AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518680 MtrunA17_Chr3g0130741 97.758 446 9 1 1 446 1 445 0.0 892
Msa0518680 MtrunA17_Chr8g0384731 72.558 430 101 4 18 446 22 435 0.0 650
Msa0518680 MtrunA17_Chr1g0159791 55.556 378 162 5 67 440 39 414 4.39e-143 415
Msa0518680 MtrunA17_Chr4g0010951 45.232 409 184 9 70 441 46 451 1.98e-114 343
Msa0518680 MtrunA17_Chr6g0484731 44.855 379 192 11 70 435 176 550 1.14e-95 298
Msa0518680 MtrunA17_Chr3g0078321 37.250 400 222 15 54 439 32 416 9.76e-75 240
Msa0518680 MtrunA17_Chr4g0010941 44.492 236 99 4 234 439 2 235 1.14e-63 205
Msa0518680 MtrunA17_Chr1g0179751 25.783 415 256 13 65 443 84 482 1.85e-34 134
Msa0518680 MtrunA17_Chr1g0189381 26.984 441 267 17 39 445 20 439 1.20e-33 132
Msa0518680 MtrunA17_Chr7g0249451 26.585 410 250 17 65 443 49 438 5.05e-32 127
Msa0518680 MtrunA17_Chr7g0265331 26.214 412 238 17 74 443 68 455 4.07e-31 125
Msa0518680 MtrunA17_Chr2g0320621 26.866 402 248 16 65 436 53 438 1.44e-29 120
Msa0518680 MtrunA17_Chr7g0221681 27.419 434 256 19 46 443 31 441 5.51e-29 118
Msa0518680 MtrunA17_Chr4g0027681 25.063 395 247 15 72 436 62 437 8.94e-29 118
Msa0518680 MtrunA17_Chr4g0053721 26.603 421 260 17 51 445 43 440 2.58e-28 117
Msa0518680 MtrunA17_Chr5g0425141 27.568 370 218 15 90 435 106 449 4.28e-26 110
Msa0518680 MtrunA17_Chr8g0352671 25.000 400 247 14 64 438 68 439 6.12e-26 109
Msa0518680 MtrunA17_Chr5g0435871 25.500 400 243 16 64 438 68 437 1.20e-25 108
Msa0518680 MtrunA17_Chr5g0401601 26.400 375 236 15 84 438 87 441 1.80e-25 109
Msa0518680 MtrunA17_Chr5g0406001 27.174 368 223 12 90 435 117 461 3.10e-25 108
Msa0518680 MtrunA17_Chr8g0386441 24.873 394 251 13 64 438 65 432 3.54e-25 107
Msa0518680 MtrunA17_Chr5g0435971 25.500 400 243 16 64 438 65 434 5.24e-25 106
Msa0518680 MtrunA17_Chr8g0371371 29.288 379 217 19 90 442 117 470 7.54e-25 107
Msa0518680 MtrunA17_Chr5g0419291 25.661 378 227 17 84 438 85 431 6.68e-24 103
Msa0518680 MtrunA17_Chr2g0310831 25.445 393 243 16 65 437 80 442 7.71e-24 103
Msa0518680 MtrunA17_Chr8g0352661 25.320 391 240 15 71 438 78 439 1.81e-23 102
Msa0518680 MtrunA17_Chr3g0130931 25.564 399 228 22 70 438 92 451 3.88e-23 101
Msa0518680 MtrunA17_Chr2g0333991 25.984 381 237 15 75 434 78 434 3.62e-22 98.2
Msa0518680 MtrunA17_Chr3g0124421 25.831 391 223 15 90 446 104 461 4.65e-22 98.6
Msa0518680 MtrunA17_Chr5g0395911 26.735 389 220 17 79 437 62 415 5.68e-22 97.4
Msa0518680 MtrunA17_Chr2g0311451 25.260 384 242 15 75 437 78 437 1.41e-21 96.7
Msa0518680 MtrunA17_Chr2g0310801 24.485 388 246 15 67 437 78 435 8.27e-21 94.4
Msa0518680 MtrunA17_Chr2g0312941 27.363 402 210 22 86 437 88 457 1.82e-19 90.5
Msa0518680 MtrunA17_Chr8g0371351 26.455 378 228 16 83 435 97 449 2.30e-19 90.5
Msa0518680 MtrunA17_Chr7g0275731 28.117 377 216 19 84 436 140 485 1.34e-18 88.2
Msa0518680 MtrunA17_Chr2g0310821 23.117 385 248 15 67 438 96 445 1.89e-17 84.3
Msa0518680 MtrunA17_Chr4g0023351 31.633 196 110 10 57 244 37 216 2.87e-17 82.0
Msa0518680 MtrunA17_Chr4g0001991 26.005 373 231 19 87 438 172 520 6.82e-17 82.8
Msa0518680 MtrunA17_Chr2g0308001 24.096 415 247 17 67 445 36 418 1.84e-16 81.3
Msa0518680 MtrunA17_Chr5g0442921 26.018 442 262 16 33 438 144 556 2.71e-16 81.3
Msa0518680 MtrunA17_Chr5g0434411 23.136 389 233 12 88 440 84 442 1.55e-15 78.6
Msa0518680 MtrunA17_Chr8g0390761 30.357 168 98 6 88 251 119 271 3.41e-15 77.4
Msa0518680 MtrunA17_Chr5g0395871 25.000 376 227 18 84 435 80 424 3.81e-15 77.0
Msa0518680 MtrunA17_Chr1g0212321 31.757 148 85 6 84 227 145 280 1.29e-14 75.9
Msa0518680 MtrunA17_Chr1g0179091 23.058 399 227 17 63 437 26 368 2.98e-14 73.9
Msa0518680 MtrunA17_Chr2g0291201 23.936 376 239 15 84 436 101 452 3.69e-14 74.3
Msa0518680 MtrunA17_Chr6g0484901 24.242 363 226 16 90 435 161 491 4.20e-14 74.3
Msa0518680 MtrunA17_Chr6g0457401 25.581 301 183 14 85 359 91 376 9.90e-14 72.8
Msa0518680 MtrunA17_Chr3g0099901 24.267 375 245 14 78 436 135 486 1.11e-13 72.8
Msa0518680 MtrunA17_Chr3g0095891 23.620 453 266 20 30 438 45 461 2.74e-13 71.6
Msa0518680 MtrunA17_Chr2g0307461 23.544 395 237 16 79 435 63 430 1.97e-12 68.9
Msa0518680 MtrunA17_Chr1g0210201 25.000 372 225 19 84 435 130 467 2.19e-12 68.9
Msa0518680 MtrunA17_Chr3g0099891 25.397 378 233 18 76 435 108 454 3.35e-12 68.2
Msa0518680 MtrunA17_Chr5g0434441 23.316 386 238 12 88 440 71 431 1.79e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518680 AT4G33490.2 65.464 388 131 3 62 446 35 422 0.0 540
Msa0518680 AT4G33490.1 67.614 352 111 3 62 410 32 383 7.07e-177 501
Msa0518680 AT1G44130.1 51.989 377 176 5 68 441 31 405 1.17e-143 416
Msa0518680 AT1G77480.2 47.118 399 206 5 48 442 29 426 2.16e-131 386
Msa0518680 AT1G77480.1 46.970 396 205 5 48 439 29 423 1.28e-129 383
Msa0518680 AT1G49050.1 44.836 397 194 14 70 446 187 578 3.59e-94 295
Msa0518680 AT1G49050.2 43.570 381 192 13 85 446 29 405 6.29e-88 274
Msa0518680 AT1G49050.3 43.911 271 134 9 70 324 187 455 8.58e-59 200
Msa0518680 AT1G65240.1 28.960 404 238 14 67 443 53 434 3.52e-38 144
Msa0518680 AT2G36670.2 26.521 411 243 15 69 446 81 465 6.07e-34 133
Msa0518680 AT5G22850.1 26.316 399 244 15 69 436 62 441 1.01e-33 132
Msa0518680 AT3G02740.1 29.250 400 238 16 70 443 67 447 1.06e-32 129
Msa0518680 AT5G43100.2 28.841 371 224 15 84 438 74 420 1.71e-32 129
Msa0518680 AT5G36260.1 27.273 385 238 12 83 443 75 441 2.49e-32 128
Msa0518680 AT2G36670.1 26.202 416 243 16 69 446 81 470 9.72e-32 127
Msa0518680 AT5G43100.1 28.841 371 224 15 84 438 74 420 1.05e-31 128
Msa0518680 AT3G02740.2 29.124 388 232 15 80 443 4 372 1.78e-31 125
Msa0518680 AT2G36670.4 25.700 393 235 14 85 446 33 399 2.10e-30 122
Msa0518680 AT2G36670.3 25.700 393 235 14 85 446 33 399 2.10e-30 122
Msa0518680 AT1G05840.1 26.904 394 229 13 84 443 78 446 2.42e-30 123
Msa0518680 AT1G08210.4 28.606 416 234 17 69 444 99 491 2.33e-28 117
Msa0518680 AT1G08210.1 28.606 416 234 17 69 444 65 457 2.49e-28 117
Msa0518680 AT3G50050.1 26.781 407 260 14 50 438 53 439 4.29e-28 117
Msa0518680 AT1G08210.3 28.606 416 234 17 69 444 113 505 4.31e-28 117
Msa0518680 AT2G17760.1 29.973 377 219 19 80 435 97 449 2.00e-27 115
Msa0518680 AT1G08210.2 27.273 440 236 18 69 444 65 484 4.99e-24 105
Msa0518680 AT5G10080.1 26.708 483 269 21 6 437 7 455 6.83e-23 101
Msa0518680 AT3G25700.1 26.667 390 242 17 76 435 74 449 3.26e-22 99.0
Msa0518680 AT4G35880.1 26.702 382 230 15 83 441 103 457 1.21e-21 97.8
Msa0518680 AT5G10770.1 26.203 374 238 15 78 436 124 474 8.90e-21 95.1
Msa0518680 AT3G51330.3 26.415 371 242 15 83 436 98 454 1.16e-20 94.4
Msa0518680 AT3G51330.1 26.486 370 241 15 83 435 98 453 1.49e-20 94.7
Msa0518680 AT3G51350.1 27.224 371 231 15 85 435 101 452 8.70e-20 92.4
Msa0518680 AT2G28010.1 29.150 247 137 9 10 255 7 216 2.78e-19 89.7
Msa0518680 AT3G51360.7 24.462 372 242 12 83 436 2 352 6.39e-19 89.0
Msa0518680 AT3G51360.9 24.932 365 235 12 90 436 103 446 1.09e-18 89.0
Msa0518680 AT3G51360.1 24.932 365 235 12 90 436 93 436 1.15e-18 88.6
Msa0518680 AT1G64830.1 28.333 300 177 16 84 359 84 369 3.61e-16 80.9
Msa0518680 AT4G35880.2 26.163 344 209 14 83 403 103 424 4.77e-16 80.5
Msa0518680 AT3G51340.2 26.216 370 235 14 83 435 99 447 6.32e-16 80.5
Msa0518680 AT1G01300.1 26.260 377 221 18 84 435 140 484 1.51e-15 79.0
Msa0518680 AT4G12920.1 25.490 255 172 10 86 333 58 301 1.62e-15 78.6
Msa0518680 AT3G18490.1 24.675 385 229 21 76 435 152 500 8.03e-15 77.0
Msa0518680 AT3G51360.2 28.689 244 151 8 90 318 103 338 8.90e-15 75.9
Msa0518680 AT3G51360.5 28.279 244 152 7 90 318 103 338 1.27e-14 75.9
Msa0518680 AT3G51360.6 28.689 244 151 8 90 318 103 338 1.45e-14 75.9
Msa0518680 AT3G51360.4 28.689 244 151 8 90 318 93 328 2.00e-14 75.1
Msa0518680 AT3G51340.1 25.526 380 237 15 83 435 99 459 2.42e-14 75.5
Msa0518680 AT3G51360.10 28.689 244 151 8 90 318 93 328 2.46e-14 75.1
Msa0518680 AT2G28040.2 24.645 422 249 20 33 436 12 382 2.59e-14 74.7
Msa0518680 AT5G37540.1 23.404 423 266 15 51 439 44 442 6.27e-14 73.9
Msa0518680 AT2G28040.1 24.495 396 237 20 65 438 38 393 9.75e-14 73.2
Msa0518680 AT4G30030.1 24.668 377 235 18 82 438 75 422 2.24e-13 72.0
Msa0518680 AT2G23945.1 27.046 281 171 11 85 345 95 361 7.64e-13 70.5
Msa0518680 AT5G10760.1 27.132 258 155 10 84 325 130 370 2.12e-12 69.3
Msa0518680 AT1G25510.1 23.360 381 236 16 76 435 138 483 4.03e-12 68.6
Msa0518680 AT3G20015.1 29.924 264 152 11 84 328 129 378 5.53e-12 67.8
Msa0518680 AT5G02190.1 23.980 392 218 23 95 436 82 443 1.32e-11 66.6
Msa0518680 AT2G35615.1 22.622 389 238 14 84 436 83 444 2.85e-11 65.9
Msa0518680 AT1G31450.1 24.548 387 231 16 84 436 83 442 6.77e-11 64.3
Msa0518680 AT3G25700.2 32.812 128 75 6 84 201 82 208 7.42e-11 63.9

Find 132 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGACATCTTTGGATTT+TGG 0.149011 3_4:-70520357 None:intergenic
TAATCAAATGCTGACATCTT+TGG 0.242452 3_4:-70520364 None:intergenic
CTTATCAAGCACTAATTTCT+TGG 0.254030 3_4:+70519490 Msa0518680:CDS
TGGTTCATCGGTTGTGTTCC+CGG 0.283511 3_4:+70517144 Msa0518680:CDS
ACTTTATAGAACACGATATA+TGG 0.292279 3_4:+70520455 Msa0518680:three_prime_UTR
AATCATGAAGTCAGGGAAAT+TGG 0.293581 3_4:+70516937 Msa0518680:exon
GCTTTCGATCTTCCACTTCC+TGG 0.304667 3_4:-70519858 None:intergenic
GGCGGAGGATACATCTTCTT+TGG 0.305148 3_4:+70519215 Msa0518680:CDS
AGAGGAAGAGTTTGGTCTTC+AGG 0.323198 3_4:-70519759 None:intergenic
AGACACCACATCCGCTTTAC+CGG 0.336790 3_4:+70518211 Msa0518680:intron
GTGTCAATATCAAGAAAATA+TGG 0.341260 3_4:-70517950 None:intergenic
GACAATGAAAAGCAGTTGAT+AGG 0.341276 3_4:+70520306 Msa0518680:CDS
CTTCAGGAGGGATTTCGAAT+TGG 0.346518 3_4:-70519881 None:intergenic
TCGGTTGTGTTCCCGGTTCA+TGG 0.346643 3_4:+70517151 Msa0518680:CDS
TTCTTGGAGGGAAGAGGACT+GGG 0.346941 3_4:+70519406 Msa0518680:CDS
CGCCATTCCTACCTCCGATT+AGG 0.353194 3_4:-70520104 None:intergenic
TAGTTTGATTGCACGGCATT+GGG 0.360844 3_4:+70520626 Msa0518680:three_prime_UTR
TTGGGGATTTCATTTAGAAT+TGG 0.362523 3_4:+70520644 Msa0518680:three_prime_UTR
GGAGGGAAGAGGACTGGGTT+TGG 0.363106 3_4:+70519411 Msa0518680:CDS
TCTACTTGTTTAGCTTGGTT+TGG 0.365632 3_4:+70516992 Msa0518680:CDS
TCTTCCTACCACCCCGTAGA+TGG 0.373727 3_4:+70519095 Msa0518680:CDS
ACTTCATATACACTTCTAAA+AGG 0.375337 3_4:-70519801 None:intergenic
TTCAGGAGGGATTTCGAATT+GGG 0.375689 3_4:-70519880 None:intergenic
GGATAAACATTTCCATGAAC+CGG 0.391556 3_4:-70517163 None:intergenic
TAACATGATATGTTGTTATA+TGG 0.393852 3_4:-70520605 None:intergenic
CCTGGGAAGCTAAGTGCAAT+AGG 0.403734 3_4:-70519840 None:intergenic
GCCTTGTTCGCGTTGCTCTC+AGG 0.405030 3_4:+70518006 Msa0518680:CDS
TTATCAAGCACTAATTTCTT+GGG 0.408330 3_4:+70519491 Msa0518680:CDS
GATATAATCAGATATGCTTC+AGG 0.410114 3_4:-70519897 None:intergenic
ATGGAATGCTTGGCCTTGGC+AGG 0.412501 3_4:+70519114 Msa0518680:CDS
CTCAGCAAACATTACTCAGC+AGG 0.412530 3_4:+70519369 Msa0518680:intron
CATGGAAATGTTTATCCTGT+TGG 0.413700 3_4:+70517169 Msa0518680:CDS
ATGGAAATGTTTATCCTGTT+GGG 0.418408 3_4:+70517170 Msa0518680:CDS
GTTCCTCTACTTGTTTAGCT+TGG 0.418515 3_4:+70516987 Msa0518680:CDS
CATCACATTGAAGCCATGTT+AGG 0.420882 3_4:-70517982 None:intergenic
CTTAAAGTTCGTATGGCACT+TGG 0.422527 3_4:+70518414 Msa0518680:CDS
AATAGAGAAATCATGAAGTC+AGG 0.426807 3_4:+70516929 Msa0518680:exon
ATTTCAAGTTCAAGTGCAAA+TGG 0.428003 3_4:+70517040 Msa0518680:CDS
CTTTCGATCTTCCACTTCCT+GGG 0.434979 3_4:-70519857 None:intergenic
TATGTTCTCAACTTTACAAA+TGG 0.435278 3_4:+70518384 Msa0518680:CDS
ACGGGGTGGTAGGAAGAATC+TGG 0.438753 3_4:-70519089 None:intergenic
TGTTTATGATTCTTCTCGAT+TGG 0.447111 3_4:+70519241 Msa0518680:CDS
GTTCTTGGAGGGAAGAGGAC+TGG 0.447212 3_4:+70519405 Msa0518680:CDS
ACCAACATAGAGGAAGAGTT+TGG 0.449229 3_4:-70519767 None:intergenic
TTAGTTTGATTGCACGGCAT+TGG 0.449305 3_4:+70520625 Msa0518680:three_prime_UTR
GATATCACAGCTGAATGGTC+AGG 0.452709 3_4:+70519151 Msa0518680:CDS
ATGATTCTTCTCGATTGGCT+TGG 0.455289 3_4:+70519246 Msa0518680:CDS
CCTATTGCACTTAGCTTCCC+AGG 0.459180 3_4:+70519840 Msa0518680:CDS
ATAATGTGACTATCAACATT+GGG 0.460427 3_4:+70517915 Msa0518680:CDS
AACATGGGAAATGTTTGCTT+GGG 0.462552 3_4:+70520042 Msa0518680:CDS
GTGCATAGTATATTGTTAAG+TGG 0.465634 3_4:+70520519 Msa0518680:three_prime_UTR
ATATCAAGAAAATATGGCCT+TGG 0.468926 3_4:-70517944 None:intergenic
GCACTTAGCTTCCCAGGAAG+TGG 0.475231 3_4:+70519846 Msa0518680:CDS
GCACAGAGGGGATGCCTGCA+TGG 0.478162 3_4:-70518252 None:intergenic
GTAGATGGAATGCTTGGCCT+TGG 0.479671 3_4:+70519110 Msa0518680:CDS
GAACATGGGAAATGTTTGCT+TGG 0.481022 3_4:+70520041 Msa0518680:intron
GTGGAAGATGTAAACCTAAT+CGG 0.481109 3_4:+70520090 Msa0518680:CDS
ACTCTTCCTCTATGTTGGTA+TGG 0.484010 3_4:+70519771 Msa0518680:CDS
ATATATCGTGTTCTATAAAG+TGG 0.488423 3_4:-70520453 None:intergenic
ATTCTAGACGGCTCTGAAGT+AGG 0.488461 3_4:+70520066 Msa0518680:CDS
AAGGCCAAGCATTCCATCTA+CGG 0.491428 3_4:-70519108 None:intergenic
TGGCTGATCACTTTGTCAGT+TGG 0.491728 3_4:-70520585 None:intergenic
TCAAGAAAATATGGCCTTGG+TGG 0.495645 3_4:-70517941 None:intergenic
CACCCCGTAGATGGAATGCT+TGG 0.499828 3_4:+70519104 Msa0518680:CDS
ACGATATATGGTTGTATGAA+AGG 0.500199 3_4:+70520467 Msa0518680:three_prime_UTR
ATCATGTTAGTTTGATTGCA+CGG 0.504799 3_4:+70520619 Msa0518680:three_prime_UTR
TACCATCACTTTGTCTAGCA+TGG 0.505530 3_4:-70520280 None:intergenic
CGAAAACGATTCAAGAATGA+AGG 0.508091 3_4:-70517118 None:intergenic
AGGCCAAGCATTCCATCTAC+GGG 0.508129 3_4:-70519107 None:intergenic
GTGCCATACGAACTTTAAGT+TGG 0.511112 3_4:-70518410 None:intergenic
GCAGATCATTACTCATCTCT+TGG 0.518717 3_4:+70518342 Msa0518680:CDS
TATAATGTGACTATCAACAT+TGG 0.520628 3_4:+70517914 Msa0518680:CDS
CTAGGCCGGTAAAGCGGATG+TGG 0.520658 3_4:-70518216 None:intergenic
AGATAATCTAAGAGTAATGC+AGG 0.524455 3_4:+70520677 Msa0518680:three_prime_UTR
TATTGTTAAGTGGCATATAG+AGG 0.527766 3_4:+70520529 Msa0518680:three_prime_UTR
ACAATGAAAAGCAGTTGATA+GGG 0.527865 3_4:+70520307 Msa0518680:CDS
GTGATGCACGGATGCACAGA+GGG 0.529685 3_4:-70518265 None:intergenic
GGAGCTGAACTTGTTCTTGG+AGG 0.531520 3_4:+70519393 Msa0518680:CDS
GATGACGACGACGACGATGA+AGG 0.535925 3_4:-70517091 None:intergenic
CATGGGACTAAGTCATTGCT+AGG 0.535975 3_4:-70518234 None:intergenic
ACCAAACTCTTCCTCTATGT+TGG 0.539118 3_4:+70519766 Msa0518680:CDS
AACTTGTTCTTGGAGGGAAG+AGG 0.539126 3_4:+70519400 Msa0518680:CDS
TGGAATGCTTGGCCTTGGCA+GGG 0.541186 3_4:+70519115 Msa0518680:CDS
GGAATGCTTGGCCTTGGCAG+GGG 0.545359 3_4:+70519116 Msa0518680:CDS
GAGCTGAACTTGTTCTTGGA+GGG 0.545394 3_4:+70519394 Msa0518680:CDS
TACTAATCTCTCGACGACAT+TGG 0.546672 3_4:-70519272 None:intergenic
CATTCCATCTACGGGGTGGT+AGG 0.549212 3_4:-70519099 None:intergenic
AGTTTGATTGCACGGCATTG+GGG 0.551103 3_4:+70520627 Msa0518680:three_prime_UTR
ATATCACAGCTGAATGGTCA+GGG 0.557396 3_4:+70519152 Msa0518680:CDS
CTGTGCATCCGTGCATCACA+CGG 0.557548 3_4:+70518269 Msa0518680:CDS
TCAGCAAACATTACTCAGCA+GGG 0.557841 3_4:+70519370 Msa0518680:intron
ATAGAGAAATCATGAAGTCA+GGG 0.558907 3_4:+70516930 Msa0518680:exon
AGGTTGTTCATATGAAAGAA+TGG 0.559496 3_4:-70517071 None:intergenic
CACAGAGGGGATGCCTGCAT+GGG 0.564456 3_4:-70518251 None:intergenic
GGACTAAGTCATTGCTAGGC+CGG 0.569566 3_4:-70518230 None:intergenic
GTTTGCTTGGGCATTCTAGA+CGG 0.569919 3_4:+70520054 Msa0518680:CDS
GTAGTTATCCGTGTGATGCA+CGG 0.570573 3_4:-70518277 None:intergenic
TTAAAGTTCGTATGGCACTT+GGG 0.575859 3_4:+70518415 Msa0518680:CDS
ACACGGGTAGCGACCTAACA+TGG 0.578697 3_4:+70517969 Msa0518680:CDS
ACCTGAGAGCAACGCGAACA+AGG 0.580548 3_4:-70518007 None:intergenic
GGTTTAGTGAGAAATGTCGT+TGG 0.585900 3_4:+70519173 Msa0518680:CDS
GCAATGACTTAGTCCCATGC+AGG 0.592637 3_4:+70518238 Msa0518680:CDS
CAAGAAAATATGGCCTTGGT+GGG 0.593840 3_4:-70517940 None:intergenic
TTTCCATATGTAGTTGACGA+AGG 0.600659 3_4:+70519707 Msa0518680:intron
AGCTTGATATCACAGCTGAA+TGG 0.601370 3_4:+70519146 Msa0518680:CDS
TGTTTGAGTGCACAAGGCGG+AGG 0.601478 3_4:+70519200 Msa0518680:CDS
AGTCCAACTTAAAGTTCGTA+TGG 0.601835 3_4:+70518407 Msa0518680:CDS
ATTCAGCTGTGATATCAAGC+TGG 0.604358 3_4:-70519144 None:intergenic
AGACGGCTCTGAAGTAGGAG+TGG 0.605898 3_4:+70520071 Msa0518680:CDS
AAACCAAGCTAAACAAGTAG+AGG 0.606468 3_4:-70516990 None:intergenic
TAGTTGACGAAGGAATTAGC+TGG 0.606843 3_4:+70519717 Msa0518680:intron
AAATTGTTCTTCCAGAACAT+GGG 0.610504 3_4:+70520027 Msa0518680:intron
TATATCGTGTTCTATAAAGT+GGG 0.612282 3_4:-70520452 None:intergenic
ATAATCAGATATGCTTCAGG+AGG 0.624631 3_4:-70519894 None:intergenic
GGACACTGTTTGAGTGCACA+AGG 0.625207 3_4:+70519194 Msa0518680:CDS
TTTGATTACGAAAGATACAT+CGG 0.632392 3_4:+70520379 Msa0518680:exon
ATGAAAAGCAGTTGATAGGG+TGG 0.632654 3_4:+70520310 Msa0518680:CDS
ATCCATGCTAGACAAAGTGA+TGG 0.638414 3_4:+70520278 Msa0518680:CDS
TCAACATTGGGTACCCACCA+AGG 0.642379 3_4:+70517927 Msa0518680:CDS
GATAAACATTTCCATGAACC+GGG 0.645327 3_4:-70517162 None:intergenic
AGAAAACTGAGACTATGTTG+TGG 0.653321 3_4:-70516869 None:intergenic
AGCAAACATTACTCAGCAGG+GGG 0.654958 3_4:+70519372 Msa0518680:intron
CAGCAAACATTACTCAGCAG+GGG 0.656453 3_4:+70519371 Msa0518680:intron
TCATTGCTAGGCCGGTAAAG+CGG 0.656612 3_4:-70518222 None:intergenic
TAATCAGATATGCTTCAGGA+GGG 0.677945 3_4:-70519893 None:intergenic
ATGTAAACTGATTAACTGAG+TGG 0.681726 3_4:-70520402 None:intergenic
GAAGATGTAAACCTAATCGG+AGG 0.690670 3_4:+70520093 Msa0518680:CDS
CAAGCATTCCATCTACGGGG+TGG 0.700753 3_4:-70519103 None:intergenic
TGTGATGCACGGATGCACAG+AGG 0.715403 3_4:-70518266 None:intergenic
CACTGTTTGAGTGCACAAGG+CGG 0.732542 3_4:+70519197 Msa0518680:CDS
GGCCAAGCATTCCATCTACG+GGG 0.749113 3_4:-70519106 None:intergenic
TGATGCACGGATGCACAGAG+GGG 0.795188 3_4:-70518264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATTCAAATTACTTT+AGG - chr3_4:70517349-70517368 None:intergenic 10.0%
!! AATAATAAAACATCTTTATA+AGG + chr3_4:70517360-70517379 Msa0518680:intron 10.0%
!!! CTTTTTTTTTAATATATAGA+TGG + chr3_4:70517441-70517460 Msa0518680:intron 10.0%
!! AAAAAAAAAGCTTTCAATTT+GGG - chr3_4:70517431-70517450 None:intergenic 15.0%
!! TAAAAAAAAAGCTTTCAATT+TGG - chr3_4:70517432-70517451 None:intergenic 15.0%
!! TAAGTATAATTTATTCTGTT+TGG + chr3_4:70517600-70517619 Msa0518680:intron 15.0%
!!! TATTGAAGATTAATTTTGAT+AGG - chr3_4:70518180-70518199 None:intergenic 15.0%
!! AAAGTTTCCAATTTATATAT+GGG + chr3_4:70518722-70518741 Msa0518680:intron 15.0%
!! ATTATTAGTTAATGGTATTA+TGG - chr3_4:70518767-70518786 None:intergenic 15.0%
!!! TGATTTTTACTTCTTAATAA+AGG - chr3_4:70519010-70519029 None:intergenic 15.0%
!! TTTATTAAGAAGTAAAAATC+AGG + chr3_4:70519009-70519028 Msa0518680:intron 15.0%
!! AACAAAGAGAATGTAAAAAA+AGG - chr3_4:70517212-70517231 None:intergenic 20.0%
!!! TTCATTTTTTTTGTTTCCTT+CGG + chr3_4:70517233-70517252 Msa0518680:intron 20.0%
!! TAAAATAACAGAACAAAACA+TGG - chr3_4:70517321-70517340 None:intergenic 20.0%
!! ATTATTCAAATTACTTTAGG+AGG - chr3_4:70517346-70517365 None:intergenic 20.0%
!! ACAAAGAAAAACATGATTAT+GGG - chr3_4:70517398-70517417 None:intergenic 20.0%
!!! AATTTTGTCACCTTAAAAAA+TGG - chr3_4:70517536-70517555 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG + chr3_4:70517570-70517589 Msa0518680:intron 20.0%
!! AATCAATTGTAAAAACCAAT+TGG - chr3_4:70517764-70517783 None:intergenic 20.0%
!! GTGATTGAACAATAAATTTA+AGG - chr3_4:70517792-70517811 None:intergenic 20.0%
!!! CATTCAAAATCATTTTTTGT+TGG + chr3_4:70517828-70517847 Msa0518680:intron 20.0%
!!! ATATTTTCTTGATATTGACA+CGG + chr3_4:70517952-70517971 Msa0518680:CDS 20.0%
!! GAAAGTTTCCAATTTATATA+TGG + chr3_4:70518721-70518740 Msa0518680:intron 20.0%
!! AAGTTTCCAATTTATATATG+GGG + chr3_4:70518723-70518742 Msa0518680:intron 20.0%
!! TAAACTACTATTCTAAGTTT+GGG + chr3_4:70518821-70518840 Msa0518680:intron 20.0%
!! TTAATAAAGGATTAAGTGTA+TGG - chr3_4:70518997-70519016 None:intergenic 20.0%
!! AACTACATATGGAAATAAAA+CGG - chr3_4:70519702-70519721 None:intergenic 20.0%
!! AAAGATAAAGCAAAAAAAAG+TGG - chr3_4:70520195-70520214 None:intergenic 20.0%
!! TAACATGATATGTTGTTATA+TGG - chr3_4:70520608-70520627 None:intergenic 20.0%
! GACAAAGAAAAACATGATTA+TGG - chr3_4:70517399-70517418 None:intergenic 25.0%
!! AATCATATCAAGTGATTTTG+TGG + chr3_4:70517478-70517497 Msa0518680:intron 25.0%
! AACATACACATAAATTGGAA+CGG - chr3_4:70517506-70517525 None:intergenic 25.0%
! CCTATAACATACACATAAAT+TGG - chr3_4:70517511-70517530 None:intergenic 25.0%
! CCAATTTATGTGTATGTTAT+AGG + chr3_4:70517508-70517527 Msa0518680:intron 25.0%
!!! GTTATAGGTTCCATTTTTTA+AGG + chr3_4:70517523-70517542 Msa0518680:intron 25.0%
!!! AAGGTGACAAAATTGATTTT+AGG + chr3_4:70517542-70517561 Msa0518680:intron 25.0%
!!! AGGTGACAAAATTGATTTTA+GGG + chr3_4:70517543-70517562 Msa0518680:intron 25.0%
! TATAACATAAAGCTAGAAGT+TGG + chr3_4:70517637-70517656 Msa0518680:intron 25.0%
!! AATTTACCGCAATTTAAAAC+AGG - chr3_4:70517665-70517684 None:intergenic 25.0%
!!! TCAAAATCATTTTTTGTTGG+CGG + chr3_4:70517831-70517850 Msa0518680:intron 25.0%
! TATAATGTGACTATCAACAT+TGG + chr3_4:70517914-70517933 Msa0518680:CDS 25.0%
! ATAATGTGACTATCAACATT+GGG + chr3_4:70517915-70517934 Msa0518680:CDS 25.0%
! GTGTCAATATCAAGAAAATA+TGG - chr3_4:70517953-70517972 None:intergenic 25.0%
!! TATTTTCTTGATATTGACAC+GGG + chr3_4:70517953-70517972 Msa0518680:CDS 25.0%
!!! TTCAAAGTTGTTAATTTGCT+AGG - chr3_4:70518072-70518091 None:intergenic 25.0%
! CTAATCTCATTTCAAGAAAA+AGG - chr3_4:70518103-70518122 None:intergenic 25.0%
! TATGTTCTCAACTTTACAAA+TGG + chr3_4:70518384-70518403 Msa0518680:CDS 25.0%
! AGTATGTAAAAGCCTATTTA+AGG - chr3_4:70518469-70518488 None:intergenic 25.0%
!!! TTTGTTTTCATAAACTATCC+CGG + chr3_4:70518626-70518645 Msa0518680:intron 25.0%
! GTTTAGAAATAAGAACTTGA+TGG - chr3_4:70518806-70518825 None:intergenic 25.0%
! CTAAACTACTATTCTAAGTT+TGG + chr3_4:70518820-70518839 Msa0518680:intron 25.0%
! TTATCAAGCACTAATTTCTT+GGG + chr3_4:70519491-70519510 Msa0518680:CDS 25.0%
!! TTTAAAATGCTTGAATTTCG+AGG - chr3_4:70519543-70519562 None:intergenic 25.0%
! TCACTAATACGAGAAAATAT+TGG + chr3_4:70519654-70519673 Msa0518680:intron 25.0%
! ACTTCATATACACTTCTAAA+AGG - chr3_4:70519804-70519823 None:intergenic 25.0%
!! AATTGATAATATCCGTTAAC+AGG - chr3_4:70520159-70520178 None:intergenic 25.0%
! TTTGATTACGAAAGATACAT+CGG + chr3_4:70520379-70520398 Msa0518680:exon 25.0%
! TATATCGTGTTCTATAAAGT+GGG - chr3_4:70520455-70520474 None:intergenic 25.0%
! ATATATCGTGTTCTATAAAG+TGG - chr3_4:70520456-70520475 None:intergenic 25.0%
! ACTTTATAGAACACGATATA+TGG + chr3_4:70520455-70520474 Msa0518680:three_prime_UTR 25.0%
AATAGAGAAATCATGAAGTC+AGG + chr3_4:70516929-70516948 Msa0518680:exon 30.0%
ATAGAGAAATCATGAAGTCA+GGG + chr3_4:70516930-70516949 Msa0518680:exon 30.0%
!! ATTTCAAGTTCAAGTGCAAA+TGG + chr3_4:70517040-70517059 Msa0518680:CDS 30.0%
AGGTTGTTCATATGAAAGAA+TGG - chr3_4:70517074-70517093 None:intergenic 30.0%
ATGGAAATGTTTATCCTGTT+GGG + chr3_4:70517170-70517189 Msa0518680:CDS 30.0%
ATAACAGAACAAAACATGGA+GGG - chr3_4:70517317-70517336 None:intergenic 30.0%
AATAACAGAACAAAACATGG+AGG - chr3_4:70517318-70517337 None:intergenic 30.0%
AGAAAAACATGATTATGGGA+AGG - chr3_4:70517394-70517413 None:intergenic 30.0%
ACATACACATAAATTGGAAC+GGG - chr3_4:70517505-70517524 None:intergenic 30.0%
!! GGTGACAAAATTGATTTTAG+GGG + chr3_4:70517544-70517563 Msa0518680:intron 30.0%
CCTGCATATGTTAAAAGTAA+GGG - chr3_4:70517891-70517910 None:intergenic 30.0%
ACCTGCATATGTTAAAAGTA+AGG - chr3_4:70517892-70517911 None:intergenic 30.0%
ATATCAAGAAAATATGGCCT+TGG - chr3_4:70517947-70517966 None:intergenic 30.0%
! TGCTAGGTAATTTTGAATGT+TGG - chr3_4:70518056-70518075 None:intergenic 30.0%
CAGACATACATATATCTATC+TGG - chr3_4:70518134-70518153 None:intergenic 30.0%
!!! TTTAGGTTTTTAGTCCTAGT+TGG + chr3_4:70518506-70518525 Msa0518680:intron 30.0%
! CTTATTTCCATTATTTCTCC+GGG - chr3_4:70518647-70518666 None:intergenic 30.0%
! CCTTATTTCCATTATTTCTC+CGG - chr3_4:70518648-70518667 None:intergenic 30.0%
TGTAAGCCCCATATATAAAT+TGG - chr3_4:70518732-70518751 None:intergenic 30.0%
TTGAATCTATCTACTGACAT+AGG - chr3_4:70518878-70518897 None:intergenic 30.0%
AGAACATACACAGAGATATT+TGG - chr3_4:70518911-70518930 None:intergenic 30.0%
AAATATCTCTGTGTATGTTC+TGG + chr3_4:70518910-70518929 Msa0518680:intron 30.0%
!!! GCTATCTAGTACAACTTTTT+TGG + chr3_4:70519031-70519050 Msa0518680:intron 30.0%
!! TTGGTTATTTTATGCAGATG+CGG + chr3_4:70519050-70519069 Msa0518680:intron 30.0%
TGTTTATGATTCTTCTCGAT+TGG + chr3_4:70519241-70519260 Msa0518680:CDS 30.0%
CTTATCAAGCACTAATTTCT+TGG + chr3_4:70519490-70519509 Msa0518680:CDS 30.0%
GATATAATCAGATATGCTTC+AGG - chr3_4:70519900-70519919 None:intergenic 30.0%
! CTTGAAGAAAGTGATTAGTT+AGG - chr3_4:70519935-70519954 None:intergenic 30.0%
AAATTGTTCTTCCAGAACAT+GGG + chr3_4:70520027-70520046 Msa0518680:intron 30.0%
! ACAATGAAAAGCAGTTGATA+GGG + chr3_4:70520307-70520326 Msa0518680:CDS 30.0%
TAATCAAATGCTGACATCTT+TGG - chr3_4:70520367-70520386 None:intergenic 30.0%
ATGTAAACTGATTAACTGAG+TGG - chr3_4:70520405-70520424 None:intergenic 30.0%
ACGATATATGGTTGTATGAA+AGG + chr3_4:70520467-70520486 Msa0518680:three_prime_UTR 30.0%
GTGCATAGTATATTGTTAAG+TGG + chr3_4:70520519-70520538 Msa0518680:three_prime_UTR 30.0%
TATTGTTAAGTGGCATATAG+AGG + chr3_4:70520529-70520548 Msa0518680:three_prime_UTR 30.0%
! ATCATGTTAGTTTGATTGCA+CGG + chr3_4:70520619-70520638 Msa0518680:three_prime_UTR 30.0%
! TTGGGGATTTCATTTAGAAT+TGG + chr3_4:70520644-70520663 Msa0518680:three_prime_UTR 30.0%
AGAAAACTGAGACTATGTTG+TGG - chr3_4:70516872-70516891 None:intergenic 35.0%
AATCATGAAGTCAGGGAAAT+TGG + chr3_4:70516937-70516956 Msa0518680:exon 35.0%
AAACCAAGCTAAACAAGTAG+AGG - chr3_4:70516993-70517012 None:intergenic 35.0%
!! TCTACTTGTTTAGCTTGGTT+TGG + chr3_4:70516992-70517011 Msa0518680:CDS 35.0%
CGAAAACGATTCAAGAATGA+AGG - chr3_4:70517121-70517140 None:intergenic 35.0%
! TTCTTGAATCGTTTTCGTTC+TGG + chr3_4:70517124-70517143 Msa0518680:CDS 35.0%
GATAAACATTTCCATGAACC+GGG - chr3_4:70517165-70517184 None:intergenic 35.0%
GGATAAACATTTCCATGAAC+CGG - chr3_4:70517166-70517185 None:intergenic 35.0%
CATGGAAATGTTTATCCTGT+TGG + chr3_4:70517169-70517188 Msa0518680:CDS 35.0%
TTTATGCCTTTCTTTCTCCT+AGG + chr3_4:70517262-70517281 Msa0518680:intron 35.0%
! TCTTCATGCCTTTTCCTATT+TGG + chr3_4:70517291-70517310 Msa0518680:intron 35.0%
!! TTGGTGCCTGTTTTAAATTG+CGG + chr3_4:70517656-70517675 Msa0518680:intron 35.0%
CATTGAGTTTCTCGAAATCA+TGG - chr3_4:70517725-70517744 None:intergenic 35.0%
!! CCCTTACTTTTAACATATGC+AGG + chr3_4:70517888-70517907 Msa0518680:intron 35.0%
AGTCCAACTTAAAGTTCGTA+TGG + chr3_4:70518407-70518426 Msa0518680:CDS 35.0%
TTAAAGTTCGTATGGCACTT+GGG + chr3_4:70518415-70518434 Msa0518680:CDS 35.0%
AAAACCTAAAGAAGTGAGAG+TGG - chr3_4:70518496-70518515 None:intergenic 35.0%
AAACTATCCCGGAGAAATAA+TGG + chr3_4:70518637-70518656 Msa0518680:intron 35.0%
! CCGGAGAAATAATGGAAATA+AGG + chr3_4:70518645-70518664 Msa0518680:intron 35.0%
!! TATTGGCTCATTGCTTAACA+CGG + chr3_4:70519671-70519690 Msa0518680:intron 35.0%
TTTCCATATGTAGTTGACGA+AGG + chr3_4:70519707-70519726 Msa0518680:intron 35.0%
ATTCCTTCGTCAACTACATA+TGG - chr3_4:70519713-70519732 None:intergenic 35.0%
! TCTTCAGGTGCTTCTTTTAT+GGG - chr3_4:70519747-70519766 None:intergenic 35.0%
! CTTTTTCCATACCAACATAG+AGG - chr3_4:70519780-70519799 None:intergenic 35.0%
TAATCAGATATGCTTCAGGA+GGG - chr3_4:70519896-70519915 None:intergenic 35.0%
ATAATCAGATATGCTTCAGG+AGG - chr3_4:70519897-70519916 None:intergenic 35.0%
CAAATTGTTCTTCCAGAACA+TGG + chr3_4:70520026-70520045 Msa0518680:intron 35.0%
AACATGGGAAATGTTTGCTT+GGG + chr3_4:70520042-70520061 Msa0518680:CDS 35.0%
GTGGAAGATGTAAACCTAAT+CGG + chr3_4:70520090-70520109 Msa0518680:CDS 35.0%
! GCATAGTTCATCAAGAGTTT+TGG - chr3_4:70520221-70520240 None:intergenic 35.0%
GACAATGAAAAGCAGTTGAT+AGG + chr3_4:70520306-70520325 Msa0518680:CDS 35.0%
!!! CATCTTTGGATTTTGGAACT+CGG - chr3_4:70520353-70520372 None:intergenic 35.0%
! ATGCTGACATCTTTGGATTT+TGG - chr3_4:70520360-70520379 None:intergenic 35.0%
GTTCCTCTACTTGTTTAGCT+TGG + chr3_4:70516987-70517006 Msa0518680:CDS 40.0%
!!! TCGTTTTCGTTCTGGTTCAT+CGG + chr3_4:70517132-70517151 Msa0518680:CDS 40.0%
! GTTCTTTTTACGTACCCAAC+AGG - chr3_4:70517187-70517206 None:intergenic 40.0%
AAGGCATAAAGTGAAACCGA+AGG - chr3_4:70517252-70517271 None:intergenic 40.0%
AAGCAACCTAGGAGAAAGAA+AGG - chr3_4:70517271-70517290 None:intergenic 40.0%
GAGTTCGAATATGCACCAAT+TGG + chr3_4:70517746-70517765 Msa0518680:intron 40.0%
! CAAGAAAATATGGCCTTGGT+GGG - chr3_4:70517943-70517962 None:intergenic 40.0%
! TCAAGAAAATATGGCCTTGG+TGG - chr3_4:70517944-70517963 None:intergenic 40.0%
CATCACATTGAAGCCATGTT+AGG - chr3_4:70517985-70518004 None:intergenic 40.0%
GCAGATCATTACTCATCTCT+TGG + chr3_4:70518342-70518361 Msa0518680:CDS 40.0%
GTGCCATACGAACTTTAAGT+TGG - chr3_4:70518413-70518432 None:intergenic 40.0%
CTTAAAGTTCGTATGGCACT+TGG + chr3_4:70518414-70518433 Msa0518680:CDS 40.0%
!! ACCCTTTGCTAGCCTTAAAT+AGG + chr3_4:70518454-70518473 Msa0518680:intron 40.0%
! GCCTATTTAAGGCTAGCAAA+GGG - chr3_4:70518458-70518477 None:intergenic 40.0%
! AGCCTATTTAAGGCTAGCAA+AGG - chr3_4:70518459-70518478 None:intergenic 40.0%
CATACCACTCTCACTTCTTT+AGG + chr3_4:70518489-70518508 Msa0518680:intron 40.0%
AACGCTTATGCTATCCAACT+AGG - chr3_4:70518523-70518542 None:intergenic 40.0%
GTGTCAGAAGTTGTAACAAC+AGG + chr3_4:70518686-70518705 Msa0518680:intron 40.0%
TACTGACATAGGCATTTGTG+AGG - chr3_4:70518867-70518886 None:intergenic 40.0%
! CTGAAACACTTGTTGCAGAA+AGG - chr3_4:70518946-70518965 None:intergenic 40.0%
ATTCAGCTGTGATATCAAGC+TGG - chr3_4:70519147-70519166 None:intergenic 40.0%
AGCTTGATATCACAGCTGAA+TGG + chr3_4:70519146-70519165 Msa0518680:CDS 40.0%
ATATCACAGCTGAATGGTCA+GGG + chr3_4:70519152-70519171 Msa0518680:CDS 40.0%
GGTTTAGTGAGAAATGTCGT+TGG + chr3_4:70519173-70519192 Msa0518680:CDS 40.0%
! ATGATTCTTCTCGATTGGCT+TGG + chr3_4:70519246-70519265 Msa0518680:CDS 40.0%
TACTAATCTCTCGACGACAT+TGG - chr3_4:70519275-70519294 None:intergenic 40.0%
TCAGCAAACATTACTCAGCA+GGG + chr3_4:70519370-70519389 Msa0518680:intron 40.0%
!!! TTCTTGCTGTTTTTGACGCT+GGG + chr3_4:70519439-70519458 Msa0518680:CDS 40.0%
!! CGTTGACATAGTCTTGTTTG+TGG - chr3_4:70519581-70519600 None:intergenic 40.0%
TAGTTGACGAAGGAATTAGC+TGG + chr3_4:70519717-70519736 Msa0518680:intron 40.0%
! GTCTTCAGGTGCTTCTTTTA+TGG - chr3_4:70519748-70519767 None:intergenic 40.0%
ACCAAACTCTTCCTCTATGT+TGG + chr3_4:70519766-70519785 Msa0518680:CDS 40.0%
ACCAACATAGAGGAAGAGTT+TGG - chr3_4:70519770-70519789 None:intergenic 40.0%
ACTCTTCCTCTATGTTGGTA+TGG + chr3_4:70519771-70519790 Msa0518680:CDS 40.0%
TTCAGGAGGGATTTCGAATT+GGG - chr3_4:70519883-70519902 None:intergenic 40.0%
AGCAAACATTTCCCATGTTC+TGG - chr3_4:70520041-70520060 None:intergenic 40.0%
GAACATGGGAAATGTTTGCT+TGG + chr3_4:70520041-70520060 Msa0518680:intron 40.0%
GAAGATGTAAACCTAATCGG+AGG + chr3_4:70520093-70520112 Msa0518680:CDS 40.0%
ATGTAAACCTAATCGGAGGT+AGG + chr3_4:70520097-70520116 Msa0518680:intron 40.0%
CTGATGCTTGTTCCTGTTAA+CGG + chr3_4:70520144-70520163 Msa0518680:intron 40.0%
ATGGATATGTCTGCATACAC+AGG - chr3_4:70520264-70520283 None:intergenic 40.0%
ATCCATGCTAGACAAAGTGA+TGG + chr3_4:70520278-70520297 Msa0518680:CDS 40.0%
TACCATCACTTTGTCTAGCA+TGG - chr3_4:70520283-70520302 None:intergenic 40.0%
!! ATGAAAAGCAGTTGATAGGG+TGG + chr3_4:70520310-70520329 Msa0518680:CDS 40.0%
! TTAGTTTGATTGCACGGCAT+TGG + chr3_4:70520625-70520644 Msa0518680:three_prime_UTR 40.0%
TAGTTTGATTGCACGGCATT+GGG + chr3_4:70520626-70520645 Msa0518680:three_prime_UTR 40.0%
AGGCATGAAGAAAGCAACCT+AGG - chr3_4:70517282-70517301 None:intergenic 45.0%
ATGGAGGGCCAAATAGGAAA+AGG - chr3_4:70517302-70517321 None:intergenic 45.0%
CAAAACATGGAGGGCCAAAT+AGG - chr3_4:70517308-70517327 None:intergenic 45.0%
CATGGGACTAAGTCATTGCT+AGG - chr3_4:70518237-70518256 None:intergenic 45.0%
GTAGTTATCCGTGTGATGCA+CGG - chr3_4:70518280-70518299 None:intergenic 45.0%
AAGGCCAAGCATTCCATCTA+CGG - chr3_4:70519111-70519130 None:intergenic 45.0%
GATATCACAGCTGAATGGTC+AGG + chr3_4:70519151-70519170 Msa0518680:CDS 45.0%
CTCAGCAAACATTACTCAGC+AGG + chr3_4:70519369-70519388 Msa0518680:intron 45.0%
CAGCAAACATTACTCAGCAG+GGG + chr3_4:70519371-70519390 Msa0518680:intron 45.0%
AGCAAACATTACTCAGCAGG+GGG + chr3_4:70519372-70519391 Msa0518680:intron 45.0%
! GAGCTGAACTTGTTCTTGGA+GGG + chr3_4:70519394-70519413 Msa0518680:CDS 45.0%
! AACTTGTTCTTGGAGGGAAG+AGG + chr3_4:70519400-70519419 Msa0518680:CDS 45.0%
!!! CTTCTTGCTGTTTTTGACGC+TGG + chr3_4:70519438-70519457 Msa0518680:CDS 45.0%
! AGAGGAAGAGTTTGGTCTTC+AGG - chr3_4:70519762-70519781 None:intergenic 45.0%
CTTTCGATCTTCCACTTCCT+GGG - chr3_4:70519860-70519879 None:intergenic 45.0%
CTTCAGGAGGGATTTCGAAT+TGG - chr3_4:70519884-70519903 None:intergenic 45.0%
!! TGTCAGCATCGACACATGTA+AGG - chr3_4:70520008-70520027 None:intergenic 45.0%
GTTTGCTTGGGCATTCTAGA+CGG + chr3_4:70520054-70520073 Msa0518680:CDS 45.0%
!! ATTCTAGACGGCTCTGAAGT+AGG + chr3_4:70520066-70520085 Msa0518680:CDS 45.0%
AACCTAATCGGAGGTAGGAA+TGG + chr3_4:70520102-70520121 Msa0518680:intron 45.0%
TGGCTGATCACTTTGTCAGT+TGG - chr3_4:70520588-70520607 None:intergenic 45.0%
AGTTTGATTGCACGGCATTG+GGG + chr3_4:70520627-70520646 Msa0518680:three_prime_UTR 45.0%
!!! TTTTTTTTTAATATATAGAT+GGG + chr3_4:70517442-70517461 Msa0518680:intron 5.0%
!! TAAATAATATTATTAGTTAA+TGG - chr3_4:70518775-70518794 None:intergenic 5.0%
! TGGTTCATCGGTTGTGTTCC+CGG + chr3_4:70517144-70517163 Msa0518680:CDS 50.0%
TCAACATTGGGTACCCACCA+AGG + chr3_4:70517927-70517946 Msa0518680:CDS 50.0%
AGACACCACATCCGCTTTAC+CGG + chr3_4:70518211-70518230 Msa0518680:intron 50.0%
TCATTGCTAGGCCGGTAAAG+CGG - chr3_4:70518225-70518244 None:intergenic 50.0%
GGACTAAGTCATTGCTAGGC+CGG - chr3_4:70518233-70518252 None:intergenic 50.0%
GCAATGACTTAGTCCCATGC+AGG + chr3_4:70518238-70518257 Msa0518680:CDS 50.0%
AGGCCAAGCATTCCATCTAC+GGG - chr3_4:70519110-70519129 None:intergenic 50.0%
GTAGATGGAATGCTTGGCCT+TGG + chr3_4:70519110-70519129 Msa0518680:CDS 50.0%
GGACACTGTTTGAGTGCACA+AGG + chr3_4:70519194-70519213 Msa0518680:CDS 50.0%
CACTGTTTGAGTGCACAAGG+CGG + chr3_4:70519197-70519216 Msa0518680:CDS 50.0%
GGCGGAGGATACATCTTCTT+TGG + chr3_4:70519215-70519234 Msa0518680:CDS 50.0%
! GGAGCTGAACTTGTTCTTGG+AGG + chr3_4:70519393-70519412 Msa0518680:CDS 50.0%
TTCTTGGAGGGAAGAGGACT+GGG + chr3_4:70519406-70519425 Msa0518680:CDS 50.0%
CCTGGGAAGCTAAGTGCAAT+AGG - chr3_4:70519843-70519862 None:intergenic 50.0%
CCTATTGCACTTAGCTTCCC+AGG + chr3_4:70519840-70519859 Msa0518680:CDS 50.0%
GCTTTCGATCTTCCACTTCC+TGG - chr3_4:70519861-70519880 None:intergenic 50.0%
TGTCTGCATACACAGGACGA+GGG - chr3_4:70520257-70520276 None:intergenic 50.0%
ATGTCTGCATACACAGGACG+AGG - chr3_4:70520258-70520277 None:intergenic 50.0%
GATGACGACGACGACGATGA+AGG - chr3_4:70517094-70517113 None:intergenic 55.0%
TCGGTTGTGTTCCCGGTTCA+TGG + chr3_4:70517151-70517170 Msa0518680:CDS 55.0%
ACACGGGTAGCGACCTAACA+TGG + chr3_4:70517969-70517988 Msa0518680:CDS 55.0%
ACCTGAGAGCAACGCGAACA+AGG - chr3_4:70518010-70518029 None:intergenic 55.0%
TGATGCACGGATGCACAGAG+GGG - chr3_4:70518267-70518286 None:intergenic 55.0%
GTGATGCACGGATGCACAGA+GGG - chr3_4:70518268-70518287 None:intergenic 55.0%
TGTGATGCACGGATGCACAG+AGG - chr3_4:70518269-70518288 None:intergenic 55.0%
CTGTGCATCCGTGCATCACA+CGG + chr3_4:70518269-70518288 Msa0518680:CDS 55.0%
ACGGGGTGGTAGGAAGAATC+TGG - chr3_4:70519092-70519111 None:intergenic 55.0%
TCTTCCTACCACCCCGTAGA+TGG + chr3_4:70519095-70519114 Msa0518680:CDS 55.0%
CATTCCATCTACGGGGTGGT+AGG - chr3_4:70519102-70519121 None:intergenic 55.0%
CAAGCATTCCATCTACGGGG+TGG - chr3_4:70519106-70519125 None:intergenic 55.0%
CACCCCGTAGATGGAATGCT+TGG + chr3_4:70519104-70519123 Msa0518680:CDS 55.0%
GGCCAAGCATTCCATCTACG+GGG - chr3_4:70519109-70519128 None:intergenic 55.0%
!! ATGGAATGCTTGGCCTTGGC+AGG + chr3_4:70519114-70519133 Msa0518680:CDS 55.0%
!! TGGAATGCTTGGCCTTGGCA+GGG + chr3_4:70519115-70519134 Msa0518680:CDS 55.0%
! AGCTGGATTTTCCCCTGCCA+AGG - chr3_4:70519130-70519149 None:intergenic 55.0%
TGTTTGAGTGCACAAGGCGG+AGG + chr3_4:70519200-70519219 Msa0518680:CDS 55.0%
! GGGGGAGCTGAACTTGTTCT+TGG + chr3_4:70519390-70519409 Msa0518680:CDS 55.0%
GTTCTTGGAGGGAAGAGGAC+TGG + chr3_4:70519405-70519424 Msa0518680:CDS 55.0%
GCACTTAGCTTCCCAGGAAG+TGG + chr3_4:70519846-70519865 Msa0518680:CDS 55.0%
!! AGACGGCTCTGAAGTAGGAG+TGG + chr3_4:70520071-70520090 Msa0518680:CDS 55.0%
CGCCATTCCTACCTCCGATT+AGG - chr3_4:70520107-70520126 None:intergenic 55.0%
! GCCTTGTTCGCGTTGCTCTC+AGG + chr3_4:70518006-70518025 Msa0518680:CDS 60.0%
CTAGGCCGGTAAAGCGGATG+TGG - chr3_4:70518219-70518238 None:intergenic 60.0%
CACAGAGGGGATGCCTGCAT+GGG - chr3_4:70518254-70518273 None:intergenic 60.0%
!! GGAATGCTTGGCCTTGGCAG+GGG + chr3_4:70519116-70519135 Msa0518680:CDS 60.0%
GGAGGGAAGAGGACTGGGTT+TGG + chr3_4:70519411-70519430 Msa0518680:CDS 60.0%
GCACAGAGGGGATGCCTGCA+TGG - chr3_4:70518255-70518274 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70516843 70520696 70516843 ID=Msa0518680;Name=Msa0518680
chr3_4 mRNA 70516843 70520696 70516843 ID=Msa0518680-mRNA-1;Parent=Msa0518680;Name=Msa0518680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=98|1|1|1|1|1|8|313|446
chr3_4 exon 70516843 70517191 70516843 ID=Msa0518680-mRNA-1:exon:19183;Parent=Msa0518680-mRNA-1
chr3_4 exon 70517910 70518027 70517910 ID=Msa0518680-mRNA-1:exon:19184;Parent=Msa0518680-mRNA-1
chr3_4 exon 70518213 70518436 70518213 ID=Msa0518680-mRNA-1:exon:19185;Parent=Msa0518680-mRNA-1
chr3_4 exon 70519067 70519291 70519067 ID=Msa0518680-mRNA-1:exon:19186;Parent=Msa0518680-mRNA-1
chr3_4 exon 70519374 70519512 70519374 ID=Msa0518680-mRNA-1:exon:19187;Parent=Msa0518680-mRNA-1
chr3_4 exon 70519720 70519920 70519720 ID=Msa0518680-mRNA-1:exon:19188;Parent=Msa0518680-mRNA-1
chr3_4 exon 70520042 70520114 70520042 ID=Msa0518680-mRNA-1:exon:19189;Parent=Msa0518680-mRNA-1
chr3_4 exon 70520274 70520696 70520274 ID=Msa0518680-mRNA-1:exon:19190;Parent=Msa0518680-mRNA-1
chr3_4 five_prime_UTR 70516843 70516940 70516843 ID=Msa0518680-mRNA-1:five_prime_utr;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70516941 70517191 70516941 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70517910 70518027 70517910 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70518213 70518436 70518213 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70519067 70519291 70519067 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70519374 70519512 70519374 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70519720 70519920 70519720 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70520042 70520114 70520042 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 CDS 70520274 70520383 70520274 ID=Msa0518680-mRNA-1:cds;Parent=Msa0518680-mRNA-1
chr3_4 three_prime_UTR 70520384 70520696 70520384 ID=Msa0518680-mRNA-1:three_prime_utr;Parent=Msa0518680-mRNA-1
Gene Sequence

>Msa0518680

ATGAAGTCAGGGAAATTGGTATTCTTTGTTGTTCTACTCTTGTTGAGTTCCTCTACTTGTTTAGCTTGGTTTGGTAGTAGTAGTAGTAGCAAACACAAAATTTCAAGTTCAAGTGCAAATGGAAGAAACTCCATTCTTTCATATGAACAACCTTCATCGTCGTCGTCGTCATCATCGCCTTCATTCTTGAATCGTTTTCGTTCTGGTTCATCGGTTGTGTTCCCGGTTCATGGAAATGTTTATCCTGTTGGGTTTTATAATGTGACTATCAACATTGGGTACCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTAACATGGCTTCAATGTGATGCGCCTTGTTCGCGTTGCTCTCAGACACCACATCCGCTTTACCGGCCTAGCAATGACTTAGTCCCATGCAGGCATCCCCTCTGTGCATCCGTGCATCACACGGATAACTACGACTGTGAAGTCGAGCATCAGTGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCTCTTGGTGTACTTGTCAATGATGTTTATGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGATGCGGCTATGATCAGATTTTTCCAGATTCTTCCTACCACCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGAAAATCCAGCTTGATATCACAGCTGAATGGTCAGGGTTTAGTGAGAAATGTCGTTGGACACTGTTTGAGTGCACAAGGCGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGGCTTGGACTCCAATGTCGTCGAGAGATTACAAACATTACTCAGCAGGGGGAGCTGAACTTGTTCTTGGAGGGAAGAGGACTGGGTTTGGAAATCTTCTTGCTGTTTTTGACGCTGGGAGTTCTTATACTTACTTCAACTCTAATGCTTATCAAGCACTAATTTCTTGGTTGACGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGACCAAACTCTTCCTCTATGTTGGTATGGAAAAAGACCTTTTAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCTATTGCACTTAGCTTCCCAGGAAGTGGAAGATCGAAAGCCCAATTCGAAATCCCTCCTGAAGCATATCTGATTATATCAAACATGGGAAATGTTTGCTTGGGCATTCTAGACGGCTCTGAAGTAGGAGTGGAAGATGTAAACCTAATCGGAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAAAAGCAGTTGATAGGGTGGACAGCAGCAGATTGTAACCGAGTTCCAAAATCCAAAGATGTCAGCATTTGA
Protein sequence

>Msa0518680

MKSGKLVFFVVLLLLSSSTCLAWFGSSSSSKHKISSSSANGRNSILSYEQPSSSSSSSSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTINIGYPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASVHHTDNYDCEVEHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNGQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPMSSRDYKHYSAGGAELVLGGKRTGFGNLLAVFDAGSSYTYFNSNAYQALISWLTKELAGKPIKEAPEDQTLPLCWYGKRPFRSVYEVRKYFKPIALSFPGSGRSKAQFEIPPEAYLIISNMGNVCLGILDGSEVGVEDVNLIGDISMLDKVMVFDNEKQLIGWTAADCNRVPKSKDVSI*