AlfalfaGEDB | Msa0248810

M. sativa cultivar zhongmu-4 / Msa0248810

KEGG: K03006
GO: -
PFAM: PF07983.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0248810	XP_003595584.1	94.498	309	14	2	8	315	22	328	8.84e-141	410

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0248810	sp\|O65399\|E131_ARATH	49.000	100	49	2	145	242	381	480	4.34e-21	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0248810	G7IIX1	94.498	309	14	2	8	315	22	328	4.22e-141	410

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0150590	Msa0248810	0.803105	4.086683e-49	-8.615850e-47
Msa0248810	Msa0325720	0.897665	1.127538e-76	-8.615850e-47
Msa0248810	Msa0427820	0.813297	2.749212e-51	-8.615850e-47
Msa0248810	Msa0474060	0.809599	1.747392e-50	-8.615850e-47
Msa0248810	Msa0518680	0.800164	1.638594e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0248810	MtrunA17_Chr2g0304061	94.498	309	14	2	8	315	22	328	8.13e-145	410
Msa0248810	MtrunA17_Chr3g0096451	51.799	139	60	3	91	227	62	195	4.60e-35	127
Msa0248810	MtrunA17_Chr5g0443331	49.655	145	47	4	95	234	75	198	5.28e-33	122
Msa0248810	MtrunA17_Chr7g0271411	61.905	84	31	1	145	227	160	243	2.38e-31	119
Msa0248810	MtrunA17_Chr1g0193131	64.634	82	29	0	142	223	417	498	6.36e-31	122
Msa0248810	MtrunA17_Chr8g0378361	48.031	127	61	2	138	263	23	145	2.34e-29	110
Msa0248810	MtrunA17_Chr8g0381081	56.322	87	36	2	145	229	57	143	1.31e-26	103
Msa0248810	MtrunA17_Chr8g0380231	60.000	80	28	2	154	232	26	102	6.49e-26	99.0
Msa0248810	MtrunA17_Chr5g0447651	56.471	85	35	2	145	227	30	114	6.00e-25	97.1
Msa0248810	MtrunA17_Chr4g0075031	54.348	92	40	2	145	234	382	473	1.20e-24	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0248810	AT2G30933.1	58.947	95	38	1	141	234	78	172	2.55e-34	125
Msa0248810	AT1G09460.1	59.140	93	37	1	142	234	134	225	2.13e-30	117
Msa0248810	AT2G30933.2	60.976	82	31	1	141	221	78	159	3.43e-30	112
Msa0248810	AT2G30933.3	60.976	82	31	1	141	221	78	159	3.43e-30	112
Msa0248810	AT5G35740.1	52.809	89	37	4	144	228	29	116	1.14e-24	96.7
Msa0248810	AT4G13600.1	43.411	129	60	3	142	257	58	186	3.38e-24	98.6
Msa0248810	AT4G05430.1	47.312	93	47	2	142	232	20	112	2.42e-23	94.0
Msa0248810	AT4G05430.3	47.312	93	47	2	142	232	45	137	3.22e-23	94.4
Msa0248810	AT4G26830.2	47.115	104	53	2	126	227	352	455	7.39e-23	98.6
Msa0248810	AT4G26830.1	47.115	104	53	2	126	227	348	451	9.10e-23	98.6

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Find 116 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTCACCTTGTTGTTT+TGG	0.240571	2_2:+33582015	None:intergenic
AACCCTACAACACCAGGAAC+AGG	0.450399	2_2:-33582860	Msa0248810:CDS
AAGTTGATGTAGCTATATTG+GGG	0.613710	2_2:+33581756	None:intergenic
AATACACAACTTGTAGGTGC+AGG	0.573202	2_2:+33582353	None:intergenic
AATGTGACTCCCACAACACC+AGG	0.569381	2_2:-33582593	Msa0248810:CDS
ACAATGCCTGATGCTGATGG+AGG	0.696819	2_2:-33581815	Msa0248810:CDS
ACACCAGGAACAGGATCATC+TGG	0.480901	2_2:-33582578	Msa0248810:CDS
ACAGGATCATCTGGTGGTGG+TGG	0.506368	2_2:-33582569	Msa0248810:CDS
ACCCCTCCAAGCCCAGACAC+AGG	0.555256	2_2:-33582773	Msa0248810:CDS
ACTCCCACAACACCAGGAAC+AGG	0.492125	2_2:-33582587	Msa0248810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTAGTTGCAAGAATTCATA+TGG	+	chr2_2:33582734-33582753	None:intergenic	30.0%
TAAATGGATACATTGATGCA+CGG	+	chr2_2:33582778-33582797	None:intergenic	30.0%
CTTAGTTGCAAGAATTCATA+TGG	+	chr2_2:33582734-33582753	None:intergenic	30.0%
TAAATGGATACATTGATGCA+CGG	+	chr2_2:33582778-33582797	None:intergenic	30.0%
ATGACATGTTCTACAGGTTT+AGG	-	chr2_2:33581311-33581330	Msa0248810:three_prime_UTR	35.0%
GTTGGGTTTATAGTAGGATA+AGG	+	chr2_2:33581440-33581459	None:intergenic	35.0%
GGATTTGAGTATGGATTTGT+TGG	+	chr2_2:33581530-33581549	None:intergenic	35.0%
GTTTGAATATGGACTTGTAG+AGG	+	chr2_2:33581558-33581577	None:intergenic	35.0%
TTGTTGGAGTTGTTGTAGTT+GGG	+	chr2_2:33581649-33581668	None:intergenic	35.0%
TTGGATTATGCTTGTGGATA+TGG	-	chr2_2:33581791-33581810	Msa0248810:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	33581311	33582978	33581311	ID=Msa0248810;Name=Msa0248810
chr2_2	mRNA	33581311	33582978	33581311	ID=Msa0248810-mRNA-1;Parent=Msa0248810;Name=Msa0248810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|1\|0.66\|1\|1\|1\|3\|377\|315
chr2_2	exon	33581311	33581934	33581311	ID=Msa0248810-mRNA-1:exon:11245;Parent=Msa0248810-mRNA-1
chr2_2	exon	33582025	33582064	33582025	ID=Msa0248810-mRNA-1:exon:11244;Parent=Msa0248810-mRNA-1
chr2_2	exon	33582318	33582978	33582318	ID=Msa0248810-mRNA-1:exon:11243;Parent=Msa0248810-mRNA-1
chr2_2	CDS	33582318	33582978	33582318	ID=Msa0248810-mRNA-1:cds;Parent=Msa0248810-mRNA-1
chr2_2	CDS	33582025	33582064	33582025	ID=Msa0248810-mRNA-1:cds;Parent=Msa0248810-mRNA-1
chr2_2	CDS	33581688	33581934	33581688	ID=Msa0248810-mRNA-1:cds;Parent=Msa0248810-mRNA-1
chr2_2	three_prime_UTR	33581311	33581687	33581311	ID=Msa0248810-mRNA-1:three_prime_utr;Parent=Msa0248810-mRNA-1

Gene Sequence

>Msa0248810

ATGACATGTTCTACAGGTTTAGGTACAGCCATAAGATTAAGAGAAGATTCATCATATGAATTTAGTACAACTCAATCAGATTCAATTCCTATTGTGAACCCTACAACACCAGGAACAGGAGGAAATCCTTATCCTACTATAAACCCAACATCTCCTCAACCACCTGACACAAGTACTGGACAAACCCCTCCAAGCCCAGACACAGGCACAACAAGCCCAACAAATCCATACTCAAATCCACCAACCTCTACAAGTCCATATTCAAACCCACCAGCTTCTACAAATCCATACTCAAACCCACCAAGTTCAACAAATCCATACTCAAACCCAACAAGCCCAACTACAACAACTCCAACAAGCCCAAATGTGACTCCCACAACACCAGGAACAGGATCATCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTCAGTGGTGTGTTGCAAGTGAATCAGCTGCAGAGACTACTTTAAAGGTAGCTTTGGATTATGCTTGTGGATATGGTGCAGATTGTTCACAACTTCAACAAGGAGGAGCTTGTTATGACCCAAATACTTTGAAAGATCATGCTTCTTATGCATTCAATGATTACTATCAAAAGAATCCTGCACCTACAAGTTGTGTATTTGGAGGAGTAGCATCACTCACAAGCAAAGATCCAAGTCATGGGAATTGCCACTTCTCATCCTCCAAAACAACAAGCATGAGTCCACCAACATTTGTAAGCCCACCAACTACTATGACTCCACCTAGTCCTACTACTATGACCCCACCAAGCAGTATGACACCACCAAGCATGACAATGCCTGATGCTGATGGAGGATCATCATCAGTCTATGGTTCACCACCAGGAGGAAGCCCCAATATAGCTACATCAACTTCTTATTCCATTCTGCTACTACTCACTACAAGCCTCTATGCTACACTTCATGTGCAAAATTACGTCTAG

Protein sequence

>Msa0248810

MTCSTGLGTAIRLREDSSYEFSTTQSDSIPIVNPTTPGTGGNPYPTINPTSPQPPDTSTGQTPPSPDTGTTSPTNPYSNPPTSTSPYSNPPASTNPYSNPPSSTNPYSNPTSPTTTTPTSPNVTPTTPGTGSSGGGGGGGGGGQWCVASESAAETTLKVALDYACGYGADCSQLQQGGACYDPNTLKDHASYAFNDYYQKNPAPTSCVFGGVASLTSKDPSHGNCHFSSSKTTSMSPPTFVSPPTTMTPPSPTTMTPPSSMTPPSMTMPDADGGSSSVYGSPPGGSPNIATSTSYSILLLLTTSLYATLHVQNYV*