AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474060 MtrunA17_Chr3g0130741 96.197 447 10 2 1 442 1 445 0.0 874
Msa0474060 MtrunA17_Chr8g0384731 71.926 431 98 4 18 442 22 435 0.0 646
Msa0474060 MtrunA17_Chr1g0159791 55.026 378 159 5 68 436 39 414 6.53e-142 412
Msa0474060 MtrunA17_Chr4g0010951 45.232 409 179 9 71 437 46 451 1.86e-114 343
Msa0474060 MtrunA17_Chr6g0484731 44.474 380 187 10 71 431 176 550 2.69e-96 300
Msa0474060 MtrunA17_Chr3g0078321 37.500 400 216 15 55 435 32 416 7.90e-75 240
Msa0474060 MtrunA17_Chr4g0010941 44.492 236 94 4 235 435 2 235 1.10e-63 205
Msa0474060 MtrunA17_Chr1g0179751 25.845 414 252 13 66 439 84 482 1.73e-34 134
Msa0474060 MtrunA17_Chr1g0189381 27.727 440 260 17 40 441 20 439 1.23e-33 131
Msa0474060 MtrunA17_Chr7g0265331 26.277 411 234 17 75 439 68 455 2.08e-31 125
Msa0474060 MtrunA17_Chr7g0249451 26.406 409 247 17 66 439 49 438 3.04e-31 125
Msa0474060 MtrunA17_Chr2g0320621 26.933 401 244 16 66 432 53 438 1.19e-29 120
Msa0474060 MtrunA17_Chr4g0027681 25.127 394 243 15 73 432 62 437 6.16e-29 118
Msa0474060 MtrunA17_Chr7g0221681 27.252 433 253 19 47 439 31 441 1.34e-28 117
Msa0474060 MtrunA17_Chr4g0053721 27.251 411 245 18 52 431 43 430 2.04e-28 118
Msa0474060 MtrunA17_Chr5g0425141 27.568 370 213 15 91 431 106 449 1.05e-25 109
Msa0474060 MtrunA17_Chr5g0401601 26.203 374 233 15 85 434 87 441 4.10e-25 108
Msa0474060 MtrunA17_Chr8g0352671 24.250 400 245 13 65 434 68 439 4.14e-25 107
Msa0474060 MtrunA17_Chr5g0435871 25.250 400 239 16 65 434 68 437 3.62e-24 104
Msa0474060 MtrunA17_Chr8g0386441 25.000 396 243 14 65 434 65 432 4.06e-24 103
Msa0474060 MtrunA17_Chr5g0435971 25.250 400 239 16 65 434 65 434 1.39e-23 102
Msa0474060 MtrunA17_Chr8g0371371 29.024 379 213 19 91 438 117 470 2.20e-23 102
Msa0474060 MtrunA17_Chr2g0310831 25.191 393 239 16 66 433 80 442 4.74e-23 100
Msa0474060 MtrunA17_Chr5g0419291 25.132 378 224 16 85 434 85 431 7.01e-23 100
Msa0474060 MtrunA17_Chr3g0130931 25.564 399 223 22 71 434 92 451 8.84e-23 100
Msa0474060 MtrunA17_Chr8g0352661 25.700 393 231 16 72 434 78 439 1.47e-22 99.4
Msa0474060 MtrunA17_Chr3g0124421 25.575 391 219 15 91 442 104 461 1.63e-21 97.1
Msa0474060 MtrunA17_Chr2g0333991 24.934 381 236 13 76 430 78 434 1.95e-21 96.3
Msa0474060 MtrunA17_Chr5g0395911 26.546 388 217 17 80 433 62 415 6.10e-21 94.4
Msa0474060 MtrunA17_Chr2g0311451 24.479 384 240 13 76 433 78 437 6.19e-21 94.7
Msa0474060 MtrunA17_Chr2g0310801 23.969 388 243 15 68 433 78 435 1.18e-19 90.9
Msa0474060 MtrunA17_Chr8g0371351 26.790 377 223 16 84 431 97 449 1.55e-19 90.9
Msa0474060 MtrunA17_Chr2g0312941 27.114 402 206 22 87 433 88 457 1.01e-18 88.2
Msa0474060 MtrunA17_Chr7g0275731 27.128 376 216 17 85 432 140 485 1.33e-18 87.8
Msa0474060 MtrunA17_Chr4g0023351 31.633 196 110 10 58 245 37 216 3.14e-17 82.0
Msa0474060 MtrunA17_Chr2g0308001 23.227 409 253 15 68 441 36 418 2.53e-16 80.9
Msa0474060 MtrunA17_Chr4g0001991 26.133 375 223 20 88 434 172 520 3.95e-16 80.5
Msa0474060 MtrunA17_Chr5g0442921 25.397 441 261 16 34 434 144 556 5.88e-16 80.1
Msa0474060 MtrunA17_Chr6g0487471 27.018 285 165 9 85 338 85 357 2.09e-15 77.8
Msa0474060 MtrunA17_Chr8g0390761 30.357 168 98 6 89 252 119 271 3.42e-15 77.4
Msa0474060 MtrunA17_Chr1g0212321 31.757 148 85 6 85 228 145 280 1.37e-14 75.5
Msa0474060 MtrunA17_Chr5g0395871 25.266 376 221 18 85 431 80 424 2.20e-14 74.7
Msa0474060 MtrunA17_Chr6g0457401 26.384 307 168 13 86 355 91 376 6.58e-14 73.2
Msa0474060 MtrunA17_Chr3g0095891 23.904 456 256 21 31 434 45 461 7.13e-14 73.2
Msa0474060 MtrunA17_Chr2g0291201 23.936 376 234 15 85 432 101 452 7.32e-14 73.2
Msa0474060 MtrunA17_Chr6g0484901 23.901 364 221 17 91 431 161 491 1.48e-13 72.4
Msa0474060 MtrunA17_Chr1g0179091 23.174 397 224 16 64 433 26 368 3.78e-13 70.5
Msa0474060 MtrunA17_Chr1g0210201 25.000 372 220 20 85 431 130 467 4.19e-12 67.8
Msa0474060 MtrunA17_Chr5g0434441 24.352 386 229 13 89 436 71 431 4.35e-12 67.8
Msa0474060 MtrunA17_Chr3g0099901 23.467 375 243 14 79 432 135 486 8.73e-12 67.0
Msa0474060 MtrunA17_Chr7g0239001 22.646 393 231 18 89 434 62 428 3.23e-11 65.1
Msa0474060 MtrunA17_Chr3g0099891 24.734 376 233 18 77 431 108 454 3.91e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474060 AT4G33490.2 64.948 388 128 4 63 442 35 422 0.0 533
Msa0474060 AT4G33490.1 67.045 352 108 4 63 406 32 383 2.32e-174 494
Msa0474060 AT1G44130.1 51.596 376 174 5 69 437 31 405 1.12e-141 411
Msa0474060 AT1G77480.2 47.368 399 200 5 49 438 29 426 2.55e-131 386
Msa0474060 AT1G77480.1 47.222 396 199 5 49 435 29 423 1.98e-129 382
Msa0474060 AT1G49050.1 44.332 397 191 13 71 442 187 578 2.64e-94 296
Msa0474060 AT1G49050.2 43.045 381 189 12 86 442 29 405 6.40e-88 274
Msa0474060 AT1G49050.3 43.173 271 131 8 71 320 187 455 7.59e-59 200
Msa0474060 AT1G65240.1 28.784 403 235 14 68 439 53 434 9.84e-38 143
Msa0474060 AT2G36670.2 26.585 410 239 15 70 442 81 465 3.90e-34 134
Msa0474060 AT5G22850.1 26.382 398 240 15 70 432 62 441 8.72e-34 132
Msa0474060 AT5G36260.1 27.604 384 233 12 84 439 75 441 1.31e-32 129
Msa0474060 AT2G36670.1 26.265 415 239 16 70 442 81 470 7.66e-32 127
Msa0474060 AT3G02740.1 28.822 399 236 16 71 439 67 447 1.89e-31 126
Msa0474060 AT5G43100.2 27.568 370 225 16 85 434 74 420 7.55e-31 124
Msa0474060 AT2G36670.4 25.765 392 231 14 86 442 33 399 1.63e-30 122
Msa0474060 AT2G36670.3 25.765 392 231 14 86 442 33 399 1.63e-30 122
Msa0474060 AT1G05840.1 26.972 393 225 13 85 439 78 446 2.28e-30 123
Msa0474060 AT5G43100.1 27.568 370 225 16 85 434 74 420 3.51e-30 124
Msa0474060 AT3G02740.2 28.682 387 230 15 81 439 4 372 3.72e-30 121
Msa0474060 AT1G08210.1 26.987 478 276 18 7 440 9 457 8.36e-29 118
Msa0474060 AT1G08210.4 26.987 478 276 18 7 440 43 491 1.14e-28 118
Msa0474060 AT1G08210.3 26.987 478 276 18 7 440 57 505 1.57e-28 118
Msa0474060 AT3G50050.1 27.027 407 254 16 51 434 53 439 6.34e-27 114
Msa0474060 AT2G17760.1 29.708 377 215 19 81 431 97 449 2.66e-26 111
Msa0474060 AT1G08210.2 25.896 502 278 19 7 440 9 484 3.48e-24 105
Msa0474060 AT3G25700.1 26.667 390 237 17 77 431 74 449 5.75e-22 98.2
Msa0474060 AT4G35880.1 26.702 382 225 15 84 437 103 457 2.31e-21 97.1
Msa0474060 AT5G10080.1 26.720 378 216 14 91 433 104 455 2.45e-21 97.1
Msa0474060 AT5G10770.1 26.203 374 233 15 79 432 124 474 6.81e-21 95.1
Msa0474060 AT3G51330.1 27.027 370 234 16 84 431 98 453 2.09e-20 94.0
Msa0474060 AT3G51330.3 26.954 371 235 16 84 432 98 454 2.43e-20 93.6
Msa0474060 AT3G51350.1 27.224 371 226 16 86 431 101 452 3.87e-20 93.2
Msa0474060 AT2G28010.1 30.451 266 142 12 58 304 39 280 4.58e-19 89.0
Msa0474060 AT1G66180.1 23.409 440 260 17 27 434 35 429 1.89e-17 84.7
Msa0474060 AT1G64830.1 29.195 298 172 15 85 355 84 369 1.05e-16 82.4
Msa0474060 AT3G51340.2 26.486 370 229 16 84 431 99 447 5.78e-16 80.5
Msa0474060 AT4G35880.2 26.163 344 204 14 84 399 103 424 9.94e-16 79.3
Msa0474060 AT3G18490.1 23.958 384 228 20 77 431 152 500 1.04e-14 76.6
Msa0474060 AT4G12920.1 25.490 255 167 11 87 329 58 301 1.25e-14 75.9
Msa0474060 AT3G51340.1 25.789 380 231 17 84 431 99 459 2.27e-14 75.5
Msa0474060 AT5G37540.1 24.163 418 264 15 52 435 44 442 3.05e-14 74.7
Msa0474060 AT2G28040.2 24.524 420 247 20 34 432 12 382 4.30e-14 73.9
Msa0474060 AT2G28040.1 24.372 398 230 20 66 434 38 393 2.58e-13 71.6
Msa0474060 AT4G30030.1 33.113 151 90 7 83 230 75 217 2.74e-13 71.6
Msa0474060 AT2G23945.1 27.046 281 166 12 86 341 95 361 5.01e-13 71.2
Msa0474060 AT1G25510.1 23.360 381 231 16 77 431 138 483 2.24e-12 69.3
Msa0474060 AT5G10760.1 26.357 258 152 10 85 321 130 370 6.38e-12 67.8
Msa0474060 AT3G20015.1 31.771 192 110 9 85 269 129 306 1.02e-11 67.0
Msa0474060 AT5G02190.1 23.529 391 216 23 96 432 82 443 5.28e-11 64.7
Msa0474060 AT2G42980.1 22.193 383 246 14 85 431 158 524 5.53e-11 65.1
Msa0474060 AT3G25700.2 32.812 128 75 6 85 202 82 208 7.49e-11 63.9
Msa0474060 AT2G35615.1 21.594 389 237 13 85 432 83 444 8.40e-11 64.3

Find 130 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGACATCTTTGGATTT+TGG 0.149011 3_3:+76869789 None:intergenic
TAATCAAATGCTGACATCTT+TGG 0.242452 3_3:+76869782 None:intergenic
CTTATCAAGCACTAATTTCT+TGG 0.254030 3_3:-76870654 Msa0474060:CDS
ACTTTATAGAACACGATATA+TGG 0.292279 3_3:-76869691 Msa0474060:three_prime_UTR
AATCATGAAGTCAGGGAAAT+TGG 0.293581 3_3:-76873213 Msa0474060:exon
GCTTTCGATCTTCCACTTCC+TGG 0.304667 3_3:+76870286 None:intergenic
GGCGGAGGATACATCTTCTT+TGG 0.305148 3_3:-76870929 Msa0474060:CDS
AGAGGGAGAGTTTGGTCTTC+AGG 0.323198 3_3:+76870385 None:intergenic
AGACACCACATCCGCTTTAC+CGG 0.336790 3_3:-76871936 Msa0474060:CDS
TGGTTCATCGGTCGTGTTCC+CGG 0.337316 3_3:-76873003 Msa0474060:CDS
GTGTCAATATCAAGAAAATA+TGG 0.341260 3_3:+76872197 None:intergenic
GACAATGAAAAGCAGTTGAT+AGG 0.341276 3_3:-76869840 Msa0474060:CDS
CTTCAGGAGGGATTTCGAAT+TGG 0.346518 3_3:+76870263 None:intergenic
TTCTTGGAGGGAAGAGGACT+GGG 0.346941 3_3:-76870738 Msa0474060:CDS
CGCCATTCCTACCTCCGATT+AGG 0.353194 3_3:+76870041 None:intergenic
TAGTTTGATTGCACGGCATT+GGG 0.360844 3_3:-76869522 Msa0474060:three_prime_UTR
TTGGGGATTTCATTTAGAAT+TGG 0.362523 3_3:-76869504 Msa0474060:three_prime_UTR
GGAGGGAAGAGGACTGGGTT+TGG 0.363106 3_3:-76870733 Msa0474060:CDS
ACCAACATAGAGGGAGAGTT+TGG 0.364966 3_3:+76870377 None:intergenic
TCTACTTGTTTAGCTTGGTT+TGG 0.365632 3_3:-76873158 Msa0474060:CDS
TCGGTCGTGTTCCCGGTTCA+TGG 0.368069 3_3:-76872996 Msa0474060:CDS
TCTTCCTACCACCCCGTAGA+TGG 0.373727 3_3:-76871049 Msa0474060:CDS
ACTTCATATACACTTCTAAA+AGG 0.375337 3_3:+76870343 None:intergenic
TTCAGGAGGGATTTCGAATT+GGG 0.375689 3_3:+76870264 None:intergenic
GGATAAACATTTCCATGAAC+CGG 0.391556 3_3:+76872984 None:intergenic
TAACATGATATGTTGTTATA+TGG 0.393852 3_3:+76869543 None:intergenic
CCTGGGAAGCTAAGTGCAAT+AGG 0.403734 3_3:+76870304 None:intergenic
GCCTTGTTCGCGTTGCTCTC+AGG 0.405030 3_3:-76872141 Msa0474060:intron
TTATCAAGCACTAATTTCTT+GGG 0.408330 3_3:-76870653 Msa0474060:intron
GATATAATCAGATATGCTTC+AGG 0.410114 3_3:+76870247 None:intergenic
ATGGAATGCTTGGCCTTGGC+AGG 0.412501 3_3:-76871030 Msa0474060:CDS
CTCAGCAAACATTACTCAGC+AGG 0.412530 3_3:-76870775 Msa0474060:intron
CATGGAAATGTTTATCCTGT+TGG 0.413700 3_3:-76872978 Msa0474060:CDS
ATGGAAATGTTTATCCTGTT+GGG 0.418408 3_3:-76872977 Msa0474060:intron
GTTCCTCTACTTGTTTAGCT+TGG 0.418515 3_3:-76873163 Msa0474060:CDS
CATCACATTGAAGCCATGTT+AGG 0.420882 3_3:+76872165 None:intergenic
CTTAAAGTTCGTATGGCACT+TGG 0.422527 3_3:-76871733 Msa0474060:CDS
AATAGAGAAATCATGAAGTC+AGG 0.426807 3_3:-76873221 Msa0474060:exon
ATTTCAAGTTCAAGTGCAAA+TGG 0.428003 3_3:-76873107 Msa0474060:CDS
CTTTCGATCTTCCACTTCCT+GGG 0.434979 3_3:+76870287 None:intergenic
TATGTTCTCAACTTTACAAA+TGG 0.435278 3_3:-76871763 Msa0474060:CDS
ACGGGGTGGTAGGAAGAATC+TGG 0.438753 3_3:+76871055 None:intergenic
TGTTTATGATTCTTCTCGAT+TGG 0.447111 3_3:-76870903 Msa0474060:CDS
GTTCTTGGAGGGAAGAGGAC+TGG 0.447212 3_3:-76870739 Msa0474060:CDS
TTAGTTTGATTGCACGGCAT+TGG 0.449305 3_3:-76869523 Msa0474060:three_prime_UTR
GATATCACAGCTGAATGGTC+AGG 0.452709 3_3:-76870993 Msa0474060:CDS
ATGATTCTTCTCGATTGGCT+TGG 0.455289 3_3:-76870898 Msa0474060:CDS
CCTATTGCACTTAGCTTCCC+AGG 0.459180 3_3:-76870304 Msa0474060:CDS
ATAATGTGACTATCAACATT+GGG 0.460427 3_3:-76872232 Msa0474060:CDS
AACATGGGAAATGTTTGCTT+GGG 0.462552 3_3:-76870103 Msa0474060:CDS
ATATCAAGAAAATATGGCCT+TGG 0.468926 3_3:+76872203 None:intergenic
GTGCATAGTATATTGTTAAG+TGG 0.474103 3_3:-76869627 Msa0474060:three_prime_UTR
GCACTTAGCTTCCCAGGAAG+TGG 0.475231 3_3:-76870298 Msa0474060:CDS
GCACAGAGGGGATGCCTGCA+TGG 0.478162 3_3:+76871895 None:intergenic
GTAGATGGAATGCTTGGCCT+TGG 0.479671 3_3:-76871034 Msa0474060:CDS
GAACATGGGAAATGTTTGCT+TGG 0.481022 3_3:-76870104 Msa0474060:CDS
GTGGAAGATGTAAACCTAAT+CGG 0.481109 3_3:-76870055 Msa0474060:CDS
ACTCTCCCTCTATGTTGGTA+TGG 0.486306 3_3:-76870373 Msa0474060:CDS
ATATATCGTGTTCTATAAAG+TGG 0.488423 3_3:+76869693 None:intergenic
ATTCTAGACGGCTCTGAAGT+AGG 0.488461 3_3:-76870079 Msa0474060:CDS
AAGGCCAAGCATTCCATCTA+CGG 0.491428 3_3:+76871036 None:intergenic
TCAAGAAAATATGGCCTTGG+TGG 0.495645 3_3:+76872206 None:intergenic
CACCCCGTAGATGGAATGCT+TGG 0.499828 3_3:-76871040 Msa0474060:CDS
ACGATATATGGTTGTATGAA+AGG 0.500199 3_3:-76869679 Msa0474060:three_prime_UTR
ATCATGTTAGTTTGATTGCA+CGG 0.504799 3_3:-76869529 Msa0474060:three_prime_UTR
TACCATCACTTTGTCTAGCA+TGG 0.505530 3_3:+76869866 None:intergenic
CGAAAACGATTCAAGAATGA+AGG 0.508091 3_3:+76873029 None:intergenic
AGGCCAAGCATTCCATCTAC+GGG 0.508129 3_3:+76871037 None:intergenic
GTGCCATACGAACTTTAAGT+TGG 0.511112 3_3:+76871737 None:intergenic
GCAGATCATTACTCATCTCT+TGG 0.518717 3_3:-76871805 Msa0474060:CDS
TATAATGTGACTATCAACAT+TGG 0.520628 3_3:-76872233 Msa0474060:CDS
CTAGGCCGGTAAAGCGGATG+TGG 0.520658 3_3:+76871931 None:intergenic
AGATAATCTAAGAGTAATGC+AGG 0.524455 3_3:-76869471 None:intergenic
TATATTGTTAAGTGGTATAG+AGG 0.525590 3_3:-76869619 Msa0474060:three_prime_UTR
ACAATGAAAAGCAGTTGATA+GGG 0.527865 3_3:-76869839 Msa0474060:CDS
GTGATGCACGGATGCACAGA+GGG 0.529685 3_3:+76871882 None:intergenic
GGAGCTGAACTTGTTCTTGG+AGG 0.531520 3_3:-76870751 Msa0474060:CDS
GATGACGACGACGACGATGA+AGG 0.535925 3_3:+76873056 None:intergenic
CATGGGACTAAGTCATTGCT+AGG 0.535975 3_3:+76871913 None:intergenic
AACTTGTTCTTGGAGGGAAG+AGG 0.539126 3_3:-76870744 Msa0474060:CDS
TGGAATGCTTGGCCTTGGCA+GGG 0.541186 3_3:-76871029 Msa0474060:CDS
GGAATGCTTGGCCTTGGCAG+GGG 0.545359 3_3:-76871028 Msa0474060:CDS
GAGCTGAACTTGTTCTTGGA+GGG 0.545394 3_3:-76870750 Msa0474060:CDS
CATTCCATCTACGGGGTGGT+AGG 0.549212 3_3:+76871045 None:intergenic
AGTTTGATTGCACGGCATTG+GGG 0.551103 3_3:-76869521 Msa0474060:three_prime_UTR
ATATCACAGCTGAATGGTCA+GGG 0.557396 3_3:-76870992 Msa0474060:CDS
CTGTGCATCCGTGCATCACA+CGG 0.557548 3_3:-76871878 Msa0474060:CDS
TCAGCAAACATTACTCAGCA+GGG 0.557841 3_3:-76870774 Msa0474060:intron
ATAGAGAAATCATGAAGTCA+GGG 0.558907 3_3:-76873220 Msa0474060:exon
AGGTTGTTCATATGAAAGAA+TGG 0.559496 3_3:+76873076 None:intergenic
CACAGAGGGGATGCCTGCAT+GGG 0.564456 3_3:+76871896 None:intergenic
GGACTAAGTCATTGCTAGGC+CGG 0.569566 3_3:+76871917 None:intergenic
GTTTGCTTGGGCATTCTAGA+CGG 0.569919 3_3:-76870091 Msa0474060:CDS
GTAGTTATCCGTGTGATGCA+CGG 0.570573 3_3:+76871870 None:intergenic
ACCAAACTCTCCCTCTATGT+TGG 0.574564 3_3:-76870378 Msa0474060:CDS
TTAAAGTTCGTATGGCACTT+GGG 0.575859 3_3:-76871732 Msa0474060:intron
ACACGGGTAGCGACCTAACA+TGG 0.578697 3_3:-76872178 Msa0474060:CDS
ACCTGAGAGCAACGCGAACA+AGG 0.580548 3_3:+76872140 None:intergenic
GGTTTAGTGAGAAATGTCGT+TGG 0.585900 3_3:-76870971 Msa0474060:CDS
GCAATGACTTAGTCCCATGC+AGG 0.592637 3_3:-76871909 Msa0474060:CDS
CAAGAAAATATGGCCTTGGT+GGG 0.593840 3_3:+76872207 None:intergenic
TTTCCATATGTAGTTGACGA+AGG 0.600659 3_3:-76870437 Msa0474060:intron
AGCTTGATATCACAGCTGAA+TGG 0.601370 3_3:-76870998 Msa0474060:CDS
TGTTTGAGTGCACAAGGCGG+AGG 0.601478 3_3:-76870944 Msa0474060:CDS
AGTCCAACTTAAAGTTCGTA+TGG 0.601835 3_3:-76871740 Msa0474060:CDS
ATTCAGCTGTGATATCAAGC+TGG 0.604358 3_3:+76871000 None:intergenic
AGACGGCTCTGAAGTAGGAG+TGG 0.605898 3_3:-76870074 Msa0474060:CDS
AAACCAAGCTAAACAAGTAG+AGG 0.606468 3_3:+76873160 None:intergenic
TAGTTGACGAAGGAATTAGC+TGG 0.606843 3_3:-76870427 Msa0474060:CDS
AAATTGTTCTTCCAGAACAT+GGG 0.610504 3_3:-76870118 Msa0474060:intron
TATATCGTGTTCTATAAAGT+GGG 0.612282 3_3:+76869694 None:intergenic
ATAATCAGATATGCTTCAGG+AGG 0.624631 3_3:+76870250 None:intergenic
GGACACTGTTTGAGTGCACA+AGG 0.625207 3_3:-76870950 Msa0474060:CDS
TTTGATTACGAAAGATACAT+CGG 0.632392 3_3:-76869767 Msa0474060:exon
ATGAAAAGCAGTTGATAGGG+TGG 0.632654 3_3:-76869836 Msa0474060:CDS
ATCCATGCTAGACAAAGTGA+TGG 0.638414 3_3:-76869868 Msa0474060:CDS
TCAACATTGGGTACCCACCA+AGG 0.642379 3_3:-76872220 Msa0474060:CDS
GATAAACATTTCCATGAACC+GGG 0.645327 3_3:+76872985 None:intergenic
AGAAAACTGAGACTATGTTG+TGG 0.653321 3_3:+76873281 None:intergenic
AGCAAACATTACTCAGCAGG+GGG 0.654958 3_3:-76870772 Msa0474060:CDS
CAGCAAACATTACTCAGCAG+GGG 0.656453 3_3:-76870773 Msa0474060:CDS
TCATTGCTAGGCCGGTAAAG+CGG 0.656612 3_3:+76871925 None:intergenic
TAATCAGATATGCTTCAGGA+GGG 0.677945 3_3:+76870251 None:intergenic
ATGTAAACTGATTAACTGAG+TGG 0.681726 3_3:+76869744 None:intergenic
GAAGATGTAAACCTAATCGG+AGG 0.690670 3_3:-76870052 Msa0474060:intron
CAAGCATTCCATCTACGGGG+TGG 0.700753 3_3:+76871041 None:intergenic
TGTGATGCACGGATGCACAG+AGG 0.715403 3_3:+76871881 None:intergenic
CACTGTTTGAGTGCACAAGG+CGG 0.732542 3_3:-76870947 Msa0474060:CDS
GGCCAAGCATTCCATCTACG+GGG 0.749113 3_3:+76871038 None:intergenic
TGATGCACGGATGCACAGAG+GGG 0.795188 3_3:+76871883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATTCAAATTACTTT+AGG + chr3_3:76869983-76870002 None:intergenic 10.0%
!! AATAATAAAACATCTTTATA+AGG - chr3_3:76869994-76870013 Msa0474060:intron 10.0%
!!! CTTTTTTTTTAATATATAGA+TGG - chr3_3:76870075-76870094 Msa0474060:CDS 10.0%
!! TAAATACTATTATTAGTTAA+TGG + chr3_3:76871408-76871427 None:intergenic 10.0%
!! AAAAAAAAAGCTTTCAATTT+GGG + chr3_3:76870065-76870084 None:intergenic 15.0%
!! TAAAAAAAAAGCTTTCAATT+TGG + chr3_3:76870066-76870085 None:intergenic 15.0%
!! TAAGTATAATTTATTCTGTT+TGG - chr3_3:76870234-76870253 Msa0474060:intron 15.0%
!!! TATTGAAGATTAATTTTGAT+AGG + chr3_3:76870814-76870833 None:intergenic 15.0%
!! AAAGTTTCCAATTTATATAT+GGG - chr3_3:76871355-76871374 Msa0474060:intron 15.0%
!! ATTATTAGTTAATGGTATTA+TGG + chr3_3:76871400-76871419 None:intergenic 15.0%
!! CTAATAATAGTATTTACTAA+TGG - chr3_3:76871412-76871431 Msa0474060:intron 15.0%
!!! TGATTTTTACTTCTTAATAA+AGG + chr3_3:76871647-76871666 None:intergenic 15.0%
!! TTTATTAAGAAGTAAAAATC+AGG - chr3_3:76871646-76871665 Msa0474060:intron 15.0%
!! AACAAAGAGAATGTAAAAAA+AGG + chr3_3:76869846-76869865 None:intergenic 20.0%
!!! TTCATTTTTTTTGTTTCCTT+CGG - chr3_3:76869867-76869886 Msa0474060:CDS 20.0%
!! TAAAATAACAGAACAAAACA+TGG + chr3_3:76869955-76869974 None:intergenic 20.0%
!! ATTATTCAAATTACTTTAGG+AGG + chr3_3:76869980-76869999 None:intergenic 20.0%
!! ACAAAGAAAAACATGATTAT+GGG + chr3_3:76870032-76870051 None:intergenic 20.0%
!!! AATTTTGTCACCTTAAAAAA+TGG + chr3_3:76870170-76870189 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG - chr3_3:76870204-76870223 Msa0474060:intron 20.0%
!! AATCAATTGTAAAAACCAAT+TGG + chr3_3:76870398-76870417 None:intergenic 20.0%
!! GTGATTGAACAATAAATTTA+AGG + chr3_3:76870426-76870445 None:intergenic 20.0%
!!! CATTCAAAATCATTTTTTGT+TGG - chr3_3:76870462-76870481 Msa0474060:intron 20.0%
!!! ATATTTTCTTGATATTGACA+CGG - chr3_3:76870586-76870605 Msa0474060:intron 20.0%
!! GAAAGTTTCCAATTTATATA+TGG - chr3_3:76871354-76871373 Msa0474060:intron 20.0%
!! AAGTTTCCAATTTATATATG+GGG - chr3_3:76871356-76871375 Msa0474060:intron 20.0%
!! TAAACTACTATTCTAAGTTT+GGG - chr3_3:76871454-76871473 Msa0474060:intron 20.0%
!! TTAATAAAGGATTAAGTGTA+TGG + chr3_3:76871634-76871653 None:intergenic 20.0%
!! AACTACATATGGAAATAAAA+CGG + chr3_3:76872339-76872358 None:intergenic 20.0%
!! AAAAGATAAAGCAAAAAAAG+TGG + chr3_3:76872831-76872850 None:intergenic 20.0%
!! TAACATGATATGTTGTTATA+TGG + chr3_3:76873241-76873260 None:intergenic 20.0%
! GACAAAGAAAAACATGATTA+TGG + chr3_3:76870033-76870052 None:intergenic 25.0%
!! AATCATATCAAGTGATTTTG+TGG - chr3_3:76870112-76870131 Msa0474060:intron 25.0%
! AACATACACATAAATTGGAA+CGG + chr3_3:76870140-76870159 None:intergenic 25.0%
! CCTATAACATACACATAAAT+TGG + chr3_3:76870145-76870164 None:intergenic 25.0%
! CCAATTTATGTGTATGTTAT+AGG - chr3_3:76870142-76870161 Msa0474060:intron 25.0%
!!! GTTATAGGTTCCATTTTTTA+AGG - chr3_3:76870157-76870176 Msa0474060:intron 25.0%
!!! AAGGTGACAAAATTGATTTT+AGG - chr3_3:76870176-76870195 Msa0474060:intron 25.0%
!!! AGGTGACAAAATTGATTTTA+GGG - chr3_3:76870177-76870196 Msa0474060:intron 25.0%
! TATAACATAAAGCTAGAAGT+TGG - chr3_3:76870271-76870290 Msa0474060:CDS 25.0%
!!! TCAAAATCATTTTTTGTTGG+CGG - chr3_3:76870465-76870484 Msa0474060:intron 25.0%
! TATAATGTGACTATCAACAT+TGG - chr3_3:76870548-76870567 Msa0474060:intron 25.0%
! ATAATGTGACTATCAACATT+GGG - chr3_3:76870549-76870568 Msa0474060:intron 25.0%
! GTGTCAATATCAAGAAAATA+TGG + chr3_3:76870587-76870606 None:intergenic 25.0%
!! TATTTTCTTGATATTGACAC+GGG - chr3_3:76870587-76870606 Msa0474060:intron 25.0%
!!! TTCAAAGTTGTTAATTTGCT+AGG + chr3_3:76870706-76870725 None:intergenic 25.0%
! CTAATCTCATTTCAAGAAAA+AGG + chr3_3:76870737-76870756 None:intergenic 25.0%
! TATGTTCTCAACTTTACAAA+TGG - chr3_3:76871018-76871037 Msa0474060:CDS 25.0%
!!! TTTGTTTTCATAAACTATCC+CGG - chr3_3:76871259-76871278 Msa0474060:intron 25.0%
!!! AACTTTCACTTTAAAATCTC+CGG + chr3_3:76871341-76871360 None:intergenic 25.0%
! GTTTAGAAATAAGAACTTGA+TGG + chr3_3:76871439-76871458 None:intergenic 25.0%
! CTAAACTACTATTCTAAGTT+TGG - chr3_3:76871453-76871472 Msa0474060:intron 25.0%
! TTATCAAGCACTAATTTCTT+GGG - chr3_3:76872128-76872147 Msa0474060:intron 25.0%
!! TTTAAAATGCTTGAAATTCG+AGG + chr3_3:76872180-76872199 None:intergenic 25.0%
! TCACTAATACGAGAAAATAT+TGG - chr3_3:76872291-76872310 Msa0474060:intron 25.0%
! ACTTCATATACACTTCTAAA+AGG + chr3_3:76872441-76872460 None:intergenic 25.0%
!! AATTGATAATATCCGTTAAC+AGG + chr3_3:76872795-76872814 None:intergenic 25.0%
! TTTGATTACGAAAGATACAT+CGG - chr3_3:76873014-76873033 Msa0474060:CDS 25.0%
! TATATCGTGTTCTATAAAGT+GGG + chr3_3:76873090-76873109 None:intergenic 25.0%
! ATATATCGTGTTCTATAAAG+TGG + chr3_3:76873091-76873110 None:intergenic 25.0%
! ACTTTATAGAACACGATATA+TGG - chr3_3:76873090-76873109 Msa0474060:CDS 25.0%
! TATATTGTTAAGTGGTATAG+AGG - chr3_3:76873162-76873181 Msa0474060:CDS 25.0%
AATAGAGAAATCATGAAGTC+AGG - chr3_3:76869560-76869579 Msa0474060:three_prime_UTR 30.0%
ATAGAGAAATCATGAAGTCA+GGG - chr3_3:76869561-76869580 Msa0474060:three_prime_UTR 30.0%
!! ATTTCAAGTTCAAGTGCAAA+TGG - chr3_3:76869674-76869693 Msa0474060:three_prime_UTR 30.0%
AGGTTGTTCATATGAAAGAA+TGG + chr3_3:76869708-76869727 None:intergenic 30.0%
ATGGAAATGTTTATCCTGTT+GGG - chr3_3:76869804-76869823 Msa0474060:CDS 30.0%
ATAACAGAACAAAACATGGA+GGG + chr3_3:76869951-76869970 None:intergenic 30.0%
AATAACAGAACAAAACATGG+AGG + chr3_3:76869952-76869971 None:intergenic 30.0%
AGAAAAACATGATTATGGGA+AGG + chr3_3:76870028-76870047 None:intergenic 30.0%
ACATACACATAAATTGGAAC+GGG + chr3_3:76870139-76870158 None:intergenic 30.0%
!! GGTGACAAAATTGATTTTAG+GGG - chr3_3:76870178-76870197 Msa0474060:intron 30.0%
!! TTGGTGCATGTTTTAAATTG+CGG - chr3_3:76870290-76870309 Msa0474060:CDS 30.0%
CCTGCATATGTTAAAAGTAA+GGG + chr3_3:76870525-76870544 None:intergenic 30.0%
ACCTGCATATGTTAAAAGTA+AGG + chr3_3:76870526-76870545 None:intergenic 30.0%
ATATCAAGAAAATATGGCCT+TGG + chr3_3:76870581-76870600 None:intergenic 30.0%
! TGCTAGGTAATTTTGAATGT+TGG + chr3_3:76870690-76870709 None:intergenic 30.0%
CAGACATACATATATCTATC+TGG + chr3_3:76870768-76870787 None:intergenic 30.0%
!!! TTTAGGTTTTTAGTCCTAGT+TGG - chr3_3:76871139-76871158 Msa0474060:intron 30.0%
! CTTATTTCCATTATTTCTCC+GGG + chr3_3:76871280-76871299 None:intergenic 30.0%
! CCTTATTTCCATTATTTCTC+CGG + chr3_3:76871281-76871300 None:intergenic 30.0%
TGTAAGCCCCATATATAAAT+TGG + chr3_3:76871365-76871384 None:intergenic 30.0%
TTGAATCTATCTACTGACAT+AGG + chr3_3:76871515-76871534 None:intergenic 30.0%
AGAACATACACAGAGATATT+TGG + chr3_3:76871548-76871567 None:intergenic 30.0%
AAATATCTCTGTGTATGTTC+TGG - chr3_3:76871547-76871566 Msa0474060:intron 30.0%
!!! GCTATCTAGTACAACTTTTT+TGG - chr3_3:76871668-76871687 Msa0474060:intron 30.0%
!! TTGGTTATTTTATGCAGATG+CGG - chr3_3:76871687-76871706 Msa0474060:intron 30.0%
TGTTTATGATTCTTCTCGAT+TGG - chr3_3:76871878-76871897 Msa0474060:CDS 30.0%
CTTATCAAGCACTAATTTCT+TGG - chr3_3:76872127-76872146 Msa0474060:intron 30.0%
! TTTTTCCATACCAACATAGA+GGG + chr3_3:76872416-76872435 None:intergenic 30.0%
GATATAATCAGATATGCTTC+AGG + chr3_3:76872537-76872556 None:intergenic 30.0%
! CTTGAAGAAAGTGATTAGTT+AGG + chr3_3:76872572-76872591 None:intergenic 30.0%
AAATTGTTCTTCCAGAACAT+GGG - chr3_3:76872663-76872682 Msa0474060:intron 30.0%
! ACAATGAAAAGCAGTTGATA+GGG - chr3_3:76872942-76872961 Msa0474060:intron 30.0%
TAATCAAATGCTGACATCTT+TGG + chr3_3:76873002-76873021 None:intergenic 30.0%
ATGTAAACTGATTAACTGAG+TGG + chr3_3:76873040-76873059 None:intergenic 30.0%
ACGATATATGGTTGTATGAA+AGG - chr3_3:76873102-76873121 Msa0474060:CDS 30.0%
GTGCATAGTATATTGTTAAG+TGG - chr3_3:76873154-76873173 Msa0474060:CDS 30.0%
! ATCATGTTAGTTTGATTGCA+CGG - chr3_3:76873252-76873271 Msa0474060:five_prime_UTR 30.0%
! TTGGGGATTTCATTTAGAAT+TGG - chr3_3:76873277-76873296 Msa0474060:five_prime_UTR 30.0%
AGAAAACTGAGACTATGTTG+TGG + chr3_3:76869503-76869522 None:intergenic 35.0%
AATCATGAAGTCAGGGAAAT+TGG - chr3_3:76869568-76869587 Msa0474060:three_prime_UTR 35.0%
AAACCAAGCTAAACAAGTAG+AGG + chr3_3:76869624-76869643 None:intergenic 35.0%
!! TCTACTTGTTTAGCTTGGTT+TGG - chr3_3:76869623-76869642 Msa0474060:three_prime_UTR 35.0%
CGAAAACGATTCAAGAATGA+AGG + chr3_3:76869755-76869774 None:intergenic 35.0%
! TTCTTGAATCGTTTTCGTTC+TGG - chr3_3:76869758-76869777 Msa0474060:three_prime_UTR 35.0%
GATAAACATTTCCATGAACC+GGG + chr3_3:76869799-76869818 None:intergenic 35.0%
GGATAAACATTTCCATGAAC+CGG + chr3_3:76869800-76869819 None:intergenic 35.0%
CATGGAAATGTTTATCCTGT+TGG - chr3_3:76869803-76869822 Msa0474060:CDS 35.0%
TTTATGCCTTTCTTTCTCCT+AGG - chr3_3:76869896-76869915 Msa0474060:intron 35.0%
! TCTTCATGCCTTTTCCTATT+TGG - chr3_3:76869925-76869944 Msa0474060:intron 35.0%
CATTGAGTTTCTCGAAATCA+TGG + chr3_3:76870359-76870378 None:intergenic 35.0%
!! CCCTTACTTTTAACATATGC+AGG - chr3_3:76870522-76870541 Msa0474060:intron 35.0%
AGTCCAACTTAAAGTTCGTA+TGG - chr3_3:76871041-76871060 Msa0474060:CDS 35.0%
TTAAAGTTCGTATGGCACTT+GGG - chr3_3:76871049-76871068 Msa0474060:CDS 35.0%
GGGTATGTAAAGCCTATTTA+AGG + chr3_3:76871103-76871122 None:intergenic 35.0%
TAAAGAAGTGAGAGTGGTAT+GGG + chr3_3:76871123-76871142 None:intergenic 35.0%
AAAACCTAAAGAAGTGAGAG+TGG + chr3_3:76871129-76871148 None:intergenic 35.0%
AAACTATCCCGGAGAAATAA+TGG - chr3_3:76871270-76871289 Msa0474060:intron 35.0%
! CCGGAGAAATAATGGAAATA+AGG - chr3_3:76871278-76871297 Msa0474060:intron 35.0%
ACTACTATTCTAAGTTTGGG+TGG - chr3_3:76871457-76871476 Msa0474060:intron 35.0%
CTACTATTCTAAGTTTGGGT+GGG - chr3_3:76871458-76871477 Msa0474060:intron 35.0%
!! TATTGGCTCATTGCTTAACA+CGG - chr3_3:76872308-76872327 Msa0474060:intron 35.0%
TTTCCATATGTAGTTGACGA+AGG - chr3_3:76872344-76872363 Msa0474060:intron 35.0%
ATTCCTTCGTCAACTACATA+TGG + chr3_3:76872350-76872369 None:intergenic 35.0%
! TCTTCAGGTGCTTCTTTTAT+GGG + chr3_3:76872384-76872403 None:intergenic 35.0%
! CTTTTTCCATACCAACATAG+AGG + chr3_3:76872417-76872436 None:intergenic 35.0%
TAATCAGATATGCTTCAGGA+GGG + chr3_3:76872533-76872552 None:intergenic 35.0%
ATAATCAGATATGCTTCAGG+AGG + chr3_3:76872534-76872553 None:intergenic 35.0%
CAAATTGTTCTTCCAGAACA+TGG - chr3_3:76872662-76872681 Msa0474060:intron 35.0%
AACATGGGAAATGTTTGCTT+GGG - chr3_3:76872678-76872697 Msa0474060:intron 35.0%
GTGGAAGATGTAAACCTAAT+CGG - chr3_3:76872726-76872745 Msa0474060:intron 35.0%
! GCATAGTTCATCAAGAGTTT+TGG + chr3_3:76872856-76872875 None:intergenic 35.0%
GACAATGAAAAGCAGTTGAT+AGG - chr3_3:76872941-76872960 Msa0474060:intron 35.0%
!!! CATCTTTGGATTTTGGAACT+CGG + chr3_3:76872988-76873007 None:intergenic 35.0%
! ATGCTGACATCTTTGGATTT+TGG + chr3_3:76872995-76873014 None:intergenic 35.0%
GTTCCTCTACTTGTTTAGCT+TGG - chr3_3:76869618-76869637 Msa0474060:three_prime_UTR 40.0%
!!! TCGTTTTCGTTCTGGTTCAT+CGG - chr3_3:76869766-76869785 Msa0474060:exon 40.0%
! GTTCTTTTTACGTACCCAAC+AGG + chr3_3:76869821-76869840 None:intergenic 40.0%
AAGGCATAAAGTGAAACCGA+AGG + chr3_3:76869886-76869905 None:intergenic 40.0%
AAGCAACCTAGGAGAAAGAA+AGG + chr3_3:76869905-76869924 None:intergenic 40.0%
GAGTTCGAATATGCACCAAT+TGG - chr3_3:76870380-76870399 Msa0474060:CDS 40.0%
! CAAGAAAATATGGCCTTGGT+GGG + chr3_3:76870577-76870596 None:intergenic 40.0%
! TCAAGAAAATATGGCCTTGG+TGG + chr3_3:76870578-76870597 None:intergenic 40.0%
CATCACATTGAAGCCATGTT+AGG + chr3_3:76870619-76870638 None:intergenic 40.0%
GCAGATCATTACTCATCTCT+TGG - chr3_3:76870976-76870995 Msa0474060:CDS 40.0%
GTGCCATACGAACTTTAAGT+TGG + chr3_3:76871047-76871066 None:intergenic 40.0%
CTTAAAGTTCGTATGGCACT+TGG - chr3_3:76871048-76871067 Msa0474060:CDS 40.0%
!! ACCCTTTGCTAGCCTTAAAT+AGG - chr3_3:76871088-76871107 Msa0474060:intron 40.0%
! GCCTATTTAAGGCTAGCAAA+GGG + chr3_3:76871092-76871111 None:intergenic 40.0%
! AGCCTATTTAAGGCTAGCAA+AGG + chr3_3:76871093-76871112 None:intergenic 40.0%
CTAAAGAAGTGAGAGTGGTA+TGG + chr3_3:76871124-76871143 None:intergenic 40.0%
CATACCACTCTCACTTCTTT+AGG - chr3_3:76871122-76871141 Msa0474060:intron 40.0%
AACGCTTATGCTATCCAACT+AGG + chr3_3:76871156-76871175 None:intergenic 40.0%
GTGTCAGAAGTTGTAACAAC+CGG - chr3_3:76871319-76871338 Msa0474060:intron 40.0%
TACTGACATAGGCATTTGTG+AGG + chr3_3:76871504-76871523 None:intergenic 40.0%
! CTGAAACACTTGTTGCAGAA+AGG + chr3_3:76871583-76871602 None:intergenic 40.0%
ATTCAGCTGTGATATCAAGC+TGG + chr3_3:76871784-76871803 None:intergenic 40.0%
AGCTTGATATCACAGCTGAA+TGG - chr3_3:76871783-76871802 Msa0474060:CDS 40.0%
ATATCACAGCTGAATGGTCA+GGG - chr3_3:76871789-76871808 Msa0474060:CDS 40.0%
GGTTTAGTGAGAAATGTCGT+TGG - chr3_3:76871810-76871829 Msa0474060:CDS 40.0%
! ATGATTCTTCTCGATTGGCT+TGG - chr3_3:76871883-76871902 Msa0474060:CDS 40.0%
TACTAATCTCTCGACGACAT+TGG + chr3_3:76871912-76871931 None:intergenic 40.0%
TCAGCAAACATTACTCAGCA+GGG - chr3_3:76872007-76872026 Msa0474060:intron 40.0%
!!! TTCTTGCTGTTTTTGACGCT+GGG - chr3_3:76872076-76872095 Msa0474060:intron 40.0%
!! CGTTGACATAGTCTTGTTTG+TGG + chr3_3:76872218-76872237 None:intergenic 40.0%
TAGTTGACGAAGGAATTAGC+TGG - chr3_3:76872354-76872373 Msa0474060:intron 40.0%
! GTCTTCAGGTGCTTCTTTTA+TGG + chr3_3:76872385-76872404 None:intergenic 40.0%
TTCAGGAGGGATTTCGAATT+GGG + chr3_3:76872520-76872539 None:intergenic 40.0%
TTGTCAGCATGACACATGTA+AGG + chr3_3:76872645-76872664 None:intergenic 40.0%
AGCAAACATTTCCCATGTTC+TGG + chr3_3:76872677-76872696 None:intergenic 40.0%
GAACATGGGAAATGTTTGCT+TGG - chr3_3:76872677-76872696 Msa0474060:intron 40.0%
GAAGATGTAAACCTAATCGG+AGG - chr3_3:76872729-76872748 Msa0474060:intron 40.0%
ATGTAAACCTAATCGGAGGT+AGG - chr3_3:76872733-76872752 Msa0474060:intron 40.0%
CTGATGCTTGTTCCTGTTAA+CGG - chr3_3:76872780-76872799 Msa0474060:intron 40.0%
ATGGATATGTCTGCATACAC+AGG + chr3_3:76872899-76872918 None:intergenic 40.0%
ATCCATGCTAGACAAAGTGA+TGG - chr3_3:76872913-76872932 Msa0474060:intron 40.0%
TACCATCACTTTGTCTAGCA+TGG + chr3_3:76872918-76872937 None:intergenic 40.0%
!! ATGAAAAGCAGTTGATAGGG+TGG - chr3_3:76872945-76872964 Msa0474060:intron 40.0%
! TTAGTTTGATTGCACGGCAT+TGG - chr3_3:76873258-76873277 Msa0474060:five_prime_UTR 40.0%
TAGTTTGATTGCACGGCATT+GGG - chr3_3:76873259-76873278 Msa0474060:five_prime_UTR 40.0%
AGGCATGAAGAAAGCAACCT+AGG + chr3_3:76869916-76869935 None:intergenic 45.0%
ATGGAGGGCCAAATAGGAAA+AGG + chr3_3:76869936-76869955 None:intergenic 45.0%
CAAAACATGGAGGGCCAAAT+AGG + chr3_3:76869942-76869961 None:intergenic 45.0%
CATGGGACTAAGTCATTGCT+AGG + chr3_3:76870871-76870890 None:intergenic 45.0%
GTAGTTATCCGTGTGATGCA+CGG + chr3_3:76870914-76870933 None:intergenic 45.0%
AAGGCCAAGCATTCCATCTA+CGG + chr3_3:76871748-76871767 None:intergenic 45.0%
GATATCACAGCTGAATGGTC+AGG - chr3_3:76871788-76871807 Msa0474060:CDS 45.0%
CTCAGCAAACATTACTCAGC+AGG - chr3_3:76872006-76872025 Msa0474060:intron 45.0%
CAGCAAACATTACTCAGCAG+GGG - chr3_3:76872008-76872027 Msa0474060:intron 45.0%
AGCAAACATTACTCAGCAGG+GGG - chr3_3:76872009-76872028 Msa0474060:intron 45.0%
! GAGCTGAACTTGTTCTTGGA+GGG - chr3_3:76872031-76872050 Msa0474060:intron 45.0%
! AACTTGTTCTTGGAGGGAAG+AGG - chr3_3:76872037-76872056 Msa0474060:intron 45.0%
!!! CTTCTTGCTGTTTTTGACGC+TGG - chr3_3:76872075-76872094 Msa0474060:intron 45.0%
ACCAAACTCTCCCTCTATGT+TGG - chr3_3:76872403-76872422 Msa0474060:intron 45.0%
ACCAACATAGAGGGAGAGTT+TGG + chr3_3:76872407-76872426 None:intergenic 45.0%
ACTCTCCCTCTATGTTGGTA+TGG - chr3_3:76872408-76872427 Msa0474060:intron 45.0%
CTTTCGATCTTCCACTTCCT+GGG + chr3_3:76872497-76872516 None:intergenic 45.0%
CTTCAGGAGGGATTTCGAAT+TGG + chr3_3:76872521-76872540 None:intergenic 45.0%
GTTTGCTTGGGCATTCTAGA+CGG - chr3_3:76872690-76872709 Msa0474060:intron 45.0%
!! ATTCTAGACGGCTCTGAAGT+AGG - chr3_3:76872702-76872721 Msa0474060:intron 45.0%
AACCTAATCGGAGGTAGGAA+TGG - chr3_3:76872738-76872757 Msa0474060:intron 45.0%
AGTTTGATTGCACGGCATTG+GGG - chr3_3:76873260-76873279 Msa0474060:five_prime_UTR 45.0%
TCAACATTGGGTACCCACCA+AGG - chr3_3:76870561-76870580 Msa0474060:intron 50.0%
AGACACCACATCCGCTTTAC+CGG - chr3_3:76870845-76870864 Msa0474060:intron 50.0%
TCATTGCTAGGCCGGTAAAG+CGG + chr3_3:76870859-76870878 None:intergenic 50.0%
GGACTAAGTCATTGCTAGGC+CGG + chr3_3:76870867-76870886 None:intergenic 50.0%
GCAATGACTTAGTCCCATGC+AGG - chr3_3:76870872-76870891 Msa0474060:intron 50.0%
AGGCCAAGCATTCCATCTAC+GGG + chr3_3:76871747-76871766 None:intergenic 50.0%
GTAGATGGAATGCTTGGCCT+TGG - chr3_3:76871747-76871766 Msa0474060:CDS 50.0%
GGACACTGTTTGAGTGCACA+AGG - chr3_3:76871831-76871850 Msa0474060:CDS 50.0%
CACTGTTTGAGTGCACAAGG+CGG - chr3_3:76871834-76871853 Msa0474060:CDS 50.0%
GGCGGAGGATACATCTTCTT+TGG - chr3_3:76871852-76871871 Msa0474060:CDS 50.0%
! GGAGCTGAACTTGTTCTTGG+AGG - chr3_3:76872030-76872049 Msa0474060:intron 50.0%
TTCTTGGAGGGAAGAGGACT+GGG - chr3_3:76872043-76872062 Msa0474060:intron 50.0%
! AGAGGGAGAGTTTGGTCTTC+AGG + chr3_3:76872399-76872418 None:intergenic 50.0%
CCTGGGAAGCTAAGTGCAAT+AGG + chr3_3:76872480-76872499 None:intergenic 50.0%
CCTATTGCACTTAGCTTCCC+AGG - chr3_3:76872477-76872496 Msa0474060:intron 50.0%
GCTTTCGATCTTCCACTTCC+TGG + chr3_3:76872498-76872517 None:intergenic 50.0%
TGTCTGCATACACAGGACGA+GGG + chr3_3:76872892-76872911 None:intergenic 50.0%
ATGTCTGCATACACAGGACG+AGG + chr3_3:76872893-76872912 None:intergenic 50.0%
GATGACGACGACGACGATGA+AGG + chr3_3:76869728-76869747 None:intergenic 55.0%
TGGTTCATCGGTCGTGTTCC+CGG - chr3_3:76869778-76869797 Msa0474060:exon 55.0%
ACACGGGTAGCGACCTAACA+TGG - chr3_3:76870603-76870622 Msa0474060:intron 55.0%
ACCTGAGAGCAACGCGAACA+AGG + chr3_3:76870644-76870663 None:intergenic 55.0%
TGATGCACGGATGCACAGAG+GGG + chr3_3:76870901-76870920 None:intergenic 55.0%
GTGATGCACGGATGCACAGA+GGG + chr3_3:76870902-76870921 None:intergenic 55.0%
TGTGATGCACGGATGCACAG+AGG + chr3_3:76870903-76870922 None:intergenic 55.0%
CTGTGCATCCGTGCATCACA+CGG - chr3_3:76870903-76870922 Msa0474060:CDS 55.0%
ACGGGGTGGTAGGAAGAATC+TGG + chr3_3:76871729-76871748 None:intergenic 55.0%
TCTTCCTACCACCCCGTAGA+TGG - chr3_3:76871732-76871751 Msa0474060:intron 55.0%
CATTCCATCTACGGGGTGGT+AGG + chr3_3:76871739-76871758 None:intergenic 55.0%
CAAGCATTCCATCTACGGGG+TGG + chr3_3:76871743-76871762 None:intergenic 55.0%
CACCCCGTAGATGGAATGCT+TGG - chr3_3:76871741-76871760 Msa0474060:CDS 55.0%
GGCCAAGCATTCCATCTACG+GGG + chr3_3:76871746-76871765 None:intergenic 55.0%
!! ATGGAATGCTTGGCCTTGGC+AGG - chr3_3:76871751-76871770 Msa0474060:CDS 55.0%
!! TGGAATGCTTGGCCTTGGCA+GGG - chr3_3:76871752-76871771 Msa0474060:CDS 55.0%
! AGCTGGATTTTCCCCTGCCA+AGG + chr3_3:76871767-76871786 None:intergenic 55.0%
TGTTTGAGTGCACAAGGCGG+AGG - chr3_3:76871837-76871856 Msa0474060:CDS 55.0%
! GGGGGAGCTGAACTTGTTCT+TGG - chr3_3:76872027-76872046 Msa0474060:intron 55.0%
GTTCTTGGAGGGAAGAGGAC+TGG - chr3_3:76872042-76872061 Msa0474060:intron 55.0%
GCACTTAGCTTCCCAGGAAG+TGG - chr3_3:76872483-76872502 Msa0474060:intron 55.0%
!! AGACGGCTCTGAAGTAGGAG+TGG - chr3_3:76872707-76872726 Msa0474060:intron 55.0%
CGCCATTCCTACCTCCGATT+AGG + chr3_3:76872743-76872762 None:intergenic 55.0%
TCGGTCGTGTTCCCGGTTCA+TGG - chr3_3:76869785-76869804 Msa0474060:CDS 60.0%
! GCCTTGTTCGCGTTGCTCTC+AGG - chr3_3:76870640-76870659 Msa0474060:intron 60.0%
CTAGGCCGGTAAAGCGGATG+TGG + chr3_3:76870853-76870872 None:intergenic 60.0%
CACAGAGGGGATGCCTGCAT+GGG + chr3_3:76870888-76870907 None:intergenic 60.0%
!! GGAATGCTTGGCCTTGGCAG+GGG - chr3_3:76871753-76871772 Msa0474060:CDS 60.0%
GGAGGGAAGAGGACTGGGTT+TGG - chr3_3:76872048-76872067 Msa0474060:intron 60.0%
GCACAGAGGGGATGCCTGCA+TGG + chr3_3:76870889-76870908 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76869474 76873329 76869474 ID=Msa0474060;Name=Msa0474060
chr3_3 mRNA 76869474 76873329 76869474 ID=Msa0474060-mRNA-1;Parent=Msa0474060;Name=Msa0474060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=98|0.85|0.87|1|1|1|8|311|442
chr3_3 exon 76869474 76869894 76869474 ID=Msa0474060-mRNA-1:exon:20300;Parent=Msa0474060-mRNA-1
chr3_3 exon 76870053 76870125 76870053 ID=Msa0474060-mRNA-1:exon:20299;Parent=Msa0474060-mRNA-1
chr3_3 exon 76870246 76870446 76870246 ID=Msa0474060-mRNA-1:exon:20298;Parent=Msa0474060-mRNA-1
chr3_3 exon 76870654 76870792 76870654 ID=Msa0474060-mRNA-1:exon:20297;Parent=Msa0474060-mRNA-1
chr3_3 exon 76870890 76871099 76870890 ID=Msa0474060-mRNA-1:exon:20296;Parent=Msa0474060-mRNA-1
chr3_3 exon 76871733 76871956 76871733 ID=Msa0474060-mRNA-1:exon:20295;Parent=Msa0474060-mRNA-1
chr3_3 exon 76872142 76872259 76872142 ID=Msa0474060-mRNA-1:exon:20294;Parent=Msa0474060-mRNA-1
chr3_3 exon 76872978 76873329 76872978 ID=Msa0474060-mRNA-1:exon:20293;Parent=Msa0474060-mRNA-1
chr3_3 five_prime_UTR 76873232 76873329 76873232 ID=Msa0474060-mRNA-1:five_prime_utr;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76872978 76873231 76872978 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76872142 76872259 76872142 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76871733 76871956 76871733 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76870890 76871099 76870890 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76870654 76870792 76870654 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76870246 76870446 76870246 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76870053 76870125 76870053 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 CDS 76869785 76869894 76869785 ID=Msa0474060-mRNA-1:cds;Parent=Msa0474060-mRNA-1
chr3_3 three_prime_UTR 76869474 76869784 76869474 ID=Msa0474060-mRNA-1:three_prime_utr;Parent=Msa0474060-mRNA-1
Gene Sequence

>Msa0474060

ATGAAGTCAGGGAAATTGGTATTCTTTGTTGTTCTACTCTTGTTGAGTTCCTCTACTTGTTTAGCTTGGTTTGGTAGTAGTAGTAGTAGTAGCAAACACAAAATTTCAAGTTCAAGTGCAAATGGAAGAAACTCCATTCTTTCATATGAACAACCTTCATCGTCGTCGTCGTCATCATCGCCTTCATTCTTGAATCGTTTTCGTTCTGGTTCATCGGTCGTGTTCCCGGTTCATGGAAATGTTTATCCTGTTGGGTTTTATAATGTGACTATCAACATTGGGTACCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTAACATGGCTTCAATGTGATGCGCCTTGTTCGCGTTGCTCTCAGACACCACATCCGCTTTACCGGCCTAGCAATGACTTAGTCCCATGCAGGCATCCCCTCTGTGCATCCGTGCATCACACGGATAACTACGACTGTGAAGTCGAGCATCAGTGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCTCTTGGTGTACTTGTCAATGATGTTTATGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGATGCGGCTATGATCAGATTTTTCCAGATTCTTCCTACCACCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGAAAATCCAGCTTGATATCACAGCTGAATGGTCAGGGTTTAGTGAGAAATGTCGTTGGACACTGTTTGAGTGCACAAGGCGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGGCTTGGACTCCAATCAAACATTACTCAGCAGGGGGAGCTGAACTTGTTCTTGGAGGGAAGAGGACTGGGTTTGGAAATCTTCTTGCTGTTTTTGACGCTGGGAGTTCTTATACTTACTTCAACTCTAATGCTTATCAAGCACTAATTTCTTGGTTGACGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGACCAAACTCTCCCTCTATGTTGGTATGGAAAAAGACCTTTTAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCTATTGCACTTAGCTTCCCAGGAAGTGGAAGATCGAAAGCCCAATTCGAAATCCCTCCTGAAGCATATCTGATTATATCAAACATGGGAAATGTTTGCTTGGGCATTCTAGACGGCTCTGAAGTAGGAGTGGAAGATGTAAACCTAATCGGAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAAAAGCAGTTGATAGGGTGGACAGCAGCAGATTGTAACCGAGTTCCAAAATCCAAAGATGTCAGCATTTGA
Protein sequence

>Msa0474060

MKSGKLVFFVVLLLLSSSTCLAWFGSSSSSSKHKISSSSANGRNSILSYEQPSSSSSSSSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTINIGYPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASVHHTDNYDCEVEHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNGQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPIKHYSAGGAELVLGGKRTGFGNLLAVFDAGSSYTYFNSNAYQALISWLTKELAGKPIKEAPEDQTLPLCWYGKRPFRSVYEVRKYFKPIALSFPGSGRSKAQFEIPPEAYLIISNMGNVCLGILDGSEVGVEDVNLIGDISMLDKVMVFDNEKQLIGWTAADCNRVPKSKDVSI*