AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427820 MtrunA17_Chr3g0130741 96.413 446 10 2 1 441 1 445 0.0 875
Msa0427820 MtrunA17_Chr8g0384731 72.093 430 98 4 18 441 22 435 0.0 646
Msa0427820 MtrunA17_Chr1g0159791 55.026 378 159 5 67 435 39 414 7.26e-142 412
Msa0427820 MtrunA17_Chr4g0010951 45.232 409 179 9 70 436 46 451 1.60e-114 343
Msa0427820 MtrunA17_Chr6g0484731 44.474 380 187 10 70 430 176 550 2.50e-96 300
Msa0427820 MtrunA17_Chr3g0078321 37.500 400 216 15 54 434 32 416 7.05e-75 240
Msa0427820 MtrunA17_Chr4g0010941 44.492 236 94 4 234 434 2 235 1.04e-63 205
Msa0427820 MtrunA17_Chr1g0179751 25.845 414 252 13 65 438 84 482 1.62e-34 135
Msa0427820 MtrunA17_Chr1g0189381 27.727 440 260 17 39 440 20 439 1.03e-33 132
Msa0427820 MtrunA17_Chr7g0265331 26.277 411 234 17 74 438 68 455 2.25e-31 125
Msa0427820 MtrunA17_Chr7g0249451 26.406 409 247 17 65 438 49 438 3.57e-31 124
Msa0427820 MtrunA17_Chr2g0320621 26.933 401 244 16 65 431 53 438 1.07e-29 120
Msa0427820 MtrunA17_Chr4g0027681 25.127 394 243 15 72 431 62 437 5.57e-29 119
Msa0427820 MtrunA17_Chr7g0221681 27.252 433 253 19 46 438 31 441 1.33e-28 117
Msa0427820 MtrunA17_Chr4g0053721 27.251 411 245 18 51 430 43 430 1.90e-28 118
Msa0427820 MtrunA17_Chr5g0425141 27.568 370 213 15 90 430 106 449 1.12e-25 109
Msa0427820 MtrunA17_Chr8g0352671 24.250 400 245 13 64 433 68 439 3.48e-25 107
Msa0427820 MtrunA17_Chr5g0401601 26.203 374 233 15 84 433 87 441 3.73e-25 108
Msa0427820 MtrunA17_Chr8g0386441 24.873 394 246 13 64 433 65 432 3.52e-24 104
Msa0427820 MtrunA17_Chr5g0435871 25.250 400 239 16 64 433 68 437 3.79e-24 103
Msa0427820 MtrunA17_Chr5g0435971 25.250 400 239 16 64 433 65 434 1.29e-23 102
Msa0427820 MtrunA17_Chr8g0371371 29.024 379 213 19 90 437 117 470 2.18e-23 102
Msa0427820 MtrunA17_Chr2g0310831 25.191 393 239 16 65 432 80 442 5.71e-23 100
Msa0427820 MtrunA17_Chr5g0419291 25.132 378 224 16 84 433 85 431 6.37e-23 100
Msa0427820 MtrunA17_Chr3g0130931 25.564 399 223 22 70 433 92 451 9.26e-23 100
Msa0427820 MtrunA17_Chr8g0352661 25.700 393 231 16 71 433 78 439 1.42e-22 99.8
Msa0427820 MtrunA17_Chr3g0124421 25.575 391 219 15 90 441 104 461 1.63e-21 97.1
Msa0427820 MtrunA17_Chr2g0333991 24.934 381 236 13 75 429 78 434 1.65e-21 96.3
Msa0427820 MtrunA17_Chr5g0395911 26.546 388 217 17 79 432 62 415 6.70e-21 94.4
Msa0427820 MtrunA17_Chr2g0311451 24.479 384 240 13 75 432 78 437 6.73e-21 94.7
Msa0427820 MtrunA17_Chr8g0371351 26.790 377 223 16 83 430 97 449 1.57e-19 90.9
Msa0427820 MtrunA17_Chr2g0310801 23.969 388 243 15 67 432 78 435 1.62e-19 90.5
Msa0427820 MtrunA17_Chr2g0312941 27.114 402 206 22 86 432 88 457 9.16e-19 88.2
Msa0427820 MtrunA17_Chr7g0275731 27.128 376 216 17 84 431 140 485 1.44e-18 87.8
Msa0427820 MtrunA17_Chr4g0023351 31.633 196 110 10 57 244 37 216 2.82e-17 82.0
Msa0427820 MtrunA17_Chr2g0308001 23.227 409 253 15 67 440 36 418 2.96e-16 80.5
Msa0427820 MtrunA17_Chr4g0001991 26.133 375 223 20 87 433 172 520 3.55e-16 80.5
Msa0427820 MtrunA17_Chr5g0442921 25.397 441 261 16 33 433 144 556 5.15e-16 80.1
Msa0427820 MtrunA17_Chr6g0487471 27.018 285 165 9 84 337 85 357 1.82e-15 78.2
Msa0427820 MtrunA17_Chr8g0390761 30.357 168 98 6 88 251 119 271 3.28e-15 77.4
Msa0427820 MtrunA17_Chr1g0212321 31.757 148 85 6 84 227 145 280 1.27e-14 75.9
Msa0427820 MtrunA17_Chr5g0395871 25.266 376 221 18 84 430 80 424 1.89e-14 75.1
Msa0427820 MtrunA17_Chr2g0291201 23.936 376 234 15 84 431 101 452 6.14e-14 73.6
Msa0427820 MtrunA17_Chr3g0095891 23.904 456 256 21 30 433 45 461 6.97e-14 73.6
Msa0427820 MtrunA17_Chr6g0457401 26.384 307 168 13 85 354 91 376 7.16e-14 73.2
Msa0427820 MtrunA17_Chr6g0484901 23.901 364 221 17 90 430 161 491 1.42e-13 72.4
Msa0427820 MtrunA17_Chr1g0179091 23.174 397 224 16 63 432 26 368 4.12e-13 70.5
Msa0427820 MtrunA17_Chr5g0434441 24.352 386 229 13 88 435 71 431 3.78e-12 67.8
Msa0427820 MtrunA17_Chr1g0210201 25.000 372 220 20 84 430 130 467 3.98e-12 67.8
Msa0427820 MtrunA17_Chr3g0099901 23.467 375 243 14 78 431 135 486 7.95e-12 67.0
Msa0427820 MtrunA17_Chr7g0239001 22.646 393 231 18 88 433 62 428 3.33e-11 65.1
Msa0427820 MtrunA17_Chr3g0099891 24.734 376 233 18 76 430 108 454 3.89e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427820 AT4G33490.2 64.948 388 128 4 62 441 35 422 0.0 533
Msa0427820 AT4G33490.1 67.045 352 108 4 62 405 32 383 2.19e-174 494
Msa0427820 AT1G44130.1 51.596 376 174 5 68 436 31 405 1.33e-141 411
Msa0427820 AT1G77480.2 47.368 399 200 5 48 437 29 426 2.87e-131 385
Msa0427820 AT1G77480.1 47.222 396 199 5 48 434 29 423 1.66e-129 382
Msa0427820 AT1G49050.1 44.332 397 191 13 70 441 187 578 2.78e-94 296
Msa0427820 AT1G49050.2 43.045 381 189 12 85 441 29 405 6.01e-88 274
Msa0427820 AT1G49050.3 43.173 271 131 8 70 319 187 455 8.74e-59 199
Msa0427820 AT1G65240.1 28.784 403 235 14 67 438 53 434 1.02e-37 143
Msa0427820 AT2G36670.2 26.585 410 239 15 69 441 81 465 4.72e-34 134
Msa0427820 AT5G22850.1 26.382 398 240 15 69 431 62 441 9.01e-34 132
Msa0427820 AT5G36260.1 27.604 384 233 12 83 438 75 441 1.29e-32 129
Msa0427820 AT2G36670.1 26.265 415 239 16 69 441 81 470 7.40e-32 127
Msa0427820 AT3G02740.1 28.822 399 236 16 70 438 67 447 1.45e-31 126
Msa0427820 AT5G43100.2 27.568 370 225 16 84 433 74 420 8.28e-31 124
Msa0427820 AT2G36670.4 25.823 395 227 14 85 441 33 399 1.36e-30 123
Msa0427820 AT2G36670.3 25.823 395 227 14 85 441 33 399 1.36e-30 123
Msa0427820 AT1G05840.1 26.972 393 225 13 84 438 78 446 2.16e-30 123
Msa0427820 AT3G02740.2 28.682 387 230 15 80 438 4 372 3.26e-30 121
Msa0427820 AT5G43100.1 27.568 370 225 16 84 433 74 420 4.05e-30 123
Msa0427820 AT1G08210.1 28.675 415 230 17 69 439 65 457 1.37e-28 118
Msa0427820 AT1G08210.4 28.675 415 230 17 69 439 99 491 2.03e-28 117
Msa0427820 AT1G08210.3 28.675 415 230 17 69 439 113 505 2.92e-28 117
Msa0427820 AT3G50050.1 27.027 407 254 16 50 433 53 439 5.49e-27 114
Msa0427820 AT2G17760.1 29.708 377 215 19 80 430 97 449 3.62e-26 111
Msa0427820 AT1G08210.2 27.335 439 232 18 69 439 65 484 4.46e-24 105
Msa0427820 AT3G25700.1 26.667 390 237 17 76 430 74 449 4.73e-22 98.6
Msa0427820 AT5G10080.1 26.501 483 265 21 6 432 7 455 1.73e-21 97.4
Msa0427820 AT4G35880.1 26.702 382 225 15 83 436 103 457 2.33e-21 97.1
Msa0427820 AT5G10770.1 26.203 374 233 15 78 431 124 474 7.27e-21 95.1
Msa0427820 AT3G51330.1 27.027 370 234 16 83 430 98 453 2.11e-20 94.0
Msa0427820 AT3G51330.3 26.954 371 235 16 83 431 98 454 2.39e-20 93.6
Msa0427820 AT3G51350.1 27.224 371 226 16 85 430 101 452 3.54e-20 93.6
Msa0427820 AT2G28010.1 28.435 313 166 14 10 303 7 280 1.97e-19 90.1
Msa0427820 AT1G64830.1 29.195 298 172 15 84 354 84 369 1.16e-16 82.0
Msa0427820 AT3G51340.2 26.486 370 229 16 83 430 99 447 6.16e-16 80.5
Msa0427820 AT4G35880.2 26.163 344 204 14 83 398 103 424 9.70e-16 79.3
Msa0427820 AT3G18490.1 23.958 384 228 20 76 430 152 500 8.89e-15 76.6
Msa0427820 AT4G12920.1 25.490 255 167 11 86 328 58 301 1.48e-14 75.5
Msa0427820 AT3G51340.1 25.789 380 231 17 83 430 99 459 1.91e-14 75.9
Msa0427820 AT5G37540.1 24.163 418 264 15 51 434 44 442 2.84e-14 75.1
Msa0427820 AT2G28040.2 24.524 420 247 20 33 431 12 382 4.47e-14 73.9
Msa0427820 AT2G28040.1 24.372 398 230 20 65 433 38 393 2.45e-13 71.6
Msa0427820 AT4G30030.1 33.113 151 90 7 82 229 75 217 2.51e-13 72.0
Msa0427820 AT2G23945.1 27.046 281 166 12 85 340 95 361 4.64e-13 71.2
Msa0427820 AT1G25510.1 23.360 381 231 16 76 430 138 483 2.33e-12 69.3
Msa0427820 AT5G10760.1 26.357 258 152 10 84 320 130 370 6.46e-12 67.8
Msa0427820 AT3G20015.1 31.771 192 110 9 84 268 129 306 9.60e-12 67.0
Msa0427820 AT2G42980.1 22.193 383 246 14 84 430 158 524 5.22e-11 65.1
Msa0427820 AT5G02190.1 23.529 391 216 23 95 431 82 443 5.74e-11 64.7
Msa0427820 AT3G25700.2 32.812 128 75 6 84 201 82 208 7.46e-11 63.9
Msa0427820 AT2G35615.1 21.594 389 237 13 84 431 83 444 9.72e-11 63.9

Find 130 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGACATCTTTGGATTT+TGG 0.149011 3_2:+78492629 None:intergenic
TAATCAAATGCTGACATCTT+TGG 0.242452 3_2:+78492622 None:intergenic
CTTATCAAGCACTAATTTCT+TGG 0.254030 3_2:-78493494 Msa0427820:CDS
ACTTTATAGAACACGATATA+TGG 0.292279 3_2:-78492531 Msa0427820:three_prime_UTR
AATCATGAAGTCAGGGAAAT+TGG 0.293581 3_2:-78496051 Msa0427820:exon
GCTTTCGATCTTCCACTTCC+TGG 0.304667 3_2:+78493126 None:intergenic
GGCGGAGGATACATCTTCTT+TGG 0.305148 3_2:-78493769 Msa0427820:CDS
AGAGGGAGAGTTTGGTCTTC+AGG 0.323198 3_2:+78493225 None:intergenic
AGACACCACATCCGCTTTAC+CGG 0.336790 3_2:-78494776 Msa0427820:CDS
TGGTTCATCGGTCGTGTTCC+CGG 0.337316 3_2:-78495844 Msa0427820:CDS
GTGTCAATATCAAGAAAATA+TGG 0.341260 3_2:+78495037 None:intergenic
GACAATGAAAAGCAGTTGAT+AGG 0.341276 3_2:-78492680 Msa0427820:CDS
CTTCAGGAGGGATTTCGAAT+TGG 0.346518 3_2:+78493103 None:intergenic
TTCTTGGAGGGAAGAGGACT+GGG 0.346941 3_2:-78493578 Msa0427820:CDS
CGCCATTCCTACCTCCGATT+AGG 0.353194 3_2:+78492881 None:intergenic
TAGTTTGATTGCACGGCATT+GGG 0.360844 3_2:-78492362 Msa0427820:three_prime_UTR
TTGGGGATTTCATTTAGAAT+TGG 0.362523 3_2:-78492344 Msa0427820:three_prime_UTR
GGAGGGAAGAGGACTGGGTT+TGG 0.363106 3_2:-78493573 Msa0427820:CDS
ACCAACATAGAGGGAGAGTT+TGG 0.364966 3_2:+78493217 None:intergenic
TCTACTTGTTTAGCTTGGTT+TGG 0.365632 3_2:-78495996 Msa0427820:CDS
TCGGTCGTGTTCCCGGTTCA+TGG 0.368069 3_2:-78495837 Msa0427820:CDS
TCTTCCTACCACCCCGTAGA+TGG 0.373727 3_2:-78493889 Msa0427820:CDS
ACTTCATATACACTTCTAAA+AGG 0.375337 3_2:+78493183 None:intergenic
TTCAGGAGGGATTTCGAATT+GGG 0.375689 3_2:+78493104 None:intergenic
GGATAAACATTTCCATGAAC+CGG 0.391556 3_2:+78495825 None:intergenic
TAACATGATATGTTGTTATA+TGG 0.393852 3_2:+78492383 None:intergenic
CCTGGGAAGCTAAGTGCAAT+AGG 0.403734 3_2:+78493144 None:intergenic
GCCTTGTTCGCGTTGCTCTC+AGG 0.405030 3_2:-78494981 Msa0427820:intron
TTATCAAGCACTAATTTCTT+GGG 0.408330 3_2:-78493493 Msa0427820:intron
GATATAATCAGATATGCTTC+AGG 0.410114 3_2:+78493087 None:intergenic
ATGGAATGCTTGGCCTTGGC+AGG 0.412501 3_2:-78493870 Msa0427820:CDS
CTCAGCAAACATTACTCAGC+AGG 0.412530 3_2:-78493615 Msa0427820:intron
CATGGAAATGTTTATCCTGT+TGG 0.413700 3_2:-78495819 Msa0427820:CDS
ATGGAAATGTTTATCCTGTT+GGG 0.418408 3_2:-78495818 Msa0427820:intron
GTTCCTCTACTTGTTTAGCT+TGG 0.418515 3_2:-78496001 Msa0427820:CDS
CATCACATTGAAGCCATGTT+AGG 0.420882 3_2:+78495005 None:intergenic
CTTAAAGTTCGTATGGCACT+TGG 0.422527 3_2:-78494573 Msa0427820:CDS
AATAGAGAAATCATGAAGTC+AGG 0.426807 3_2:-78496059 Msa0427820:exon
ATTTCAAGTTCAAGTGCAAA+TGG 0.428003 3_2:-78495948 Msa0427820:CDS
CTTTCGATCTTCCACTTCCT+GGG 0.434979 3_2:+78493127 None:intergenic
TATGTTCTCAACTTTACAAA+TGG 0.435278 3_2:-78494603 Msa0427820:CDS
ACGGGGTGGTAGGAAGAATC+TGG 0.438753 3_2:+78493895 None:intergenic
TGTTTATGATTCTTCTCGAT+TGG 0.447111 3_2:-78493743 Msa0427820:CDS
GTTCTTGGAGGGAAGAGGAC+TGG 0.447212 3_2:-78493579 Msa0427820:CDS
TTAGTTTGATTGCACGGCAT+TGG 0.449305 3_2:-78492363 Msa0427820:three_prime_UTR
GATATCACAGCTGAATGGTC+AGG 0.452709 3_2:-78493833 Msa0427820:CDS
ATGATTCTTCTCGATTGGCT+TGG 0.455289 3_2:-78493738 Msa0427820:CDS
CCTATTGCACTTAGCTTCCC+AGG 0.459180 3_2:-78493144 Msa0427820:CDS
ATAATGTGACTATCAACATT+GGG 0.460427 3_2:-78495072 Msa0427820:CDS
AACATGGGAAATGTTTGCTT+GGG 0.462552 3_2:-78492943 Msa0427820:CDS
ATATCAAGAAAATATGGCCT+TGG 0.468926 3_2:+78495043 None:intergenic
GTGCATAGTATATTGTTAAG+TGG 0.474103 3_2:-78492467 Msa0427820:three_prime_UTR
GCACTTAGCTTCCCAGGAAG+TGG 0.475231 3_2:-78493138 Msa0427820:CDS
GCACAGAGGGGATGCCTGCA+TGG 0.478162 3_2:+78494735 None:intergenic
GTAGATGGAATGCTTGGCCT+TGG 0.479671 3_2:-78493874 Msa0427820:CDS
GAACATGGGAAATGTTTGCT+TGG 0.481022 3_2:-78492944 Msa0427820:CDS
GTGGAAGATGTAAACCTAAT+CGG 0.481109 3_2:-78492895 Msa0427820:CDS
ACTCTCCCTCTATGTTGGTA+TGG 0.486306 3_2:-78493213 Msa0427820:CDS
ATATATCGTGTTCTATAAAG+TGG 0.488423 3_2:+78492533 None:intergenic
ATTCTAGACGGCTCTGAAGT+AGG 0.488461 3_2:-78492919 Msa0427820:CDS
AAGGCCAAGCATTCCATCTA+CGG 0.491428 3_2:+78493876 None:intergenic
TCAAGAAAATATGGCCTTGG+TGG 0.495645 3_2:+78495046 None:intergenic
CACCCCGTAGATGGAATGCT+TGG 0.499828 3_2:-78493880 Msa0427820:CDS
ACGATATATGGTTGTATGAA+AGG 0.500199 3_2:-78492519 Msa0427820:three_prime_UTR
ATCATGTTAGTTTGATTGCA+CGG 0.504799 3_2:-78492369 Msa0427820:three_prime_UTR
TACCATCACTTTGTCTAGCA+TGG 0.505530 3_2:+78492706 None:intergenic
CGAAAACGATTCAAGAATGA+AGG 0.508091 3_2:+78495870 None:intergenic
AGGCCAAGCATTCCATCTAC+GGG 0.508129 3_2:+78493877 None:intergenic
GTGCCATACGAACTTTAAGT+TGG 0.511112 3_2:+78494577 None:intergenic
GCAGATCATTACTCATCTCT+TGG 0.518717 3_2:-78494645 Msa0427820:CDS
TATAATGTGACTATCAACAT+TGG 0.520628 3_2:-78495073 Msa0427820:CDS
CTAGGCCGGTAAAGCGGATG+TGG 0.520658 3_2:+78494771 None:intergenic
AGATAATCTAAGAGTAATGC+AGG 0.524455 3_2:-78492311 None:intergenic
TATATTGTTAAGTGGTATAG+AGG 0.525590 3_2:-78492459 Msa0427820:three_prime_UTR
ACAATGAAAAGCAGTTGATA+GGG 0.527865 3_2:-78492679 Msa0427820:CDS
GTGATGCACGGATGCACAGA+GGG 0.529685 3_2:+78494722 None:intergenic
GGAGCTGAACTTGTTCTTGG+AGG 0.531520 3_2:-78493591 Msa0427820:CDS
GATGACGACGACGACGATGA+AGG 0.535925 3_2:+78495897 None:intergenic
CATGGGACTAAGTCATTGCT+AGG 0.535975 3_2:+78494753 None:intergenic
AACTTGTTCTTGGAGGGAAG+AGG 0.539126 3_2:-78493584 Msa0427820:CDS
TGGAATGCTTGGCCTTGGCA+GGG 0.541186 3_2:-78493869 Msa0427820:CDS
GGAATGCTTGGCCTTGGCAG+GGG 0.545359 3_2:-78493868 Msa0427820:CDS
GAGCTGAACTTGTTCTTGGA+GGG 0.545394 3_2:-78493590 Msa0427820:CDS
CATTCCATCTACGGGGTGGT+AGG 0.549212 3_2:+78493885 None:intergenic
AGTTTGATTGCACGGCATTG+GGG 0.551103 3_2:-78492361 Msa0427820:three_prime_UTR
ATATCACAGCTGAATGGTCA+GGG 0.557396 3_2:-78493832 Msa0427820:CDS
CTGTGCATCCGTGCATCACA+CGG 0.557548 3_2:-78494718 Msa0427820:CDS
TCAGCAAACATTACTCAGCA+GGG 0.557841 3_2:-78493614 Msa0427820:intron
ATAGAGAAATCATGAAGTCA+GGG 0.558907 3_2:-78496058 Msa0427820:exon
AGGTTGTTCATATGAAAGAA+TGG 0.559496 3_2:+78495917 None:intergenic
CACAGAGGGGATGCCTGCAT+GGG 0.564456 3_2:+78494736 None:intergenic
GGACTAAGTCATTGCTAGGC+CGG 0.569566 3_2:+78494757 None:intergenic
GTTTGCTTGGGCATTCTAGA+CGG 0.569919 3_2:-78492931 Msa0427820:CDS
GTAGTTATCCGTGTGATGCA+CGG 0.570573 3_2:+78494710 None:intergenic
ACCAAACTCTCCCTCTATGT+TGG 0.574564 3_2:-78493218 Msa0427820:CDS
TTAAAGTTCGTATGGCACTT+GGG 0.575859 3_2:-78494572 Msa0427820:intron
ACACGGGTAGCGACCTAACA+TGG 0.578697 3_2:-78495018 Msa0427820:CDS
ACCTGAGAGCAACGCGAACA+AGG 0.580548 3_2:+78494980 None:intergenic
GGTTTAGTGAGAAATGTCGT+TGG 0.585900 3_2:-78493811 Msa0427820:CDS
GCAATGACTTAGTCCCATGC+AGG 0.592637 3_2:-78494749 Msa0427820:CDS
CAAGAAAATATGGCCTTGGT+GGG 0.593840 3_2:+78495047 None:intergenic
TTTCCATATGTAGTTGACGA+AGG 0.600659 3_2:-78493277 Msa0427820:intron
AGCTTGATATCACAGCTGAA+TGG 0.601370 3_2:-78493838 Msa0427820:CDS
TGTTTGAGTGCACAAGGCGG+AGG 0.601478 3_2:-78493784 Msa0427820:CDS
AGTCCAACTTAAAGTTCGTA+TGG 0.601835 3_2:-78494580 Msa0427820:CDS
ATTCAGCTGTGATATCAAGC+TGG 0.604358 3_2:+78493840 None:intergenic
AGACGGCTCTGAAGTAGGAG+TGG 0.605898 3_2:-78492914 Msa0427820:CDS
AAACCAAGCTAAACAAGTAG+AGG 0.606468 3_2:+78495998 None:intergenic
TAGTTGACGAAGGAATTAGC+TGG 0.606843 3_2:-78493267 Msa0427820:CDS
AAATTGTTCTTCCAGAACAT+GGG 0.610504 3_2:-78492958 Msa0427820:intron
TATATCGTGTTCTATAAAGT+GGG 0.612282 3_2:+78492534 None:intergenic
ATAATCAGATATGCTTCAGG+AGG 0.624631 3_2:+78493090 None:intergenic
GGACACTGTTTGAGTGCACA+AGG 0.625207 3_2:-78493790 Msa0427820:CDS
TTTGATTACGAAAGATACAT+CGG 0.632392 3_2:-78492607 Msa0427820:exon
ATGAAAAGCAGTTGATAGGG+TGG 0.632654 3_2:-78492676 Msa0427820:CDS
ATCCATGCTAGACAAAGTGA+TGG 0.638414 3_2:-78492708 Msa0427820:CDS
TCAACATTGGGTACCCACCA+AGG 0.642379 3_2:-78495060 Msa0427820:CDS
GATAAACATTTCCATGAACC+GGG 0.645327 3_2:+78495826 None:intergenic
AGAAAACTGAGACTATGTTG+TGG 0.653321 3_2:+78496119 None:intergenic
AGCAAACATTACTCAGCAGG+GGG 0.654958 3_2:-78493612 Msa0427820:CDS
CAGCAAACATTACTCAGCAG+GGG 0.656453 3_2:-78493613 Msa0427820:CDS
TCATTGCTAGGCCGGTAAAG+CGG 0.656612 3_2:+78494765 None:intergenic
TAATCAGATATGCTTCAGGA+GGG 0.677945 3_2:+78493091 None:intergenic
ATGTAAACTGATTAACTGAG+TGG 0.681726 3_2:+78492584 None:intergenic
GAAGATGTAAACCTAATCGG+AGG 0.690670 3_2:-78492892 Msa0427820:intron
CAAGCATTCCATCTACGGGG+TGG 0.700753 3_2:+78493881 None:intergenic
TGTGATGCACGGATGCACAG+AGG 0.715403 3_2:+78494721 None:intergenic
CACTGTTTGAGTGCACAAGG+CGG 0.732542 3_2:-78493787 Msa0427820:CDS
GGCCAAGCATTCCATCTACG+GGG 0.749113 3_2:+78493878 None:intergenic
TGATGCACGGATGCACAGAG+GGG 0.795188 3_2:+78494723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATTCAAATTACTTT+AGG + chr3_2:78492821-78492840 None:intergenic 10.0%
!! AATAATAAAACATCTTTATA+AGG - chr3_2:78492832-78492851 Msa0427820:intron 10.0%
!!! CTTTTTTTTTAATATATAGA+TGG - chr3_2:78492913-78492932 Msa0427820:CDS 10.0%
!! TAAATACTATTATTAGTTAA+TGG + chr3_2:78494246-78494265 None:intergenic 10.0%
!! AAAAAAAAAGCTTTCAATTT+GGG + chr3_2:78492903-78492922 None:intergenic 15.0%
!! TAAAAAAAAAGCTTTCAATT+TGG + chr3_2:78492904-78492923 None:intergenic 15.0%
!! TAAGTATAATTTATTCTGTT+TGG - chr3_2:78493072-78493091 Msa0427820:intron 15.0%
!!! TATTGAAGATTAATTTTGAT+AGG + chr3_2:78493652-78493671 None:intergenic 15.0%
!! AAAGTTTCCAATTTATATAT+GGG - chr3_2:78494193-78494212 Msa0427820:intron 15.0%
!! ATTATTAGTTAATGGTATTA+TGG + chr3_2:78494238-78494257 None:intergenic 15.0%
!! CTAATAATAGTATTTACTAA+TGG - chr3_2:78494250-78494269 Msa0427820:intron 15.0%
!!! TGATTTTTACTTCTTAATAA+AGG + chr3_2:78494485-78494504 None:intergenic 15.0%
!! TTTATTAAGAAGTAAAAATC+AGG - chr3_2:78494484-78494503 Msa0427820:intron 15.0%
!! AACAAAGAGAATGTAAAAAA+AGG + chr3_2:78492683-78492702 None:intergenic 20.0%
!!! TCATTTTTTTTTGTTTCCTT+CGG - chr3_2:78492705-78492724 Msa0427820:CDS 20.0%
!! TAAAATAACAGAACAAAACA+TGG + chr3_2:78492793-78492812 None:intergenic 20.0%
!! ATTATTCAAATTACTTTAGG+AGG + chr3_2:78492818-78492837 None:intergenic 20.0%
!! ACAAAGAAAAACATGATTAT+GGG + chr3_2:78492870-78492889 None:intergenic 20.0%
!!! AATTTTGTCACCTTAAAAAA+TGG + chr3_2:78493008-78493027 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG - chr3_2:78493042-78493061 Msa0427820:intron 20.0%
!! AATCAATTGTAAAAACCAAT+TGG + chr3_2:78493236-78493255 None:intergenic 20.0%
!! GTGATTGAACAATAAATTTA+AGG + chr3_2:78493264-78493283 None:intergenic 20.0%
!!! CATTCAAAATCATTTTTTGT+TGG - chr3_2:78493300-78493319 Msa0427820:intron 20.0%
!!! ATATTTTCTTGATATTGACA+CGG - chr3_2:78493424-78493443 Msa0427820:intron 20.0%
!! GAAAGTTTCCAATTTATATA+TGG - chr3_2:78494192-78494211 Msa0427820:intron 20.0%
!! AAGTTTCCAATTTATATATG+GGG - chr3_2:78494194-78494213 Msa0427820:intron 20.0%
!! TAAACTACTATTCTAAGTTT+GGG - chr3_2:78494292-78494311 Msa0427820:intron 20.0%
!! TTAATAAAGGATTAAGTGTA+TGG + chr3_2:78494472-78494491 None:intergenic 20.0%
!! AACTACATATGGAAATAAAA+CGG + chr3_2:78495177-78495196 None:intergenic 20.0%
!! AAAAGATAAAGCAAAAAAAG+TGG + chr3_2:78495669-78495688 None:intergenic 20.0%
!! TAACATGATATGTTGTTATA+TGG + chr3_2:78496079-78496098 None:intergenic 20.0%
! GACAAAGAAAAACATGATTA+TGG + chr3_2:78492871-78492890 None:intergenic 25.0%
!! AATCATATCAAGTGATTTTG+TGG - chr3_2:78492950-78492969 Msa0427820:intron 25.0%
! AACATACACATAAATTGGAA+CGG + chr3_2:78492978-78492997 None:intergenic 25.0%
! CCTATAACATACACATAAAT+TGG + chr3_2:78492983-78493002 None:intergenic 25.0%
! CCAATTTATGTGTATGTTAT+AGG - chr3_2:78492980-78492999 Msa0427820:intron 25.0%
!!! GTTATAGGTTCCATTTTTTA+AGG - chr3_2:78492995-78493014 Msa0427820:intron 25.0%
!!! AAGGTGACAAAATTGATTTT+AGG - chr3_2:78493014-78493033 Msa0427820:intron 25.0%
!!! AGGTGACAAAATTGATTTTA+GGG - chr3_2:78493015-78493034 Msa0427820:intron 25.0%
! TATAACATAAAGCTAGAAGT+TGG - chr3_2:78493109-78493128 Msa0427820:CDS 25.0%
!!! TCAAAATCATTTTTTGTTGG+CGG - chr3_2:78493303-78493322 Msa0427820:intron 25.0%
! TATAATGTGACTATCAACAT+TGG - chr3_2:78493386-78493405 Msa0427820:intron 25.0%
! ATAATGTGACTATCAACATT+GGG - chr3_2:78493387-78493406 Msa0427820:intron 25.0%
! GTGTCAATATCAAGAAAATA+TGG + chr3_2:78493425-78493444 None:intergenic 25.0%
!! TATTTTCTTGATATTGACAC+GGG - chr3_2:78493425-78493444 Msa0427820:intron 25.0%
!!! TTCAAAGTTGTTAATTTGCT+AGG + chr3_2:78493544-78493563 None:intergenic 25.0%
! CTAATCTCATTTCAAGAAAA+AGG + chr3_2:78493575-78493594 None:intergenic 25.0%
! TATGTTCTCAACTTTACAAA+TGG - chr3_2:78493856-78493875 Msa0427820:CDS 25.0%
!!! TTTGTTTTCATAAACTATCC+CGG - chr3_2:78494097-78494116 Msa0427820:intron 25.0%
!!! AACTTTCACTTTAAAATCTC+CGG + chr3_2:78494179-78494198 None:intergenic 25.0%
! GTTTAGAAATAAGAACTTGA+TGG + chr3_2:78494277-78494296 None:intergenic 25.0%
! CTAAACTACTATTCTAAGTT+TGG - chr3_2:78494291-78494310 Msa0427820:intron 25.0%
! TTATCAAGCACTAATTTCTT+GGG - chr3_2:78494966-78494985 Msa0427820:intron 25.0%
!! TTTAAAATGCTTGAAATTCG+AGG + chr3_2:78495018-78495037 None:intergenic 25.0%
! TCACTAATACGAGAAAATAT+TGG - chr3_2:78495129-78495148 Msa0427820:intron 25.0%
! ACTTCATATACACTTCTAAA+AGG + chr3_2:78495279-78495298 None:intergenic 25.0%
!! AATTGATAATATCCGTTAAC+AGG + chr3_2:78495633-78495652 None:intergenic 25.0%
! TTTGATTACGAAAGATACAT+CGG - chr3_2:78495852-78495871 Msa0427820:CDS 25.0%
! TATATCGTGTTCTATAAAGT+GGG + chr3_2:78495928-78495947 None:intergenic 25.0%
! ATATATCGTGTTCTATAAAG+TGG + chr3_2:78495929-78495948 None:intergenic 25.0%
! ACTTTATAGAACACGATATA+TGG - chr3_2:78495928-78495947 Msa0427820:CDS 25.0%
! TATATTGTTAAGTGGTATAG+AGG - chr3_2:78496000-78496019 Msa0427820:CDS 25.0%
AATAGAGAAATCATGAAGTC+AGG - chr3_2:78492400-78492419 Msa0427820:three_prime_UTR 30.0%
ATAGAGAAATCATGAAGTCA+GGG - chr3_2:78492401-78492420 Msa0427820:three_prime_UTR 30.0%
!! ATTTCAAGTTCAAGTGCAAA+TGG - chr3_2:78492511-78492530 Msa0427820:three_prime_UTR 30.0%
AGGTTGTTCATATGAAAGAA+TGG + chr3_2:78492545-78492564 None:intergenic 30.0%
ATGGAAATGTTTATCCTGTT+GGG - chr3_2:78492641-78492660 Msa0427820:CDS 30.0%
ATAACAGAACAAAACATGGA+GGG + chr3_2:78492789-78492808 None:intergenic 30.0%
AATAACAGAACAAAACATGG+AGG + chr3_2:78492790-78492809 None:intergenic 30.0%
AGAAAAACATGATTATGGGA+AGG + chr3_2:78492866-78492885 None:intergenic 30.0%
ACATACACATAAATTGGAAC+GGG + chr3_2:78492977-78492996 None:intergenic 30.0%
!! GGTGACAAAATTGATTTTAG+GGG - chr3_2:78493016-78493035 Msa0427820:intron 30.0%
!! TTGGTGCATGTTTTAAATTG+CGG - chr3_2:78493128-78493147 Msa0427820:CDS 30.0%
CCTGCATATGTTAAAAGTAA+GGG + chr3_2:78493363-78493382 None:intergenic 30.0%
ACCTGCATATGTTAAAAGTA+AGG + chr3_2:78493364-78493383 None:intergenic 30.0%
ATATCAAGAAAATATGGCCT+TGG + chr3_2:78493419-78493438 None:intergenic 30.0%
! TGCTAGGTAATTTTGAATGT+TGG + chr3_2:78493528-78493547 None:intergenic 30.0%
CAGACATACATATATCTATC+TGG + chr3_2:78493606-78493625 None:intergenic 30.0%
!!! TTTAGGTTTTTAGTCCTAGT+TGG - chr3_2:78493977-78493996 Msa0427820:intron 30.0%
! CTTATTTCCATTATTTCTCC+GGG + chr3_2:78494118-78494137 None:intergenic 30.0%
! CCTTATTTCCATTATTTCTC+CGG + chr3_2:78494119-78494138 None:intergenic 30.0%
TGTAAGCCCCATATATAAAT+TGG + chr3_2:78494203-78494222 None:intergenic 30.0%
TTGAATCTATCTACTGACAT+AGG + chr3_2:78494353-78494372 None:intergenic 30.0%
AGAACATACACAGAGATATT+TGG + chr3_2:78494386-78494405 None:intergenic 30.0%
AAATATCTCTGTGTATGTTC+TGG - chr3_2:78494385-78494404 Msa0427820:intron 30.0%
!!! GCTATCTAGTACAACTTTTT+TGG - chr3_2:78494506-78494525 Msa0427820:intron 30.0%
!! TTGGTTATTTTATGCAGATG+CGG - chr3_2:78494525-78494544 Msa0427820:intron 30.0%
TGTTTATGATTCTTCTCGAT+TGG - chr3_2:78494716-78494735 Msa0427820:CDS 30.0%
CTTATCAAGCACTAATTTCT+TGG - chr3_2:78494965-78494984 Msa0427820:intron 30.0%
! TTTTTCCATACCAACATAGA+GGG + chr3_2:78495254-78495273 None:intergenic 30.0%
GATATAATCAGATATGCTTC+AGG + chr3_2:78495375-78495394 None:intergenic 30.0%
! CTTGAAGAAAGTGATTAGTT+AGG + chr3_2:78495410-78495429 None:intergenic 30.0%
AAATTGTTCTTCCAGAACAT+GGG - chr3_2:78495501-78495520 Msa0427820:intron 30.0%
! ACAATGAAAAGCAGTTGATA+GGG - chr3_2:78495780-78495799 Msa0427820:intron 30.0%
TAATCAAATGCTGACATCTT+TGG + chr3_2:78495840-78495859 None:intergenic 30.0%
ATGTAAACTGATTAACTGAG+TGG + chr3_2:78495878-78495897 None:intergenic 30.0%
ACGATATATGGTTGTATGAA+AGG - chr3_2:78495940-78495959 Msa0427820:CDS 30.0%
GTGCATAGTATATTGTTAAG+TGG - chr3_2:78495992-78496011 Msa0427820:CDS 30.0%
! ATCATGTTAGTTTGATTGCA+CGG - chr3_2:78496090-78496109 Msa0427820:five_prime_UTR 30.0%
! TTGGGGATTTCATTTAGAAT+TGG - chr3_2:78496115-78496134 Msa0427820:five_prime_UTR 30.0%
AGAAAACTGAGACTATGTTG+TGG + chr3_2:78492343-78492362 None:intergenic 35.0%
AATCATGAAGTCAGGGAAAT+TGG - chr3_2:78492408-78492427 Msa0427820:three_prime_UTR 35.0%
AAACCAAGCTAAACAAGTAG+AGG + chr3_2:78492464-78492483 None:intergenic 35.0%
!! TCTACTTGTTTAGCTTGGTT+TGG - chr3_2:78492463-78492482 Msa0427820:three_prime_UTR 35.0%
CGAAAACGATTCAAGAATGA+AGG + chr3_2:78492592-78492611 None:intergenic 35.0%
! TTCTTGAATCGTTTTCGTTC+TGG - chr3_2:78492595-78492614 Msa0427820:three_prime_UTR 35.0%
GATAAACATTTCCATGAACC+GGG + chr3_2:78492636-78492655 None:intergenic 35.0%
GGATAAACATTTCCATGAAC+CGG + chr3_2:78492637-78492656 None:intergenic 35.0%
CATGGAAATGTTTATCCTGT+TGG - chr3_2:78492640-78492659 Msa0427820:CDS 35.0%
TTTATGCCTTTCTTTCTCCT+AGG - chr3_2:78492734-78492753 Msa0427820:intron 35.0%
! TCTTCATGCCTTTTCCTATT+TGG - chr3_2:78492763-78492782 Msa0427820:intron 35.0%
CATTGAGTTTCTCGAAATCA+TGG + chr3_2:78493197-78493216 None:intergenic 35.0%
!! CCCTTACTTTTAACATATGC+AGG - chr3_2:78493360-78493379 Msa0427820:intron 35.0%
AGTCCAACTTAAAGTTCGTA+TGG - chr3_2:78493879-78493898 Msa0427820:CDS 35.0%
TTAAAGTTCGTATGGCACTT+GGG - chr3_2:78493887-78493906 Msa0427820:CDS 35.0%
GGGTATGTAAAGCCTATTTA+AGG + chr3_2:78493941-78493960 None:intergenic 35.0%
TAAAGAAGTGAGAGTGGTAT+GGG + chr3_2:78493961-78493980 None:intergenic 35.0%
AAAACCTAAAGAAGTGAGAG+TGG + chr3_2:78493967-78493986 None:intergenic 35.0%
AAACTATCCCGGAGAAATAA+TGG - chr3_2:78494108-78494127 Msa0427820:intron 35.0%
! CCGGAGAAATAATGGAAATA+AGG - chr3_2:78494116-78494135 Msa0427820:intron 35.0%
ACTACTATTCTAAGTTTGGG+TGG - chr3_2:78494295-78494314 Msa0427820:intron 35.0%
CTACTATTCTAAGTTTGGGT+GGG - chr3_2:78494296-78494315 Msa0427820:intron 35.0%
!! TATTGGCTCATTGCTTAACA+CGG - chr3_2:78495146-78495165 Msa0427820:intron 35.0%
TTTCCATATGTAGTTGACGA+AGG - chr3_2:78495182-78495201 Msa0427820:intron 35.0%
ATTCCTTCGTCAACTACATA+TGG + chr3_2:78495188-78495207 None:intergenic 35.0%
! TCTTCAGGTGCTTCTTTTAT+GGG + chr3_2:78495222-78495241 None:intergenic 35.0%
! CTTTTTCCATACCAACATAG+AGG + chr3_2:78495255-78495274 None:intergenic 35.0%
TAATCAGATATGCTTCAGGA+GGG + chr3_2:78495371-78495390 None:intergenic 35.0%
ATAATCAGATATGCTTCAGG+AGG + chr3_2:78495372-78495391 None:intergenic 35.0%
CAAATTGTTCTTCCAGAACA+TGG - chr3_2:78495500-78495519 Msa0427820:intron 35.0%
AACATGGGAAATGTTTGCTT+GGG - chr3_2:78495516-78495535 Msa0427820:intron 35.0%
GTGGAAGATGTAAACCTAAT+CGG - chr3_2:78495564-78495583 Msa0427820:intron 35.0%
! GCATAGTTCATCAAGAGTTT+TGG + chr3_2:78495694-78495713 None:intergenic 35.0%
GACAATGAAAAGCAGTTGAT+AGG - chr3_2:78495779-78495798 Msa0427820:intron 35.0%
!!! CATCTTTGGATTTTGGAACT+CGG + chr3_2:78495826-78495845 None:intergenic 35.0%
! ATGCTGACATCTTTGGATTT+TGG + chr3_2:78495833-78495852 None:intergenic 35.0%
GTTCCTCTACTTGTTTAGCT+TGG - chr3_2:78492458-78492477 Msa0427820:three_prime_UTR 40.0%
!!! TCGTTTTCGTTCTGGTTCAT+CGG - chr3_2:78492603-78492622 Msa0427820:three_prime_UTR 40.0%
! GTTCTTTTTACGTACCCAAC+AGG + chr3_2:78492658-78492677 None:intergenic 40.0%
AAGGCATAAAGTGAAACCGA+AGG + chr3_2:78492724-78492743 None:intergenic 40.0%
AAGCAACCTAGGAGAAAGAA+AGG + chr3_2:78492743-78492762 None:intergenic 40.0%
GAGTTCGAATATGCACCAAT+TGG - chr3_2:78493218-78493237 Msa0427820:CDS 40.0%
! CAAGAAAATATGGCCTTGGT+GGG + chr3_2:78493415-78493434 None:intergenic 40.0%
! TCAAGAAAATATGGCCTTGG+TGG + chr3_2:78493416-78493435 None:intergenic 40.0%
CATCACATTGAAGCCATGTT+AGG + chr3_2:78493457-78493476 None:intergenic 40.0%
GCAGATCATTACTCATCTCT+TGG - chr3_2:78493814-78493833 Msa0427820:CDS 40.0%
GTGCCATACGAACTTTAAGT+TGG + chr3_2:78493885-78493904 None:intergenic 40.0%
CTTAAAGTTCGTATGGCACT+TGG - chr3_2:78493886-78493905 Msa0427820:CDS 40.0%
!! ACCCTTTGCTAGCCTTAAAT+AGG - chr3_2:78493926-78493945 Msa0427820:intron 40.0%
! GCCTATTTAAGGCTAGCAAA+GGG + chr3_2:78493930-78493949 None:intergenic 40.0%
! AGCCTATTTAAGGCTAGCAA+AGG + chr3_2:78493931-78493950 None:intergenic 40.0%
CTAAAGAAGTGAGAGTGGTA+TGG + chr3_2:78493962-78493981 None:intergenic 40.0%
CATACCACTCTCACTTCTTT+AGG - chr3_2:78493960-78493979 Msa0427820:intron 40.0%
AACGCTTATGCTATCCAACT+AGG + chr3_2:78493994-78494013 None:intergenic 40.0%
GTGTCAGAAGTTGTAACAAC+CGG - chr3_2:78494157-78494176 Msa0427820:intron 40.0%
TACTGACATAGGCATTTGTG+AGG + chr3_2:78494342-78494361 None:intergenic 40.0%
! CTGAAACACTTGTTGCAGAA+AGG + chr3_2:78494421-78494440 None:intergenic 40.0%
ATTCAGCTGTGATATCAAGC+TGG + chr3_2:78494622-78494641 None:intergenic 40.0%
AGCTTGATATCACAGCTGAA+TGG - chr3_2:78494621-78494640 Msa0427820:CDS 40.0%
ATATCACAGCTGAATGGTCA+GGG - chr3_2:78494627-78494646 Msa0427820:CDS 40.0%
GGTTTAGTGAGAAATGTCGT+TGG - chr3_2:78494648-78494667 Msa0427820:CDS 40.0%
! ATGATTCTTCTCGATTGGCT+TGG - chr3_2:78494721-78494740 Msa0427820:CDS 40.0%
TACTAATCTCTCGACGACAT+TGG + chr3_2:78494750-78494769 None:intergenic 40.0%
TCAGCAAACATTACTCAGCA+GGG - chr3_2:78494845-78494864 Msa0427820:intron 40.0%
!!! TTCTTGCTGTTTTTGACGCT+GGG - chr3_2:78494914-78494933 Msa0427820:intron 40.0%
!! CGTTGACATAGTCTTGTTTG+TGG + chr3_2:78495056-78495075 None:intergenic 40.0%
TAGTTGACGAAGGAATTAGC+TGG - chr3_2:78495192-78495211 Msa0427820:intron 40.0%
! GTCTTCAGGTGCTTCTTTTA+TGG + chr3_2:78495223-78495242 None:intergenic 40.0%
TTCAGGAGGGATTTCGAATT+GGG + chr3_2:78495358-78495377 None:intergenic 40.0%
TTGTCAGCATGACACATGTA+AGG + chr3_2:78495483-78495502 None:intergenic 40.0%
AGCAAACATTTCCCATGTTC+TGG + chr3_2:78495515-78495534 None:intergenic 40.0%
GAACATGGGAAATGTTTGCT+TGG - chr3_2:78495515-78495534 Msa0427820:intron 40.0%
GAAGATGTAAACCTAATCGG+AGG - chr3_2:78495567-78495586 Msa0427820:intron 40.0%
ATGTAAACCTAATCGGAGGT+AGG - chr3_2:78495571-78495590 Msa0427820:intron 40.0%
CTGATGCTTGTTCCTGTTAA+CGG - chr3_2:78495618-78495637 Msa0427820:intron 40.0%
ATGGATATGTCTGCATACAC+AGG + chr3_2:78495737-78495756 None:intergenic 40.0%
ATCCATGCTAGACAAAGTGA+TGG - chr3_2:78495751-78495770 Msa0427820:intron 40.0%
TACCATCACTTTGTCTAGCA+TGG + chr3_2:78495756-78495775 None:intergenic 40.0%
!! ATGAAAAGCAGTTGATAGGG+TGG - chr3_2:78495783-78495802 Msa0427820:intron 40.0%
! TTAGTTTGATTGCACGGCAT+TGG - chr3_2:78496096-78496115 Msa0427820:five_prime_UTR 40.0%
TAGTTTGATTGCACGGCATT+GGG - chr3_2:78496097-78496116 Msa0427820:five_prime_UTR 40.0%
AGGCATGAAGAAAGCAACCT+AGG + chr3_2:78492754-78492773 None:intergenic 45.0%
ATGGAGGGCCAAATAGGAAA+AGG + chr3_2:78492774-78492793 None:intergenic 45.0%
CAAAACATGGAGGGCCAAAT+AGG + chr3_2:78492780-78492799 None:intergenic 45.0%
CATGGGACTAAGTCATTGCT+AGG + chr3_2:78493709-78493728 None:intergenic 45.0%
GTAGTTATCCGTGTGATGCA+CGG + chr3_2:78493752-78493771 None:intergenic 45.0%
AAGGCCAAGCATTCCATCTA+CGG + chr3_2:78494586-78494605 None:intergenic 45.0%
GATATCACAGCTGAATGGTC+AGG - chr3_2:78494626-78494645 Msa0427820:CDS 45.0%
CTCAGCAAACATTACTCAGC+AGG - chr3_2:78494844-78494863 Msa0427820:intron 45.0%
CAGCAAACATTACTCAGCAG+GGG - chr3_2:78494846-78494865 Msa0427820:intron 45.0%
AGCAAACATTACTCAGCAGG+GGG - chr3_2:78494847-78494866 Msa0427820:intron 45.0%
! GAGCTGAACTTGTTCTTGGA+GGG - chr3_2:78494869-78494888 Msa0427820:intron 45.0%
! AACTTGTTCTTGGAGGGAAG+AGG - chr3_2:78494875-78494894 Msa0427820:intron 45.0%
!!! CTTCTTGCTGTTTTTGACGC+TGG - chr3_2:78494913-78494932 Msa0427820:intron 45.0%
ACCAAACTCTCCCTCTATGT+TGG - chr3_2:78495241-78495260 Msa0427820:intron 45.0%
ACCAACATAGAGGGAGAGTT+TGG + chr3_2:78495245-78495264 None:intergenic 45.0%
ACTCTCCCTCTATGTTGGTA+TGG - chr3_2:78495246-78495265 Msa0427820:intron 45.0%
CTTTCGATCTTCCACTTCCT+GGG + chr3_2:78495335-78495354 None:intergenic 45.0%
CTTCAGGAGGGATTTCGAAT+TGG + chr3_2:78495359-78495378 None:intergenic 45.0%
GTTTGCTTGGGCATTCTAGA+CGG - chr3_2:78495528-78495547 Msa0427820:intron 45.0%
!! ATTCTAGACGGCTCTGAAGT+AGG - chr3_2:78495540-78495559 Msa0427820:intron 45.0%
AACCTAATCGGAGGTAGGAA+TGG - chr3_2:78495576-78495595 Msa0427820:intron 45.0%
AGTTTGATTGCACGGCATTG+GGG - chr3_2:78496098-78496117 Msa0427820:five_prime_UTR 45.0%
TCAACATTGGGTACCCACCA+AGG - chr3_2:78493399-78493418 Msa0427820:intron 50.0%
AGACACCACATCCGCTTTAC+CGG - chr3_2:78493683-78493702 Msa0427820:intron 50.0%
TCATTGCTAGGCCGGTAAAG+CGG + chr3_2:78493697-78493716 None:intergenic 50.0%
GGACTAAGTCATTGCTAGGC+CGG + chr3_2:78493705-78493724 None:intergenic 50.0%
GCAATGACTTAGTCCCATGC+AGG - chr3_2:78493710-78493729 Msa0427820:intron 50.0%
AGGCCAAGCATTCCATCTAC+GGG + chr3_2:78494585-78494604 None:intergenic 50.0%
GTAGATGGAATGCTTGGCCT+TGG - chr3_2:78494585-78494604 Msa0427820:CDS 50.0%
GGACACTGTTTGAGTGCACA+AGG - chr3_2:78494669-78494688 Msa0427820:CDS 50.0%
CACTGTTTGAGTGCACAAGG+CGG - chr3_2:78494672-78494691 Msa0427820:CDS 50.0%
GGCGGAGGATACATCTTCTT+TGG - chr3_2:78494690-78494709 Msa0427820:CDS 50.0%
! GGAGCTGAACTTGTTCTTGG+AGG - chr3_2:78494868-78494887 Msa0427820:intron 50.0%
TTCTTGGAGGGAAGAGGACT+GGG - chr3_2:78494881-78494900 Msa0427820:intron 50.0%
! AGAGGGAGAGTTTGGTCTTC+AGG + chr3_2:78495237-78495256 None:intergenic 50.0%
CCTGGGAAGCTAAGTGCAAT+AGG + chr3_2:78495318-78495337 None:intergenic 50.0%
CCTATTGCACTTAGCTTCCC+AGG - chr3_2:78495315-78495334 Msa0427820:intron 50.0%
GCTTTCGATCTTCCACTTCC+TGG + chr3_2:78495336-78495355 None:intergenic 50.0%
TGTCTGCATACACAGGACGA+GGG + chr3_2:78495730-78495749 None:intergenic 50.0%
ATGTCTGCATACACAGGACG+AGG + chr3_2:78495731-78495750 None:intergenic 50.0%
GATGACGACGACGACGATGA+AGG + chr3_2:78492565-78492584 None:intergenic 55.0%
TGGTTCATCGGTCGTGTTCC+CGG - chr3_2:78492615-78492634 Msa0427820:exon 55.0%
ACACGGGTAGCGACCTAACA+TGG - chr3_2:78493441-78493460 Msa0427820:intron 55.0%
ACCTGAGAGCAACGCGAACA+AGG + chr3_2:78493482-78493501 None:intergenic 55.0%
TGATGCACGGATGCACAGAG+GGG + chr3_2:78493739-78493758 None:intergenic 55.0%
GTGATGCACGGATGCACAGA+GGG + chr3_2:78493740-78493759 None:intergenic 55.0%
TGTGATGCACGGATGCACAG+AGG + chr3_2:78493741-78493760 None:intergenic 55.0%
CTGTGCATCCGTGCATCACA+CGG - chr3_2:78493741-78493760 Msa0427820:CDS 55.0%
ACGGGGTGGTAGGAAGAATC+TGG + chr3_2:78494567-78494586 None:intergenic 55.0%
TCTTCCTACCACCCCGTAGA+TGG - chr3_2:78494570-78494589 Msa0427820:intron 55.0%
CATTCCATCTACGGGGTGGT+AGG + chr3_2:78494577-78494596 None:intergenic 55.0%
CAAGCATTCCATCTACGGGG+TGG + chr3_2:78494581-78494600 None:intergenic 55.0%
CACCCCGTAGATGGAATGCT+TGG - chr3_2:78494579-78494598 Msa0427820:CDS 55.0%
GGCCAAGCATTCCATCTACG+GGG + chr3_2:78494584-78494603 None:intergenic 55.0%
!! ATGGAATGCTTGGCCTTGGC+AGG - chr3_2:78494589-78494608 Msa0427820:CDS 55.0%
!! TGGAATGCTTGGCCTTGGCA+GGG - chr3_2:78494590-78494609 Msa0427820:CDS 55.0%
! AGCTGGATTTTCCCCTGCCA+AGG + chr3_2:78494605-78494624 None:intergenic 55.0%
TGTTTGAGTGCACAAGGCGG+AGG - chr3_2:78494675-78494694 Msa0427820:CDS 55.0%
! GGGGGAGCTGAACTTGTTCT+TGG - chr3_2:78494865-78494884 Msa0427820:intron 55.0%
GTTCTTGGAGGGAAGAGGAC+TGG - chr3_2:78494880-78494899 Msa0427820:intron 55.0%
GCACTTAGCTTCCCAGGAAG+TGG - chr3_2:78495321-78495340 Msa0427820:intron 55.0%
!! AGACGGCTCTGAAGTAGGAG+TGG - chr3_2:78495545-78495564 Msa0427820:intron 55.0%
CGCCATTCCTACCTCCGATT+AGG + chr3_2:78495581-78495600 None:intergenic 55.0%
TCGGTCGTGTTCCCGGTTCA+TGG - chr3_2:78492622-78492641 Msa0427820:exon 60.0%
! GCCTTGTTCGCGTTGCTCTC+AGG - chr3_2:78493478-78493497 Msa0427820:intron 60.0%
CTAGGCCGGTAAAGCGGATG+TGG + chr3_2:78493691-78493710 None:intergenic 60.0%
CACAGAGGGGATGCCTGCAT+GGG + chr3_2:78493726-78493745 None:intergenic 60.0%
!! GGAATGCTTGGCCTTGGCAG+GGG - chr3_2:78494591-78494610 Msa0427820:CDS 60.0%
GGAGGGAAGAGGACTGGGTT+TGG - chr3_2:78494886-78494905 Msa0427820:intron 60.0%
GCACAGAGGGGATGCCTGCA+TGG + chr3_2:78493727-78493746 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78492314 78496167 78492314 ID=Msa0427820;Name=Msa0427820
chr3_2 mRNA 78492314 78496167 78492314 ID=Msa0427820-mRNA-1;Parent=Msa0427820;Name=Msa0427820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=98|0.85|0.87|1|1|1|8|311|441
chr3_2 exon 78492314 78492734 78492314 ID=Msa0427820-mRNA-1:exon:20865;Parent=Msa0427820-mRNA-1
chr3_2 exon 78492893 78492965 78492893 ID=Msa0427820-mRNA-1:exon:20864;Parent=Msa0427820-mRNA-1
chr3_2 exon 78493086 78493286 78493086 ID=Msa0427820-mRNA-1:exon:20863;Parent=Msa0427820-mRNA-1
chr3_2 exon 78493494 78493632 78493494 ID=Msa0427820-mRNA-1:exon:20862;Parent=Msa0427820-mRNA-1
chr3_2 exon 78493730 78493939 78493730 ID=Msa0427820-mRNA-1:exon:20861;Parent=Msa0427820-mRNA-1
chr3_2 exon 78494573 78494796 78494573 ID=Msa0427820-mRNA-1:exon:20860;Parent=Msa0427820-mRNA-1
chr3_2 exon 78494982 78495099 78494982 ID=Msa0427820-mRNA-1:exon:20859;Parent=Msa0427820-mRNA-1
chr3_2 exon 78495819 78496167 78495819 ID=Msa0427820-mRNA-1:exon:20858;Parent=Msa0427820-mRNA-1
chr3_2 five_prime_UTR 78496070 78496167 78496070 ID=Msa0427820-mRNA-1:five_prime_utr;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78495819 78496069 78495819 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78494982 78495099 78494982 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78494573 78494796 78494573 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78493730 78493939 78493730 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78493494 78493632 78493494 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78493086 78493286 78493086 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78492893 78492965 78492893 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 CDS 78492625 78492734 78492625 ID=Msa0427820-mRNA-1:cds;Parent=Msa0427820-mRNA-1
chr3_2 three_prime_UTR 78492314 78492624 78492314 ID=Msa0427820-mRNA-1:three_prime_utr;Parent=Msa0427820-mRNA-1
Gene Sequence

>Msa0427820

ATGAAGTCAGGGAAATTGGTATTCTTTGTTGTTCTACTCTTGTTGAGTTCCTCTACTTGTTTAGCTTGGTTTGGTAGTAGTAGTAGTAGCAAACACAAAATTTCAAGTTCAAGTGCAAATGGAAGAAACTCCATTCTTTCATATGAACAACCTTCATCGTCGTCGTCGTCATCATCGCCTTCATTCTTGAATCGTTTTCGTTCTGGTTCATCGGTCGTGTTCCCGGTTCATGGAAATGTTTATCCTGTTGGGTTTTATAATGTGACTATCAACATTGGGTACCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTAACATGGCTTCAATGTGATGCGCCTTGTTCGCGTTGCTCTCAGACACCACATCCGCTTTACCGGCCTAGCAATGACTTAGTCCCATGCAGGCATCCCCTCTGTGCATCCGTGCATCACACGGATAACTACGACTGTGAAGTCGAGCATCAGTGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCTCTTGGTGTACTTGTCAATGATGTTTATGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGATGCGGCTATGATCAGATTTTTCCAGATTCTTCCTACCACCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGAAAATCCAGCTTGATATCACAGCTGAATGGTCAGGGTTTAGTGAGAAATGTCGTTGGACACTGTTTGAGTGCACAAGGCGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGGCTTGGACTCCAATCAAACATTACTCAGCAGGGGGAGCTGAACTTGTTCTTGGAGGGAAGAGGACTGGGTTTGGAAATCTTCTTGCTGTTTTTGACGCTGGGAGTTCTTATACTTACTTCAACTCTAATGCTTATCAAGCACTAATTTCTTGGTTGACGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGACCAAACTCTCCCTCTATGTTGGTATGGAAAAAGACCTTTTAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCTATTGCACTTAGCTTCCCAGGAAGTGGAAGATCGAAAGCCCAATTCGAAATCCCTCCTGAAGCATATCTGATTATATCAAACATGGGAAATGTTTGCTTGGGCATTCTAGACGGCTCTGAAGTAGGAGTGGAAGATGTAAACCTAATCGGAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAAAAGCAGTTGATAGGGTGGACAGCAGCAGATTGTAACCGAGTTCCAAAATCCAAAGATGTCAGCATTTGA
Protein sequence

>Msa0427820

MKSGKLVFFVVLLLLSSSTCLAWFGSSSSSKHKISSSSANGRNSILSYEQPSSSSSSSSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTINIGYPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASVHHTDNYDCEVEHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNGQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPIKHYSAGGAELVLGGKRTGFGNLLAVFDAGSSYTYFNSNAYQALISWLTKELAGKPIKEAPEDQTLPLCWYGKRPFRSVYEVRKYFKPIALSFPGSGRSKAQFEIPPEAYLIISNMGNVCLGILDGSEVGVEDVNLIGDISMLDKVMVFDNEKQLIGWTAADCNRVPKSKDVSI*