Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249660 | XP_013464064.1 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249660 | sp|O65220|CPY28_ARATH | 63.604 | 283 | 90 | 6 | 19 | 296 | 7 | 281 | 1.96e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249660 | A0A072V7R3 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0206630 | Msa0249660 | 0.904650 | 9.829093e-80 | -8.615850e-47 |
| Msa0249660 | Msa0288010 | 0.843919 | 1.041744e-58 | -8.615850e-47 |
| Msa0249660 | Msa0369420 | -0.807197 | 5.684705e-50 | -8.615850e-47 |
| Msa0249660 | Msa0549460 | -0.812074 | 5.090727e-51 | -8.615850e-47 |
| Msa0249660 | Msa0630770 | 0.823691 | 1.208518e-53 | -8.615850e-47 |
| Msa0249660 | Msa0685640 | -0.816167 | 6.357742e-52 | -8.615850e-47 |
| Msa0249660 | Msa1074210 | -0.805759 | 1.143096e-49 | -8.615850e-47 |
| Msa0249660 | Msa1114680 | -0.802658 | 5.053200e-49 | -8.615850e-47 |
| Msa0249660 | Msa1131680 | -0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0249660 | Msa1190100 | 0.824395 | 8.260945e-54 | -8.615850e-47 |
| Msa0249660 | Msa1208450 | 0.812123 | 4.966718e-51 | -8.615850e-47 |
| Msa0249660 | Msa1236110 | 0.810602 | 1.062573e-50 | -8.615850e-47 |
| Msa0249660 | Msa1268230 | -0.818633 | 1.770253e-52 | -8.615850e-47 |
| Msa0249660 | Msa1340200 | -0.816226 | 6.168158e-52 | -8.615850e-47 |
| Msa0249660 | Msa1363820 | 0.804444 | 2.153827e-49 | -8.615850e-47 |
| Msa0249660 | Msa1377790 | -0.806386 | 8.435308e-50 | -8.615850e-47 |
| Msa0249660 | Msa1464090 | -0.826213 | 3.068167e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249660 | MtrunA17_Chr2g0305071 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 588 |
| Msa0249660 | MtrunA17_Chr4g0037281 | 27.234 | 235 | 111 | 9 | 29 | 247 | 17 | 207 | 7.83e-17 | 77.8 |
| Msa0249660 | MtrunA17_Chr1g0213971 | 28.049 | 246 | 115 | 10 | 42 | 287 | 61 | 244 | 8.66e-17 | 78.2 |
| Msa0249660 | MtrunA17_Chr1g0193711 | 26.638 | 229 | 139 | 7 | 26 | 244 | 25 | 234 | 5.98e-16 | 75.9 |
| Msa0249660 | MtrunA17_Chr7g0270991 | 30.000 | 150 | 86 | 6 | 91 | 240 | 109 | 239 | 4.27e-15 | 73.6 |
| Msa0249660 | MtrunA17_Chr3g0113441 | 28.846 | 156 | 89 | 6 | 87 | 237 | 73 | 211 | 9.13e-14 | 69.3 |
| Msa0249660 | MtrunA17_Chr3g0104751 | 28.931 | 159 | 85 | 6 | 87 | 237 | 43 | 181 | 2.70e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249660 | AT5G35100.1 | 63.604 | 283 | 90 | 6 | 19 | 296 | 16 | 290 | 4.71e-107 | 313 |
| Msa0249660 | AT5G35100.3 | 63.604 | 283 | 90 | 6 | 19 | 296 | 16 | 290 | 4.71e-107 | 313 |
| Msa0249660 | AT5G35100.2 | 56.429 | 280 | 79 | 5 | 19 | 296 | 7 | 245 | 1.88e-89 | 266 |
| Msa0249660 | AT5G13120.2 | 26.122 | 245 | 119 | 10 | 40 | 284 | 68 | 250 | 1.12e-14 | 72.8 |
| Msa0249660 | AT5G13120.1 | 26.122 | 245 | 119 | 10 | 40 | 284 | 72 | 254 | 1.25e-14 | 72.8 |
| Msa0249660 | AT2G29960.1 | 29.560 | 159 | 84 | 6 | 87 | 237 | 41 | 179 | 2.53e-14 | 70.9 |
| Msa0249660 | AT2G29960.3 | 29.560 | 159 | 84 | 6 | 87 | 237 | 41 | 179 | 2.53e-14 | 70.9 |
| Msa0249660 | AT4G34960.1 | 25.000 | 224 | 120 | 9 | 35 | 247 | 21 | 207 | 2.95e-14 | 70.9 |
| Msa0249660 | AT3G55920.1 | 29.139 | 151 | 85 | 6 | 92 | 237 | 73 | 206 | 1.45e-13 | 69.3 |
| Msa0249660 | AT5G58710.1 | 28.125 | 160 | 85 | 7 | 87 | 237 | 44 | 182 | 1.65e-13 | 68.6 |
| Msa0249660 | AT3G62030.3 | 22.059 | 204 | 120 | 6 | 37 | 240 | 73 | 237 | 6.39e-13 | 67.8 |
| Msa0249660 | AT3G62030.1 | 22.632 | 190 | 108 | 6 | 51 | 240 | 88 | 238 | 2.09e-12 | 66.2 |
| Msa0249660 | AT3G56070.1 | 27.711 | 166 | 90 | 7 | 92 | 247 | 18 | 163 | 2.27e-12 | 64.7 |
| Msa0249660 | AT3G56070.2 | 27.711 | 166 | 90 | 7 | 92 | 247 | 18 | 163 | 2.27e-12 | 64.7 |
| Msa0249660 | AT3G62030.2 | 22.632 | 190 | 108 | 6 | 51 | 240 | 141 | 291 | 4.94e-12 | 65.9 |
Find 141 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGGTGGTTGTTGGGTTA+TGG | 0.169130 | 2_2:-36988137 | None:intergenic |
| GATAATAAGAACATTGTCTT+TGG | 0.253576 | 2_2:+36988772 | Msa0249660:CDS |
| TCCAAATGGCACGAGCATTC+TGG | 0.263861 | 2_2:-36990811 | None:intergenic |
| TGAAGCGGAGGAGGAGAGGG+AGG | 0.264086 | 2_2:-36988248 | None:intergenic |
| AAGCGGAGGAGGAGAGGGAG+GGG | 0.264419 | 2_2:-36988246 | None:intergenic |
| ATTCAGCCAAGTCATTAAAT+TGG | 0.265328 | 2_2:-36990769 | None:intergenic |
| AACTCAACATTCCTATATTC+AGG | 0.266466 | 2_2:-36988712 | None:intergenic |
| GTGATGGTGGGTTTGAGAAT+TGG | 0.279398 | 2_2:-36988178 | None:intergenic |
| GGGGAAGGTGAGTGTGGTGG+TGG | 0.282149 | 2_2:-36988227 | None:intergenic |
| AGGGGAGTGGTGGTGGTTGT+TGG | 0.288314 | 2_2:-36988144 | None:intergenic |
| GGAGAGGAGAGGAGTGAGTT+AGG | 0.308125 | 2_2:-36988101 | None:intergenic |
| TGATGGTGGGTTTGAGAATT+GGG | 0.311880 | 2_2:-36988177 | None:intergenic |
| CCAGGTCAGTACTTTCTTGC+TGG | 0.314895 | 2_2:+36988526 | Msa0249660:CDS |
| TGGTGGAGAGAGGGGAGTGG+TGG | 0.336476 | 2_2:-36988154 | None:intergenic |
| TTGTAGGAGGAAGATGAATT+AGG | 0.337127 | 2_2:-36988478 | None:intergenic |
| CGTCAGGGTCGTCCTGAAAA+AGG | 0.349200 | 2_2:+36988550 | Msa0249660:CDS |
| GAAGGTGAGTGTGGTGGTGG+TGG | 0.354143 | 2_2:-36988224 | None:intergenic |
| TGTCGCCGAGGGTGCGATTT+GGG | 0.354816 | 2_2:-36988342 | None:intergenic |
| GTACTTTCTTGCTGGACGTC+AGG | 0.355854 | 2_2:+36988534 | Msa0249660:CDS |
| TGCGTCAGCGCAAACGCCTT+GGG | 0.355863 | 2_2:-36988622 | None:intergenic |
| TGGAGAGAGGGGAGTGGTGG+TGG | 0.359542 | 2_2:-36988151 | None:intergenic |
| GAGGGAGGGGAAGGTGAGTG+TGG | 0.362666 | 2_2:-36988233 | None:intergenic |
| GCGATTTGGGAGGTAGTAGT+TGG | 0.363363 | 2_2:-36988329 | None:intergenic |
| CATCACCGACCGCATCTTCA+TGG | 0.365154 | 2_2:+36988291 | Msa0249660:CDS |
| CGGTCGGTGATGGTGGGGTT+TGG | 0.369425 | 2_2:-36988280 | None:intergenic |
| CCAAATGGCACGAGCATTCT+GGG | 0.369943 | 2_2:-36990810 | None:intergenic |
| CCCAGAATGCTCGTGCCATT+TGG | 0.371104 | 2_2:+36990810 | Msa0249660:CDS |
| GAGAATTGGGTGGTGGAGAG+AGG | 0.373639 | 2_2:-36988164 | None:intergenic |
| GGGGAGTGGTGGTGGTTGTT+GGG | 0.382400 | 2_2:-36988143 | None:intergenic |
| GGAGGAGGAGAGGGAGGGGA+AGG | 0.386644 | 2_2:-36988242 | None:intergenic |
| ATGGTGGGGTTTGGTGGTTG+TGG | 0.391884 | 2_2:-36988271 | None:intergenic |
| ATACACAGGGAAAGAAGTTA+AGG | 0.394975 | 2_2:-36990911 | None:intergenic |
| GTGTCGCCGAGGGTGCGATT+TGG | 0.395147 | 2_2:-36988343 | None:intergenic |
| AGCGAAAGCGAAACAACGCC+GGG | 0.400381 | 2_2:-36988652 | None:intergenic |
| CGATTTGGGAGGTAGTAGTT+GGG | 0.404065 | 2_2:-36988328 | None:intergenic |
| GGAGGGGAAGGTGAGTGTGG+TGG | 0.404648 | 2_2:-36988230 | None:intergenic |
| TCAAGTTTGACCCTGAATAT+AGG | 0.409466 | 2_2:+36988701 | Msa0249660:CDS |
| GAGTGAGCGGCGGGTGATGG+TGG | 0.412527 | 2_2:-36988191 | None:intergenic |
| TGGTGAAGCGGAGGAGGAGA+GGG | 0.413678 | 2_2:-36988251 | None:intergenic |
| AGAATTGGGTGGTGGAGAGA+GGG | 0.420473 | 2_2:-36988163 | None:intergenic |
| GAGGAGTGAGCGGCGGGTGA+TGG | 0.428601 | 2_2:-36988194 | None:intergenic |
| GGAGGTAGTAGTTGGGGCAG+AGG | 0.433510 | 2_2:-36988321 | None:intergenic |
| GAAGCGGAGGAGGAGAGGGA+GGG | 0.436968 | 2_2:-36988247 | None:intergenic |
| ATGCGTCAGCGCAAACGCCT+TGG | 0.437105 | 2_2:-36988623 | None:intergenic |
| GAGAATGACGCGACCGAGTA+AGG | 0.440060 | 2_2:-36988392 | None:intergenic |
| GGGTGGTGGAGAGAGGGGAG+TGG | 0.441687 | 2_2:-36988157 | None:intergenic |
| GTCTTTGGAACTGTGCTTGA+AGG | 0.448317 | 2_2:+36988787 | Msa0249660:CDS |
| TGGTGGTTGTTGGGTTATGG+AGG | 0.453657 | 2_2:-36988134 | None:intergenic |
| TTACTCGGTCGCGTCATTCT+CGG | 0.454046 | 2_2:+36988394 | Msa0249660:CDS |
| GTGGTGAAGCGGAGGAGGAG+AGG | 0.454371 | 2_2:-36988252 | None:intergenic |
| GAAGATGCGGTCGGTGATGG+TGG | 0.457951 | 2_2:-36988287 | None:intergenic |
| GTGGACGAATGTGTTCTTGT+AGG | 0.459351 | 2_2:-36988494 | None:intergenic |
| ATGCTCGTGCCATTTGGAAC+AGG | 0.468815 | 2_2:+36990816 | Msa0249660:CDS |
| TCGGTGATGGTGGGGTTTGG+TGG | 0.473692 | 2_2:-36988277 | None:intergenic |
| AATTCGCCAATTTAATGACT+TGG | 0.479431 | 2_2:+36990763 | Msa0249660:CDS |
| CACTCCTCTCCTCTCCTCAA+TGG | 0.479892 | 2_2:+36988108 | Msa0249660:exon |
| TACTTTCTTGCTGGACGTCA+GGG | 0.483519 | 2_2:+36988535 | Msa0249660:CDS |
| GTTTGGTGGTTGTGGTGAAG+CGG | 0.489298 | 2_2:-36988263 | None:intergenic |
| CTAATATAAATTGTGGTAAG+AGG | 0.490632 | 2_2:-36990839 | None:intergenic |
| TCGTTCACCTGGTTGGTAAG+TGG | 0.493192 | 2_2:-36990741 | None:intergenic |
| TGCTCCGACTCCACCTTACT+CGG | 0.496326 | 2_2:+36988379 | Msa0249660:CDS |
| TGGTTGTGGTGAAGCGGAGG+AGG | 0.499350 | 2_2:-36988257 | None:intergenic |
| GCGCTGACGCATTCTCGCCC+CGG | 0.501319 | 2_2:+36988634 | Msa0249660:CDS |
| TGTGAGGAGGAGTGAGCGGC+GGG | 0.504045 | 2_2:-36988200 | None:intergenic |
| CGTTCACCTGGTTGGTAAGT+GGG | 0.504144 | 2_2:-36990740 | None:intergenic |
| ACTCAACATTCCTATATTCA+GGG | 0.504806 | 2_2:-36988711 | None:intergenic |
| AGTGAGCGGCGGGTGATGGT+GGG | 0.505406 | 2_2:-36988190 | None:intergenic |
| TAAGGTGGAGTCGGAGCATA+GGG | 0.507747 | 2_2:-36988374 | None:intergenic |
| GAATTGGGTGGTGGAGAGAG+GGG | 0.508964 | 2_2:-36988162 | None:intergenic |
| TGGTGGTTGTGGTGAAGCGG+AGG | 0.509114 | 2_2:-36988260 | None:intergenic |
| CGCGTCATTCTCGGCCTCTA+CGG | 0.512383 | 2_2:+36988403 | Msa0249660:CDS |
| GGGAGAGAAGGTGTGAGGGA+AGG | 0.513470 | 2_2:-36990890 | None:intergenic |
| TTAAGGGAGAGAAGGTGTGA+GGG | 0.513923 | 2_2:-36990894 | None:intergenic |
| TACACAGGGAAAGAAGTTAA+GGG | 0.514390 | 2_2:-36990910 | None:intergenic |
| ATTAGGAGAGGAAATGCAAA+GGG | 0.515231 | 2_2:-36988461 | None:intergenic |
| CAGTTTCAATGTTGCGTGGG+AGG | 0.518886 | 2_2:-36988594 | None:intergenic |
| TCATACTCAAATTATTTCAA+AGG | 0.520341 | 2_2:+36990975 | Msa0249660:three_prime_UTR |
| GGCGAATTCGTTCACCTGGT+TGG | 0.521823 | 2_2:-36990748 | None:intergenic |
| AAGATGCGGTCGGTGATGGT+GGG | 0.523738 | 2_2:-36988286 | None:intergenic |
| GAGCGAAAGCGAAACAACGC+CGG | 0.525178 | 2_2:-36988653 | None:intergenic |
| GTGTGGTGGTGGTGGATGTG+AGG | 0.530684 | 2_2:-36988216 | None:intergenic |
| CAATTTATATTAGTGACTGT+GGG | 0.530711 | 2_2:+36990849 | Msa0249660:CDS |
| CATGACGCAGAGGTTGAACT+AGG | 0.535112 | 2_2:-36988073 | None:intergenic |
| TGGGTTTGAGAATTGGGTGG+TGG | 0.538502 | 2_2:-36988171 | None:intergenic |
| GGTGGAGATGGTGTCGCCGA+GGG | 0.538908 | 2_2:-36988353 | None:intergenic |
| AATTGGCGAATTCGTTCACC+TGG | 0.540152 | 2_2:-36990752 | None:intergenic |
| GAAAGAAGTTAAGGGAGAGA+AGG | 0.540359 | 2_2:-36990902 | None:intergenic |
| TGGTGGTGGTGGATGTGAGG+AGG | 0.541066 | 2_2:-36988213 | None:intergenic |
| GGTAAGAGGCCTGTTCCAAA+TGG | 0.543564 | 2_2:-36990825 | None:intergenic |
| GGTTATGGAGGAAGCCATTG+AGG | 0.545340 | 2_2:-36988122 | None:intergenic |
| GTTAAGGGAGAGAAGGTGTG+AGG | 0.547655 | 2_2:-36990895 | None:intergenic |
| CATGAAGATGCGGTCGGTGA+TGG | 0.549118 | 2_2:-36988290 | None:intergenic |
| GTAAGGTGGAGTCGGAGCAT+AGG | 0.556140 | 2_2:-36988375 | None:intergenic |
| GTCGGAGCATAGGGTGGAGA+TGG | 0.558026 | 2_2:-36988365 | None:intergenic |
| CAACAGTTTCAATGTTGCGT+GGG | 0.562836 | 2_2:-36988597 | None:intergenic |
| TCAAGCTGAGGACAAGGTCC+AGG | 0.566275 | 2_2:-36988751 | None:intergenic |
| TCTTGAATAATAATATACAC+AGG | 0.566512 | 2_2:-36990925 | None:intergenic |
| ATGTGAGGAGGAGTGAGCGG+CGG | 0.568201 | 2_2:-36988201 | None:intergenic |
| ACAATTTATATTAGTGACTG+TGG | 0.569563 | 2_2:+36990848 | Msa0249660:CDS |
| TTATTATCAAGCTGAGGACA+AGG | 0.574405 | 2_2:-36988757 | None:intergenic |
| TCAACAGTTTCAATGTTGCG+TGG | 0.575918 | 2_2:-36988598 | None:intergenic |
| CAAGAACACATTCGTCCACA+AGG | 0.583521 | 2_2:+36988498 | Msa0249660:CDS |
| GGAGGAAGATGAATTAGGAG+AGG | 0.585467 | 2_2:-36988473 | None:intergenic |
| TGGTGGGTTTGAGAATTGGG+TGG | 0.585572 | 2_2:-36988174 | None:intergenic |
| AGATGCGGTCGGTGATGGTG+GGG | 0.588545 | 2_2:-36988285 | None:intergenic |
| TACCTCCCAAATCGCACCCT+CGG | 0.589690 | 2_2:+36988337 | Msa0249660:CDS |
| AATTAGGAGAGGAAATGCAA+AGG | 0.593113 | 2_2:-36988462 | None:intergenic |
| GGGTGGAGATGGTGTCGCCG+AGG | 0.596176 | 2_2:-36988354 | None:intergenic |
| CATTGAAACTGTTGACCCCA+AGG | 0.600750 | 2_2:+36988606 | Msa0249660:CDS |
| CCAGCAAGAAAGTACTGACC+TGG | 0.603788 | 2_2:-36988526 | None:intergenic |
| TAGTGACTGTGGGGTGCTAG+AGG | 0.614129 | 2_2:+36990859 | Msa0249660:CDS |
| GTAAGTGGGAGTTGACGCTA+TGG | 0.616115 | 2_2:-36990726 | None:intergenic |
| GGTGGAGTCGGAGCATAGGG+TGG | 0.618838 | 2_2:-36988371 | None:intergenic |
| TGGATGTGAGGAGGAGTGAG+CGG | 0.619737 | 2_2:-36988204 | None:intergenic |
| GATTTGGGAGGTAGTAGTTG+GGG | 0.621894 | 2_2:-36988327 | None:intergenic |
| TCAACTCCCACTTACCAACC+AGG | 0.622301 | 2_2:+36990734 | Msa0249660:CDS |
| TGGAGGAAGCCATTGAGGAG+AGG | 0.623653 | 2_2:-36988117 | None:intergenic |
| GCGTCAGCGCAAACGCCTTG+GGG | 0.623911 | 2_2:-36988621 | None:intergenic |
| CGCAGAGGTTGAACTAGGAG+AGG | 0.623912 | 2_2:-36988068 | None:intergenic |
| AGGACAAGGTCCAGGTCCAG+TGG | 0.624784 | 2_2:-36988743 | None:intergenic |
| CGCCGAGGGTGCGATTTGGG+AGG | 0.626234 | 2_2:-36988339 | None:intergenic |
| ATGTTGCGTGGGAGGTGACG+AGG | 0.627365 | 2_2:-36988586 | None:intergenic |
| GGCTGAAGTCCATGAAGATG+CGG | 0.627462 | 2_2:-36988300 | None:intergenic |
| CTTGAATAATAATATACACA+GGG | 0.631939 | 2_2:-36990924 | None:intergenic |
| TTGAAATTTGAGACTGTGCG+TGG | 0.632219 | 2_2:-36988436 | None:intergenic |
| TTGCGTGGGAGGTGACGAGG+AGG | 0.634472 | 2_2:-36988583 | None:intergenic |
| TTGAGACTGTGCGTGGAACG+AGG | 0.635278 | 2_2:-36988429 | None:intergenic |
| GCGACCGAGTAAGGTGGAGT+CGG | 0.639635 | 2_2:-36988383 | None:intergenic |
| ACTGACCTGGTAAAACCTTG+TGG | 0.646621 | 2_2:-36988513 | None:intergenic |
| TGCGTGGGAGGTGACGAGGA+GGG | 0.647096 | 2_2:-36988582 | None:intergenic |
| ATGTTCTTATTATCAAGCTG+AGG | 0.649807 | 2_2:-36988763 | None:intergenic |
| ACAGTCACTAATATAAATTG+TGG | 0.650557 | 2_2:-36990846 | None:intergenic |
| GTGGGAGGTGACGAGGAGGG+CGG | 0.652018 | 2_2:-36988579 | None:intergenic |
| TTAGGTTGTTCATGACGCAG+AGG | 0.653670 | 2_2:-36988083 | None:intergenic |
| AATGACGCGACCGAGTAAGG+TGG | 0.658935 | 2_2:-36988389 | None:intergenic |
| GACGAATGTGTTCTTGTAGG+AGG | 0.659670 | 2_2:-36988491 | None:intergenic |
| GAAGCCATTGAGGAGAGGAG+AGG | 0.659749 | 2_2:-36988112 | None:intergenic |
| GAAGTCCATGAAGATGCGGT+CGG | 0.663657 | 2_2:-36988296 | None:intergenic |
| GTGGAACGAGGTTACCGTAG+AGG | 0.665501 | 2_2:-36988417 | None:intergenic |
| AATTTATATTAGTGACTGTG+GGG | 0.667281 | 2_2:+36990850 | Msa0249660:CDS |
| GCGAAAGCGAAACAACGCCG+GGG | 0.709457 | 2_2:-36988651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCCATATAATAAATTTAA+TGG | - | chr2_2:36989839-36989858 | None:intergenic | 10.0% |
| !! | TATAGTTAAACACTTAAATA+TGG | + | chr2_2:36989405-36989424 | Msa0249660:intron | 15.0% |
| !! | TGACCATTAAATTTATTATA+TGG | + | chr2_2:36989833-36989852 | Msa0249660:intron | 15.0% |
| !!! | TTTTGCTTAGTGTTTTTTTA+TGG | + | chr2_2:36988862-36988881 | Msa0249660:intron | 20.0% |
| !!! | TGGTAACATTTTAAAGAAAT+TGG | + | chr2_2:36989025-36989044 | Msa0249660:intron | 20.0% |
| !!! | GGTAACATTTTAAAGAAATT+GGG | + | chr2_2:36989026-36989045 | Msa0249660:intron | 20.0% |
| !! | ATTGTATATAACAGACATTA+CGG | + | chr2_2:36989153-36989172 | Msa0249660:intron | 20.0% |
| !!! | ACAAACCAATTTTTTACTAT+GGG | - | chr2_2:36989814-36989833 | None:intergenic | 20.0% |
| !!! | AAATGCTTCCTTTTATATAT+AGG | + | chr2_2:36989922-36989941 | Msa0249660:intron | 20.0% |
| !!! | AATGCTTCCTTTTATATATA+GGG | + | chr2_2:36989923-36989942 | Msa0249660:intron | 20.0% |
| !! | AGAAAAACCCTATATATAAA+AGG | - | chr2_2:36989933-36989952 | None:intergenic | 20.0% |
| !!! | AGTGCAATATTTTAAACTAT+AGG | + | chr2_2:36990040-36990059 | Msa0249660:intron | 20.0% |
| !!! | GTGCAATATTTTAAACTATA+GGG | + | chr2_2:36990041-36990060 | Msa0249660:intron | 20.0% |
| !!! | CATCTTCTATTTTTGAAAAA+TGG | + | chr2_2:36990105-36990124 | Msa0249660:intron | 20.0% |
| !! | AAAGTCAAAACTATTTAACA+TGG | - | chr2_2:36990526-36990545 | None:intergenic | 20.0% |
| !!! | TGAAATATTTGATCTCTTTT+TGG | + | chr2_2:36990600-36990619 | Msa0249660:intron | 20.0% |
| !!! | GAAATATTTGATCTCTTTTT+GGG | + | chr2_2:36990601-36990620 | Msa0249660:intron | 20.0% |
| !! | CTTGAATAATAATATACACA+GGG | - | chr2_2:36990927-36990946 | None:intergenic | 20.0% |
| !! | TCTTGAATAATAATATACAC+AGG | - | chr2_2:36990928-36990947 | None:intergenic | 20.0% |
| !! | TCATACTCAAATTATTTCAA+AGG | + | chr2_2:36990975-36990994 | Msa0249660:three_prime_UTR | 20.0% |
| ! | GATAATAAGAACATTGTCTT+TGG | + | chr2_2:36988772-36988791 | Msa0249660:CDS | 25.0% |
| ! | GTGTTTAACTATATTCTCAA+CGG | - | chr2_2:36989398-36989417 | None:intergenic | 25.0% |
| !!! | TTTGTAAAAGTACTGCAAAT+CGG | - | chr2_2:36989706-36989725 | None:intergenic | 25.0% |
| !! | TTTGCAGTACTTTTACAAAT+TGG | + | chr2_2:36989707-36989726 | Msa0249660:intron | 25.0% |
| ! | AAACACCCATAGTAAAAAAT+TGG | + | chr2_2:36989806-36989825 | Msa0249660:intron | 25.0% |
| !!! | CACAAACCAATTTTTTACTA+TGG | - | chr2_2:36989815-36989834 | None:intergenic | 25.0% |
| ! | TGTTAGGAAGTTTAACATAA+TGG | + | chr2_2:36989973-36989992 | Msa0249660:intron | 25.0% |
| !! | ATTGTTTAAAGTTCTTGATG+TGG | + | chr2_2:36990002-36990021 | Msa0249660:intron | 25.0% |
| !! | TTGTTTAAAGTTCTTGATGT+GGG | + | chr2_2:36990003-36990022 | Msa0249660:intron | 25.0% |
| ! | ATCTTATTATTGTTAGTTGC+TGG | + | chr2_2:36990137-36990156 | Msa0249660:intron | 25.0% |
| ! | ATAATCTTTGTAACTAAACC+TGG | + | chr2_2:36990427-36990446 | Msa0249660:intron | 25.0% |
| ! | ATACACAAAATCGTTGAATA+GGG | - | chr2_2:36990553-36990572 | None:intergenic | 25.0% |
| ! | CTAATATAAATTGTGGTAAG+AGG | - | chr2_2:36990842-36990861 | None:intergenic | 25.0% |
| ! | ACAGTCACTAATATAAATTG+TGG | - | chr2_2:36990849-36990868 | None:intergenic | 25.0% |
| ! | ACAATTTATATTAGTGACTG+TGG | + | chr2_2:36990848-36990867 | Msa0249660:CDS | 25.0% |
| ! | CAATTTATATTAGTGACTGT+GGG | + | chr2_2:36990849-36990868 | Msa0249660:CDS | 25.0% |
| ! | AATTTATATTAGTGACTGTG+GGG | + | chr2_2:36990850-36990869 | Msa0249660:CDS | 25.0% |
| ACTCAACATTCCTATATTCA+GGG | - | chr2_2:36988714-36988733 | None:intergenic | 30.0% | |
| AACTCAACATTCCTATATTC+AGG | - | chr2_2:36988715-36988734 | None:intergenic | 30.0% | |
| ATGTTCTTATTATCAAGCTG+AGG | - | chr2_2:36988766-36988785 | None:intergenic | 30.0% | |
| AAAACACTAAGCAAAATGAG+TGG | - | chr2_2:36988858-36988877 | None:intergenic | 30.0% | |
| !! | CAACATTTCTAAGATTCGTT+CGG | - | chr2_2:36989007-36989026 | None:intergenic | 30.0% |
| !! | GTTTATAAACCGATTTTGCA+GGG | - | chr2_2:36989067-36989086 | None:intergenic | 30.0% |
| !! | TGTTTATAAACCGATTTTGC+AGG | - | chr2_2:36989068-36989087 | None:intergenic | 30.0% |
| AGCTTAGGATTCATGAATAT+AGG | + | chr2_2:36989124-36989143 | Msa0249660:intron | 30.0% | |
| AGTTGTAAAAAATTCTGCCA+TGG | + | chr2_2:36989347-36989366 | Msa0249660:intron | 30.0% | |
| TTATTACATGGCAATGGTAA+TGG | - | chr2_2:36989373-36989392 | None:intergenic | 30.0% | |
| TTCCAGTTTAAACATCGAAA+AGG | - | chr2_2:36989528-36989547 | None:intergenic | 30.0% | |
| !! | CAGGAAGTAAACAGTTTTAT+TGG | - | chr2_2:36989772-36989791 | None:intergenic | 30.0% |
| ! | ATGCTACTCTTGAAGTATTT+GGG | - | chr2_2:36990278-36990297 | None:intergenic | 30.0% |
| ! | TATGCTACTCTTGAAGTATT+TGG | - | chr2_2:36990279-36990298 | None:intergenic | 30.0% |
| TCTCAATTCTCTTTACTACA+TGG | - | chr2_2:36990321-36990340 | None:intergenic | 30.0% | |
| AGTAAAGAGAATTGAGAACT+AGG | + | chr2_2:36990324-36990343 | Msa0249660:intron | 30.0% | |
| ! | TGGTTTGTCACAATATCATA+AGG | + | chr2_2:36990356-36990375 | Msa0249660:intron | 30.0% |
| AAACATGACCTCTTACTAAT+GGG | - | chr2_2:36990496-36990515 | None:intergenic | 30.0% | |
| AAAACATGACCTCTTACTAA+TGG | - | chr2_2:36990497-36990516 | None:intergenic | 30.0% | |
| GTCAAAACTATTTAACATGG+AGG | - | chr2_2:36990523-36990542 | None:intergenic | 30.0% | |
| GATACACAAAATCGTTGAAT+AGG | - | chr2_2:36990554-36990573 | None:intergenic | 30.0% | |
| !! | TCTTTTTGGGCTAGATTTTA+TGG | + | chr2_2:36990614-36990633 | Msa0249660:intron | 30.0% |
| ! | TTCTAGTTGAATCTAATTGC+AGG | + | chr2_2:36990686-36990705 | Msa0249660:intron | 30.0% |
| TCTAGTTGAATCTAATTGCA+GGG | + | chr2_2:36990687-36990706 | Msa0249660:intron | 30.0% | |
| AATTCGCCAATTTAATGACT+TGG | + | chr2_2:36990763-36990782 | Msa0249660:CDS | 30.0% | |
| ATTCAGCCAAGTCATTAAAT+TGG | - | chr2_2:36990772-36990791 | None:intergenic | 30.0% | |
| !! | AATGACTTGGCTGAATTTTT+CGG | + | chr2_2:36990776-36990795 | Msa0249660:CDS | 30.0% |
| ATTAGGAGAGGAAATGCAAA+GGG | - | chr2_2:36988464-36988483 | None:intergenic | 35.0% | |
| AATTAGGAGAGGAAATGCAA+AGG | - | chr2_2:36988465-36988484 | None:intergenic | 35.0% | |
| TTGTAGGAGGAAGATGAATT+AGG | - | chr2_2:36988481-36988500 | None:intergenic | 35.0% | |
| TCAAGTTTGACCCTGAATAT+AGG | + | chr2_2:36988701-36988720 | Msa0249660:CDS | 35.0% | |
| ! | GTTGAGTTTTTAATCACCAC+TGG | + | chr2_2:36988727-36988746 | Msa0249660:CDS | 35.0% |
| TTATTATCAAGCTGAGGACA+AGG | - | chr2_2:36988760-36988779 | None:intergenic | 35.0% | |
| CGAACGAATCTTAGAAATGT+TGG | + | chr2_2:36989005-36989024 | Msa0249660:intron | 35.0% | |
| TCTCAATCATACCAAAGGAA+AGG | - | chr2_2:36989251-36989270 | None:intergenic | 35.0% | |
| CTGATTCTCAATCATACCAA+AGG | - | chr2_2:36989256-36989275 | None:intergenic | 35.0% | |
| ATGATTGAGAATCAGTGTTG+TGG | + | chr2_2:36989261-36989280 | Msa0249660:intron | 35.0% | |
| !! | TTCTCAACGGTGTTATTACA+TGG | - | chr2_2:36989385-36989404 | None:intergenic | 35.0% |
| ! | GGTTGATGTACTCTAAATTG+TGG | + | chr2_2:36989426-36989445 | Msa0249660:intron | 35.0% |
| ! | CACCTTTTCGATGTTTAAAC+TGG | + | chr2_2:36989523-36989542 | Msa0249660:intron | 35.0% |
| TCGATGTTTAAACTGGAAAC+TGG | + | chr2_2:36989530-36989549 | Msa0249660:intron | 35.0% | |
| AGATACCTTTGTAGGAGATA+AGG | + | chr2_2:36989553-36989572 | Msa0249660:intron | 35.0% | |
| ATTCTCCTTATCTCCTACAA+AGG | - | chr2_2:36989561-36989580 | None:intergenic | 35.0% | |
| ! | TTTTACTATGGGTGTTTCCA+TGG | - | chr2_2:36989803-36989822 | None:intergenic | 35.0% |
| TGTGCAAATTTGCACATGTT+AGG | + | chr2_2:36989957-36989976 | Msa0249660:intron | 35.0% | |
| ! | TGCTACTCTTGAAGTATTTG+GGG | - | chr2_2:36990277-36990296 | None:intergenic | 35.0% |
| TTTACTACATGGTACGAGTT+CGG | - | chr2_2:36990310-36990329 | None:intergenic | 35.0% | |
| TGAGAACTAGGTTACAATGA+TGG | + | chr2_2:36990336-36990355 | Msa0249660:intron | 35.0% | |
| CTGAAAACAACTCTAACATG+TGG | - | chr2_2:36990576-36990595 | None:intergenic | 35.0% | |
| TAGAAGCTGAGCAATGTAAT+TGG | - | chr2_2:36990671-36990690 | None:intergenic | 35.0% | |
| !! | TGAATTTTTCGGAGACGAAA+GGG | + | chr2_2:36990787-36990806 | Msa0249660:CDS | 35.0% |
| TACACAGGGAAAGAAGTTAA+GGG | - | chr2_2:36990913-36990932 | None:intergenic | 35.0% | |
| ATACACAGGGAAAGAAGTTA+AGG | - | chr2_2:36990914-36990933 | None:intergenic | 35.0% | |
| !! | TGATGGTGGGTTTGAGAATT+GGG | - | chr2_2:36988180-36988199 | None:intergenic | 40.0% |
| ! | TTGAAATTTGAGACTGTGCG+TGG | - | chr2_2:36988439-36988458 | None:intergenic | 40.0% |
| CAACAGTTTCAATGTTGCGT+GGG | - | chr2_2:36988600-36988619 | None:intergenic | 40.0% | |
| TCAACAGTTTCAATGTTGCG+TGG | - | chr2_2:36988601-36988620 | None:intergenic | 40.0% | |
| ! | TTTTTAATCACCACTGGACC+TGG | + | chr2_2:36988733-36988752 | Msa0249660:CDS | 40.0% |
| ! | TGTTGCCGATTGTTTGATAG+CGG | + | chr2_2:36988977-36988996 | Msa0249660:intron | 40.0% |
| CAAACTCAACCCTGCAAAAT+CGG | + | chr2_2:36989055-36989074 | Msa0249660:intron | 40.0% | |
| TCGTGCATAAAACTGTTGTC+TGG | - | chr2_2:36989095-36989114 | None:intergenic | 40.0% | |
| ! | GCACGATTAACTTGAAGCTT+AGG | + | chr2_2:36989109-36989128 | Msa0249660:intron | 40.0% |
| ATTGAGAATCAGTGTTGTGG+AGG | + | chr2_2:36989264-36989283 | Msa0249660:intron | 40.0% | |
| AAACTCCGCCATATAAACCA+TGG | + | chr2_2:36989290-36989309 | Msa0249660:intron | 40.0% | |
| ATATAAACCATGGCAGGCAA+GGG | + | chr2_2:36989300-36989319 | Msa0249660:intron | 40.0% | |
| GCAAGGGATCCTTTACAAAT+TGG | + | chr2_2:36989316-36989335 | Msa0249660:intron | 40.0% | |
| TGCACTGAGCCAATTTGTAA+AGG | - | chr2_2:36989328-36989347 | None:intergenic | 40.0% | |
| !! | ACGGTGTTATTACATGGCAA+TGG | - | chr2_2:36989379-36989398 | None:intergenic | 40.0% |
| AGCATTGCTGTCAAAAACCT+TGG | + | chr2_2:36989450-36989469 | Msa0249660:intron | 40.0% | |
| GAAACTGGAGATACCTTTGT+AGG | + | chr2_2:36989545-36989564 | Msa0249660:intron | 40.0% | |
| AAAAGAGTGACACTGAGTGT+TGG | + | chr2_2:36989585-36989604 | Msa0249660:intron | 40.0% | |
| GCATCTACTCTCAAAATGAG+TGG | + | chr2_2:36989633-36989652 | Msa0249660:intron | 40.0% | |
| ! | CAACTGGTTTACAGTTCTCA+AGG | - | chr2_2:36989679-36989698 | None:intergenic | 40.0% |
| CCAGTGATTTCCTACGAATT+GGG | - | chr2_2:36989749-36989768 | None:intergenic | 40.0% | |
| TACTTCCTGTTTAGTGACCA+TGG | + | chr2_2:36989783-36989802 | Msa0249660:intron | 40.0% | |
| TGTTTCCATGGTCACTAAAC+AGG | - | chr2_2:36989791-36989810 | None:intergenic | 40.0% | |
| GCGCACTATGTCATAATAGA+AGG | - | chr2_2:36989868-36989887 | None:intergenic | 40.0% | |
| AGTGCGCTAATTTGATTCTG+CGG | + | chr2_2:36989881-36989900 | Msa0249660:intron | 40.0% | |
| GTGCTCTCAACTTTCAATGT+CGG | + | chr2_2:36990074-36990093 | Msa0249660:intron | 40.0% | |
| ! | TACTCTTGAAGTATTTGGGG+GGG | - | chr2_2:36990274-36990293 | None:intergenic | 40.0% |
| ! | CTACTCTTGAAGTATTTGGG+GGG | - | chr2_2:36990275-36990294 | None:intergenic | 40.0% |
| ! | GCTACTCTTGAAGTATTTGG+GGG | - | chr2_2:36990276-36990295 | None:intergenic | 40.0% |
| TTACTACATGGTACGAGTTC+GGG | - | chr2_2:36990309-36990328 | None:intergenic | 40.0% | |
| ! | AAAAGCACAAACGTTTCACC+AGG | - | chr2_2:36990448-36990467 | None:intergenic | 40.0% |
| TGTACTCTCCCATTAGTAAG+AGG | + | chr2_2:36990485-36990504 | Msa0249660:intron | 40.0% | |
| GTTGAATCTAATTGCAGGGT+TGG | + | chr2_2:36990691-36990710 | Msa0249660:intron | 40.0% | |
| !! | CTGAATTTTTCGGAGACGAA+AGG | + | chr2_2:36990786-36990805 | Msa0249660:CDS | 40.0% |
| GAAAGAAGTTAAGGGAGAGA+AGG | - | chr2_2:36990905-36990924 | None:intergenic | 40.0% | |
| ! | TTAGGTTGTTCATGACGCAG+AGG | - | chr2_2:36988086-36988105 | None:intergenic | 45.0% |
| !! | GTGATGGTGGGTTTGAGAAT+TGG | - | chr2_2:36988181-36988200 | None:intergenic | 45.0% |
| GATTTGGGAGGTAGTAGTTG+GGG | - | chr2_2:36988330-36988349 | None:intergenic | 45.0% | |
| ! | CGATTTGGGAGGTAGTAGTT+GGG | - | chr2_2:36988331-36988350 | None:intergenic | 45.0% |
| GGAGGAAGATGAATTAGGAG+AGG | - | chr2_2:36988476-36988495 | None:intergenic | 45.0% | |
| GACGAATGTGTTCTTGTAGG+AGG | - | chr2_2:36988494-36988513 | None:intergenic | 45.0% | |
| GTGGACGAATGTGTTCTTGT+AGG | - | chr2_2:36988497-36988516 | None:intergenic | 45.0% | |
| CAAGAACACATTCGTCCACA+AGG | + | chr2_2:36988498-36988517 | Msa0249660:CDS | 45.0% | |
| ! | TTCGTCCACAAGGTTTTACC+AGG | + | chr2_2:36988508-36988527 | Msa0249660:CDS | 45.0% |
| ACTGACCTGGTAAAACCTTG+TGG | - | chr2_2:36988516-36988535 | None:intergenic | 45.0% | |
| TACTTTCTTGCTGGACGTCA+GGG | + | chr2_2:36988535-36988554 | Msa0249660:CDS | 45.0% | |
| CATTGAAACTGTTGACCCCA+AGG | + | chr2_2:36988606-36988625 | Msa0249660:CDS | 45.0% | |
| !! | GTCTTTGGAACTGTGCTTGA+AGG | + | chr2_2:36988787-36988806 | Msa0249660:CDS | 45.0% |
| GTCAGCCGCTATCAAACAAT+CGG | - | chr2_2:36988985-36989004 | None:intergenic | 45.0% | |
| ACGGTCAAAAGCAGCAAATC+AGG | + | chr2_2:36989172-36989191 | Msa0249660:intron | 45.0% | |
| CGGTCAAAAGCAGCAAATCA+GGG | + | chr2_2:36989173-36989192 | Msa0249660:intron | 45.0% | |
| CTTGCCTGCCATGGTTTATA+TGG | - | chr2_2:36989301-36989320 | None:intergenic | 45.0% | |
| CATATAAACCATGGCAGGCA+AGG | + | chr2_2:36989299-36989318 | Msa0249660:intron | 45.0% | |
| AATTTGGATCGGGACATCCA+AGG | - | chr2_2:36989470-36989489 | None:intergenic | 45.0% | |
| AGCCAACCACAATTTGGATC+GGG | - | chr2_2:36989480-36989499 | None:intergenic | 45.0% | |
| CAGCCAACCACAATTTGGAT+CGG | - | chr2_2:36989481-36989500 | None:intergenic | 45.0% | |
| AAAGGCAGCCAACCACAATT+TGG | - | chr2_2:36989486-36989505 | None:intergenic | 45.0% | |
| GCAGAACCAGGTTCGAAAAA+AGG | - | chr2_2:36989504-36989523 | None:intergenic | 45.0% | |
| AGTGGTGACATAATTCGCCA+GGG | + | chr2_2:36989651-36989670 | Msa0249660:intron | 45.0% | |
| ACTGCAAATCGGTACACAAC+TGG | - | chr2_2:36989695-36989714 | None:intergenic | 45.0% | |
| CAAACTTGTGCCCAATTCGT+AGG | + | chr2_2:36989736-36989755 | Msa0249660:intron | 45.0% | |
| CCCAATTCGTAGGAAATCAC+TGG | + | chr2_2:36989746-36989765 | Msa0249660:intron | 45.0% | |
| GCCAGTGATTTCCTACGAAT+TGG | - | chr2_2:36989750-36989769 | None:intergenic | 45.0% | |
| !! | GGTATACATAGTTGGTTCGC+TGG | - | chr2_2:36990244-36990263 | None:intergenic | 45.0% |
| ! | ACTCTTGAAGTATTTGGGGG+GGG | - | chr2_2:36990273-36990292 | None:intergenic | 45.0% |
| AATTGGCGAATTCGTTCACC+TGG | - | chr2_2:36990755-36990774 | None:intergenic | 45.0% | |
| ! | TTAAGGGAGAGAAGGTGTGA+GGG | - | chr2_2:36990897-36990916 | None:intergenic | 45.0% |
| CATGACGCAGAGGTTGAACT+AGG | - | chr2_2:36988076-36988095 | None:intergenic | 50.0% | |
| GGTTATGGAGGAAGCCATTG+AGG | - | chr2_2:36988125-36988144 | None:intergenic | 50.0% | |
| TGGTGGTTGTTGGGTTATGG+AGG | - | chr2_2:36988137-36988156 | None:intergenic | 50.0% | |
| !! | TGGTGGTGGTTGTTGGGTTA+TGG | - | chr2_2:36988140-36988159 | None:intergenic | 50.0% |
| !! | AGAATTGGGTGGTGGAGAGA+GGG | - | chr2_2:36988166-36988185 | None:intergenic | 50.0% |
| TGGGTTTGAGAATTGGGTGG+TGG | - | chr2_2:36988174-36988193 | None:intergenic | 50.0% | |
| !! | TGGTGGGTTTGAGAATTGGG+TGG | - | chr2_2:36988177-36988196 | None:intergenic | 50.0% |
| ! | GTTTGGTGGTTGTGGTGAAG+CGG | - | chr2_2:36988266-36988285 | None:intergenic | 50.0% |
| GAAGTCCATGAAGATGCGGT+CGG | - | chr2_2:36988299-36988318 | None:intergenic | 50.0% | |
| GGCTGAAGTCCATGAAGATG+CGG | - | chr2_2:36988303-36988322 | None:intergenic | 50.0% | |
| ! | GCGATTTGGGAGGTAGTAGT+TGG | - | chr2_2:36988332-36988351 | None:intergenic | 50.0% |
| TAAGGTGGAGTCGGAGCATA+GGG | - | chr2_2:36988377-36988396 | None:intergenic | 50.0% | |
| TTACTCGGTCGCGTCATTCT+CGG | + | chr2_2:36988394-36988413 | Msa0249660:CDS | 50.0% | |
| !! | CCAGCAAGAAAGTACTGACC+TGG | - | chr2_2:36988529-36988548 | None:intergenic | 50.0% |
| CCAGGTCAGTACTTTCTTGC+TGG | + | chr2_2:36988526-36988545 | Msa0249660:CDS | 50.0% | |
| GTACTTTCTTGCTGGACGTC+AGG | + | chr2_2:36988534-36988553 | Msa0249660:CDS | 50.0% | |
| CAGTTTCAATGTTGCGTGGG+AGG | - | chr2_2:36988597-36988616 | None:intergenic | 50.0% | |
| TTAGCATAGCCCTCATACCC+AGG | + | chr2_2:36988939-36988958 | Msa0249660:intron | 50.0% | |
| TGCGTTGCGATCCTTTCCTT+TGG | + | chr2_2:36989237-36989256 | Msa0249660:intron | 50.0% | |
| TCCGCCATATAAACCATGGC+AGG | + | chr2_2:36989294-36989313 | Msa0249660:intron | 50.0% | |
| GCCTGCCATGGTTTATATGG+CGG | - | chr2_2:36989298-36989317 | None:intergenic | 50.0% | |
| !! | CATGGCAATGGTAATGGCCA+TGG | - | chr2_2:36989367-36989386 | None:intergenic | 50.0% |
| GGATGTCCCGATCCAAATTG+TGG | + | chr2_2:36989471-36989490 | Msa0249660:intron | 50.0% | |
| GTCCCGATCCAAATTGTGGT+TGG | + | chr2_2:36989475-36989494 | Msa0249660:intron | 50.0% | |
| !!! | TGGCTGCCTTTTTTCGAACC+TGG | + | chr2_2:36989495-36989514 | Msa0249660:intron | 50.0% |
| ! | CATCGAAAAGGTGCAGAACC+AGG | - | chr2_2:36989516-36989535 | None:intergenic | 50.0% |
| GAGTGGTGACATAATTCGCC+AGG | + | chr2_2:36989650-36989669 | Msa0249660:intron | 50.0% | |
| ! | TTACAGTTCTCAAGGCACCC+TGG | - | chr2_2:36989671-36989690 | None:intergenic | 50.0% |
| ! | TCTTGAAGTATTTGGGGGGG+GGG | - | chr2_2:36990271-36990290 | None:intergenic | 50.0% |
| ! | CTCTTGAAGTATTTGGGGGG+GGG | - | chr2_2:36990272-36990291 | None:intergenic | 50.0% |
| ATGGTACGAGTTCGGGTACA+CGG | - | chr2_2:36990302-36990321 | None:intergenic | 50.0% | |
| GTAAGTGGGAGTTGACGCTA+TGG | - | chr2_2:36990729-36990748 | None:intergenic | 50.0% | |
| TCAACTCCCACTTACCAACC+AGG | + | chr2_2:36990734-36990753 | Msa0249660:CDS | 50.0% | |
| !! | CGTTCACCTGGTTGGTAAGT+GGG | - | chr2_2:36990743-36990762 | None:intergenic | 50.0% |
| !! | TCGTTCACCTGGTTGGTAAG+TGG | - | chr2_2:36990744-36990763 | None:intergenic | 50.0% |
| CCAAATGGCACGAGCATTCT+GGG | - | chr2_2:36990813-36990832 | None:intergenic | 50.0% | |
| TCCAAATGGCACGAGCATTC+TGG | - | chr2_2:36990814-36990833 | None:intergenic | 50.0% | |
| !! | ATGCTCGTGCCATTTGGAAC+AGG | + | chr2_2:36990816-36990835 | Msa0249660:CDS | 50.0% |
| GGTAAGAGGCCTGTTCCAAA+TGG | - | chr2_2:36990828-36990847 | None:intergenic | 50.0% | |
| ! | GTTAAGGGAGAGAAGGTGTG+AGG | - | chr2_2:36990898-36990917 | None:intergenic | 50.0% |
| CGCAGAGGTTGAACTAGGAG+AGG | - | chr2_2:36988071-36988090 | None:intergenic | 55.0% | |
| GGAGAGGAGAGGAGTGAGTT+AGG | - | chr2_2:36988104-36988123 | None:intergenic | 55.0% | |
| CACTCCTCTCCTCTCCTCAA+TGG | + | chr2_2:36988108-36988127 | Msa0249660:exon | 55.0% | |
| GAAGCCATTGAGGAGAGGAG+AGG | - | chr2_2:36988115-36988134 | None:intergenic | 55.0% | |
| TGGAGGAAGCCATTGAGGAG+AGG | - | chr2_2:36988120-36988139 | None:intergenic | 55.0% | |
| !! | GAATTGGGTGGTGGAGAGAG+GGG | - | chr2_2:36988165-36988184 | None:intergenic | 55.0% |
| !! | GAGAATTGGGTGGTGGAGAG+AGG | - | chr2_2:36988167-36988186 | None:intergenic | 55.0% |
| TGGATGTGAGGAGGAGTGAG+CGG | - | chr2_2:36988207-36988226 | None:intergenic | 55.0% | |
| !! | ATGGTGGGGTTTGGTGGTTG+TGG | - | chr2_2:36988274-36988293 | None:intergenic | 55.0% |
| ! | AAGATGCGGTCGGTGATGGT+GGG | - | chr2_2:36988289-36988308 | None:intergenic | 55.0% |
| CATGAAGATGCGGTCGGTGA+TGG | - | chr2_2:36988293-36988312 | None:intergenic | 55.0% | |
| CATCACCGACCGCATCTTCA+TGG | + | chr2_2:36988291-36988310 | Msa0249660:CDS | 55.0% | |
| TACCTCCCAAATCGCACCCT+CGG | + | chr2_2:36988337-36988356 | Msa0249660:CDS | 55.0% | |
| GTAAGGTGGAGTCGGAGCAT+AGG | - | chr2_2:36988378-36988397 | None:intergenic | 55.0% | |
| TGCTCCGACTCCACCTTACT+CGG | + | chr2_2:36988379-36988398 | Msa0249660:CDS | 55.0% | |
| AATGACGCGACCGAGTAAGG+TGG | - | chr2_2:36988392-36988411 | None:intergenic | 55.0% | |
| GAGAATGACGCGACCGAGTA+AGG | - | chr2_2:36988395-36988414 | None:intergenic | 55.0% | |
| GTGGAACGAGGTTACCGTAG+AGG | - | chr2_2:36988420-36988439 | None:intergenic | 55.0% | |
| TTGAGACTGTGCGTGGAACG+AGG | - | chr2_2:36988432-36988451 | None:intergenic | 55.0% | |
| CGTCAGGGTCGTCCTGAAAA+AGG | + | chr2_2:36988550-36988569 | Msa0249660:CDS | 55.0% | |
| AGCGAAAGCGAAACAACGCC+GGG | - | chr2_2:36988655-36988674 | None:intergenic | 55.0% | |
| GAGCGAAAGCGAAACAACGC+CGG | - | chr2_2:36988656-36988675 | None:intergenic | 55.0% | |
| TCAAGCTGAGGACAAGGTCC+AGG | - | chr2_2:36988754-36988773 | None:intergenic | 55.0% | |
| CACTTATGCGCAGTCCTCCT+GGG | - | chr2_2:36988959-36988978 | None:intergenic | 55.0% | |
| ACACTTATGCGCAGTCCTCC+TGG | - | chr2_2:36988960-36988979 | None:intergenic | 55.0% | |
| AAAGGATCCCTTGCCTGCCA+TGG | - | chr2_2:36989310-36989329 | None:intergenic | 55.0% | |
| ! | TTGAAGTATTTGGGGGGGGG+GGG | - | chr2_2:36990269-36990288 | None:intergenic | 55.0% |
| ! | CTTGAAGTATTTGGGGGGGG+GGG | - | chr2_2:36990270-36990289 | None:intergenic | 55.0% |
| GGCGAATTCGTTCACCTGGT+TGG | - | chr2_2:36990751-36990770 | None:intergenic | 55.0% | |
| ! | CCCAGAATGCTCGTGCCATT+TGG | + | chr2_2:36990810-36990829 | Msa0249660:CDS | 55.0% |
| ! | TAGTGACTGTGGGGTGCTAG+AGG | + | chr2_2:36990859-36990878 | Msa0249660:CDS | 55.0% |
| !! | GGGGAGTGGTGGTGGTTGTT+GGG | - | chr2_2:36988146-36988165 | None:intergenic | 60.0% |
| !! | AGGGGAGTGGTGGTGGTTGT+TGG | - | chr2_2:36988147-36988166 | None:intergenic | 60.0% |
| ATGTGAGGAGGAGTGAGCGG+CGG | - | chr2_2:36988204-36988223 | None:intergenic | 60.0% | |
| !! | TGGTGGTGGTGGATGTGAGG+AGG | - | chr2_2:36988216-36988235 | None:intergenic | 60.0% |
| !! | GTGTGGTGGTGGTGGATGTG+AGG | - | chr2_2:36988219-36988238 | None:intergenic | 60.0% |
| !! | GAAGGTGAGTGTGGTGGTGG+TGG | - | chr2_2:36988227-36988246 | None:intergenic | 60.0% |
| TGGTGAAGCGGAGGAGGAGA+GGG | - | chr2_2:36988254-36988273 | None:intergenic | 60.0% | |
| TGGTTGTGGTGAAGCGGAGG+AGG | - | chr2_2:36988260-36988279 | None:intergenic | 60.0% | |
| TGGTGGTTGTGGTGAAGCGG+AGG | - | chr2_2:36988263-36988282 | None:intergenic | 60.0% | |
| !! | TCGGTGATGGTGGGGTTTGG+TGG | - | chr2_2:36988280-36988299 | None:intergenic | 60.0% |
| ! | AGATGCGGTCGGTGATGGTG+GGG | - | chr2_2:36988288-36988307 | None:intergenic | 60.0% |
| ! | GAAGATGCGGTCGGTGATGG+TGG | - | chr2_2:36988290-36988309 | None:intergenic | 60.0% |
| GGAGGTAGTAGTTGGGGCAG+AGG | - | chr2_2:36988324-36988343 | None:intergenic | 60.0% | |
| ! | TGTCGCCGAGGGTGCGATTT+GGG | - | chr2_2:36988345-36988364 | None:intergenic | 60.0% |
| GTCGGAGCATAGGGTGGAGA+TGG | - | chr2_2:36988368-36988387 | None:intergenic | 60.0% | |
| GCGACCGAGTAAGGTGGAGT+CGG | - | chr2_2:36988386-36988405 | None:intergenic | 60.0% | |
| CGCGTCATTCTCGGCCTCTA+CGG | + | chr2_2:36988403-36988422 | Msa0249660:CDS | 60.0% | |
| GGGTCGTCCTGAAAAAGGCG+AGG | + | chr2_2:36988555-36988574 | Msa0249660:CDS | 60.0% | |
| ATGTTGCGTGGGAGGTGACG+AGG | - | chr2_2:36988589-36988608 | None:intergenic | 60.0% | |
| TGCGTCAGCGCAAACGCCTT+GGG | - | chr2_2:36988625-36988644 | None:intergenic | 60.0% | |
| ATGCGTCAGCGCAAACGCCT+TGG | - | chr2_2:36988626-36988645 | None:intergenic | 60.0% | |
| GCGAAAGCGAAACAACGCCG+GGG | - | chr2_2:36988654-36988673 | None:intergenic | 60.0% | |
| AGGACAAGGTCCAGGTCCAG+TGG | - | chr2_2:36988746-36988765 | None:intergenic | 60.0% | |
| GCATAGCCCTCATACCCAGG+AGG | + | chr2_2:36988942-36988961 | Msa0249660:intron | 60.0% | |
| CGCAGTCCTCCTGGGTATGA+GGG | - | chr2_2:36988951-36988970 | None:intergenic | 60.0% | |
| ! | GGGGGGGGGGTATACATAGT+TGG | - | chr2_2:36990252-36990271 | None:intergenic | 60.0% |
| ! | TGAAGTATTTGGGGGGGGGG+GGG | - | chr2_2:36990268-36990287 | None:intergenic | 60.0% |
| ! | GGGAGAGAAGGTGTGAGGGA+AGG | - | chr2_2:36990893-36990912 | None:intergenic | 60.0% |
| TGGAGAGAGGGGAGTGGTGG+TGG | - | chr2_2:36988154-36988173 | None:intergenic | 65.0% | |
| TGGTGGAGAGAGGGGAGTGG+TGG | - | chr2_2:36988157-36988176 | None:intergenic | 65.0% | |
| ! | AGTGAGCGGCGGGTGATGGT+GGG | - | chr2_2:36988193-36988212 | None:intergenic | 65.0% |
| TGTGAGGAGGAGTGAGCGGC+GGG | - | chr2_2:36988203-36988222 | None:intergenic | 65.0% | |
| GGGGAAGGTGAGTGTGGTGG+TGG | - | chr2_2:36988230-36988249 | None:intergenic | 65.0% | |
| GGAGGGGAAGGTGAGTGTGG+TGG | - | chr2_2:36988233-36988252 | None:intergenic | 65.0% | |
| GAGGGAGGGGAAGGTGAGTG+TGG | - | chr2_2:36988236-36988255 | None:intergenic | 65.0% | |
| AAGCGGAGGAGGAGAGGGAG+GGG | - | chr2_2:36988249-36988268 | None:intergenic | 65.0% | |
| GAAGCGGAGGAGGAGAGGGA+GGG | - | chr2_2:36988250-36988269 | None:intergenic | 65.0% | |
| TGAAGCGGAGGAGGAGAGGG+AGG | - | chr2_2:36988251-36988270 | None:intergenic | 65.0% | |
| GTGGTGAAGCGGAGGAGGAG+AGG | - | chr2_2:36988255-36988274 | None:intergenic | 65.0% | |
| !! | CGGTCGGTGATGGTGGGGTT+TGG | - | chr2_2:36988283-36988302 | None:intergenic | 65.0% |
| ! | GTGTCGCCGAGGGTGCGATT+TGG | - | chr2_2:36988346-36988365 | None:intergenic | 65.0% |
| !! | GGTGGAGATGGTGTCGCCGA+GGG | - | chr2_2:36988356-36988375 | None:intergenic | 65.0% |
| GGTGGAGTCGGAGCATAGGG+TGG | - | chr2_2:36988374-36988393 | None:intergenic | 65.0% | |
| ! | GGGCGGACCTCGCCTTTTTC+AGG | - | chr2_2:36988565-36988584 | None:intergenic | 65.0% |
| TGCGTGGGAGGTGACGAGGA+GGG | - | chr2_2:36988585-36988604 | None:intergenic | 65.0% | |
| TTGCGTGGGAGGTGACGAGG+AGG | - | chr2_2:36988586-36988605 | None:intergenic | 65.0% | |
| GCGTCAGCGCAAACGCCTTG+GGG | - | chr2_2:36988624-36988643 | None:intergenic | 65.0% | |
| GCGCAGTCCTCCTGGGTATG+AGG | - | chr2_2:36988952-36988971 | None:intergenic | 65.0% | |
| AAGTATTTGGGGGGGGGGGG+GGG | - | chr2_2:36990266-36990285 | None:intergenic | 65.0% | |
| ! | GAAGTATTTGGGGGGGGGGG+GGG | - | chr2_2:36990267-36990286 | None:intergenic | 65.0% |
| !! | GGGTGGTGGAGAGAGGGGAG+TGG | - | chr2_2:36988160-36988179 | None:intergenic | 70.0% |
| ! | GAGTGAGCGGCGGGTGATGG+TGG | - | chr2_2:36988194-36988213 | None:intergenic | 70.0% |
| GAGGAGTGAGCGGCGGGTGA+TGG | - | chr2_2:36988197-36988216 | None:intergenic | 70.0% | |
| GGAGGAGGAGAGGGAGGGGA+AGG | - | chr2_2:36988245-36988264 | None:intergenic | 70.0% | |
| ! | CGCCGAGGGTGCGATTTGGG+AGG | - | chr2_2:36988342-36988361 | None:intergenic | 70.0% |
| !! | GGGTGGAGATGGTGTCGCCG+AGG | - | chr2_2:36988357-36988376 | None:intergenic | 70.0% |
| GTGGGAGGTGACGAGGAGGG+CGG | - | chr2_2:36988582-36988601 | None:intergenic | 70.0% | |
| ! | GCGCTGACGCATTCTCGCCC+CGG | + | chr2_2:36988634-36988653 | Msa0249660:CDS | 70.0% |
| AGTATTTGGGGGGGGGGGGG+GGG | - | chr2_2:36990265-36990284 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 36988066 | 36991021 | 36988066 | ID=Msa0249660;Name=Msa0249660 |
| chr2_2 | mRNA | 36988066 | 36991021 | 36988066 | ID=Msa0249660-mRNA-1;Parent=Msa0249660;Name=Msa0249660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=61|1|1|1|1|1|2|105|296 |
| chr2_2 | exon | 36988066 | 36988808 | 36988066 | ID=Msa0249660-mRNA-1:exon:11731;Parent=Msa0249660-mRNA-1 |
| chr2_2 | exon | 36990708 | 36991021 | 36990708 | ID=Msa0249660-mRNA-1:exon:11732;Parent=Msa0249660-mRNA-1 |
| chr2_2 | five_prime_UTR | 36988066 | 36988126 | 36988066 | ID=Msa0249660-mRNA-1:five_prime_utr;Parent=Msa0249660-mRNA-1 |
| chr2_2 | CDS | 36988127 | 36988808 | 36988127 | ID=Msa0249660-mRNA-1:cds;Parent=Msa0249660-mRNA-1 |
| chr2_2 | CDS | 36990708 | 36990916 | 36990708 | ID=Msa0249660-mRNA-1:cds;Parent=Msa0249660-mRNA-1 |
| chr2_2 | three_prime_UTR | 36990917 | 36991021 | 36990917 | ID=Msa0249660-mRNA-1:three_prime_utr;Parent=Msa0249660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
