGTTTGTGTGTGAAGAAGCTGATAGGGCACTTGGATCAATGGTGGGTTCCATGACACCTCTTCCATTGCTTCAGAAACTAAGGTTATCTGTGAGTCACAAAAACCTTAGGATCAGGGCTAAAGCTGCTGTTTCTCTATCCAAATGTGTCTCCAAAATGGGAATTGAGGAAATGGAGGAGTTTGGGATGGAAAAGTTGATTGAAGTTGCAGCTGATTTAGTGAATGATAGACTCCCAGAGGCAAGAGATGCAGCAAGAAGTATTGCAACTTCAGTGTATGAGGCAATCATTAAGGATGTGGAGAGGAACAGAAGATGGAAGTGTGGCAGAGTTTCTGCCACTCTAAGCTAA
Protein sequence

>Msa0239390

MALRPIDNALPTITQERPKKQPKIAVSTPKPQQQQQQQQPRTSSNDENQIPLEPTIDYISSDNLKPMSDPEAQIQSLIEDLDSKNWVKVCESLNDVRRFALFNSSLLLPILDKIVLVVVKAMKNPRSALCKTSIMAASDIFNAFGDKLFDPSISEAFDGLLLQLLLKSSQDKKFVCEEADRALGSMVGSMTPLPLLQKLRLSVSHKNLRIRAKAAVSLSKCVSKMGIEEMEEFGMEKLIEVAADLVNDRLPEARDAARSIATSVYEAIIKDVERNRRWKCGRVSATLS*