AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959010 MtrunA17_Chr6g0476731 97.103 725 18 1 1 725 1 722 0.0 1436
Msa0959010 MtrunA17_Chr3g0126871 75.973 437 97 4 294 725 148 581 0.0 583
Msa0959010 MtrunA17_Chr4g0076871 64.130 92 30 1 403 494 1 89 7.24e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959010 AT1G33360.1 60.625 640 207 8 69 703 39 638 0.0 732
Msa0959010 AT5G53350.1 72.340 470 122 3 242 708 96 560 0.0 664
Msa0959010 AT5G49840.3 67.458 421 124 5 309 725 197 608 0.0 559
Msa0959010 AT5G49840.3 43.902 82 30 1 91 172 77 142 7.38e-17 85.1
Msa0959010 AT5G49840.1 67.221 421 125 5 309 725 197 608 0.0 557
Msa0959010 AT5G49840.1 43.902 82 30 1 91 172 77 142 7.07e-17 85.1
Msa0959010 AT5G49840.2 70.408 392 112 3 309 696 197 588 0.0 556
Msa0959010 AT5G49840.2 43.902 82 30 1 91 172 77 142 9.52e-17 84.7
Msa0959010 AT5G49840.4 71.713 251 68 2 309 556 197 447 2.85e-115 355
Msa0959010 AT5G49840.4 43.902 82 30 1 91 172 77 142 1.37e-16 83.6

Find 228 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGGGACCCACATGGAATT+TGG 0.171857 6_3:-75353984 Msa0959010:CDS
GCATGGGGAGGGTCTAATTT+AGG 0.185975 6_3:-75353141 Msa0959010:CDS
AATATCAGCCGAGATGTTTC+TGG 0.210145 6_3:-75351343 Msa0959010:CDS
GGTCTTGATAAGTTTGTTAT+TGG 0.210515 6_3:-75353084 Msa0959010:CDS
CAAGGTACATTTGTTGAAAT+TGG 0.223334 6_3:-75353549 Msa0959010:CDS
CAAGATTCTTCTATTGGTTT+TGG 0.233687 6_3:-75350061 Msa0959010:CDS
TTCATTCTTCAATTCTCATT+TGG 0.264576 6_3:-75354380 Msa0959010:five_prime_UTR
AATGCTGGTGGTGGTAATAA+TGG 0.276535 6_3:-75353327 Msa0959010:CDS
TTCCTTCTTCAATTCTCAAT+TGG 0.277639 6_3:-75354225 Msa0959010:five_prime_UTR
GGTCTCATACCAGAGTTTAT+TGG 0.285611 6_3:-75349557 Msa0959010:CDS
ACTAGGTCGGGTGCAGATTC+AGG 0.291303 6_3:-75352400 Msa0959010:intron
TAGTGTAGCATTGCTAATTT+AGG 0.310864 6_3:-75347393 Msa0959010:three_prime_UTR
GGCGGAAACGGCGGAAATTT+AGG 0.312759 6_3:-75353672 Msa0959010:CDS
GGAAGAACAACATACCTTCT+TGG 0.313775 6_3:+75353050 None:intergenic
TATAAGCGTGATTTGTGAAA+TGG 0.317938 6_3:+75354430 None:intergenic
CAAAGTAATGGTGGTGATTC+CGG 0.321215 6_3:-75353696 Msa0959010:CDS
TCATTCTTCAATTCTCATTT+GGG 0.323396 6_3:-75354379 Msa0959010:five_prime_UTR
GAGGGTGGTCCGGGCGGTGG+TGG 0.325608 6_3:-75353180 Msa0959010:CDS
CAGGAGGGTGGTCCGGGCGG+TGG 0.331285 6_3:-75353183 Msa0959010:CDS
TTAACTAGAAGGTTTAAATA+TGG 0.331920 6_3:-75353486 Msa0959010:CDS
AGGGCCGCAGGAGGGTGGTC+CGG 0.341423 6_3:-75353190 Msa0959010:CDS
AGACGGCAAGATTCTTCTAT+TGG 0.351882 6_3:-75350067 Msa0959010:CDS
AGTAGCTGAATCAGAGTTAC+AGG 0.352303 6_3:-75347620 Msa0959010:CDS
ATGCTGGTGGTGGTAATAAT+GGG 0.352334 6_3:-75353326 Msa0959010:CDS
GGTCCGGGCGGTGGTGGTAA+TGG 0.353545 6_3:-75353174 Msa0959010:CDS
GGTGCAGATTCAGGAATTTC+AGG 0.353959 6_3:-75352391 Msa0959010:CDS
AGTGAGGATTTAGGTCTAAA+TGG 0.356809 6_3:-75353420 Msa0959010:CDS
AAACCGGTTCAACCGCGTTC+AGG 0.357913 6_3:-75353928 Msa0959010:CDS
TAAATGGTAGTGCTAGTAAT+TGG 0.360495 6_3:-75353404 Msa0959010:CDS
ACAATGCCGGCGGGTGGCGG+TGG 0.364775 6_3:-75353859 Msa0959010:CDS
AGAAGGTTTAAATATGGTAT+TGG 0.366946 6_3:-75353480 Msa0959010:CDS
CACCTGGGATTAATGTTGTA+AGG 0.367830 6_3:-75353218 Msa0959010:CDS
GTAAAACTCAATTAACTAGA+AGG 0.367917 6_3:-75353497 Msa0959010:CDS
TCCTTCTTCAATTCTCAATT+GGG 0.368251 6_3:-75354224 Msa0959010:five_prime_UTR
AGTTCTGATCTTATTGCATA+TGG 0.374394 6_3:-75349578 Msa0959010:CDS
CATCATGGAAGTGAGGATTT+AGG 0.375770 6_3:-75353429 Msa0959010:CDS
GGTGATTCCGGCGGCGGAAA+CGG 0.376678 6_3:-75353684 Msa0959010:CDS
TCCACGGGGTGATAACATTC+AGG 0.381577 6_3:-75350527 Msa0959010:intron
CATGGGGAGGGTCTAATTTA+GGG 0.382302 6_3:-75353140 Msa0959010:CDS
CATAAGTTGCTCTTCGGTTA+AGG 0.383500 6_3:+75349505 None:intergenic
GTCGCTTCCTGTCTTAATAT+CGG 0.385991 6_3:+75348529 None:intergenic
GGGCCGCAGGAGGGTGGTCC+GGG 0.386876 6_3:-75353189 Msa0959010:CDS
CTTCTAATGTTGGCACGAAC+TGG 0.390138 6_3:+75350034 None:intergenic
ACCCACATGGAATTTGGTTC+AGG 0.391674 6_3:-75353978 Msa0959010:CDS
ATAACCCTACCCGGAAAATC+CGG 0.394031 6_3:-75353782 Msa0959010:CDS
GGCGGCGGTGGTGGGAATGC+TGG 0.398775 6_3:-75353342 Msa0959010:CDS
TCGCCTGAACGCGGTTGAAC+CGG 0.402699 6_3:+75353925 None:intergenic
GGCGGAAATTTAGGTTCTAA+TGG 0.405329 6_3:-75353663 Msa0959010:CDS
TTGTATAACAGAATAGTTAC+TGG 0.405930 6_3:-75347465 Msa0959010:three_prime_UTR
AGCATCATCTTTACTTGAAT+CGG 0.406039 6_3:-75349987 Msa0959010:intron
GGTCTCAGTTCTTACTGAAT+AGG 0.409724 6_3:-75347444 Msa0959010:three_prime_UTR
AATTACAATGGCGGCGGTGG+TGG 0.412821 6_3:-75353351 Msa0959010:CDS
AGACCTTTACAAATCTCCTT+TGG 0.416275 6_3:+75353102 None:intergenic
TTGTGGATGTTAATGATGTT+TGG 0.416973 6_3:+75354341 None:intergenic
AAAGGATTACCTCTCTGAAA+TGG 0.417863 6_3:+75350199 None:intergenic
GGTTCAGGTAACCGTCGAAC+CGG 0.418230 6_3:-75353963 Msa0959010:CDS
TTCTGGTGAGGGTGTTCAGC+AGG 0.419447 6_3:-75351326 Msa0959010:CDS
TGTCTAGATAGTAAATGTTC+CGG 0.427339 6_3:-75350569 Msa0959010:intron
CCGGCATTGTTTGCCACCTC+CGG 0.428221 6_3:+75353872 None:intergenic
CAAACAATGCCGGCGGGTGG+CGG 0.439337 6_3:-75353862 Msa0959010:CDS
TGTAATGGTGATGTATTATA+CGG 0.440406 6_3:+75353570 None:intergenic
CACCGGTAGGTGGTGGCAAT+GGG 0.440545 6_3:-75353281 Msa0959010:CDS
TTTAACCGATGCCATGTATG+AGG 0.441190 6_3:-75348646 Msa0959010:intron
CCGGGTTCACTTTATTAAAC+CGG 0.441691 6_3:-75353944 Msa0959010:CDS
CCACCGGTAGGTGGTGGCAA+TGG 0.442868 6_3:-75353282 Msa0959010:CDS
ACATTAATCCCAGGTGCAAA+AGG 0.444033 6_3:+75353225 None:intergenic
TCAACAAATGTACCTTGTAA+TGG 0.444954 6_3:+75353555 None:intergenic
GGTAGAGTGAGTAATAATAA+TGG 0.445653 6_3:-75353528 Msa0959010:CDS
GGCTGACAAGCTAACTAAGA+TGG 0.447213 6_3:+75349526 None:intergenic
TTGATGGGTCCAACAGGATC+AGG 0.448560 6_3:-75352319 Msa0959010:intron
TGGGGCCGTGGTGGGTCGGA+TGG 0.449326 6_3:-75353813 Msa0959010:CDS
TGTTTACCAAGAGCATGTTT+TGG 0.455263 6_3:+75348872 None:intergenic
ACCGGTGGTGGCCATGTCTC+CGG 0.455689 6_3:+75353297 None:intergenic
TGCCGGCGGGTGGCGGTGGT+CGG 0.456846 6_3:-75353855 Msa0959010:CDS
TCTAATGGTGATGGTGGTGA+TGG 0.460265 6_3:-75353648 Msa0959010:CDS
AGAGAGAGAGAAGATAAAAT+GGG 0.460657 6_3:+75354523 None:intergenic
TCTTCGCGGAGATGGTGCTT+TGG 0.461133 6_3:-75348435 Msa0959010:CDS
CAAGTGGGGCCGTGGTGGGT+CGG 0.461546 6_3:-75353817 Msa0959010:CDS
ATGAATACTTGCCTGTGTTA+AGG 0.462855 6_3:+75352131 None:intergenic
AGAAATTACAATGGCGGCGG+TGG 0.463018 6_3:-75353354 Msa0959010:CDS
GCAGTACCTAGCTAAGATAA+AGG 0.467142 6_3:-75348411 Msa0959010:CDS
ATTACTTTGCATATGACGAT+TGG 0.468868 6_3:+75353710 None:intergenic
ATTTCCGCCGTTTCCGCCGC+CGG 0.469377 6_3:+75353677 None:intergenic
GGCGGTGGTGGGAATGCTGG+TGG 0.469456 6_3:-75353339 Msa0959010:CDS
ATAAGCGTGATTTGTGAAAT+GGG 0.474583 6_3:+75354431 None:intergenic
AACTAACCCTTTCGGTAAAG+TGG 0.481023 6_3:+75352590 None:intergenic
AGTTGACAAGATTACTAAGA+AGG 0.483209 6_3:-75351460 Msa0959010:intron
ATAGTAAATGTTCCGGAGAA+AGG 0.485530 6_3:-75350562 Msa0959010:CDS
TCGCTTCCTGTCTTAATATC+GGG 0.487087 6_3:+75348530 None:intergenic
AGTGTTTATCGGTGAAGAGA+TGG 0.487913 6_3:+75354548 None:intergenic
TGGTGGCAATGGGAATGGTT+TGG 0.489942 6_3:-75353271 Msa0959010:CDS
TGAATCAGAGTTACAGGATA+GGG 0.494926 6_3:-75347614 Msa0959010:CDS
ATTAATGTTGTAAGGGCTAG+AGG 0.496036 6_3:-75353210 Msa0959010:CDS
CCGCAGGAGGGTGGTCCGGG+CGG 0.496809 6_3:-75353186 Msa0959010:CDS
TACCTGCATAAGTTGCTCTT+CGG 0.497540 6_3:+75349499 None:intergenic
TAAAATGGGAGAGTGTTTAT+CGG 0.498413 6_3:+75354537 None:intergenic
TTGCCACCACCTACCGGTGG+TGG 0.499085 6_3:+75353285 None:intergenic
AGTAAAAGAACTAACCCTTT+CGG 0.501191 6_3:+75352582 None:intergenic
GCTGACAAGCTAACTAAGAT+GGG 0.502552 6_3:+75349527 None:intergenic
AAGGAAATGACGTCATTTCG+CGG 0.502799 6_3:-75354002 Msa0959010:CDS
TCACTAACAGCTCCAGGATG+TGG 0.502922 6_3:-75348467 Msa0959010:CDS
CGGTGGTCGGAGTGCAAGAA+AGG 0.505046 6_3:-75353842 Msa0959010:CDS
CCAGGTGCAAAAGGAGGACC+TGG 0.506343 6_3:+75353234 None:intergenic
GGTGGTGGGAATGCTGGTGG+TGG 0.511422 6_3:-75353336 Msa0959010:CDS
TATTCTACCGCTTCTAATGT+TGG 0.511712 6_3:+75350024 None:intergenic
GGTACAAGTGGGGCCGTGGT+GGG 0.513008 6_3:-75353821 Msa0959010:CDS
CCGGAGGTGGCAAACAATGC+CGG 0.513244 6_3:-75353872 Msa0959010:CDS
AGGTACAAGTGGGGCCGTGG+TGG 0.513332 6_3:-75353822 Msa0959010:CDS
ACCATGCCACTTTACCGAAA+GGG 0.513748 6_3:-75352596 Msa0959010:intron
AATGGTGGTGATTCCGGCGG+CGG 0.515429 6_3:-75353690 Msa0959010:CDS
GTTCAGGTAACCGTCGAACC+GGG 0.518609 6_3:-75353962 Msa0959010:CDS
TTGGCTGTACATACTCCTCC+AGG 0.518736 6_3:-75353252 Msa0959010:CDS
CACATCATAGTCGCCGGAGG+TGG 0.519599 6_3:-75353885 Msa0959010:CDS
TATTAAGGCTCTTAAACCCC+TGG 0.520946 6_3:+75348677 None:intergenic
TTCCCATTGCCACCACCTAC+CGG 0.522329 6_3:+75353279 None:intergenic
GAAAGGTACAAGTGGGGCCG+TGG 0.522337 6_3:-75353825 Msa0959010:CDS
GTAGGTGGTGGCAATGGGAA+TGG 0.529951 6_3:-75353276 Msa0959010:CDS
CCAGATCAATACCTCATACA+TGG 0.530171 6_3:+75348635 None:intergenic
TACCCGGAAAATCCGGGCTG+AGG 0.530265 6_3:-75353775 Msa0959010:CDS
AATGGTGATGGTGGTGATGG+TGG 0.530330 6_3:-75353645 Msa0959010:CDS
ACAGAACCAAAACATGCTCT+TGG 0.532014 6_3:-75348878 Msa0959010:CDS
AACCGAAGAGCAACTTATGC+AGG 0.532015 6_3:-75349501 Msa0959010:intron
TTACAAATCTCCTTTGGTGA+AGG 0.533110 6_3:+75353108 None:intergenic
AGCCGAGATGTTTCTGGTGA+GGG 0.533599 6_3:-75351337 Msa0959010:CDS
CTGAATCCTTTATCTTAGCT+AGG 0.533656 6_3:+75348405 None:intergenic
TGGTAATAATGGGGAGCCGC+CGG 0.535232 6_3:-75353316 Msa0959010:CDS
TCACCAAAGGAGATTTGTAA+AGG 0.535509 6_3:-75353105 Msa0959010:CDS
ACTATAATGTTACATGCTCA+TGG 0.536473 6_3:+75347570 None:intergenic
CTGTGTTAAGGTTGTAGCAT+CGG 0.538448 6_3:+75352143 None:intergenic
AGTATTAAGAGTGGTCATCA+TGG 0.538727 6_3:-75353444 Msa0959010:CDS
AATTTAGGTTCTAATGGTGA+TGG 0.540340 6_3:-75353657 Msa0959010:CDS
ATGGGGAGCCGCCGGAGACA+TGG 0.542206 6_3:-75353308 Msa0959010:CDS
GTAGGATCACTAACAGCTCC+AGG 0.543291 6_3:-75348473 Msa0959010:CDS
ACCCAATTGAGAATTGAAGA+AGG 0.544831 6_3:+75354223 None:intergenic
TGGCAAACAATGCCGGCGGG+TGG 0.545347 6_3:-75353865 Msa0959010:CDS
CTCCGACCACCGCCACCCGC+CGG 0.547532 6_3:+75353853 None:intergenic
AGGGCTAGAGGGCCGCAGGA+GGG 0.549216 6_3:-75353198 Msa0959010:CDS
CTGAATCAGAGTTACAGGAT+AGG 0.553897 6_3:-75347615 Msa0959010:CDS
AATCGTCATATGCAAAGTAA+TGG 0.555241 6_3:-75353708 Msa0959010:CDS
AGACAAGTAGAAATGTGAAG+AGG 0.555568 6_3:+75354582 None:intergenic
GAAATTTGGATCTATAAGAG+TGG 0.556091 6_3:+75354263 None:intergenic
CCGGTTTAATAAAGTGAACC+CGG 0.558513 6_3:+75353944 None:intergenic
ATAAAGTGAACCCGGTTCGA+CGG 0.559005 6_3:+75353952 None:intergenic
TAACCCTACCCGGAAAATCC+GGG 0.559962 6_3:-75353781 Msa0959010:CDS
GAAAGTAATAGTATTAAGAG+TGG 0.560135 6_3:-75353453 Msa0959010:CDS
AAGGGCTAGAGGGCCGCAGG+AGG 0.560420 6_3:-75353199 Msa0959010:CDS
TGGCCACCACCGGTAGGTGG+TGG 0.561955 6_3:-75353288 Msa0959010:CDS
CACCATGCCACTTTACCGAA+AGG 0.562697 6_3:-75352597 Msa0959010:CDS
CAGATTCCCGATATTAAGAC+AGG 0.562888 6_3:-75348536 Msa0959010:CDS
ATTACAATGGCGGCGGTGGT+GGG 0.563135 6_3:-75353350 Msa0959010:CDS
TGGACAAGGTAGAGCCAAGA+AGG 0.565290 6_3:-75353064 Msa0959010:intron
GAAGGATTTGCCTTCACCAA+AGG 0.567287 6_3:-75353118 Msa0959010:CDS
ACCTGGGATTAATGTTGTAA+GGG 0.569494 6_3:-75353217 Msa0959010:CDS
GTAGCATCGGCAATGACAAA+CGG 0.571154 6_3:+75352156 None:intergenic
AGGTGGCAAACAATGCCGGC+GGG 0.572353 6_3:-75353868 Msa0959010:CDS
TGATTTGTGAAATGGGTTTG+CGG 0.574333 6_3:+75354438 None:intergenic
AAACAGTACAAGAAATTAGT+CGG 0.574698 6_3:-75348854 Msa0959010:CDS
CACCCTCACCAGAAACATCT+CGG 0.574800 6_3:+75351335 None:intergenic
GCCGGAGACATGGCCACCAC+CGG 0.576486 6_3:-75353298 Msa0959010:CDS
AGTAACTATTCTGTTATACA+AGG 0.577182 6_3:+75347467 None:intergenic
CTGAATCACATCATAGTCGC+CGG 0.577628 6_3:-75353891 Msa0959010:CDS
TTGAGAAATTACAATGGCGG+CGG 0.583843 6_3:-75353357 Msa0959010:CDS
GCCCTTACAACATTAATCCC+AGG 0.585045 6_3:+75353216 None:intergenic
ACCCTTTCGGTAAAGTGGCA+TGG 0.587487 6_3:+75352595 None:intergenic
GGGAATCGTCCAATAAACTC+TGG 0.588253 6_3:+75349548 None:intergenic
GAGTGCAAGAAAGGTACAAG+TGG 0.594838 6_3:-75353833 Msa0959010:CDS
GTTGTTGATGAAGAATCAGT+AGG 0.595178 6_3:-75348491 Msa0959010:CDS
AGCTAAGATAAAGGATTCAG+AGG 0.595722 6_3:-75348402 Msa0959010:intron
CAGCCGAGATGTTTCTGGTG+AGG 0.600057 6_3:-75351338 Msa0959010:CDS
CAATACCTCATACATGGCAT+CGG 0.601448 6_3:+75348641 None:intergenic
AGGAAATGACGTCATTTCGC+GGG 0.601976 6_3:-75354001 Msa0959010:CDS
TCACCATTACCACCACCGCC+CGG 0.602216 6_3:+75353171 None:intergenic
ATGTTCCGGAGAAAGGAGCC+AGG 0.602337 6_3:-75350555 Msa0959010:CDS
CGTCATATGCAAAGTAATGG+TGG 0.604007 6_3:-75353705 Msa0959010:CDS
AGAGTGAGTAATAATAATGG+TGG 0.605589 6_3:-75353525 Msa0959010:CDS
TGATTCTTCATCAACAACTA+CGG 0.607482 6_3:+75348496 None:intergenic
GATTCCGGCGGCGGAAACGG+CGG 0.609609 6_3:-75353681 Msa0959010:CDS
TCTTGAGATGAATCGAGACA+TGG 0.613428 6_3:+75354037 None:intergenic
GTGAGAAGAATGCATGGGGA+GGG 0.615617 6_3:-75353152 Msa0959010:CDS
CCGCCCGGACCACCCTCCTG+CGG 0.618646 6_3:+75353186 None:intergenic
GTGGACAATTAGCCTCAGCC+CGG 0.619101 6_3:+75353763 None:intergenic
ACATGGCCACCACCGGTAGG+TGG 0.620476 6_3:-75353291 Msa0959010:CDS
TTAGGTTCTAATGGTGATGG+TGG 0.621993 6_3:-75353654 Msa0959010:CDS
TATAATACATCACCATTACA+AGG 0.622701 6_3:-75353567 Msa0959010:CDS
GGGAGGGTCTAATTTAGGGA+AGG 0.625761 6_3:-75353136 Msa0959010:CDS
AATGTTATACCTGATCCTGT+TGG 0.626529 6_3:+75352310 None:intergenic
AGTGCAAGAAAGGTACAAGT+GGG 0.631033 6_3:-75353832 Msa0959010:CDS
GAGTGGTCATCATGGAAGTG+AGG 0.633503 6_3:-75353436 Msa0959010:CDS
GAGTTGAAATCGCCTGAACG+CGG 0.635875 6_3:+75353916 None:intergenic
TCAGTTCTTACTGAATAGGA+AGG 0.636853 6_3:-75347440 Msa0959010:three_prime_UTR
GTAATGGTGAGAAGAATGCA+TGG 0.637507 6_3:-75353158 Msa0959010:CDS
GATAAGTTTGTTATTGGACA+AGG 0.639549 6_3:-75353078 Msa0959010:CDS
GGGCTGAGGCTAATTGTCCA+CGG 0.640912 6_3:-75353761 Msa0959010:CDS
TATGATTAAGATTGTGTGTG+AGG 0.642789 6_3:+75354466 None:intergenic
ACCTGAACCAAATTCCATGT+GGG 0.644247 6_3:+75353977 None:intergenic
TTAATGTTGTAAGGGCTAGA+GGG 0.644838 6_3:-75353209 Msa0959010:CDS
TAATGGTGAGAAGAATGCAT+GGG 0.644865 6_3:-75353157 Msa0959010:CDS
CTAACAGCTCCAGGATGTGG+AGG 0.645580 6_3:-75348464 Msa0959010:CDS
GTTCGTGCCAACATTAGAAG+CGG 0.646985 6_3:-75350031 Msa0959010:CDS
GAGACATGGCCACCACCGGT+AGG 0.647018 6_3:-75353294 Msa0959010:CDS
TTGGCTTGAAGTGTCAATGT+GGG 0.651884 6_3:-75353385 Msa0959010:CDS
GGTGAGAAGAATGCATGGGG+AGG 0.654081 6_3:-75353153 Msa0959010:CDS
GTGATATGCATAACCCTACC+CGG 0.654155 6_3:-75353791 Msa0959010:CDS
TTAATCCCAGGTGCAAAAGG+AGG 0.655193 6_3:+75353228 None:intergenic
ACTTTGAGAAATTACAATGG+CGG 0.658366 6_3:-75353360 Msa0959010:CDS
CTTGAGATGAATCGAGACAT+GGG 0.664663 6_3:+75354038 None:intergenic
TATCACCATCCGACCCACCA+CGG 0.665482 6_3:+75353808 None:intergenic
CGATGCTACAACCTTAACAC+AGG 0.665547 6_3:-75352142 Msa0959010:intron
TACCTGAACCAAATTCCATG+TGG 0.665846 6_3:+75353976 None:intergenic
ACCTGAATGTTATCACCCCG+TGG 0.667143 6_3:+75350526 None:intergenic
AATGATAGCGAAGAAAGCAA+TGG 0.670703 6_3:-75348715 Msa0959010:CDS
AATGTTGCAGCAGCTCAACA+AGG 0.670896 6_3:-75351501 Msa0959010:CDS
GAGGTGGCAAACAATGCCGG+CGG 0.671349 6_3:-75353869 Msa0959010:CDS
AATACTATATAAGCTACTTG+CGG 0.672585 6_3:-75351934 Msa0959010:intron
CCATTGCCACCACCTACCGG+TGG 0.674449 6_3:+75353282 None:intergenic
TGCTGGTGGTGGTAATAATG+GGG 0.676168 6_3:-75353325 Msa0959010:CDS
CTGACAAGCTAACTAAGATG+GGG 0.678326 6_3:+75349528 None:intergenic
GTAACTATTCTGTTATACAA+GGG 0.682419 6_3:+75347468 None:intergenic
GGTGGTGGCCATGTCTCCGG+CGG 0.683760 6_3:+75353300 None:intergenic
AATGGTGAGAAGAATGCATG+GGG 0.695640 6_3:-75353156 Msa0959010:CDS
AGTAATGGTGGTGATTCCGG+CGG 0.695700 6_3:-75353693 Msa0959010:CDS
GGTGCAAAAGGAGGACCTGG+AGG 0.695787 6_3:+75353237 None:intergenic
AATCACATCATAGTCGCCGG+AGG 0.701574 6_3:-75353888 Msa0959010:CDS
TTCATATCTTTGGAACACCG+TGG 0.701650 6_3:+75353744 None:intergenic
GAAACTTTGAGAAATTACAA+TGG 0.710583 6_3:-75353363 Msa0959010:CDS
GTGCAAGAAAGGTACAAGTG+GGG 0.716514 6_3:-75353831 Msa0959010:CDS
ATTGGCTTGAAGTGTCAATG+TGG 0.726659 6_3:-75353386 Msa0959010:CDS
CAACAACTACGGCGTCAATG+CGG 0.734475 6_3:+75348507 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr6_3:75352576-75352595 Msa0959010:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr6_3:75352575-75352594 Msa0959010:intron 0.0%
!!! ATAACATTTAAAATCTATTA+TGG + chr6_3:75350516-75350535 None:intergenic 10.0%
!!! AAAGTATATTATGATATTTT+GGG + chr6_3:75351207-75351226 None:intergenic 10.0%
!!! AAAAGTATATTATGATATTT+TGG + chr6_3:75351208-75351227 None:intergenic 10.0%
!! AAGATTAAGAAAAAAATATA+TGG + chr6_3:75354257-75354276 None:intergenic 10.0%
!!! TTTTTTTTATATGAAGTTAA+TGG - chr6_3:75354590-75354609 Msa0959010:five_prime_UTR 10.0%
!!! GTAAGTTTTAATTATACATT+TGG - chr6_3:75349081-75349100 Msa0959010:intron 15.0%
!!! TTTTAATTATACATTTGGAA+AGG - chr6_3:75349086-75349105 Msa0959010:intron 15.0%
!!! ATTTTTACTTATTTTGTCTT+GGG - chr6_3:75349872-75349891 Msa0959010:intron 15.0%
!!! GTTATGATATATATTTTTAC+AGG - chr6_3:75350531-75350550 Msa0959010:CDS 15.0%
!!! TTTTTTAATGAAATCTGTTA+TGG - chr6_3:75350682-75350701 Msa0959010:intron 15.0%
!!! TTTTTAATGAAATCTGTTAT+GGG - chr6_3:75350683-75350702 Msa0959010:intron 15.0%
!!! AAATAGTATATTATTTTGCT+TGG - chr6_3:75350951-75350970 Msa0959010:intron 15.0%
!!! AAGTATATTATGATATTTTG+GGG + chr6_3:75351206-75351225 None:intergenic 15.0%
!!! ATAATATTTTTTCAAGACTA+AGG + chr6_3:75351738-75351757 None:intergenic 15.0%
!!! TCTATTTTTTCATATCATTA+TGG - chr6_3:75352198-75352217 Msa0959010:CDS 15.0%
!! AACTTGTATTTATATAGATT+TGG + chr6_3:75352801-75352820 None:intergenic 15.0%
!! ATAAATACAAGTTTAATAAC+TGG - chr6_3:75352808-75352827 Msa0959010:intron 15.0%
!! AAAATATATGGTCAAAAATA+TGG + chr6_3:75354245-75354264 None:intergenic 15.0%
!! GATGAAAAAGATATTGAAAT+TGG + chr6_3:75347507-75347526 None:intergenic 20.0%
!!! ATGTTTTTTTTCTTTGTTTG+TGG + chr6_3:75347587-75347606 None:intergenic 20.0%
!!! GTTATAAAAATTGTGTCTTT+TGG + chr6_3:75347818-75347837 None:intergenic 20.0%
!! GAAAAACAAATTCATATCTT+TGG + chr6_3:75348177-75348196 None:intergenic 20.0%
!! TTAACTAGAAGGTTTAAATA+TGG - chr6_3:75348422-75348441 Msa0959010:CDS 20.0%
!! ACATAAACCATTAATTAATG+AGG + chr6_3:75349241-75349260 None:intergenic 20.0%
!! ATAAATGTCTGGAAAATTTA+CGG - chr6_3:75349418-75349437 Msa0959010:intron 20.0%
!! TAATCTAACTTTCATCATAT+AGG - chr6_3:75349686-75349705 Msa0959010:intron 20.0%
!! AATCTAACTTTCATCATATA+GGG - chr6_3:75349687-75349706 Msa0959010:intron 20.0%
!!! GATTTTTACTTATTTTGTCT+TGG - chr6_3:75349871-75349890 Msa0959010:intron 20.0%
!!! TTATGACAATTTCTAAGATA+CGG + chr6_3:75350246-75350265 None:intergenic 20.0%
!!! ACGATTATTTTTTTCTGTAT+AGG - chr6_3:75350373-75350392 Msa0959010:intron 20.0%
!! AATAAAAAATCATTGCGTTT+AGG + chr6_3:75351320-75351339 None:intergenic 20.0%
!! ATATAGATGTCTAAACAAAA+CGG + chr6_3:75351441-75351460 None:intergenic 20.0%
!!! AAGAACATTCTTTTTATATG+TGG - chr6_3:75351660-75351679 Msa0959010:intron 20.0%
!!! TTGATTTTAACTATATGTGT+CGG + chr6_3:75352174-75352193 None:intergenic 20.0%
!!! TTTTATACTCATTTGGAATT+TGG + chr6_3:75352283-75352302 None:intergenic 20.0%
!! AAAAGCAATATAAACAATGA+GGG + chr6_3:75352437-75352456 None:intergenic 20.0%
!! TTCATAGGATTAACAAAATA+TGG - chr6_3:75352499-75352518 Msa0959010:intron 20.0%
!! AAGCAGGATAAATATATATA+TGG + chr6_3:75352665-75352684 None:intergenic 20.0%
!!! GTATTTATATAGATTTGGTT+AGG + chr6_3:75352796-75352815 None:intergenic 20.0%
!! ATGACAATGAAAATATTGTT+TGG - chr6_3:75352994-75353013 Msa0959010:intron 20.0%
!!! GGTTAAAATGTTTTCTATTA+AGG + chr6_3:75353249-75353268 None:intergenic 20.0%
!!! TTGACTGATTTTTTTTCTTT+TGG - chr6_3:75353551-75353570 Msa0959010:CDS 20.0%
!!! TGACTGATTTTTTTTCTTTT+GGG - chr6_3:75353552-75353571 Msa0959010:CDS 20.0%
!! TTGGGAATGATTATTATAAA+AGG - chr6_3:75353570-75353589 Msa0959010:CDS 20.0%
!! GACTATAATTGAGTAAAAAT+CGG - chr6_3:75353748-75353767 Msa0959010:CDS 20.0%
!!! TACTCTGAAATTTATGTAAA+CGG - chr6_3:75354097-75354116 Msa0959010:five_prime_UTR 20.0%
!!! TTTTTTTCTTAATCTTTTGC+AGG - chr6_3:75354261-75354280 Msa0959010:five_prime_UTR 20.0%
!! GAAAAATTATACACTGAATA+TGG + chr6_3:75354366-75354385 None:intergenic 20.0%
! TTCATTCTTCAATTCTCATT+TGG - chr6_3:75347528-75347547 Msa0959010:three_prime_UTR 25.0%
! TCATTCTTCAATTCTCATTT+GGG - chr6_3:75347529-75347548 Msa0959010:three_prime_UTR 25.0%
!! ATCTATAAGAGTGGTTTTTA+TGG + chr6_3:75347639-75347658 None:intergenic 25.0%
! GATGAAAAAGAAGTGAAATT+TGG + chr6_3:75347662-75347681 None:intergenic 25.0%
!! TGTAATGGTGATGTATTATA+CGG + chr6_3:75348341-75348360 None:intergenic 25.0%
! TATAATACATCACCATTACA+AGG - chr6_3:75348341-75348360 Msa0959010:intron 25.0%
! GTAAAACTCAATTAACTAGA+AGG - chr6_3:75348411-75348430 Msa0959010:CDS 25.0%
! AGAAGGTTTAAATATGGTAT+TGG - chr6_3:75348428-75348447 Msa0959010:CDS 25.0%
! GAAAGTAATAGTATTAAGAG+TGG - chr6_3:75348455-75348474 Msa0959010:CDS 25.0%
!! GAAACTTTGAGAAATTACAA+TGG - chr6_3:75348545-75348564 Msa0959010:intron 25.0%
!! TGATAACAGTAAATGGATTT+GGG + chr6_3:75348882-75348901 None:intergenic 25.0%
!! TTGATAACAGTAAATGGATT+TGG + chr6_3:75348883-75348902 None:intergenic 25.0%
! GTATATATGTTCTATCGTAT+AGG - chr6_3:75348970-75348989 Msa0959010:intron 25.0%
! AATTAATGAGGTACAATCAA+AGG + chr6_3:75349229-75349248 None:intergenic 25.0%
! GATTGTACCTCATTAATTAA+TGG - chr6_3:75349231-75349250 Msa0959010:intron 25.0%
! TATATGTGATGATAAATGTC+TGG - chr6_3:75349407-75349426 Msa0959010:intron 25.0%
!! TCTATTTTATGTGACTGAAA+TGG - chr6_3:75349474-75349493 Msa0959010:intron 25.0%
!! TATGAAATGTTCTGATTTTC+AGG - chr6_3:75349923-75349942 Msa0959010:intron 25.0%
! AATACTATATAAGCTACTTG+CGG - chr6_3:75349974-75349993 Msa0959010:intron 25.0%
! ATTGTGATCACAATAAATAG+CGG - chr6_3:75350064-75350083 Msa0959010:CDS 25.0%
!!! GCATCAACAATATTTGTTAT+CGG + chr6_3:75350896-75350915 None:intergenic 25.0%
! CAAATATTGTTGATGCATTA+TGG - chr6_3:75350900-75350919 Msa0959010:intron 25.0%
! GCATTATGGTAATTTCAATT+AGG - chr6_3:75350914-75350933 Msa0959010:intron 25.0%
!!! TAGTATATTATTTTGCTTGG+TGG - chr6_3:75350954-75350973 Msa0959010:intron 25.0%
!!! AGTATATTATTTTGCTTGGT+GGG - chr6_3:75350955-75350974 Msa0959010:intron 25.0%
! TATAACTTGAAGCTAGTATT+TGG - chr6_3:75351137-75351156 Msa0959010:intron 25.0%
! GAAATGCATTTCTATTGTTA+TGG - chr6_3:75351525-75351544 Msa0959010:intron 25.0%
!! AACATTCTTTTTATATGTGG+TGG - chr6_3:75351663-75351682 Msa0959010:intron 25.0%
!! TAAATGTTTTACACTCGTAT+TGG - chr6_3:75351773-75351792 Msa0959010:intron 25.0%
! TATCAATCAAATAAACCAGA+CGG - chr6_3:75351824-75351843 Msa0959010:intron 25.0%
! AGATATAACAATCAACTACA+CGG + chr6_3:75352252-75352271 None:intergenic 25.0%
! CAAAAGCAATATAAACAATG+AGG + chr6_3:75352438-75352457 None:intergenic 25.0%
! AAATTAGGAAGAGATATGAT+AGG + chr6_3:75352463-75352482 None:intergenic 25.0%
! ACTAATTGTTCAGAGAAATT+AGG + chr6_3:75352478-75352497 None:intergenic 25.0%
! AAACAGTACAAGAAATTAGT+CGG - chr6_3:75353054-75353073 Msa0959010:intron 25.0%
! AGTGGGAAAATAATATAGAA+TGG - chr6_3:75354053-75354072 Msa0959010:exon 25.0%
! TAGCTACGTAAAGAAAATTA+TGG + chr6_3:75354079-75354098 None:intergenic 25.0%
!! CTGTTATTTACAATAGTTCT+AGG - chr6_3:75354219-75354238 Msa0959010:five_prime_UTR 25.0%
! GTAACTATTCTGTTATACAA+GGG + chr6_3:75354443-75354462 None:intergenic 25.0%
! AGTAACTATTCTGTTATACA+AGG + chr6_3:75354444-75354463 None:intergenic 25.0%
! TTGTATAACAGAATAGTTAC+TGG - chr6_3:75354443-75354462 Msa0959010:five_prime_UTR 25.0%
!!! CATATTTCCATTTGTTTTTG+AGG - chr6_3:75354550-75354569 Msa0959010:five_prime_UTR 25.0%
!! TAAAATGGGAGAGTGTTTAT+CGG + chr6_3:75347374-75347393 None:intergenic 30.0%
AGAGAGAGAGAAGATAAAAT+GGG + chr6_3:75347388-75347407 None:intergenic 30.0%
TATGATTAAGATTGTGTGTG+AGG + chr6_3:75347445-75347464 None:intergenic 30.0%
! ATAAGCGTGATTTGTGAAAT+GGG + chr6_3:75347480-75347499 None:intergenic 30.0%
! TATAAGCGTGATTTGTGAAA+TGG + chr6_3:75347481-75347500 None:intergenic 30.0%
TTGTGGATGTTAATGATGTT+TGG + chr6_3:75347570-75347589 None:intergenic 30.0%
GAAATTTGGATCTATAAGAG+TGG + chr6_3:75347648-75347667 None:intergenic 30.0%
TTCCTTCTTCAATTCTCAAT+TGG - chr6_3:75347683-75347702 Msa0959010:intron 30.0%
TCCTTCTTCAATTCTCAATT+GGG - chr6_3:75347684-75347703 Msa0959010:intron 30.0%
CTCAAGATGCAAAAAAATGA+AGG - chr6_3:75347887-75347906 Msa0959010:intron 30.0%
ATTACTTTGCATATGACGAT+TGG + chr6_3:75348201-75348220 None:intergenic 30.0%
AATCGTCATATGCAAAGTAA+TGG - chr6_3:75348200-75348219 Msa0959010:intron 30.0%
! AATTTAGGTTCTAATGGTGA+TGG - chr6_3:75348251-75348270 Msa0959010:intron 30.0%
!! TGATACGCTGTTTTACAATT+TGG + chr6_3:75348311-75348330 None:intergenic 30.0%
TCAACAAATGTACCTTGTAA+TGG + chr6_3:75348356-75348375 None:intergenic 30.0%
! CAAGGTACATTTGTTGAAAT+TGG - chr6_3:75348359-75348378 Msa0959010:intron 30.0%
GGTAGAGTGAGTAATAATAA+TGG - chr6_3:75348380-75348399 Msa0959010:intron 30.0%
AGAGTGAGTAATAATAATGG+TGG - chr6_3:75348383-75348402 Msa0959010:intron 30.0%
! TAAATGGTAGTGCTAGTAAT+TGG - chr6_3:75348504-75348523 Msa0959010:CDS 30.0%
! ACTTTGAGAAATTACAATGG+CGG - chr6_3:75348548-75348567 Msa0959010:intron 30.0%
!! GGTCTTGATAAGTTTGTTAT+TGG - chr6_3:75348824-75348843 Msa0959010:intron 30.0%
!! GATAAGTTTGTTATTGGACA+AGG - chr6_3:75348830-75348849 Msa0959010:intron 30.0%
!! CCAGTATTGATAACAGTAAA+TGG + chr6_3:75348889-75348908 None:intergenic 30.0%
CCATTTACTGTTATCAATAC+TGG - chr6_3:75348886-75348905 Msa0959010:CDS 30.0%
TTTACTGTTATCAATACTGG+CGG - chr6_3:75348889-75348908 Msa0959010:intron 30.0%
ACAATAGAAAACAGACAAAC+GGG + chr6_3:75348942-75348961 None:intergenic 30.0%
CACAATAGAAAACAGACAAA+CGG + chr6_3:75348943-75348962 None:intergenic 30.0%
! ATGGTTTATGTTTCTGTTGA+AGG - chr6_3:75349250-75349269 Msa0959010:intron 30.0%
AGTAAAAGAACTAACCCTTT+CGG + chr6_3:75349329-75349348 None:intergenic 30.0%
! TTTTCTTTATTCACGTTCCT+CGG - chr6_3:75349359-75349378 Msa0959010:intron 30.0%
! ATTTTATGTGACTGAAATGG+TGG - chr6_3:75349477-75349496 Msa0959010:intron 30.0%
!! AAATGGTGGATTTCAATACT+AGG - chr6_3:75349491-75349510 Msa0959010:intron 30.0%
! AAAGAGTAACGTTCTTTTGA+TGG - chr6_3:75349573-75349592 Msa0959010:CDS 30.0%
! AAGAGTAACGTTCTTTTGAT+GGG - chr6_3:75349574-75349593 Msa0959010:CDS 30.0%
!!! ACTTTTTTATGCTGAACACT+TGG + chr6_3:75349834-75349853 None:intergenic 30.0%
AGTTGACAAGATTACTAAGA+AGG - chr6_3:75350448-75350467 Msa0959010:intron 30.0%
GCATTATTAAAAATGCTCGA+AGG - chr6_3:75350604-75350623 Msa0959010:intron 30.0%
! TTGCTTCTTTATTCTAGTTG+TGG + chr6_3:75350781-75350800 None:intergenic 30.0%
! AAGAAGCAATTTGTTCACAT+AGG - chr6_3:75350792-75350811 Msa0959010:intron 30.0%
!! TTTGTTCACATAGGTTGATT+AGG - chr6_3:75350801-75350820 Msa0959010:intron 30.0%
TCTATTACATAATACGAGCA+AGG - chr6_3:75350850-75350869 Msa0959010:intron 30.0%
!!! ATCTGAATTTTGAGTTTCGA+AGG - chr6_3:75350978-75350997 Msa0959010:intron 30.0%
!! CAAATTTTTGAGAGTTCCAT+AGG - chr6_3:75351067-75351086 Msa0959010:intron 30.0%
CAAAATCAATAATGCACCTA+TGG + chr6_3:75351086-75351105 None:intergenic 30.0%
! TTTGGGGTTTGTTTAATTCA+AGG + chr6_3:75351190-75351209 None:intergenic 30.0%
ATTCGTAAATGCCATTCTTA+CGG - chr6_3:75351291-75351310 Msa0959010:intron 30.0%
TGTCTAGATAGTAAATGTTC+CGG - chr6_3:75351339-75351358 Msa0959010:CDS 30.0%
!! AACATTCAGGTATGTTGTTT+TGG - chr6_3:75351394-75351413 Msa0959010:intron 30.0%
TTGAAAAAACCATTTCAGAG+AGG - chr6_3:75351700-75351719 Msa0959010:intron 30.0%
!! TTTTCAAGACTAAGGCATAA+AGG + chr6_3:75351730-75351749 None:intergenic 30.0%
!!! CAAGATTCTTCTATTGGTTT+TGG - chr6_3:75351847-75351866 Msa0959010:intron 30.0%
AGCATCATCTTTACTTGAAT+CGG - chr6_3:75351921-75351940 Msa0959010:intron 30.0%
! AGTTCTGATCTTATTGCATA+TGG - chr6_3:75352330-75352349 Msa0959010:CDS 30.0%
TCTGAACAATTAGTGTTCAT+AGG - chr6_3:75352484-75352503 Msa0959010:intron 30.0%
GATATTTAACAGAAAGCTAC+AGG - chr6_3:75352552-75352571 Msa0959010:intron 30.0%
!! TCTCTAGAACTTTATCAATG+TGG - chr6_3:75352897-75352916 Msa0959010:intron 30.0%
! CAATGTGGAATTCTTGATTT+TGG - chr6_3:75352912-75352931 Msa0959010:intron 30.0%
ATACTTTAATCTTGCACTTC+AGG - chr6_3:75353139-75353158 Msa0959010:CDS 30.0%
TGATTCTTCATCAACAACTA+CGG + chr6_3:75353415-75353434 None:intergenic 30.0%
! AGAGGTACAATCTTTCATAA+AGG - chr6_3:75353524-75353543 Msa0959010:CDS 30.0%
GTAAAAATCGGAGTGAAAAT+CGG - chr6_3:75353760-75353779 Msa0959010:CDS 30.0%
TGTTCATCTGAATTCATGTT+GGG - chr6_3:75353923-75353942 Msa0959010:CDS 30.0%
! ATTTTCCCACTCAATAAAAG+TGG + chr6_3:75354044-75354063 None:intergenic 30.0%
TTGATCTAATTCAACGAGAT+GGG + chr6_3:75354139-75354158 None:intergenic 30.0%
ACTATAATGTTACATGCTCA+TGG + chr6_3:75354341-75354360 None:intergenic 30.0%
TAGTGTAGCATTGCTAATTT+AGG - chr6_3:75354515-75354534 Msa0959010:five_prime_UTR 30.0%
CAAGATTCCTCAAAAACAAA+TGG + chr6_3:75354560-75354579 None:intergenic 30.0%
AGACAAGTAGAAATGTGAAG+AGG + chr6_3:75347329-75347348 None:intergenic 35.0%
GAGAGAGAGAGAAGATAAAA+TGG + chr6_3:75347389-75347408 None:intergenic 35.0%
! TGATTTGTGAAATGGGTTTG+CGG + chr6_3:75347473-75347492 None:intergenic 35.0%
ACCCAATTGAGAATTGAAGA+AGG + chr6_3:75347688-75347707 None:intergenic 35.0%
AGTATTAAGAGTGGTCATCA+TGG - chr6_3:75348464-75348483 Msa0959010:CDS 35.0%
AGTGAGGATTTAGGTCTAAA+TGG - chr6_3:75348488-75348507 Msa0959010:CDS 35.0%
ACCTGGGATTAATGTTGTAA+GGG - chr6_3:75348691-75348710 Msa0959010:CDS 35.0%
ATTAATGTTGTAAGGGCTAG+AGG - chr6_3:75348698-75348717 Msa0959010:CDS 35.0%
TTAATGTTGTAAGGGCTAGA+GGG - chr6_3:75348699-75348718 Msa0959010:CDS 35.0%
TAATGGTGAGAAGAATGCAT+GGG - chr6_3:75348751-75348770 Msa0959010:intron 35.0%
TTACAAATCTCCTTTGGTGA+AGG + chr6_3:75348803-75348822 None:intergenic 35.0%
TCACCAAAGGAGATTTGTAA+AGG - chr6_3:75348803-75348822 Msa0959010:intron 35.0%
AGACCTTTACAAATCTCCTT+TGG + chr6_3:75348809-75348828 None:intergenic 35.0%
TATCAATACTGGCGGAAATA+CGG - chr6_3:75348897-75348916 Msa0959010:intron 35.0%
! GGAAAGGAATTGTGTTGTTA+AGG - chr6_3:75349102-75349121 Msa0959010:intron 35.0%
AATGTTATACCTGATCCTGT+TGG + chr6_3:75349601-75349620 None:intergenic 35.0%
TTAGCCGATACTGATATGAA+CGG + chr6_3:75349664-75349683 None:intergenic 35.0%
ATGAATACTTGCCTGTGTTA+AGG + chr6_3:75349780-75349799 None:intergenic 35.0%
!! AAATGTTCTGATTTTCAGGC+TGG - chr6_3:75349927-75349946 Msa0959010:intron 35.0%
TTGTCAAATAGCAGCTATTG+CGG + chr6_3:75350130-75350149 None:intergenic 35.0%
TACTGTAGCATAGCGATATT+TGG + chr6_3:75350196-75350215 None:intergenic 35.0%
TAATCGTTGTAGCAATGAGA+AGG + chr6_3:75350360-75350379 None:intergenic 35.0%
AATTAGCAACAACAGCAATC+TGG + chr6_3:75350649-75350668 None:intergenic 35.0%
! AGATTGCTGTTGTTGCTAAT+TGG - chr6_3:75350648-75350667 Msa0959010:intron 35.0%
TTTCGAAGGACAAACAAACA+CGG - chr6_3:75350992-75351011 Msa0959010:intron 35.0%
! ATGTTTGGTTTCACATTTCG+AGG - chr6_3:75351021-75351040 Msa0959010:intron 35.0%
ATAGTAAATGTTCCGGAGAA+AGG - chr6_3:75351346-75351365 Msa0959010:CDS 35.0%
TGAATCCTGATACATTTGTC+TGG - chr6_3:75351503-75351522 Msa0959010:CDS 35.0%
CATTTCCAGACAAATGTATC+AGG + chr6_3:75351511-75351530 None:intergenic 35.0%
! AAAGGATTACCTCTCTGAAA+TGG + chr6_3:75351712-75351731 None:intergenic 35.0%
TATTCTACCGCTTCTAATGT+TGG + chr6_3:75351887-75351906 None:intergenic 35.0%
!! TCTTGATTTTGGCGTTCTTA+AGG - chr6_3:75352923-75352942 Msa0959010:intron 35.0%
!! GAAAATATTGTTTGGCTTGC+AGG - chr6_3:75353002-75353021 Msa0959010:intron 35.0%
!! TGTTTACCAAGAGCATGTTT+TGG + chr6_3:75353039-75353058 None:intergenic 35.0%
! AATGATAGCGAAGAAAGCAA+TGG - chr6_3:75353193-75353212 Msa0959010:CDS 35.0%
AAAGCAATGGCCAAAAATAC+TGG - chr6_3:75353206-75353225 Msa0959010:CDS 35.0%
AAAACTGTTTCCAATCTCTG+CGG - chr6_3:75353312-75353331 Msa0959010:CDS 35.0%
AATATCAAAACCGCAGAGAT+TGG + chr6_3:75353325-75353344 None:intergenic 35.0%
! GTTGTTGATGAAGAATCAGT+AGG - chr6_3:75353417-75353436 Msa0959010:CDS 35.0%
CTGAATCCTTTATCTTAGCT+AGG + chr6_3:75353506-75353525 None:intergenic 35.0%
AGCTAAGATAAAGGATTCAG+AGG - chr6_3:75353506-75353525 Msa0959010:CDS 35.0%
AGGGTTGACAGAATTGATTA+AGG - chr6_3:75353606-75353625 Msa0959010:CDS 35.0%
! GTGTTGCTACATGGATATAA+TGG + chr6_3:75353654-75353673 None:intergenic 35.0%
TGTAGCAACTGAGATTATCA+GGG + chr6_3:75353684-75353703 None:intergenic 35.0%
ATGTAGCAACTGAGATTATC+AGG + chr6_3:75353685-75353704 None:intergenic 35.0%
TGATAATCTCAGTTGCTACA+TGG - chr6_3:75353684-75353703 Msa0959010:CDS 35.0%
GTGTTCATCTGAATTCATGT+TGG - chr6_3:75353922-75353941 Msa0959010:CDS 35.0%
! CTGCGAATATGTGATTTTCA+GGG + chr6_3:75353964-75353983 None:intergenic 35.0%
TCAATAAAAGTGGTAGGTAG+GGG + chr6_3:75354034-75354053 None:intergenic 35.0%
CTCAATAAAAGTGGTAGGTA+GGG + chr6_3:75354035-75354054 None:intergenic 35.0%
ACTCAATAAAAGTGGTAGGT+AGG + chr6_3:75354036-75354055 None:intergenic 35.0%
!! TACCTACCACTTTTATTGAG+TGG - chr6_3:75354035-75354054 Msa0959010:CDS 35.0%
!! ACCTACCACTTTTATTGAGT+GGG - chr6_3:75354036-75354055 Msa0959010:CDS 35.0%
GTTGATCTAATTCAACGAGA+TGG + chr6_3:75354140-75354159 None:intergenic 35.0%
TGTTAAGTGCATTACAATCG+AGG + chr6_3:75354174-75354193 None:intergenic 35.0%
TGAATCAGAGTTACAGGATA+GGG - chr6_3:75354294-75354313 Msa0959010:five_prime_UTR 35.0%
TCAGTTCTTACTGAATAGGA+AGG - chr6_3:75354468-75354487 Msa0959010:five_prime_UTR 35.0%
AGTGTTTATCGGTGAAGAGA+TGG + chr6_3:75347363-75347382 None:intergenic 40.0%
CTTGAGATGAATCGAGACAT+GGG + chr6_3:75347873-75347892 None:intergenic 40.0%
TCTTGAGATGAATCGAGACA+TGG + chr6_3:75347874-75347893 None:intergenic 40.0%
AAGGAAATGACGTCATTTCG+CGG - chr6_3:75347906-75347925 Msa0959010:intron 40.0%
ACCTGAACCAAATTCCATGT+GGG + chr6_3:75347934-75347953 None:intergenic 40.0%
TACCTGAACCAAATTCCATG+TGG + chr6_3:75347935-75347954 None:intergenic 40.0%
CCGGTTTAATAAAGTGAACC+CGG + chr6_3:75347967-75347986 None:intergenic 40.0%
CCGGGTTCACTTTATTAAAC+CGG - chr6_3:75347964-75347983 Msa0959010:intron 40.0%
! AGTGCAAGAAAGGTACAAGT+GGG - chr6_3:75348076-75348095 Msa0959010:intron 40.0%
!! TTCATATCTTTGGAACACCG+TGG + chr6_3:75348167-75348186 None:intergenic 40.0%
CGTCATATGCAAAGTAATGG+TGG - chr6_3:75348203-75348222 Msa0959010:intron 40.0%
! CAAAGTAATGGTGGTGATTC+CGG - chr6_3:75348212-75348231 Msa0959010:intron 40.0%
! GGCGGAAATTTAGGTTCTAA+TGG - chr6_3:75348245-75348264 Msa0959010:intron 40.0%
!! TTAGGTTCTAATGGTGATGG+TGG - chr6_3:75348254-75348273 Msa0959010:intron 40.0%
CATCATGGAAGTGAGGATTT+AGG - chr6_3:75348479-75348498 Msa0959010:CDS 40.0%
!! ATTGGCTTGAAGTGTCAATG+TGG - chr6_3:75348522-75348541 Msa0959010:CDS 40.0%
! TTGGCTTGAAGTGTCAATGT+GGG - chr6_3:75348523-75348542 Msa0959010:CDS 40.0%
TTGAGAAATTACAATGGCGG+CGG - chr6_3:75348551-75348570 Msa0959010:intron 40.0%
!! AATGCTGGTGGTGGTAATAA+TGG - chr6_3:75348581-75348600 Msa0959010:intron 40.0%
!! ATGCTGGTGGTGGTAATAAT+GGG - chr6_3:75348582-75348601 Msa0959010:intron 40.0%
ACATTAATCCCAGGTGCAAA+AGG + chr6_3:75348686-75348705 None:intergenic 40.0%
CACCTGGGATTAATGTTGTA+AGG - chr6_3:75348690-75348709 Msa0959010:CDS 40.0%
GTAATGGTGAGAAGAATGCA+TGG - chr6_3:75348750-75348769 Msa0959010:CDS 40.0%
AATGGTGAGAAGAATGCATG+GGG - chr6_3:75348752-75348771 Msa0959010:intron 40.0%
GGAAGAACAACATACCTTCT+TGG + chr6_3:75348861-75348880 None:intergenic 40.0%
ATCAATACTGGCGGAAATAC+GGG - chr6_3:75348898-75348917 Msa0959010:intron 40.0%
AACTAACCCTTTCGGTAAAG+TGG + chr6_3:75349321-75349340 None:intergenic 40.0%
CATCAGTTGAAATTCAACCG+AGG + chr6_3:75349379-75349398 None:intergenic 40.0%
! GGTGGATTTCAATACTAGGT+CGG - chr6_3:75349495-75349514 Msa0959010:intron 40.0%
GTGGATTTCAATACTAGGTC+GGG - chr6_3:75349496-75349515 Msa0959010:intron 40.0%
TGCACCGTTCATATCAGTAT+CGG - chr6_3:75349657-75349676 Msa0959010:intron 40.0%
CTGTGTTAAGGTTGTAGCAT+CGG + chr6_3:75349768-75349787 None:intergenic 40.0%
!! GATTTTCAGGCTGGTTATGT+TGG - chr6_3:75349936-75349955 Msa0959010:intron 40.0%
AATATCAGCCGAGATGTTTC+TGG - chr6_3:75350565-75350584 Msa0959010:CDS 40.0%
!!! ACGAGCAAGGATGTTTTAGT+TGG - chr6_3:75350863-75350882 Msa0959010:intron 40.0%
CAAACACGGTAGTGTATGTT+TGG - chr6_3:75351006-75351025 Msa0959010:intron 40.0%
! TTTGGTTTCACATTTCGAGG+AGG - chr6_3:75351024-75351043 Msa0959010:intron 40.0%
!! GGAGGCAAATTTGTTTCTAG+AGG - chr6_3:75351042-75351061 Msa0959010:intron 40.0%
! CGTTTAGGATTCCGTAAGAA+TGG + chr6_3:75351305-75351324 None:intergenic 40.0%
!! TACACTCGTATTGGTTTCTG+CGG - chr6_3:75351782-75351801 Msa0959010:intron 40.0%
AATAGAAGAATCTTGCCGTC+TGG + chr6_3:75351842-75351861 None:intergenic 40.0%
AGACGGCAAGATTCTTCTAT+TGG - chr6_3:75351841-75351860 Msa0959010:intron 40.0%
GGTCTCATACCAGAGTTTAT+TGG - chr6_3:75352351-75352370 Msa0959010:CDS 40.0%
CTGACAAGCTAACTAAGATG+GGG + chr6_3:75352383-75352402 None:intergenic 40.0%
GCTGACAAGCTAACTAAGAT+GGG + chr6_3:75352384-75352403 None:intergenic 40.0%
CATAAGTTGCTCTTCGGTTA+AGG + chr6_3:75352406-75352425 None:intergenic 40.0%
TACCTGCATAAGTTGCTCTT+CGG + chr6_3:75352412-75352431 None:intergenic 40.0%
! ATATGCGACATTTTGCAAGC+AGG + chr6_3:75352681-75352700 None:intergenic 40.0%
! TGTCAGCGATTAGTTACGAA+CGG - chr6_3:75352731-75352750 Msa0959010:intron 40.0%
ACAGAACCAAAACATGCTCT+TGG - chr6_3:75353030-75353049 Msa0959010:intron 40.0%
TATTAAGGCTCTTAAACCCC+TGG + chr6_3:75353234-75353253 None:intergenic 40.0%
TTTAACCGATGCCATGTATG+AGG - chr6_3:75353262-75353281 Msa0959010:CDS 40.0%
CAATACCTCATACATGGCAT+CGG + chr6_3:75353270-75353289 None:intergenic 40.0%
CCAGATCAATACCTCATACA+TGG + chr6_3:75353276-75353295 None:intergenic 40.0%
!! CCATGTATGAGGTATTGATC+TGG - chr6_3:75353273-75353292 Msa0959010:CDS 40.0%
CTGTCTTAATATCGGGAATC+TGG + chr6_3:75353374-75353393 None:intergenic 40.0%
CAGATTCCCGATATTAAGAC+AGG - chr6_3:75353372-75353391 Msa0959010:CDS 40.0%
TCGCTTCCTGTCTTAATATC+GGG + chr6_3:75353381-75353400 None:intergenic 40.0%
GTCGCTTCCTGTCTTAATAT+CGG + chr6_3:75353382-75353401 None:intergenic 40.0%
! AGAATTTTTCCTCCACATCC+TGG + chr6_3:75353456-75353475 None:intergenic 40.0%
TGTGGAGGAAAAATTCTTCG+CGG - chr6_3:75353459-75353478 Msa0959010:CDS 40.0%
GCAGTACCTAGCTAAGATAA+AGG - chr6_3:75353497-75353516 Msa0959010:CDS 40.0%
TAAAAGGCCTATCCTCAATG+AGG - chr6_3:75353586-75353605 Msa0959010:CDS 40.0%
AAAAGGCCTATCCTCAATGA+GGG - chr6_3:75353587-75353606 Msa0959010:CDS 40.0%
AATTCTGTCAACCCTCATTG+AGG + chr6_3:75353601-75353620 None:intergenic 40.0%
CAGAATTGATTAAGGATCCG+AGG - chr6_3:75353614-75353633 Msa0959010:CDS 40.0%
GTAGCAACTGAGATTATCAG+GGG + chr6_3:75353683-75353702 None:intergenic 40.0%
TACATGGATCCATGTAGCTA+AGG - chr6_3:75353721-75353740 Msa0959010:CDS 40.0%
CATCTGAATTCATGTTGGGA+TGG - chr6_3:75353927-75353946 Msa0959010:CDS 40.0%
!! CGAATATGTGATTTTCAGGG+AGG + chr6_3:75353961-75353980 None:intergenic 40.0%
! GCTGCGAATATGTGATTTTC+AGG + chr6_3:75353965-75353984 None:intergenic 40.0%
TCCCACTCAATAAAAGTGGT+AGG + chr6_3:75354040-75354059 None:intergenic 40.0%
AGTAGCTGAATCAGAGTTAC+AGG - chr6_3:75354288-75354307 Msa0959010:five_prime_UTR 40.0%
CTGAATCAGAGTTACAGGAT+AGG - chr6_3:75354293-75354312 Msa0959010:five_prime_UTR 40.0%
GGTCTCAGTTCTTACTGAAT+AGG - chr6_3:75354464-75354483 Msa0959010:five_prime_UTR 40.0%
AGGAAATGACGTCATTTCGC+GGG - chr6_3:75347907-75347926 Msa0959010:intron 45.0%
! ACCCACATGGAATTTGGTTC+AGG - chr6_3:75347930-75347949 Msa0959010:intron 45.0%
! ATAAAGTGAACCCGGTTCGA+CGG + chr6_3:75347959-75347978 None:intergenic 45.0%
CTGAATCACATCATAGTCGC+CGG - chr6_3:75348017-75348036 Msa0959010:intron 45.0%
! GAGTGCAAGAAAGGTACAAG+TGG - chr6_3:75348075-75348094 Msa0959010:intron 45.0%
! GTGCAAGAAAGGTACAAGTG+GGG - chr6_3:75348077-75348096 Msa0959010:intron 45.0%
GTGATATGCATAACCCTACC+CGG - chr6_3:75348117-75348136 Msa0959010:intron 45.0%
ATAACCCTACCCGGAAAATC+CGG - chr6_3:75348126-75348145 Msa0959010:intron 45.0%
!! TCTAATGGTGATGGTGGTGA+TGG - chr6_3:75348260-75348279 Msa0959010:intron 45.0%
!! TGCTGGTGGTGGTAATAATG+GGG - chr6_3:75348583-75348602 Msa0959010:intron 45.0%
TTAATCCCAGGTGCAAAAGG+AGG + chr6_3:75348683-75348702 None:intergenic 45.0%
GCCCTTACAACATTAATCCC+AGG + chr6_3:75348695-75348714 None:intergenic 45.0%
CATGGGGAGGGTCTAATTTA+GGG - chr6_3:75348768-75348787 Msa0959010:intron 45.0%
GAAGGATTTGCCTTCACCAA+AGG - chr6_3:75348790-75348809 Msa0959010:intron 45.0%
!! ACCATGCCACTTTACCGAAA+GGG - chr6_3:75349312-75349331 Msa0959010:intron 45.0%
GGTGCAGATTCAGGAATTTC+AGG - chr6_3:75349517-75349536 Msa0959010:CDS 45.0%
!! GTTCTTTTGATGGGTCCAAC+AGG - chr6_3:75349583-75349602 Msa0959010:CDS 45.0%
!! GTAGCATCGGCAATGACAAA+CGG + chr6_3:75349755-75349774 None:intergenic 45.0%
CGATGCTACAACCTTAACAC+AGG - chr6_3:75349766-75349785 Msa0959010:intron 45.0%
GGTACGTGTATTGTTCTGCA+GGG - chr6_3:75349995-75350014 Msa0959010:CDS 45.0%
TAGCTAGTGCTAGAGAGTAG+CGG + chr6_3:75350102-75350121 None:intergenic 45.0%
CGTTGTAGCAATGAGAAGGA+AGG + chr6_3:75350356-75350375 None:intergenic 45.0%
AATGTTGCAGCAGCTCAACA+AGG - chr6_3:75350407-75350426 Msa0959010:intron 45.0%
! TTTTTCCTGGCTCCTTTCTC+CGG + chr6_3:75351361-75351380 None:intergenic 45.0%
AAGGAGCCAGGAAAAATCCA+CGG - chr6_3:75351365-75351384 Msa0959010:intron 45.0%
CTTCTAATGTTGGCACGAAC+TGG + chr6_3:75351877-75351896 None:intergenic 45.0%
GTTCGTGCCAACATTAGAAG+CGG - chr6_3:75351877-75351896 Msa0959010:intron 45.0%
!! AGCACTGACACTTCAGATTG+AGG - chr6_3:75352124-75352143 Msa0959010:intron 45.0%
GGGAATCGTCCAATAAACTC+TGG + chr6_3:75352363-75352382 None:intergenic 45.0%
GGCTGACAAGCTAACTAAGA+TGG + chr6_3:75352385-75352404 None:intergenic 45.0%
AACCGAAGAGCAACTTATGC+AGG - chr6_3:75352407-75352426 Msa0959010:intron 45.0%
!!! GAGCATGTTTTGGTTCTGTG+AGG + chr6_3:75353029-75353048 None:intergenic 45.0%
CGCGCAAAAACACACACAAA+CGG + chr6_3:75353100-75353119 None:intergenic 45.0%
GGAAAAATTCTTCGCGGAGA+TGG - chr6_3:75353465-75353484 Msa0959010:CDS 45.0%
TGTCAACCCTCATTGAGGAT+AGG + chr6_3:75353596-75353615 None:intergenic 45.0%
TGGATACACGTGTGAAACCT+CGG + chr6_3:75353634-75353653 None:intergenic 45.0%
TGCTACATGGATACACGAGT+TGG - chr6_3:75353697-75353716 Msa0959010:CDS 45.0%
! GGATACACGAGTTGGATACA+TGG - chr6_3:75353705-75353724 Msa0959010:CDS 45.0%
TAGTCCTCTCCTTAGCTACA+TGG + chr6_3:75353733-75353752 None:intergenic 45.0%
CAGATGAACACATCAGCGAA+AGG + chr6_3:75353913-75353932 None:intergenic 45.0%
AGACACCAAGTCATGCAACT+GGG + chr6_3:75354011-75354030 None:intergenic 45.0%
!! TATATATATATATATATATG+GGG - chr6_3:75352610-75352629 Msa0959010:CDS 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr6_3:75347409-75347428 None:intergenic 50.0%
GAGTTGAAATCGCCTGAACG+CGG + chr6_3:75347995-75348014 None:intergenic 50.0%
AATCACATCATAGTCGCCGG+AGG - chr6_3:75348020-75348039 Msa0959010:intron 50.0%
TAACCCTACCCGGAAAATCC+GGG - chr6_3:75348127-75348146 Msa0959010:intron 50.0%
! AGTAATGGTGGTGATTCCGG+CGG - chr6_3:75348215-75348234 Msa0959010:intron 50.0%
!! AATGGTGATGGTGGTGATGG+TGG - chr6_3:75348263-75348282 Msa0959010:intron 50.0%
GAGTGGTCATCATGGAAGTG+AGG - chr6_3:75348472-75348491 Msa0959010:CDS 50.0%
AGAAATTACAATGGCGGCGG+TGG - chr6_3:75348554-75348573 Msa0959010:intron 50.0%
TGGTGGCAATGGGAATGGTT+TGG - chr6_3:75348637-75348656 Msa0959010:intron 50.0%
TTGGCTGTACATACTCCTCC+AGG - chr6_3:75348656-75348675 Msa0959010:CDS 50.0%
GTGAGAAGAATGCATGGGGA+GGG - chr6_3:75348756-75348775 Msa0959010:intron 50.0%
GCATGGGGAGGGTCTAATTT+AGG - chr6_3:75348767-75348786 Msa0959010:intron 50.0%
GGGAGGGTCTAATTTAGGGA+AGG - chr6_3:75348772-75348791 Msa0959010:intron 50.0%
TGGACAAGGTAGAGCCAAGA+AGG - chr6_3:75348844-75348863 Msa0959010:CDS 50.0%
!! CACCATGCCACTTTACCGAA+AGG - chr6_3:75349311-75349330 Msa0959010:intron 50.0%
ACCCTTTCGGTAAAGTGGCA+TGG + chr6_3:75349316-75349335 None:intergenic 50.0%
! TTGATGGGTCCAACAGGATC+AGG - chr6_3:75349589-75349608 Msa0959010:intron 50.0%
CGGTACGTGTATTGTTCTGC+AGG - chr6_3:75349994-75350013 Msa0959010:CDS 50.0%
ATGTCGAACAGCGACTGTAG+TGG + chr6_3:75350219-75350238 None:intergenic 50.0%
!! AGCCGAGATGTTTCTGGTGA+GGG - chr6_3:75350571-75350590 Msa0959010:intron 50.0%
CACCCTCACCAGAAACATCT+CGG + chr6_3:75350576-75350595 None:intergenic 50.0%
AGGAGCCAGGAAAAATCCAC+GGG - chr6_3:75351366-75351385 Msa0959010:intron 50.0%
! ATCACCCCGTGGATTTTTCC+TGG + chr6_3:75351374-75351393 None:intergenic 50.0%
TCCACGGGGTGATAACATTC+AGG - chr6_3:75351381-75351400 Msa0959010:intron 50.0%
ACCTGAATGTTATCACCCCG+TGG + chr6_3:75351385-75351404 None:intergenic 50.0%
GTGCTGCATCTTGGAGGATT+TGG + chr6_3:75352109-75352128 None:intergenic 50.0%
! GAAGTGTCAGTGCTGCATCT+TGG + chr6_3:75352118-75352137 None:intergenic 50.0%
TGGCCAAAAATACTGGTGCC+AGG - chr6_3:75353213-75353232 Msa0959010:CDS 50.0%
! GGCCAAAAATACTGGTGCCA+GGG - chr6_3:75353214-75353233 Msa0959010:CDS 50.0%
! GCCAAAAATACTGGTGCCAG+GGG - chr6_3:75353215-75353234 Msa0959010:CDS 50.0%
! ACCCCTGGCACCAGTATTTT+TGG + chr6_3:75353219-75353238 None:intergenic 50.0%
CAACAACTACGGCGTCAATG+CGG + chr6_3:75353404-75353423 None:intergenic 50.0%
GTAGGATCACTAACAGCTCC+AGG - chr6_3:75353435-75353454 Msa0959010:CDS 50.0%
TCACTAACAGCTCCAGGATG+TGG - chr6_3:75353441-75353460 Msa0959010:CDS 50.0%
! GGGAGACATGTGTTGCTACA+TGG + chr6_3:75353663-75353682 None:intergenic 50.0%
GGATCCATGTAGCTAAGGAG+AGG - chr6_3:75353726-75353745 Msa0959010:CDS 50.0%
AGCGTGCCAATGGCATACTA+GGG + chr6_3:75353987-75354006 None:intergenic 50.0%
GAGACACCAAGTCATGCAAC+TGG + chr6_3:75354012-75354031 None:intergenic 50.0%
GGTTCAGGTAACCGTCGAAC+CGG - chr6_3:75347945-75347964 Msa0959010:intron 55.0%
GTTCAGGTAACCGTCGAACC+GGG - chr6_3:75347946-75347965 Msa0959010:intron 55.0%
! AAACCGGTTCAACCGCGTTC+AGG - chr6_3:75347980-75347999 Msa0959010:intron 55.0%
TATCACCATCCGACCCACCA+CGG + chr6_3:75348103-75348122 None:intergenic 55.0%
! TAGCCTCAGCCCGGATTTTC+CGG + chr6_3:75348139-75348158 None:intergenic 55.0%
! GTGGACAATTAGCCTCAGCC+CGG + chr6_3:75348148-75348167 None:intergenic 55.0%
GGGCTGAGGCTAATTGTCCA+CGG - chr6_3:75348147-75348166 Msa0959010:intron 55.0%
GGCGGAAACGGCGGAAATTT+AGG - chr6_3:75348236-75348255 Msa0959010:intron 55.0%
AATTACAATGGCGGCGGTGG+TGG - chr6_3:75348557-75348576 Msa0959010:intron 55.0%
ATTACAATGGCGGCGGTGGT+GGG - chr6_3:75348558-75348577 Msa0959010:intron 55.0%
! TGGTAATAATGGGGAGCCGC+CGG - chr6_3:75348592-75348611 Msa0959010:intron 55.0%
TTCCCATTGCCACCACCTAC+CGG + chr6_3:75348632-75348651 None:intergenic 55.0%
! GTAGGTGGTGGCAATGGGAA+TGG - chr6_3:75348632-75348651 Msa0959010:intron 55.0%
! CAGGTCCTCCTTTTGCACCT+GGG - chr6_3:75348675-75348694 Msa0959010:CDS 55.0%
GGTGAGAAGAATGCATGGGG+AGG - chr6_3:75348755-75348774 Msa0959010:intron 55.0%
ACTAGGTCGGGTGCAGATTC+AGG - chr6_3:75349508-75349527 Msa0959010:CDS 55.0%
!! CAGCCGAGATGTTTCTGGTG+AGG - chr6_3:75350570-75350589 Msa0959010:intron 55.0%
!! TTCTGGTGAGGGTGTTCAGC+AGG - chr6_3:75350582-75350601 Msa0959010:intron 55.0%
ATGTTCCGGAGAAAGGAGCC+AGG - chr6_3:75351353-75351372 Msa0959010:CDS 55.0%
GGAGCCAGGAAAAATCCACG+GGG - chr6_3:75351367-75351386 Msa0959010:intron 55.0%
GTGTCAGTGCTGCATCTTGG+AGG + chr6_3:75352115-75352134 None:intergenic 55.0%
!! TATATGTGTCGGTGCCGTGC+CGG + chr6_3:75352163-75352182 None:intergenic 55.0%
CTAACAGCTCCAGGATGTGG+AGG - chr6_3:75353444-75353463 Msa0959010:CDS 55.0%
TCTTCGCGGAGATGGTGCTT+TGG - chr6_3:75353473-75353492 Msa0959010:CDS 55.0%
TCGCAGCCCTAGTATGCCAT+TGG - chr6_3:75353978-75353997 Msa0959010:CDS 55.0%
CAGCGTGCCAATGGCATACT+AGG + chr6_3:75353988-75354007 None:intergenic 55.0%
GTCATTTCGCGGGACCCACA+TGG - chr6_3:75347917-75347936 Msa0959010:intron 60.0%
CGCGGGACCCACATGGAATT+TGG - chr6_3:75347924-75347943 Msa0959010:intron 60.0%
TCGCCTGAACGCGGTTGAAC+CGG + chr6_3:75347986-75348005 None:intergenic 60.0%
CACATCATAGTCGCCGGAGG+TGG - chr6_3:75348023-75348042 Msa0959010:intron 60.0%
CCGGCATTGTTTGCCACCTC+CGG + chr6_3:75348039-75348058 None:intergenic 60.0%
CCGGAGGTGGCAAACAATGC+CGG - chr6_3:75348036-75348055 Msa0959010:intron 60.0%
GAGGTGGCAAACAATGCCGG+CGG - chr6_3:75348039-75348058 Msa0959010:intron 60.0%
AGGTGGCAAACAATGCCGGC+GGG - chr6_3:75348040-75348059 Msa0959010:intron 60.0%
CGGTGGTCGGAGTGCAAGAA+AGG - chr6_3:75348066-75348085 Msa0959010:intron 60.0%
! GAAAGGTACAAGTGGGGCCG+TGG - chr6_3:75348083-75348102 Msa0959010:intron 60.0%
! CAGCCCGGATTTTCCGGGTA+GGG + chr6_3:75348133-75348152 None:intergenic 60.0%
! TCAGCCCGGATTTTCCGGGT+AGG + chr6_3:75348134-75348153 None:intergenic 60.0%
TACCCGGAAAATCCGGGCTG+AGG - chr6_3:75348133-75348152 Msa0959010:intron 60.0%
! AGCCTCAGCCCGGATTTTCC+GGG + chr6_3:75348138-75348157 None:intergenic 60.0%
! AATGGTGGTGATTCCGGCGG+CGG - chr6_3:75348218-75348237 Msa0959010:intron 60.0%
! CACCGGTAGGTGGTGGCAAT+GGG - chr6_3:75348627-75348646 Msa0959010:intron 60.0%
GGTGCAAAAGGAGGACCTGG+AGG + chr6_3:75348674-75348693 None:intergenic 60.0%
CCAGGTGCAAAAGGAGGACC+TGG + chr6_3:75348677-75348696 None:intergenic 60.0%
! CCAGGTCCTCCTTTTGCACC+TGG - chr6_3:75348674-75348693 Msa0959010:CDS 60.0%
TCACCATTACCACCACCGCC+CGG + chr6_3:75348740-75348759 None:intergenic 60.0%
TTGAGGCCATGCCCAGACAC+CGG - chr6_3:75352141-75352160 Msa0959010:intron 60.0%
CGCTGCCCAGTTGCATGACT+TGG - chr6_3:75354003-75354022 Msa0959010:CDS 60.0%
TGGCAAACAATGCCGGCGGG+TGG - chr6_3:75348043-75348062 Msa0959010:intron 65.0%
CAAACAATGCCGGCGGGTGG+CGG - chr6_3:75348046-75348065 Msa0959010:intron 65.0%
AGGTACAAGTGGGGCCGTGG+TGG - chr6_3:75348086-75348105 Msa0959010:intron 65.0%
GGTACAAGTGGGGCCGTGGT+GGG - chr6_3:75348087-75348106 Msa0959010:intron 65.0%
GGTGATTCCGGCGGCGGAAA+CGG - chr6_3:75348224-75348243 Msa0959010:intron 65.0%
ATTTCCGCCGTTTCCGCCGC+CGG + chr6_3:75348234-75348253 None:intergenic 65.0%
!! GGTGGTGGGAATGCTGGTGG+TGG - chr6_3:75348572-75348591 Msa0959010:intron 65.0%
! ACCGGTGGTGGCCATGTCTC+CGG + chr6_3:75348614-75348633 None:intergenic 65.0%
GAGACATGGCCACCACCGGT+AGG - chr6_3:75348614-75348633 Msa0959010:intron 65.0%
ACATGGCCACCACCGGTAGG+TGG - chr6_3:75348617-75348636 Msa0959010:intron 65.0%
TTGCCACCACCTACCGGTGG+TGG + chr6_3:75348626-75348645 None:intergenic 65.0%
CCATTGCCACCACCTACCGG+TGG + chr6_3:75348629-75348648 None:intergenic 65.0%
! CCACCGGTAGGTGGTGGCAA+TGG - chr6_3:75348626-75348645 Msa0959010:intron 65.0%
TGTAAGGGCTAGAGGGCCGC+AGG - chr6_3:75348706-75348725 Msa0959010:CDS 65.0%
GCAACTGGGCAGCGTGCCAA+TGG + chr6_3:75353997-75354016 None:intergenic 65.0%
!! CAAGTGGGGCCGTGGTGGGT+CGG - chr6_3:75348091-75348110 Msa0959010:intron 70.0%
GATTCCGGCGGCGGAAACGG+CGG - chr6_3:75348227-75348246 Msa0959010:intron 70.0%
!! GGCGGTGGTGGGAATGCTGG+TGG - chr6_3:75348569-75348588 Msa0959010:intron 70.0%
ATGGGGAGCCGCCGGAGACA+TGG - chr6_3:75348600-75348619 Msa0959010:intron 70.0%
! GGTGGTGGCCATGTCTCCGG+CGG + chr6_3:75348611-75348630 None:intergenic 70.0%
GCCGGAGACATGGCCACCAC+CGG - chr6_3:75348610-75348629 Msa0959010:intron 70.0%
TGGCCACCACCGGTAGGTGG+TGG - chr6_3:75348620-75348639 Msa0959010:intron 70.0%
AAGGGCTAGAGGGCCGCAGG+AGG - chr6_3:75348709-75348728 Msa0959010:CDS 70.0%
AGGGCTAGAGGGCCGCAGGA+GGG - chr6_3:75348710-75348729 Msa0959010:CDS 70.0%
! GGTCCGGGCGGTGGTGGTAA+TGG - chr6_3:75348734-75348753 Msa0959010:CDS 70.0%
GCCATGCCCAGACACCGGCA+CGG - chr6_3:75352146-75352165 Msa0959010:CDS 70.0%
!! TCGGTGCCGTGCCGGTGTCT+GGG + chr6_3:75352155-75352174 None:intergenic 70.0%
! ACAATGCCGGCGGGTGGCGG+TGG - chr6_3:75348049-75348068 Msa0959010:intron 75.0%
!! TGGGGCCGTGGTGGGTCGGA+TGG - chr6_3:75348095-75348114 Msa0959010:intron 75.0%
!! GGCGGCGGTGGTGGGAATGC+TGG - chr6_3:75348566-75348585 Msa0959010:intron 75.0%
GCTAGAGGGCCGCAGGAGGG+TGG - chr6_3:75348713-75348732 Msa0959010:CDS 75.0%
AGGGCCGCAGGAGGGTGGTC+CGG - chr6_3:75348718-75348737 Msa0959010:CDS 75.0%
! GCCGTGCCGGTGTCTGGGCA+TGG + chr6_3:75352150-75352169 None:intergenic 75.0%
!! GTCGGTGCCGTGCCGGTGTC+TGG + chr6_3:75352156-75352175 None:intergenic 75.0%
!! TGCCGGCGGGTGGCGGTGGT+CGG - chr6_3:75348053-75348072 Msa0959010:intron 80.0%
! CTCCGACCACCGCCACCCGC+CGG + chr6_3:75348058-75348077 None:intergenic 80.0%
! GGGCCGCAGGAGGGTGGTCC+GGG - chr6_3:75348719-75348738 Msa0959010:CDS 80.0%
! CCGCCCGGACCACCCTCCTG+CGG + chr6_3:75348725-75348744 None:intergenic 80.0%
! CCGCAGGAGGGTGGTCCGGG+CGG - chr6_3:75348722-75348741 Msa0959010:CDS 80.0%
! CAGGAGGGTGGTCCGGGCGG+TGG - chr6_3:75348725-75348744 Msa0959010:CDS 80.0%
! GAGGGTGGTCCGGGCGGTGG+TGG - chr6_3:75348728-75348747 Msa0959010:CDS 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 75347309 75354621 75347309 ID=Msa0959010;Name=Msa0959010
chr6_3 mRNA 75347309 75354621 75347309 ID=Msa0959010-mRNA-1;Parent=Msa0959010;Name=Msa0959010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=564|1|1|1|1|1|15|270|725
chr6_3 exon 75347309 75347647 75347309 ID=Msa0959010-mRNA-1:exon:13476;Parent=Msa0959010-mRNA-1
chr6_3 exon 75348403 75348555 75348403 ID=Msa0959010-mRNA-1:exon:13475;Parent=Msa0959010-mRNA-1
chr6_3 exon 75348647 75348769 75348647 ID=Msa0959010-mRNA-1:exon:13474;Parent=Msa0959010-mRNA-1
chr6_3 exon 75348844 75348906 75348844 ID=Msa0959010-mRNA-1:exon:13473;Parent=Msa0959010-mRNA-1
chr6_3 exon 75349502 75349606 75349502 ID=Msa0959010-mRNA-1:exon:13472;Parent=Msa0959010-mRNA-1
chr6_3 exon 75349988 75350087 75349988 ID=Msa0959010-mRNA-1:exon:13471;Parent=Msa0959010-mRNA-1
chr6_3 exon 75350209 75350279 75350209 ID=Msa0959010-mRNA-1:exon:13470;Parent=Msa0959010-mRNA-1
chr6_3 exon 75350528 75350584 75350528 ID=Msa0959010-mRNA-1:exon:13469;Parent=Msa0959010-mRNA-1
chr6_3 exon 75351300 75351377 75351300 ID=Msa0959010-mRNA-1:exon:13468;Parent=Msa0959010-mRNA-1
chr6_3 exon 75351461 75351535 75351461 ID=Msa0959010-mRNA-1:exon:13467;Parent=Msa0959010-mRNA-1
chr6_3 exon 75351935 75351985 75351935 ID=Msa0959010-mRNA-1:exon:13466;Parent=Msa0959010-mRNA-1
chr6_3 exon 75352143 75352222 75352143 ID=Msa0959010-mRNA-1:exon:13465;Parent=Msa0959010-mRNA-1
chr6_3 exon 75352320 75352417 75352320 ID=Msa0959010-mRNA-1:exon:13464;Parent=Msa0959010-mRNA-1
chr6_3 exon 75352597 75352658 75352597 ID=Msa0959010-mRNA-1:exon:13463;Parent=Msa0959010-mRNA-1
chr6_3 exon 75353065 75354621 75353065 ID=Msa0959010-mRNA-1:exon:13462;Parent=Msa0959010-mRNA-1
chr6_3 five_prime_UTR 75354058 75354621 75354058 ID=Msa0959010-mRNA-1:five_prime_utr;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75353065 75354057 75353065 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75352597 75352658 75352597 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75352320 75352417 75352320 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75352143 75352222 75352143 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75351935 75351985 75351935 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75351461 75351535 75351461 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75351300 75351377 75351300 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75350528 75350584 75350528 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75350209 75350279 75350209 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75349988 75350087 75349988 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75349502 75349606 75349502 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75348844 75348906 75348844 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75348647 75348769 75348647 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75348403 75348555 75348403 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 CDS 75347579 75347647 75347579 ID=Msa0959010-mRNA-1:cds;Parent=Msa0959010-mRNA-1
chr6_3 three_prime_UTR 75347309 75347578 75347309 ID=Msa0959010-mRNA-1:three_prime_utr;Parent=Msa0959010-mRNA-1
Gene Sequence

>Msa0959010

ATGTCTCGATTCATCTCAAGATGCAAAAAAATGAAGGAAATGACGTCATTTCGCGGGACCCACATGGAATTTGGTTCAGGTAACCGTCGAACCGGGTTCACTTTATTAAACCGGTTCAACCGCGTTCAGGCGATTTCAACTCATCTGAATCACATCATAGTCGCCGGAGGTGGCAAACAATGCCGGCGGGTGGCGGTGGTCGGAGTGCAAGAAAGGTACAAGTGGGGCCGTGGTGGGTCGGATGGTGATATGCATAACCCTACCCGGAAAATCCGGGCTGAGGCTAATTGTCCACGGTGTTCCAAAGATATGAATTTGTTTTTCTCCAATCGTCATATGCAAAGTAATGGTGGTGATTCCGGCGGCGGAAACGGCGGAAATTTAGGTTCTAATGGTGATGGTGGTGATGGTGGTTATCAAGCAGTGAATTTATGTCCAAATTGTAAAACAGCGTATCATTTTCGACCGTATAATACATCACCATTACAAGGTACATTTGTTGAAATTGGTAGAGTGAGTAATAATAATGGTGGTAATAGTAAAACTCAATTAACTAGAAGGTTTAAATATGGTATTGGAAAAGAAAGTAATAGTATTAAGAGTGGTCATCATGGAAGTGAGGATTTAGGTCTAAATGGTAGTGCTAGTAATTGGCTTGAAGTGTCAATGTGGGAAACTTTGAGAAATTACAATGGCGGCGGTGGTGGGAATGCTGGTGGTGGTAATAATGGGGAGCCGCCGGAGACATGGCCACCACCGGTAGGTGGTGGCAATGGGAATGGTTTGGCTGTACATACTCCTCCAGGTCCTCCTTTTGCACCTGGGATTAATGTTGTAAGGGCTAGAGGGCCGCAGGAGGGTGGTCCGGGCGGTGGTGGTAATGGTGAGAAGAATGCATGGGGAGGGTCTAATTTAGGGAAGGATTTGCCTTCACCAAAGGAGATTTGTAAAGGTCTTGATAAGTTTGTTATTGGACAAGGTAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAATCACTATAAAAGAATACACCATGCCACTTTACCGAAAGGGTCGGGTGCAGATTCAGGAATTTCAGGCATATTAGATGATGACGAAAATGTTGAGCTAGAAAAGAGTAACGTTCTTTTGATGGGTCCAACAGGATCAGGGAAGACATTACTTGCAAAAACATTAGCTCGATTTGTGAATGTTCCGTTTGTCATTGCCGATGCTACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATACTATATAAGCTACTTGCGGCAGCAGATTATAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGACGAAGTTGACAAGATTACTAAGAAGGCTGAGAGCTTAAATATCAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTCGAAGGAACTATAGTAAATGTTCCGGAGAAAGGAGCCAGGAAAAATCCACGGGGTGATAACATTCAGATAGACACAAAGAACATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGGCAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAACATTAGAAGCGGTAGAATAATCGATTCTGCTGTAGCATCATCTTTACTTGAATCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTTAGCTTGTCAGCCTTAACCGAAGAGCAACTTATGCAGGTCCTCACAGAACCAAAACATGCTCTTGGTAAACAGTACAAGAAATTAGTCGGCATGAATGAAGTAAAGCTACACTTCACAGAGAAAGCTCTGAGAATGATAGCGAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCTTAATAGAAAACATTTTAACCGATGCCATGTATGAGATTCCCGATATTAAGACAGGAAGCGACCGCATTGACGCCGTAGTTGTTGATGAAGAATCAGTAGGATCACTAACAGCTCCAGGATGTGGAGGAAAAATTCTTCGCGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATAAAGGATTCAGAGGATGTAGTAGCTGAATCAGAGTTACAGGATAGGGATTCAGATACTTCATCAAGAGCCATGAGCATGTAA

Protein sequence

>Msa0959010

MSRFISRCKKMKEMTSFRGTHMEFGSGNRRTGFTLLNRFNRVQAISTHLNHIIVAGGGKQCRRVAVVGVQERYKWGRGGSDGDMHNPTRKIRAEANCPRCSKDMNLFFSNRHMQSNGGDSGGGNGGNLGSNGDGGDGGYQAVNLCPNCKTAYHFRPYNTSPLQGTFVEIGRVSNNNGGNSKTQLTRRFKYGIGKESNSIKSGHHGSEDLGLNGSASNWLEVSMWETLRNYNGGGGGNAGGGNNGEPPETWPPPVGGGNGNGLAVHTPPGPPFAPGINVVRARGPQEGGPGGGGNGEKNAWGGSNLGKDLPSPKEICKGLDKFVIGQGRAKKVLSVAVYNHYKRIHHATLPKGSGADSGISGILDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKNPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANIRSGRIIDSAVASSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQVLTEPKHALGKQYKKLVGMNEVKLHFTEKALRMIAKKAMAKNTGARGLRALIENILTDAMYEIPDIKTGSDRIDAVVVDEESVGSLTAPGCGGKILRGDGALEQYLAKIKDSEDVVAESELQDRDSDTSSRAMSM*