Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219560 | XP_013463249.1 | 96.013 | 301 | 5 | 1 | 1 | 301 | 1 | 294 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219560 | sp|Q6A070|TGRM1_MOUSE | 27.861 | 201 | 136 | 3 | 62 | 258 | 1252 | 1447 | 4.48e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219560 | A0A072V6L5 | 96.013 | 301 | 5 | 1 | 1 | 301 | 1 | 294 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219560 | Msa0239390 | 0.948179 | 1.575224e-106 | -8.615850e-47 |
| Msa0219560 | Msa0279180 | 0.974108 | 1.405707e-137 | -8.615850e-47 |
| Msa0219560 | Msa0321110 | 0.992461 | 1.977556e-193 | -8.615850e-47 |
| Msa0219560 | Msa0581840 | 0.800203 | 1.608740e-48 | -8.615850e-47 |
| Msa0219560 | Msa0606100 | 0.816890 | 4.380010e-52 | -8.615850e-47 |
| Msa0219560 | Msa0714520 | 0.800015 | 1.757314e-48 | -8.615850e-47 |
| Msa0219560 | Msa0805680 | 0.827276 | 1.710636e-54 | -8.615850e-47 |
| Msa0219560 | Msa1263900 | 0.803385 | 3.575678e-49 | -8.615850e-47 |
| Msa0219560 | Msa1339170 | 0.808077 | 3.697626e-50 | -8.615850e-47 |
| Msa0219560 | Msa1367180 | 0.802177 | 6.347914e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219560 | MtrunA17_Chr2g0295931 | 96.013 | 301 | 5 | 1 | 1 | 301 | 1 | 294 | 0.0 | 572 |
| Msa0219560 | MtrunA17_Chr6g0451021 | 35.227 | 352 | 163 | 6 | 5 | 301 | 31 | 372 | 4.74e-58 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219560 | AT4G15830.1 | 56.066 | 305 | 116 | 5 | 1 | 299 | 1 | 293 | 3.76e-110 | 321 |
| Msa0219560 | AT3G01450.1 | 40.711 | 253 | 140 | 2 | 54 | 301 | 67 | 314 | 3.11e-62 | 200 |
| Msa0219560 | AT3G01450.2 | 40.711 | 253 | 140 | 2 | 54 | 301 | 67 | 314 | 3.11e-62 | 200 |
| Msa0219560 | AT5G14790.1 | 39.695 | 262 | 139 | 4 | 54 | 301 | 70 | 326 | 3.83e-62 | 201 |
| Msa0219560 | AT3G18530.3 | 48.227 | 141 | 68 | 1 | 94 | 234 | 9 | 144 | 5.93e-35 | 127 |
| Msa0219560 | AT3G18530.2 | 49.231 | 130 | 61 | 1 | 105 | 234 | 1 | 125 | 3.89e-32 | 119 |
| Msa0219560 | AT3G18530.1 | 50.000 | 124 | 57 | 1 | 111 | 234 | 124 | 242 | 1.89e-29 | 115 |
Find 86 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATCTGACATGGGTTTC+AGG | 0.101075 | 2_1:+67215847 | None:intergenic |
| TGCTGTTGCTGCTGTGGTTT+TGG | 0.159324 | 2_1:+67215945 | None:intergenic |
| AGTGCCAAACTTTACCATTT+TGG | 0.211534 | 2_1:+67214793 | None:intergenic |
| TTTGGGTCTTTCTTGGGTTA+TGG | 0.250336 | 2_1:+67215995 | None:intergenic |
| GCAGAGTTTGATTGAAGATT+TGG | 0.260333 | 2_1:-67215720 | Msa0219560:intron |
| ATTGAGGAAATGGAGGAGTT+TGG | 0.270099 | 2_1:-67214612 | Msa0219560:CDS |
| AAAATTGAAAGAGCATTAAT+TGG | 0.272815 | 2_1:+67214420 | None:intergenic |
| TCCATTTCTGAGGCATTTGA+TGG | 0.287057 | 2_1:-67215379 | Msa0219560:CDS |
| TTTATGCAAAACCTCTATTA+TGG | 0.287797 | 2_1:-67215449 | Msa0219560:CDS |
| CTTGCTGCATCTCTTGCCTC+TGG | 0.306269 | 2_1:+67214540 | None:intergenic |
| TTCTGAGGCATTTGATGGCT+TGG | 0.330088 | 2_1:-67215374 | Msa0219560:intron |
| ATCCAAATGTGTCTCCAAAA+TGG | 0.333713 | 2_1:-67214807 | Msa0219560:intron |
| TTGAGGAAATGGAGGAGTTT+GGG | 0.339563 | 2_1:-67214611 | Msa0219560:CDS |
| CTTACTTGAATCTGAGCTTC+AGG | 0.347459 | 2_1:+67215828 | None:intergenic |
| ATCGATCAATGTAATAGAAA+TGG | 0.369859 | 2_1:+67216077 | None:intergenic |
| TGAATAAGATGTTATAGAAA+TGG | 0.374697 | 2_1:+67216163 | None:intergenic |
| TTCCATTGCTTCAGAAACTA+AGG | 0.397711 | 2_1:-67214883 | Msa0219560:CDS |
| GCCATCAAATGCCTCAGAAA+TGG | 0.405071 | 2_1:+67215378 | None:intergenic |
| AGATAGTTAAACTTTAGAAT+TGG | 0.410763 | 2_1:-67214395 | Msa0219560:exon |
| TGTGGAAGAGGAACAGAAGA+TGG | 0.425574 | 2_1:-67214478 | Msa0219560:CDS |
| TTTATTTGTGGCAGTGCTCA+TGG | 0.431114 | 2_1:-67214328 | Msa0219560:three_prime_UTR |
| TTGCTGCATCTCTTGCCTCT+GGG | 0.433357 | 2_1:+67214541 | None:intergenic |
| GGTCTTTCTTGGGTTATGGT+TGG | 0.436130 | 2_1:+67215999 | None:intergenic |
| GTGAGTCCTTGAACGATGTT+AGG | 0.437164 | 2_1:-67215673 | Msa0219560:CDS |
| AAAATCAATCCTTACAAAAT+GGG | 0.442598 | 2_1:+67215617 | None:intergenic |
| CAGCTTTAGCCCTGATCCTA+AGG | 0.446309 | 2_1:+67214840 | None:intergenic |
| TTGTGTGTGAAGAAGCTGAT+AGG | 0.451109 | 2_1:-67214940 | Msa0219560:CDS |
| TTGTAAATTCTTAATGAGAC+CGG | 0.461778 | 2_1:+67214153 | None:intergenic |
| GTTGGAAGAGCATTGTCAAT+AGG | 0.465838 | 2_1:+67216017 | None:intergenic |
| TAGAAGTTTAGCTTTATTTG+TGG | 0.467412 | 2_1:-67214340 | Msa0219560:three_prime_UTR |
| TGATAGGGCACTTGGATCAA+TGG | 0.469114 | 2_1:-67214924 | Msa0219560:CDS |
| AAATCGCCTAACATCGTTCA+AGG | 0.470782 | 2_1:+67215667 | None:intergenic |
| GCAGCAGGGAATTGAGGAAA+TGG | 0.471845 | 2_1:-67214622 | Msa0219560:intron |
| TAAAGAAAATTTAGATTAGG+AGG | 0.477102 | 2_1:-67214196 | Msa0219560:three_prime_UTR |
| CATACAGGAATGGGCTGGAA+GGG | 0.477162 | 2_1:+67216213 | None:intergenic |
| TAATCAATGGTGGGTTCCAA+TGG | 0.479929 | 2_1:+67215885 | None:intergenic |
| AACCTTAGTTTCTGAAGCAA+TGG | 0.485737 | 2_1:+67214881 | None:intergenic |
| AGAAAATTTAGATTAGGAGG+TGG | 0.490993 | 2_1:-67214193 | Msa0219560:three_prime_UTR |
| ATTATGGCAGCAGGGAATTG+AGG | 0.494357 | 2_1:-67214628 | Msa0219560:intron |
| TAACGGTAACATACAGGAAT+GGG | 0.495863 | 2_1:+67216204 | None:intergenic |
| GCTGCTGCTGAAATCTTCTC+AGG | 0.502458 | 2_1:-67214972 | Msa0219560:CDS |
| TATTGCAACTTCAGTGTATG+AGG | 0.503870 | 2_1:-67214514 | Msa0219560:CDS |
| AGTGTATGAGGCAATCATTA+AGG | 0.512370 | 2_1:-67214502 | Msa0219560:CDS |
| GTCAGATGAAATATAATCAA+TGG | 0.512715 | 2_1:+67215872 | None:intergenic |
| GGTTGTTGCTGTTGCTGCTG+TGG | 0.527140 | 2_1:+67215939 | None:intergenic |
| TGAGGCAATCATTAAGGATG+TGG | 0.528288 | 2_1:-67214496 | Msa0219560:CDS |
| ATCAGAAGCAGCCATAATAG+AGG | 0.530469 | 2_1:+67215438 | None:intergenic |
| AATCATTAAGGATGTGGAAG+AGG | 0.535129 | 2_1:-67214490 | Msa0219560:CDS |
| TAGGGATAAAATTGTGTTGG+TGG | 0.538015 | 2_1:-67215503 | Msa0219560:CDS |
| AATTTAGATTAGGAGGTGGA+AGG | 0.538518 | 2_1:-67214189 | Msa0219560:three_prime_UTR |
| GTTTGATCCTTCCATTTCTG+AGG | 0.538757 | 2_1:-67215389 | Msa0219560:CDS |
| GGAAATGGAGGAGTTTGGGA+TGG | 0.539001 | 2_1:-67214607 | Msa0219560:CDS |
| AATCAATGGTGGGTTCCAAT+GGG | 0.540052 | 2_1:+67215886 | None:intergenic |
| GAAGAAGCTGATAGGGCACT+TGG | 0.542782 | 2_1:-67214932 | Msa0219560:CDS |
| TGTACGTTTGCTCATACTTG+AGG | 0.543866 | 2_1:-67214369 | Msa0219560:three_prime_UTR |
| TGATGAAAATCAAATCCCAT+TGG | 0.544278 | 2_1:-67215901 | Msa0219560:CDS |
| GTGGTGTAACGGTAACATAC+AGG | 0.546224 | 2_1:+67216198 | None:intergenic |
| CTGAGCTTCAGGATCTGACA+TGG | 0.548880 | 2_1:+67215839 | None:intergenic |
| ACATACAGGAATGGGCTGGA+AGG | 0.549563 | 2_1:+67216212 | None:intergenic |
| AATTGTGTTGGTGGTGGTGA+AGG | 0.551275 | 2_1:-67215494 | Msa0219560:CDS |
| AGTTTCTGAAGCAATGGAAG+AGG | 0.555513 | 2_1:+67214887 | None:intergenic |
| ATACAGGAATGGGCTGGAAG+GGG | 0.560423 | 2_1:+67216214 | None:intergenic |
| GGATAAAATTGTGTTGGTGG+TGG | 0.561353 | 2_1:-67215500 | Msa0219560:CDS |
| AAGCAATGGAAGAGGTGTCA+TGG | 0.567617 | 2_1:+67214895 | None:intergenic |
| GAAATCTAATAATTTGCTGA+TGG | 0.572246 | 2_1:+67214291 | None:intergenic |
| AGATGAAATATAATCAATGG+TGG | 0.574708 | 2_1:+67215875 | None:intergenic |
| AGGAACAGAAGATGGAAGTG+TGG | 0.576946 | 2_1:-67214470 | Msa0219560:CDS |
| GTAACGGTAACATACAGGAA+TGG | 0.579763 | 2_1:+67216203 | None:intergenic |
| GATTAGGGATAAAATTGTGT+TGG | 0.587172 | 2_1:-67215506 | Msa0219560:intron |
| GAAATGGAAAGAGACGTTAG+TGG | 0.596462 | 2_1:+67216179 | None:intergenic |
| TAGGGCACTTGGATCAATGG+TGG | 0.605281 | 2_1:-67214921 | Msa0219560:CDS |
| GGTAACATACAGGAATGGGC+TGG | 0.609763 | 2_1:+67216208 | None:intergenic |
| TTTATAATTATAAATAACAA+CGG | 0.610089 | 2_1:-67214230 | Msa0219560:three_prime_UTR |
| TAATTGGTGTTAGCTTAGAG+TGG | 0.610320 | 2_1:+67214436 | None:intergenic |
| AGGGCACTTGGATCAATGGT+GGG | 0.613700 | 2_1:-67214920 | Msa0219560:CDS |
| TGTGTGTGAAGAAGCTGATA+GGG | 0.615409 | 2_1:-67214939 | Msa0219560:CDS |
| GATGAAATATAATCAATGGT+GGG | 0.618538 | 2_1:+67215876 | None:intergenic |
| AAGAGACGTTAGTGGTGTAA+CGG | 0.624816 | 2_1:+67216187 | None:intergenic |
| TCAAATGCCTCAGAAATGGA+AGG | 0.629609 | 2_1:+67215382 | None:intergenic |
| TGAGCTTCAGGATCTGACAT+GGG | 0.635005 | 2_1:+67215840 | None:intergenic |
| GCAGGGAATTGAGGAAATGG+AGG | 0.641748 | 2_1:-67214619 | Msa0219560:intron |
| TCTTTCTCAAACAACAACAA+TGG | 0.642542 | 2_1:-67216048 | Msa0219560:exon |
| TAAATTCTTAATGAGACCGG+CGG | 0.645456 | 2_1:+67214156 | None:intergenic |
| GGAAGGTTAGAGAAAGCCGC+CGG | 0.653729 | 2_1:-67214172 | Msa0219560:three_prime_UTR |
| TCATCATTGGAAGAAGTACG+AGG | 0.693109 | 2_1:+67215918 | None:intergenic |
| AGTGAATGATAGACTCCCAG+AGG | 0.721160 | 2_1:-67214556 | Msa0219560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAAATATTAATTCTAT+TGG | - | chr2_1:67215332-67215351 | Msa0219560:intron | 10.0% |
| !!! | ATTAAATCAATTTGTTTTAT+TGG | - | chr2_1:67215693-67215712 | Msa0219560:CDS | 10.0% |
| !!! | TTTTAAAGAAAATTTAGATT+AGG | - | chr2_1:67216180-67216199 | Msa0219560:five_prime_UTR | 10.0% |
| !! | TTTCAAAATATTAATTCTAT+TGG | - | chr2_1:67215332-67215351 | Msa0219560:intron | 10.0% |
| !!! | ATTAAATCAATTTGTTTTAT+TGG | - | chr2_1:67215693-67215712 | Msa0219560:CDS | 10.0% |
| !!! | TTTTAAAGAAAATTTAGATT+AGG | - | chr2_1:67216180-67216199 | Msa0219560:five_prime_UTR | 10.0% |
| !!! | AAGTTTTGAAATTTTTGTTA+TGG | - | chr2_1:67214803-67214822 | Msa0219560:intron | 15.0% |
| !!! | AAGTTTTGAAATTTTTGTTA+TGG | - | chr2_1:67214803-67214822 | Msa0219560:intron | 15.0% |
| !! | TGAATAAGATGTTATAGAAA+TGG | + | chr2_1:67214219-67214238 | None:intergenic | 20.0% |
| !!! | GAATTTTTTTACTTGTGATT+TGG | - | chr2_1:67214609-67214628 | Msa0219560:CDS | 20.0% |
| !! | AAAATCAATCCTTACAAAAT+GGG | + | chr2_1:67214765-67214784 | None:intergenic | 20.0% |
| !! | AAAAATCAATCCTTACAAAA+TGG | + | chr2_1:67214766-67214785 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTATGGATTGAAT+TGG | - | chr2_1:67214813-67214832 | Msa0219560:CDS | 20.0% |
| !!! | TTTTTGTTATGGATTGAATT+GGG | - | chr2_1:67214814-67214833 | Msa0219560:CDS | 20.0% |
| !! | AATTCATATACACCATTAAT+TGG | + | chr2_1:67215676-67215695 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTATTGGTGTTTT+TGG | - | chr2_1:67215702-67215721 | Msa0219560:CDS | 20.0% |
| !!! | TTTGTTTTATTGGTGTTTTT+GGG | - | chr2_1:67215703-67215722 | Msa0219560:CDS | 20.0% |
| !!! | GTTTCTAAAGAGTATTATTA+TGG | - | chr2_1:67215735-67215754 | Msa0219560:intron | 20.0% |
| !!! | AAAATTGAAAGAGCATTAAT+TGG | + | chr2_1:67215962-67215981 | None:intergenic | 20.0% |
| !!! | AGATAGTTAAACTTTAGAAT+TGG | - | chr2_1:67215984-67216003 | Msa0219560:CDS | 20.0% |
| !! | TAAAGAAAATTTAGATTAGG+AGG | - | chr2_1:67216183-67216202 | Msa0219560:five_prime_UTR | 20.0% |
| !! | AATTTACAATGAAATTTACG+TGG | - | chr2_1:67216240-67216259 | Msa0219560:five_prime_UTR | 20.0% |
| !! | TGAATAAGATGTTATAGAAA+TGG | + | chr2_1:67214219-67214238 | None:intergenic | 20.0% |
| !!! | GAATTTTTTTACTTGTGATT+TGG | - | chr2_1:67214609-67214628 | Msa0219560:CDS | 20.0% |
| !! | AAAATCAATCCTTACAAAAT+GGG | + | chr2_1:67214765-67214784 | None:intergenic | 20.0% |
| !! | AAAAATCAATCCTTACAAAA+TGG | + | chr2_1:67214766-67214785 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTATGGATTGAAT+TGG | - | chr2_1:67214813-67214832 | Msa0219560:CDS | 20.0% |
| !!! | TTTTTGTTATGGATTGAATT+GGG | - | chr2_1:67214814-67214833 | Msa0219560:CDS | 20.0% |
| !! | AATTCATATACACCATTAAT+TGG | + | chr2_1:67215676-67215695 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTATTGGTGTTTT+TGG | - | chr2_1:67215702-67215721 | Msa0219560:CDS | 20.0% |
| !!! | TTTGTTTTATTGGTGTTTTT+GGG | - | chr2_1:67215703-67215722 | Msa0219560:CDS | 20.0% |
| !!! | GTTTCTAAAGAGTATTATTA+TGG | - | chr2_1:67215735-67215754 | Msa0219560:intron | 20.0% |
| !!! | AAAATTGAAAGAGCATTAAT+TGG | + | chr2_1:67215962-67215981 | None:intergenic | 20.0% |
| !!! | AGATAGTTAAACTTTAGAAT+TGG | - | chr2_1:67215984-67216003 | Msa0219560:CDS | 20.0% |
| !! | TAAAGAAAATTTAGATTAGG+AGG | - | chr2_1:67216183-67216202 | Msa0219560:five_prime_UTR | 20.0% |
| !!! | GAATTTGATTTTGATTTGTG+AGG | + | chr2_1:67214272-67214291 | None:intergenic | 25.0% |
| ! | ATCGATCAATGTAATAGAAA+TGG | + | chr2_1:67214305-67214324 | None:intergenic | 25.0% |
| ! | GATGAAATATAATCAATGGT+GGG | + | chr2_1:67214506-67214525 | None:intergenic | 25.0% |
| ! | AGATGAAATATAATCAATGG+TGG | + | chr2_1:67214507-67214526 | None:intergenic | 25.0% |
| ! | GTCAGATGAAATATAATCAA+TGG | + | chr2_1:67214510-67214529 | None:intergenic | 25.0% |
| ! | AAGATTTGGATTCAAAAAAC+TGG | - | chr2_1:67214673-67214692 | Msa0219560:intron | 25.0% |
| ! | AGATTTGGATTCAAAAAACT+GGG | - | chr2_1:67214674-67214693 | Msa0219560:intron | 25.0% |
| ! | ATGTGAAGTTTGTATGATTA+GGG | - | chr2_1:67214858-67214877 | Msa0219560:CDS | 25.0% |
| ! | TTTATGCAAAACCTCTATTA+TGG | - | chr2_1:67214930-67214949 | Msa0219560:CDS | 25.0% |
| !! | TCTGATATTTTCAATGCTTT+TGG | - | chr2_1:67214958-67214977 | Msa0219560:CDS | 25.0% |
| ! | ACTCCATTTGAATTATGATA+TGG | - | chr2_1:67215606-67215625 | Msa0219560:intron | 25.0% |
| ! | GTACCATATCATAATTCAAA+TGG | + | chr2_1:67215612-67215631 | None:intergenic | 25.0% |
| ! | TTGAATTATGATATGGTACA+TGG | - | chr2_1:67215613-67215632 | Msa0219560:intron | 25.0% |
| ! | AACATATCACAACCAATTAA+TGG | - | chr2_1:67215661-67215680 | Msa0219560:CDS | 25.0% |
| !!! | TAGAAGTTTAGCTTTATTTG+TGG | - | chr2_1:67216039-67216058 | Msa0219560:exon | 25.0% |
| !!! | GAAATCTAATAATTTGCTGA+TGG | + | chr2_1:67216091-67216110 | None:intergenic | 25.0% |
| ! | TTGTAAATTCTTAATGAGAC+CGG | + | chr2_1:67216229-67216248 | None:intergenic | 25.0% |
| !!! | GAATTTGATTTTGATTTGTG+AGG | + | chr2_1:67214272-67214291 | None:intergenic | 25.0% |
| ! | ATCGATCAATGTAATAGAAA+TGG | + | chr2_1:67214305-67214324 | None:intergenic | 25.0% |
| ! | GATGAAATATAATCAATGGT+GGG | + | chr2_1:67214506-67214525 | None:intergenic | 25.0% |
| ! | AGATGAAATATAATCAATGG+TGG | + | chr2_1:67214507-67214526 | None:intergenic | 25.0% |
| ! | GTCAGATGAAATATAATCAA+TGG | + | chr2_1:67214510-67214529 | None:intergenic | 25.0% |
| ! | AAGATTTGGATTCAAAAAAC+TGG | - | chr2_1:67214673-67214692 | Msa0219560:intron | 25.0% |
| ! | AGATTTGGATTCAAAAAACT+GGG | - | chr2_1:67214674-67214693 | Msa0219560:intron | 25.0% |
| ! | ATGTGAAGTTTGTATGATTA+GGG | - | chr2_1:67214858-67214877 | Msa0219560:CDS | 25.0% |
| ! | TTTATGCAAAACCTCTATTA+TGG | - | chr2_1:67214930-67214949 | Msa0219560:CDS | 25.0% |
| !! | TCTGATATTTTCAATGCTTT+TGG | - | chr2_1:67214958-67214977 | Msa0219560:CDS | 25.0% |
| ! | ACTCCATTTGAATTATGATA+TGG | - | chr2_1:67215606-67215625 | Msa0219560:intron | 25.0% |
| ! | GTACCATATCATAATTCAAA+TGG | + | chr2_1:67215612-67215631 | None:intergenic | 25.0% |
| ! | TTGAATTATGATATGGTACA+TGG | - | chr2_1:67215613-67215632 | Msa0219560:intron | 25.0% |
| ! | AACATATCACAACCAATTAA+TGG | - | chr2_1:67215661-67215680 | Msa0219560:CDS | 25.0% |
| !!! | TAGAAGTTTAGCTTTATTTG+TGG | - | chr2_1:67216039-67216058 | Msa0219560:exon | 25.0% |
| !!! | GAAATCTAATAATTTGCTGA+TGG | + | chr2_1:67216091-67216110 | None:intergenic | 25.0% |
| ! | TTGTAAATTCTTAATGAGAC+CGG | + | chr2_1:67216229-67216248 | None:intergenic | 25.0% |
| TCTTTCTCAAACAACAACAA+TGG | - | chr2_1:67214331-67214350 | Msa0219560:three_prime_UTR | 30.0% | |
| !!! | TTGTTTTTTGGGTCTTTCTT+GGG | + | chr2_1:67214393-67214412 | None:intergenic | 30.0% |
| !!! | GCGATTTTAGGTTGTTTTTT+GGG | + | chr2_1:67214404-67214423 | None:intergenic | 30.0% |
| !!! | AGCGATTTTAGGTTGTTTTT+TGG | + | chr2_1:67214405-67214424 | None:intergenic | 30.0% |
| !! | TGGGATTTGATTTTCATCAT+TGG | + | chr2_1:67214477-67214496 | None:intergenic | 30.0% |
| TGATGAAAATCAAATCCCAT+TGG | - | chr2_1:67214478-67214497 | Msa0219560:CDS | 30.0% | |
| ! | CTTCTATTACCCATTTTGTA+AGG | - | chr2_1:67214753-67214772 | Msa0219560:intron | 30.0% |
| GATGTGAAGTTTGTATGATT+AGG | - | chr2_1:67214857-67214876 | Msa0219560:CDS | 30.0% | |
| GATTAGGGATAAAATTGTGT+TGG | - | chr2_1:67214873-67214892 | Msa0219560:CDS | 30.0% | |
| AAATTGAATCGAATTAGACC+TGG | - | chr2_1:67215205-67215224 | Msa0219560:intron | 30.0% | |
| ! | AATGTTGAATTGTGTTGTTC+TGG | - | chr2_1:67215362-67215381 | Msa0219560:intron | 30.0% |
| AATTGGTTGTGATATGTTGA+CGG | + | chr2_1:67215659-67215678 | None:intergenic | 30.0% | |
| AGAAAATTTAGATTAGGAGG+TGG | - | chr2_1:67216186-67216205 | Msa0219560:five_prime_UTR | 30.0% | |
| TCTTTCTCAAACAACAACAA+TGG | - | chr2_1:67214331-67214350 | Msa0219560:three_prime_UTR | 30.0% | |
| !!! | TTGTTTTTTGGGTCTTTCTT+GGG | + | chr2_1:67214393-67214412 | None:intergenic | 30.0% |
| !!! | GCGATTTTAGGTTGTTTTTT+GGG | + | chr2_1:67214404-67214423 | None:intergenic | 30.0% |
| !!! | AGCGATTTTAGGTTGTTTTT+TGG | + | chr2_1:67214405-67214424 | None:intergenic | 30.0% |
| !! | TGGGATTTGATTTTCATCAT+TGG | + | chr2_1:67214477-67214496 | None:intergenic | 30.0% |
| TGATGAAAATCAAATCCCAT+TGG | - | chr2_1:67214478-67214497 | Msa0219560:CDS | 30.0% | |
| ! | CTTCTATTACCCATTTTGTA+AGG | - | chr2_1:67214753-67214772 | Msa0219560:intron | 30.0% |
| GATGTGAAGTTTGTATGATT+AGG | - | chr2_1:67214857-67214876 | Msa0219560:CDS | 30.0% | |
| GATTAGGGATAAAATTGTGT+TGG | - | chr2_1:67214873-67214892 | Msa0219560:CDS | 30.0% | |
| AAATTGAATCGAATTAGACC+TGG | - | chr2_1:67215205-67215224 | Msa0219560:intron | 30.0% | |
| ! | AATGTTGAATTGTGTTGTTC+TGG | - | chr2_1:67215362-67215381 | Msa0219560:intron | 30.0% |
| AATTGGTTGTGATATGTTGA+CGG | + | chr2_1:67215659-67215678 | None:intergenic | 30.0% | |
| AGAAAATTTAGATTAGGAGG+TGG | - | chr2_1:67216186-67216205 | Msa0219560:five_prime_UTR | 30.0% | |
| TAACGGTAACATACAGGAAT+GGG | + | chr2_1:67214178-67214197 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTTTGGGTCTTTCT+TGG | + | chr2_1:67214394-67214413 | None:intergenic | 35.0% |
| GCAGAGTTTGATTGAAGATT+TGG | - | chr2_1:67214659-67214678 | Msa0219560:intron | 35.0% | |
| ! | GTTATGGATTGAATTGGGTT+TGG | - | chr2_1:67214819-67214838 | Msa0219560:CDS | 35.0% |
| TAGGGATAAAATTGTGTTGG+TGG | - | chr2_1:67214876-67214895 | Msa0219560:CDS | 35.0% | |
| !! | TTTTGCATAAAGCACTACGA+GGG | + | chr2_1:67214921-67214940 | None:intergenic | 35.0% |
| CATTATTTCGATGTCTGGTT+AGG | - | chr2_1:67215308-67215327 | Msa0219560:intron | 35.0% | |
| TTCCATTGCTTCAGAAACTA+AGG | - | chr2_1:67215496-67215515 | Msa0219560:CDS | 35.0% | |
| !! | AACCTTAGTTTCTGAAGCAA+TGG | + | chr2_1:67215501-67215520 | None:intergenic | 35.0% |
| TCACAAAAACCTTAGGATCA+GGG | - | chr2_1:67215530-67215549 | Msa0219560:intron | 35.0% | |
| ATCCAAATGTGTCTCCAAAA+TGG | - | chr2_1:67215572-67215591 | Msa0219560:intron | 35.0% | |
| !! | TACCATTTTGGAGACACATT+TGG | + | chr2_1:67215577-67215596 | None:intergenic | 35.0% |
| GTCTCCAAAATGGTAAAGTT+TGG | - | chr2_1:67215582-67215601 | Msa0219560:intron | 35.0% | |
| ! | AGTGCCAAACTTTACCATTT+TGG | + | chr2_1:67215589-67215608 | None:intergenic | 35.0% |
| TATGATATGGTACATGGTCT+AGG | - | chr2_1:67215619-67215638 | Msa0219560:intron | 35.0% | |
| !! | AAGAGTATTATTATGGCAGC+AGG | - | chr2_1:67215742-67215761 | Msa0219560:intron | 35.0% |
| ! | AGAGTATTATTATGGCAGCA+GGG | - | chr2_1:67215743-67215762 | Msa0219560:intron | 35.0% |
| TATTGCAACTTCAGTGTATG+AGG | - | chr2_1:67215865-67215884 | Msa0219560:CDS | 35.0% | |
| AGTGTATGAGGCAATCATTA+AGG | - | chr2_1:67215877-67215896 | Msa0219560:CDS | 35.0% | |
| AATCATTAAGGATGTGGAAG+AGG | - | chr2_1:67215889-67215908 | Msa0219560:CDS | 35.0% | |
| !! | TAATTGGTGTTAGCTTAGAG+TGG | + | chr2_1:67215946-67215965 | None:intergenic | 35.0% |
| AATTTAGATTAGGAGGTGGA+AGG | - | chr2_1:67216190-67216209 | Msa0219560:five_prime_UTR | 35.0% | |
| TAAATTCTTAATGAGACCGG+CGG | + | chr2_1:67216226-67216245 | None:intergenic | 35.0% | |
| TAACGGTAACATACAGGAAT+GGG | + | chr2_1:67214178-67214197 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTTTGGGTCTTTCT+TGG | + | chr2_1:67214394-67214413 | None:intergenic | 35.0% |
| GCAGAGTTTGATTGAAGATT+TGG | - | chr2_1:67214659-67214678 | Msa0219560:intron | 35.0% | |
| ! | GTTATGGATTGAATTGGGTT+TGG | - | chr2_1:67214819-67214838 | Msa0219560:CDS | 35.0% |
| TAGGGATAAAATTGTGTTGG+TGG | - | chr2_1:67214876-67214895 | Msa0219560:CDS | 35.0% | |
| !! | TTTTGCATAAAGCACTACGA+GGG | + | chr2_1:67214921-67214940 | None:intergenic | 35.0% |
| CATTATTTCGATGTCTGGTT+AGG | - | chr2_1:67215308-67215327 | Msa0219560:intron | 35.0% | |
| TTCCATTGCTTCAGAAACTA+AGG | - | chr2_1:67215496-67215515 | Msa0219560:CDS | 35.0% | |
| !! | AACCTTAGTTTCTGAAGCAA+TGG | + | chr2_1:67215501-67215520 | None:intergenic | 35.0% |
| TCACAAAAACCTTAGGATCA+GGG | - | chr2_1:67215530-67215549 | Msa0219560:intron | 35.0% | |
| ATCCAAATGTGTCTCCAAAA+TGG | - | chr2_1:67215572-67215591 | Msa0219560:intron | 35.0% | |
| !! | TACCATTTTGGAGACACATT+TGG | + | chr2_1:67215577-67215596 | None:intergenic | 35.0% |
| GTCTCCAAAATGGTAAAGTT+TGG | - | chr2_1:67215582-67215601 | Msa0219560:intron | 35.0% | |
| ! | AGTGCCAAACTTTACCATTT+TGG | + | chr2_1:67215589-67215608 | None:intergenic | 35.0% |
| TATGATATGGTACATGGTCT+AGG | - | chr2_1:67215619-67215638 | Msa0219560:intron | 35.0% | |
| !! | AAGAGTATTATTATGGCAGC+AGG | - | chr2_1:67215742-67215761 | Msa0219560:intron | 35.0% |
| ! | AGAGTATTATTATGGCAGCA+GGG | - | chr2_1:67215743-67215762 | Msa0219560:intron | 35.0% |
| TATTGCAACTTCAGTGTATG+AGG | - | chr2_1:67215865-67215884 | Msa0219560:CDS | 35.0% | |
| AGTGTATGAGGCAATCATTA+AGG | - | chr2_1:67215877-67215896 | Msa0219560:CDS | 35.0% | |
| AATCATTAAGGATGTGGAAG+AGG | - | chr2_1:67215889-67215908 | Msa0219560:CDS | 35.0% | |
| !! | TAATTGGTGTTAGCTTAGAG+TGG | + | chr2_1:67215946-67215965 | None:intergenic | 35.0% |
| AATTTAGATTAGGAGGTGGA+AGG | - | chr2_1:67216190-67216209 | Msa0219560:five_prime_UTR | 35.0% | |
| TAAATTCTTAATGAGACCGG+CGG | + | chr2_1:67216226-67216245 | None:intergenic | 35.0% | |
| GTAACGGTAACATACAGGAA+TGG | + | chr2_1:67214179-67214198 | None:intergenic | 40.0% | |
| AAGAGACGTTAGTGGTGTAA+CGG | + | chr2_1:67214195-67214214 | None:intergenic | 40.0% | |
| GAAATGGAAAGAGACGTTAG+TGG | + | chr2_1:67214203-67214222 | None:intergenic | 40.0% | |
| !! | GTTGGAAGAGCATTGTCAAT+AGG | + | chr2_1:67214365-67214384 | None:intergenic | 40.0% |
| TTTGGGTCTTTCTTGGGTTA+TGG | + | chr2_1:67214387-67214406 | None:intergenic | 40.0% | |
| ! | TCATCATTGGAAGAAGTACG+AGG | + | chr2_1:67214464-67214483 | None:intergenic | 40.0% |
| !! | AATCAATGGTGGGTTCCAAT+GGG | + | chr2_1:67214496-67214515 | None:intergenic | 40.0% |
| !! | TAATCAATGGTGGGTTCCAA+TGG | + | chr2_1:67214497-67214516 | None:intergenic | 40.0% |
| CTTACTTGAATCTGAGCTTC+AGG | + | chr2_1:67214554-67214573 | None:intergenic | 40.0% | |
| GGATTCAAAAAACTGGGTCA+AGG | - | chr2_1:67214680-67214699 | Msa0219560:intron | 40.0% | |
| AAATCGCCTAACATCGTTCA+AGG | + | chr2_1:67214715-67214734 | None:intergenic | 40.0% | |
| ! | GGATAAAATTGTGTTGGTGG+TGG | - | chr2_1:67214879-67214898 | Msa0219560:CDS | 40.0% |
| !! | GTTTTGCATAAAGCACTACG+AGG | + | chr2_1:67214922-67214941 | None:intergenic | 40.0% |
| ATCAGAAGCAGCCATAATAG+AGG | + | chr2_1:67214944-67214963 | None:intergenic | 40.0% | |
| GTTTGATCCTTCCATTTCTG+AGG | - | chr2_1:67214990-67215009 | Msa0219560:intron | 40.0% | |
| TCAAATGCCTCAGAAATGGA+AGG | + | chr2_1:67215000-67215019 | None:intergenic | 40.0% | |
| !! | TCCATTTCTGAGGCATTTGA+TGG | - | chr2_1:67215000-67215019 | Msa0219560:intron | 40.0% |
| AAATTGAACCGAACTAGACC+TGG | - | chr2_1:67215074-67215093 | Msa0219560:intron | 40.0% | |
| ! | GTCCTGATTTGAGCTGTTTA+AGG | - | chr2_1:67215132-67215151 | Msa0219560:intron | 40.0% |
| ! | CTGATTTGAGCTGTTTAAGG+CGG | - | chr2_1:67215135-67215154 | Msa0219560:intron | 40.0% |
| ! | TGATTTGAGCTGTTTAAGGC+GGG | - | chr2_1:67215136-67215155 | Msa0219560:intron | 40.0% |
| GACCTGGTTGAACCTTTAAT+CGG | - | chr2_1:67215221-67215240 | Msa0219560:intron | 40.0% | |
| TGATTGAGCTGTCCGATTAA+AGG | + | chr2_1:67215236-67215255 | None:intergenic | 40.0% | |
| GGTCTCATTATTTCGATGTC+TGG | - | chr2_1:67215303-67215322 | Msa0219560:intron | 40.0% | |
| TTGTGTGTGAAGAAGCTGAT+AGG | - | chr2_1:67215439-67215458 | Msa0219560:CDS | 40.0% | |
| TGTGTGTGAAGAAGCTGATA+GGG | - | chr2_1:67215440-67215459 | Msa0219560:CDS | 40.0% | |
| !! | AGTTTCTGAAGCAATGGAAG+AGG | + | chr2_1:67215495-67215514 | None:intergenic | 40.0% |
| CTGTGAGTCACAAAAACCTT+AGG | - | chr2_1:67215523-67215542 | Msa0219560:intron | 40.0% | |
| GTCACAAAAACCTTAGGATC+AGG | - | chr2_1:67215529-67215548 | Msa0219560:intron | 40.0% | |
| ATTGAGGAAATGGAGGAGTT+TGG | - | chr2_1:67215767-67215786 | Msa0219560:intron | 40.0% | |
| TTGAGGAAATGGAGGAGTTT+GGG | - | chr2_1:67215768-67215787 | Msa0219560:intron | 40.0% | |
| TGAGGCAATCATTAAGGATG+TGG | - | chr2_1:67215883-67215902 | Msa0219560:CDS | 40.0% | |
| TGTACGTTTGCTCATACTTG+AGG | - | chr2_1:67216010-67216029 | Msa0219560:CDS | 40.0% | |
| TTTATTTGTGGCAGTGCTCA+TGG | - | chr2_1:67216051-67216070 | Msa0219560:exon | 40.0% | |
| GTAACGGTAACATACAGGAA+TGG | + | chr2_1:67214179-67214198 | None:intergenic | 40.0% | |
| AAGAGACGTTAGTGGTGTAA+CGG | + | chr2_1:67214195-67214214 | None:intergenic | 40.0% | |
| GAAATGGAAAGAGACGTTAG+TGG | + | chr2_1:67214203-67214222 | None:intergenic | 40.0% | |
| !! | GTTGGAAGAGCATTGTCAAT+AGG | + | chr2_1:67214365-67214384 | None:intergenic | 40.0% |
| TTTGGGTCTTTCTTGGGTTA+TGG | + | chr2_1:67214387-67214406 | None:intergenic | 40.0% | |
| ! | TCATCATTGGAAGAAGTACG+AGG | + | chr2_1:67214464-67214483 | None:intergenic | 40.0% |
| !! | AATCAATGGTGGGTTCCAAT+GGG | + | chr2_1:67214496-67214515 | None:intergenic | 40.0% |
| !! | TAATCAATGGTGGGTTCCAA+TGG | + | chr2_1:67214497-67214516 | None:intergenic | 40.0% |
| CTTACTTGAATCTGAGCTTC+AGG | + | chr2_1:67214554-67214573 | None:intergenic | 40.0% | |
| GGATTCAAAAAACTGGGTCA+AGG | - | chr2_1:67214680-67214699 | Msa0219560:intron | 40.0% | |
| AAATCGCCTAACATCGTTCA+AGG | + | chr2_1:67214715-67214734 | None:intergenic | 40.0% | |
| ! | GGATAAAATTGTGTTGGTGG+TGG | - | chr2_1:67214879-67214898 | Msa0219560:CDS | 40.0% |
| !! | GTTTTGCATAAAGCACTACG+AGG | + | chr2_1:67214922-67214941 | None:intergenic | 40.0% |
| ATCAGAAGCAGCCATAATAG+AGG | + | chr2_1:67214944-67214963 | None:intergenic | 40.0% | |
| GTTTGATCCTTCCATTTCTG+AGG | - | chr2_1:67214990-67215009 | Msa0219560:intron | 40.0% | |
| TCAAATGCCTCAGAAATGGA+AGG | + | chr2_1:67215000-67215019 | None:intergenic | 40.0% | |
| !! | TCCATTTCTGAGGCATTTGA+TGG | - | chr2_1:67215000-67215019 | Msa0219560:intron | 40.0% |
| AAATTGAACCGAACTAGACC+TGG | - | chr2_1:67215074-67215093 | Msa0219560:intron | 40.0% | |
| ! | GTCCTGATTTGAGCTGTTTA+AGG | - | chr2_1:67215132-67215151 | Msa0219560:intron | 40.0% |
| ! | CTGATTTGAGCTGTTTAAGG+CGG | - | chr2_1:67215135-67215154 | Msa0219560:intron | 40.0% |
| ! | TGATTTGAGCTGTTTAAGGC+GGG | - | chr2_1:67215136-67215155 | Msa0219560:intron | 40.0% |
| GACCTGGTTGAACCTTTAAT+CGG | - | chr2_1:67215221-67215240 | Msa0219560:intron | 40.0% | |
| TGATTGAGCTGTCCGATTAA+AGG | + | chr2_1:67215236-67215255 | None:intergenic | 40.0% | |
| GGTCTCATTATTTCGATGTC+TGG | - | chr2_1:67215303-67215322 | Msa0219560:intron | 40.0% | |
| TTGTGTGTGAAGAAGCTGAT+AGG | - | chr2_1:67215439-67215458 | Msa0219560:CDS | 40.0% | |
| TGTGTGTGAAGAAGCTGATA+GGG | - | chr2_1:67215440-67215459 | Msa0219560:CDS | 40.0% | |
| !! | AGTTTCTGAAGCAATGGAAG+AGG | + | chr2_1:67215495-67215514 | None:intergenic | 40.0% |
| CTGTGAGTCACAAAAACCTT+AGG | - | chr2_1:67215523-67215542 | Msa0219560:intron | 40.0% | |
| GTCACAAAAACCTTAGGATC+AGG | - | chr2_1:67215529-67215548 | Msa0219560:intron | 40.0% | |
| ATTGAGGAAATGGAGGAGTT+TGG | - | chr2_1:67215767-67215786 | Msa0219560:intron | 40.0% | |
| TTGAGGAAATGGAGGAGTTT+GGG | - | chr2_1:67215768-67215787 | Msa0219560:intron | 40.0% | |
| TGAGGCAATCATTAAGGATG+TGG | - | chr2_1:67215883-67215902 | Msa0219560:CDS | 40.0% | |
| TGTACGTTTGCTCATACTTG+AGG | - | chr2_1:67216010-67216029 | Msa0219560:CDS | 40.0% | |
| TTTATTTGTGGCAGTGCTCA+TGG | - | chr2_1:67216051-67216070 | Msa0219560:exon | 40.0% | |
| GTGGTGTAACGGTAACATAC+AGG | + | chr2_1:67214184-67214203 | None:intergenic | 45.0% | |
| GGTCTTTCTTGGGTTATGGT+TGG | + | chr2_1:67214383-67214402 | None:intergenic | 45.0% | |
| TGAGCTTCAGGATCTGACAT+GGG | + | chr2_1:67214542-67214561 | None:intergenic | 45.0% | |
| GTGAGTCCTTGAACGATGTT+AGG | - | chr2_1:67214706-67214725 | Msa0219560:intron | 45.0% | |
| !! | AATTGTGTTGGTGGTGGTGA+AGG | - | chr2_1:67214885-67214904 | Msa0219560:CDS | 45.0% |
| GCCATCAAATGCCTCAGAAA+TGG | + | chr2_1:67215004-67215023 | None:intergenic | 45.0% | |
| !! | TTCTGAGGCATTTGATGGCT+TGG | - | chr2_1:67215005-67215024 | Msa0219560:intron | 45.0% |
| AGGTTCAACCAGGTCTAGTT+CGG | + | chr2_1:67215085-67215104 | None:intergenic | 45.0% | |
| GACCTGGTTGAACCTTAAAC+CGG | - | chr2_1:67215090-67215109 | Msa0219560:intron | 45.0% | |
| AAAATCGTGATCGAGCTGTC+CGG | + | chr2_1:67215112-67215131 | None:intergenic | 45.0% | |
| CGCCTTAAACAGCTCAAATC+AGG | + | chr2_1:67215137-67215156 | None:intergenic | 45.0% | |
| GTCCGATTAAAGGTTCAACC+AGG | + | chr2_1:67215226-67215245 | None:intergenic | 45.0% | |
| ! | GTCCTGATTCGAGCTGTTTA+AGG | - | chr2_1:67215263-67215282 | Msa0219560:intron | 45.0% |
| ! | CTGATTCGAGCTGTTTAAGG+CGG | - | chr2_1:67215266-67215285 | Msa0219560:intron | 45.0% |
| ! | TGATTCGAGCTGTTTAAGGC+GGG | - | chr2_1:67215267-67215286 | Msa0219560:intron | 45.0% |
| ! | TGATAGGGCACTTGGATCAA+TGG | - | chr2_1:67215455-67215474 | Msa0219560:CDS | 45.0% |
| !! | AAGCAATGGAAGAGGTGTCA+TGG | + | chr2_1:67215487-67215506 | None:intergenic | 45.0% |
| ATTATGGCAGCAGGGAATTG+AGG | - | chr2_1:67215751-67215770 | Msa0219560:intron | 45.0% | |
| AGTGAATGATAGACTCCCAG+AGG | - | chr2_1:67215823-67215842 | Msa0219560:intron | 45.0% | |
| TGTGGAAGAGGAACAGAAGA+TGG | - | chr2_1:67215901-67215920 | Msa0219560:CDS | 45.0% | |
| AGGAACAGAAGATGGAAGTG+TGG | - | chr2_1:67215909-67215928 | Msa0219560:CDS | 45.0% | |
| GTGGTGTAACGGTAACATAC+AGG | + | chr2_1:67214184-67214203 | None:intergenic | 45.0% | |
| GGTCTTTCTTGGGTTATGGT+TGG | + | chr2_1:67214383-67214402 | None:intergenic | 45.0% | |
| TGAGCTTCAGGATCTGACAT+GGG | + | chr2_1:67214542-67214561 | None:intergenic | 45.0% | |
| GTGAGTCCTTGAACGATGTT+AGG | - | chr2_1:67214706-67214725 | Msa0219560:intron | 45.0% | |
| !! | AATTGTGTTGGTGGTGGTGA+AGG | - | chr2_1:67214885-67214904 | Msa0219560:CDS | 45.0% |
| GCCATCAAATGCCTCAGAAA+TGG | + | chr2_1:67215004-67215023 | None:intergenic | 45.0% | |
| !! | TTCTGAGGCATTTGATGGCT+TGG | - | chr2_1:67215005-67215024 | Msa0219560:intron | 45.0% |
| AGGTTCAACCAGGTCTAGTT+CGG | + | chr2_1:67215085-67215104 | None:intergenic | 45.0% | |
| GACCTGGTTGAACCTTAAAC+CGG | - | chr2_1:67215090-67215109 | Msa0219560:intron | 45.0% | |
| AAAATCGTGATCGAGCTGTC+CGG | + | chr2_1:67215112-67215131 | None:intergenic | 45.0% | |
| CGCCTTAAACAGCTCAAATC+AGG | + | chr2_1:67215137-67215156 | None:intergenic | 45.0% | |
| GTCCGATTAAAGGTTCAACC+AGG | + | chr2_1:67215226-67215245 | None:intergenic | 45.0% | |
| ! | GTCCTGATTCGAGCTGTTTA+AGG | - | chr2_1:67215263-67215282 | Msa0219560:intron | 45.0% |
| ! | CTGATTCGAGCTGTTTAAGG+CGG | - | chr2_1:67215266-67215285 | Msa0219560:intron | 45.0% |
| ! | TGATTCGAGCTGTTTAAGGC+GGG | - | chr2_1:67215267-67215286 | Msa0219560:intron | 45.0% |
| ! | TGATAGGGCACTTGGATCAA+TGG | - | chr2_1:67215455-67215474 | Msa0219560:CDS | 45.0% |
| !! | AAGCAATGGAAGAGGTGTCA+TGG | + | chr2_1:67215487-67215506 | None:intergenic | 45.0% |
| ATTATGGCAGCAGGGAATTG+AGG | - | chr2_1:67215751-67215770 | Msa0219560:intron | 45.0% | |
| AGTGAATGATAGACTCCCAG+AGG | - | chr2_1:67215823-67215842 | Msa0219560:intron | 45.0% | |
| TGTGGAAGAGGAACAGAAGA+TGG | - | chr2_1:67215901-67215920 | Msa0219560:CDS | 45.0% | |
| AGGAACAGAAGATGGAAGTG+TGG | - | chr2_1:67215909-67215928 | Msa0219560:CDS | 45.0% | |
| !! | TTTATAATTATAAATAACAA+CGG | - | chr2_1:67216149-67216168 | Msa0219560:five_prime_UTR | 5.0% |
| !! | TTTATAATTATAAATAACAA+CGG | - | chr2_1:67216149-67216168 | Msa0219560:five_prime_UTR | 5.0% |
| !! | ATACAGGAATGGGCTGGAAG+GGG | + | chr2_1:67214168-67214187 | None:intergenic | 50.0% |
| !! | CATACAGGAATGGGCTGGAA+GGG | + | chr2_1:67214169-67214188 | None:intergenic | 50.0% |
| !! | ACATACAGGAATGGGCTGGA+AGG | + | chr2_1:67214170-67214189 | None:intergenic | 50.0% |
| GGTAACATACAGGAATGGGC+TGG | + | chr2_1:67214174-67214193 | None:intergenic | 50.0% | |
| ! | GGGGTTGAGACAGCGATTTT+AGG | + | chr2_1:67214416-67214435 | None:intergenic | 50.0% |
| !! | CTGTTGCTGCTGTGGTTTTG+GGG | + | chr2_1:67214435-67214454 | None:intergenic | 50.0% |
| ! | GCTGTTGCTGCTGTGGTTTT+GGG | + | chr2_1:67214436-67214455 | None:intergenic | 50.0% |
| ! | TGCTGTTGCTGCTGTGGTTT+TGG | + | chr2_1:67214437-67214456 | None:intergenic | 50.0% |
| CAGGATCTGACATGGGTTTC+AGG | + | chr2_1:67214535-67214554 | None:intergenic | 50.0% | |
| CTGAGCTTCAGGATCTGACA+TGG | + | chr2_1:67214543-67214562 | None:intergenic | 50.0% | |
| ! | GTCCGGTTTAAGGTTCAACC+AGG | + | chr2_1:67215095-67215114 | None:intergenic | 50.0% |
| TGATCGAGCTGTCCGGTTTA+AGG | + | chr2_1:67215105-67215124 | None:intergenic | 50.0% | |
| AAGGCGGGTGAATGACTATG+AGG | - | chr2_1:67215151-67215170 | Msa0219560:intron | 50.0% | |
| CGCCTTAAACAGCTCGAATC+AGG | + | chr2_1:67215268-67215287 | None:intergenic | 50.0% | |
| ! | TTTAAGGCGGGTGAACGACT+AGG | - | chr2_1:67215279-67215298 | Msa0219560:intron | 50.0% |
| GCTGCTGCTGAAATCTTCTC+AGG | - | chr2_1:67215407-67215426 | Msa0219560:CDS | 50.0% | |
| ! | GAAGAAGCTGATAGGGCACT+TGG | - | chr2_1:67215447-67215466 | Msa0219560:CDS | 50.0% |
| ! | TAGGGCACTTGGATCAATGG+TGG | - | chr2_1:67215458-67215477 | Msa0219560:CDS | 50.0% |
| ! | AGGGCACTTGGATCAATGGT+GGG | - | chr2_1:67215459-67215478 | Msa0219560:CDS | 50.0% |
| ! | CAGCTTTAGCCCTGATCCTA+AGG | + | chr2_1:67215542-67215561 | None:intergenic | 50.0% |
| GCAGCAGGGAATTGAGGAAA+TGG | - | chr2_1:67215757-67215776 | Msa0219560:intron | 50.0% | |
| GCAGGGAATTGAGGAAATGG+AGG | - | chr2_1:67215760-67215779 | Msa0219560:intron | 50.0% | |
| GGAAATGGAGGAGTTTGGGA+TGG | - | chr2_1:67215772-67215791 | Msa0219560:intron | 50.0% | |
| TTGCTGCATCTCTTGCCTCT+GGG | + | chr2_1:67215841-67215860 | None:intergenic | 50.0% | |
| !! | ATACAGGAATGGGCTGGAAG+GGG | + | chr2_1:67214168-67214187 | None:intergenic | 50.0% |
| !! | CATACAGGAATGGGCTGGAA+GGG | + | chr2_1:67214169-67214188 | None:intergenic | 50.0% |
| !! | ACATACAGGAATGGGCTGGA+AGG | + | chr2_1:67214170-67214189 | None:intergenic | 50.0% |
| GGTAACATACAGGAATGGGC+TGG | + | chr2_1:67214174-67214193 | None:intergenic | 50.0% | |
| ! | GGGGTTGAGACAGCGATTTT+AGG | + | chr2_1:67214416-67214435 | None:intergenic | 50.0% |
| !! | CTGTTGCTGCTGTGGTTTTG+GGG | + | chr2_1:67214435-67214454 | None:intergenic | 50.0% |
| ! | GCTGTTGCTGCTGTGGTTTT+GGG | + | chr2_1:67214436-67214455 | None:intergenic | 50.0% |
| ! | TGCTGTTGCTGCTGTGGTTT+TGG | + | chr2_1:67214437-67214456 | None:intergenic | 50.0% |
| CAGGATCTGACATGGGTTTC+AGG | + | chr2_1:67214535-67214554 | None:intergenic | 50.0% | |
| CTGAGCTTCAGGATCTGACA+TGG | + | chr2_1:67214543-67214562 | None:intergenic | 50.0% | |
| ! | GTCCGGTTTAAGGTTCAACC+AGG | + | chr2_1:67215095-67215114 | None:intergenic | 50.0% |
| TGATCGAGCTGTCCGGTTTA+AGG | + | chr2_1:67215105-67215124 | None:intergenic | 50.0% | |
| AAGGCGGGTGAATGACTATG+AGG | - | chr2_1:67215151-67215170 | Msa0219560:intron | 50.0% | |
| CGCCTTAAACAGCTCGAATC+AGG | + | chr2_1:67215268-67215287 | None:intergenic | 50.0% | |
| ! | TTTAAGGCGGGTGAACGACT+AGG | - | chr2_1:67215279-67215298 | Msa0219560:intron | 50.0% |
| GCTGCTGCTGAAATCTTCTC+AGG | - | chr2_1:67215407-67215426 | Msa0219560:CDS | 50.0% | |
| ! | GAAGAAGCTGATAGGGCACT+TGG | - | chr2_1:67215447-67215466 | Msa0219560:CDS | 50.0% |
| ! | TAGGGCACTTGGATCAATGG+TGG | - | chr2_1:67215458-67215477 | Msa0219560:CDS | 50.0% |
| ! | AGGGCACTTGGATCAATGGT+GGG | - | chr2_1:67215459-67215478 | Msa0219560:CDS | 50.0% |
| ! | CAGCTTTAGCCCTGATCCTA+AGG | + | chr2_1:67215542-67215561 | None:intergenic | 50.0% |
| GCAGCAGGGAATTGAGGAAA+TGG | - | chr2_1:67215757-67215776 | Msa0219560:intron | 50.0% | |
| GCAGGGAATTGAGGAAATGG+AGG | - | chr2_1:67215760-67215779 | Msa0219560:intron | 50.0% | |
| GGAAATGGAGGAGTTTGGGA+TGG | - | chr2_1:67215772-67215791 | Msa0219560:intron | 50.0% | |
| TTGCTGCATCTCTTGCCTCT+GGG | + | chr2_1:67215841-67215860 | None:intergenic | 50.0% | |
| ! | GGTTGTTGCTGTTGCTGCTG+TGG | + | chr2_1:67214443-67214462 | None:intergenic | 55.0% |
| CTTGCTGCATCTCTTGCCTC+TGG | + | chr2_1:67215842-67215861 | None:intergenic | 55.0% | |
| GGAAGGTTAGAGAAAGCCGC+CGG | - | chr2_1:67216207-67216226 | Msa0219560:five_prime_UTR | 55.0% | |
| ! | GGTTGTTGCTGTTGCTGCTG+TGG | + | chr2_1:67214443-67214462 | None:intergenic | 55.0% |
| CTTGCTGCATCTCTTGCCTC+TGG | + | chr2_1:67215842-67215861 | None:intergenic | 55.0% | |
| GGAAGGTTAGAGAAAGCCGC+CGG | - | chr2_1:67216207-67216226 | Msa0219560:five_prime_UTR | 55.0% | |
| AAGGCGGGTGAACGACTAGG+AGG | - | chr2_1:67215282-67215301 | Msa0219560:intron | 60.0% | |
| AAGGCGGGTGAACGACTAGG+AGG | - | chr2_1:67215282-67215301 | Msa0219560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 67214140 | 67216261 | 67214140 | ID=Msa0219560;Name=Msa0219560 |
| chr2_1 | mRNA | 67214140 | 67216261 | 67214140 | ID=Msa0219560-mRNA-1;Parent=Msa0219560;Name=Msa0219560-mRNA-1;_AED=0.16;_eAED=0.16;_QI=210|1|1|1|1|1|5|261|301 |
| chr2_1 | exon | 67214140 | 67214637 | 67214140 | ID=Msa0219560-mRNA-1:exon:19028;Parent=Msa0219560-mRNA-1 |
| chr2_1 | exon | 67214808 | 67215002 | 67214808 | ID=Msa0219560-mRNA-1:exon:19027;Parent=Msa0219560-mRNA-1 |
| chr2_1 | exon | 67215375 | 67215522 | 67215375 | ID=Msa0219560-mRNA-1:exon:19026;Parent=Msa0219560-mRNA-1 |
| chr2_1 | exon | 67215632 | 67215738 | 67215632 | ID=Msa0219560-mRNA-1:exon:19025;Parent=Msa0219560-mRNA-1 |
| chr2_1 | exon | 67215833 | 67216261 | 67215833 | ID=Msa0219560-mRNA-1:exon:19024;Parent=Msa0219560-mRNA-1 |
| chr2_1 | five_prime_UTR | 67216052 | 67216261 | 67216052 | ID=Msa0219560-mRNA-1:five_prime_utr;Parent=Msa0219560-mRNA-1 |
| chr2_1 | CDS | 67215833 | 67216051 | 67215833 | ID=Msa0219560-mRNA-1:cds;Parent=Msa0219560-mRNA-1 |
| chr2_1 | CDS | 67215632 | 67215738 | 67215632 | ID=Msa0219560-mRNA-1:cds;Parent=Msa0219560-mRNA-1 |
| chr2_1 | CDS | 67215375 | 67215522 | 67215375 | ID=Msa0219560-mRNA-1:cds;Parent=Msa0219560-mRNA-1 |
| chr2_1 | CDS | 67214808 | 67215002 | 67214808 | ID=Msa0219560-mRNA-1:cds;Parent=Msa0219560-mRNA-1 |
| chr2_1 | CDS | 67214401 | 67214637 | 67214401 | ID=Msa0219560-mRNA-1:cds;Parent=Msa0219560-mRNA-1 |
| chr2_1 | three_prime_UTR | 67214140 | 67214400 | 67214140 | ID=Msa0219560-mRNA-1:three_prime_utr;Parent=Msa0219560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
