Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630770 | XP_013454888.1 | 91.414 | 198 | 13 | 1 | 54 | 251 | 1 | 194 | 1.59e-110 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630770 | sp|Q8LDV3|Y4320_ARATH | 73.750 | 80 | 19 | 1 | 122 | 201 | 65 | 142 | 1.72e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0630770 | 0.824549 | 7.601026e-54 | -8.615850e-47 |
| Msa0017300 | Msa0630770 | 0.802704 | 4.945509e-49 | -8.615850e-47 |
| Msa0030700 | Msa0630770 | -0.803260 | 3.794434e-49 | -8.615850e-47 |
| Msa0033840 | Msa0630770 | 0.811482 | 6.848649e-51 | -8.615850e-47 |
| Msa0081610 | Msa0630770 | 0.807147 | 5.826090e-50 | -8.615850e-47 |
| Msa0630770 | Msa0693330 | -0.810142 | 1.334912e-50 | -8.615850e-47 |
| Msa0630770 | Msa0693340 | 0.838315 | 3.094119e-57 | -8.615850e-47 |
| Msa0630770 | Msa0697680 | -0.801449 | 8.956792e-49 | -8.615850e-47 |
| Msa0630770 | Msa0720740 | -0.800629 | 1.317679e-48 | -8.615850e-47 |
| Msa0630770 | Msa0734250 | -0.817467 | 3.248555e-52 | -8.615850e-47 |
| Msa0630770 | Msa0752450 | -0.808020 | 3.802653e-50 | -8.615850e-47 |
| Msa0630770 | Msa0830660 | -0.813910 | 2.014775e-51 | -8.615850e-47 |
| Msa0630770 | Msa0842140 | -0.803137 | 4.024304e-49 | -8.615850e-47 |
| Msa0630770 | Msa0959520 | -0.805400 | 1.359559e-49 | -8.615850e-47 |
| Msa0630770 | Msa1023210 | -0.807786 | 4.264080e-50 | -8.615850e-47 |
| Msa0630770 | Msa1085610 | 0.832715 | 8.069226e-56 | -8.615850e-47 |
| Msa0630770 | Msa1123770 | -0.804282 | 2.328419e-49 | -8.615850e-47 |
| Msa0630770 | Msa1129300 | 0.825622 | 4.240090e-54 | -8.615850e-47 |
| Msa0630770 | Msa1143370 | 0.806118 | 9.607492e-50 | -8.615850e-47 |
| Msa0630770 | Msa1150960 | -0.820572 | 6.391119e-53 | -8.615850e-47 |
| Msa0630770 | Msa1169910 | -0.805733 | 1.157811e-49 | -8.615850e-47 |
| Msa0630770 | Msa1190100 | 0.837193 | 6.007111e-57 | -8.615850e-47 |
| Msa0630770 | Msa1206450 | 0.805767 | 1.138926e-49 | -8.615850e-47 |
| Msa0630770 | Msa1213040 | -0.815626 | 8.397090e-52 | -8.615850e-47 |
| Msa0630770 | Msa1225860 | 0.830170 | 3.415015e-55 | -8.615850e-47 |
| Msa0630770 | Msa1236110 | 0.821743 | 3.433142e-53 | -8.615850e-47 |
| Msa0630770 | Msa1257570 | -0.811055 | 8.476984e-51 | -8.615850e-47 |
| Msa0630770 | Msa1258030 | 0.826095 | 3.273033e-54 | -8.615850e-47 |
| Msa0630770 | Msa1260220 | -0.803492 | 3.397335e-49 | -8.615850e-47 |
| Msa0630770 | Msa1325410 | 0.803192 | 3.919443e-49 | -8.615850e-47 |
| Msa0630770 | Msa1340200 | -0.834965 | 2.209087e-56 | -8.615850e-47 |
| Msa0630770 | Msa1365820 | -0.818706 | 1.703956e-52 | -8.615850e-47 |
| Msa0630770 | Msa1368390 | -0.828589 | 8.265254e-55 | -8.615850e-47 |
| Msa0630770 | Msa1370450 | -0.810530 | 1.101209e-50 | -8.615850e-47 |
| Msa0630770 | Msa1375610 | 0.810122 | 1.348690e-50 | -8.615850e-47 |
| Msa0630770 | Msa1376550 | 0.825369 | 4.867828e-54 | -8.615850e-47 |
| Msa0630770 | Msa1383960 | -0.805508 | 1.290291e-49 | -8.615850e-47 |
| Msa0630770 | Msa1385720 | -0.806989 | 6.290689e-50 | -8.615850e-47 |
| Msa0630770 | Msa1407840 | -0.800095 | 1.692340e-48 | -8.615850e-47 |
| Msa0630770 | Msa1433870 | -0.800258 | 1.568152e-48 | -8.615850e-47 |
| Msa0630770 | Msa1434090 | -0.816427 | 5.562594e-52 | -8.615850e-47 |
| Msa0630770 | Msa1457770 | -0.809283 | 2.042776e-50 | -8.615850e-47 |
| Msa0630770 | Msa1464090 | -0.845598 | 3.674357e-59 | -8.615850e-47 |
| Msa0140770 | Msa0630770 | 0.837308 | 5.610694e-57 | -8.615850e-47 |
| Msa0168770 | Msa0630770 | 0.810675 | 1.024634e-50 | -8.615850e-47 |
| Msa0173950 | Msa0630770 | 0.808515 | 2.982537e-50 | -8.615850e-47 |
| Msa0187590 | Msa0630770 | 0.826141 | 3.192776e-54 | -8.615850e-47 |
| Msa0199940 | Msa0630770 | -0.805478 | 1.309263e-49 | -8.615850e-47 |
| Msa0209140 | Msa0630770 | -0.815641 | 8.331558e-52 | -8.615850e-47 |
| Msa0216340 | Msa0630770 | -0.806312 | 8.743357e-50 | -8.615850e-47 |
| Msa0380400 | Msa0630770 | 0.826352 | 2.843226e-54 | -8.615850e-47 |
| Msa0386880 | Msa0630770 | -0.802433 | 5.624036e-49 | -8.615850e-47 |
| Msa0412790 | Msa0630770 | -0.814820 | 1.267966e-51 | -8.615850e-47 |
| Msa0450400 | Msa0630770 | 0.800648 | 1.305862e-48 | -8.615850e-47 |
| Msa0476170 | Msa0630770 | 0.825335 | 4.958864e-54 | -8.615850e-47 |
| Msa0479760 | Msa0630770 | 0.835449 | 1.666869e-56 | -8.615850e-47 |
| Msa0249660 | Msa0630770 | 0.823691 | 1.208518e-53 | -8.615850e-47 |
| Msa0288620 | Msa0630770 | -0.810879 | 9.252675e-51 | -8.615850e-47 |
| Msa0319920 | Msa0630770 | -0.814132 | 1.800244e-51 | -8.615850e-47 |
| Msa0333610 | Msa0630770 | -0.801557 | 8.510467e-49 | -8.615850e-47 |
| Msa0334450 | Msa0630770 | 0.816605 | 5.072543e-52 | -8.615850e-47 |
| Msa0523430 | Msa0630770 | 0.832895 | 7.279455e-56 | -8.615850e-47 |
| Msa0523490 | Msa0630770 | 0.830506 | 2.826277e-55 | -8.615850e-47 |
| Msa0559450 | Msa0630770 | 0.830340 | 3.103591e-55 | -8.615850e-47 |
| Msa0559650 | Msa0630770 | 0.803549 | 3.306644e-49 | -8.615850e-47 |
| Msa0572550 | Msa0630770 | 0.813535 | 2.437059e-51 | -8.615850e-47 |
| Msa0576020 | Msa0630770 | 0.825726 | 4.004859e-54 | -8.615850e-47 |
| Msa0576080 | Msa0630770 | 0.840932 | 6.455175e-58 | -8.615850e-47 |
| Msa0576090 | Msa0630770 | 0.806306 | 8.771816e-50 | -8.615850e-47 |
| Msa0576120 | Msa0630770 | 0.835011 | 2.150480e-56 | -8.615850e-47 |
| Msa0583360 | Msa0630770 | 0.833203 | 6.104470e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630770 | MtrunA17_Chr4g0007661 | 91.414 | 198 | 13 | 1 | 54 | 251 | 1 | 194 | 1.46e-114 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630770 | AT4G13200.1 | 73.750 | 80 | 19 | 1 | 122 | 201 | 65 | 142 | 1.75e-34 | 122 |
Find 76 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCCCCGTTTCTTGAAAT+TGG | 0.128204 | 4_3:-12855480 | Msa0630770:three_prime_UTR |
| GAGGATGTTGGAAAAGGTTT+TGG | 0.267900 | 4_3:+12858090 | None:intergenic |
| TTCAACCGATCCAGTTATTT+CGG | 0.306207 | 4_3:-12855675 | Msa0630770:CDS |
| AAAACAAGTACAGGAATTTC+AGG | 0.306473 | 4_3:-12856677 | Msa0630770:intron |
| TTTATGTTTACTTCTTCCTT+TGG | 0.342946 | 4_3:-12855539 | Msa0630770:three_prime_UTR |
| ACATTCCAATTTCAAGAAAC+GGG | 0.364619 | 4_3:+12855475 | None:intergenic |
| CACATTCCAATTTCAAGAAA+CGG | 0.378190 | 4_3:+12855474 | None:intergenic |
| AGTGGGCTCAATGTATGTTT+CGG | 0.401799 | 4_3:+12855634 | None:intergenic |
| GTAGACTGTACCGAAATAAC+TGG | 0.416907 | 4_3:+12855665 | None:intergenic |
| GTGATTATACCTCGATGAAT+AGG | 0.423022 | 4_3:-12855454 | Msa0630770:three_prime_UTR |
| AACTTCCCAGCTGCAACAAA+AGG | 0.425530 | 4_3:-12858036 | Msa0630770:CDS |
| AGAAGAAAGAACGGGGATGT+TGG | 0.427083 | 4_3:+12859036 | None:intergenic |
| TGTTCGCTTATTTGATAACT+TGG | 0.429043 | 4_3:-12855431 | Msa0630770:three_prime_UTR |
| AGAAGAAGGAACGAGGATGT+TGG | 0.451824 | 4_3:+12858078 | None:intergenic |
| CAACAACCTTTGTTTCTCCT+AGG | 0.463864 | 4_3:-12859075 | Msa0630770:CDS |
| GAAGCAAAGGTTGTTGGAGA+TGG | 0.466506 | 4_3:+12858124 | None:intergenic |
| ACTGGGAAGTTGAATGCATA+TGG | 0.468010 | 4_3:+12859006 | None:intergenic |
| CAACAACCTTTGCTTCTCCT+AGG | 0.470890 | 4_3:-12858117 | Msa0630770:CDS |
| GCTGGGAAGTTGAATGCATA+TGG | 0.471661 | 4_3:+12858048 | None:intergenic |
| CTAGGAGAAGCAAAGGTTGT+TGG | 0.471692 | 4_3:+12858118 | None:intergenic |
| GTGGTGGATACATCTACTTC+AGG | 0.473097 | 4_3:-12855710 | Msa0630770:CDS |
| ATCTTTGAGGTGATTTGTGT+TGG | 0.475255 | 4_3:-12855392 | Msa0630770:three_prime_UTR |
| ACTTCCCAGCTGCAACAAAA+GGG | 0.495869 | 4_3:-12858035 | Msa0630770:CDS |
| GAAACAAAGGTTGTTGGAGA+TGG | 0.496061 | 4_3:+12859082 | None:intergenic |
| AAGTTGAATGCATATGGGTT+TGG | 0.499196 | 4_3:+12859012 | None:intergenic |
| TATCACTTATGAACTTAATG+TGG | 0.501100 | 4_3:+12855598 | None:intergenic |
| CTAGGAGAAACAAAGGTTGT+TGG | 0.503844 | 4_3:+12859076 | None:intergenic |
| AGGAACGAGGATGTTGGAAA+AGG | 0.507028 | 4_3:+12858084 | None:intergenic |
| TCTTATACAGGAAGAAGTGT+TGG | 0.510600 | 4_3:-12855828 | Msa0630770:intron |
| AGAGGCACAACCGCGGGGAC+TGG | 0.510821 | 4_3:-12855762 | Msa0630770:CDS |
| AGCTACAGAGGCACAACCGC+GGG | 0.512026 | 4_3:-12855768 | Msa0630770:CDS |
| TGTGGGATCTTCCCCTTCAG+TGG | 0.516824 | 4_3:+12855616 | None:intergenic |
| TCTTTGAGGTGATTTGTGTT+GGG | 0.518896 | 4_3:-12855391 | Msa0630770:three_prime_UTR |
| AGATGGTGAAGGGGAGAAAG+TGG | 0.519266 | 4_3:+12858141 | None:intergenic |
| CAAAACACATAGACACAACA+AGG | 0.526389 | 4_3:-12858183 | Msa0630770:intron |
| AGATGGTGAAGGGGAGAGAG+TGG | 0.528994 | 4_3:+12859099 | None:intergenic |
| AGGTTGTTGGAGATGGTGAA+GGG | 0.534950 | 4_3:+12859089 | None:intergenic |
| CTGGGAAGTTGAATGCATAT+GGG | 0.535121 | 4_3:+12859007 | None:intergenic |
| ATCACTTATGAACTTAATGT+GGG | 0.538123 | 4_3:+12855599 | None:intergenic |
| CTGGGAAGTTGAATGCATAT+GGG | 0.538772 | 4_3:+12858049 | None:intergenic |
| AAGGTTGTTGGAGATGGTGA+AGG | 0.541919 | 4_3:+12858130 | None:intergenic |
| AAGGTTGTTGGAGATGGTGA+AGG | 0.541919 | 4_3:+12859088 | None:intergenic |
| GGTGAGCTCTTGAGTACAGT+TGG | 0.546113 | 4_3:-12856721 | Msa0630770:CDS |
| GAGCGCATTGAGTCGACACT+TGG | 0.551517 | 4_3:-12856742 | Msa0630770:CDS |
| AGAAAATAGTTTACCAGAGG+GGG | 0.554404 | 4_3:+12857961 | None:intergenic |
| GTGGGATCTTCCCCTTCAGT+GGG | 0.556101 | 4_3:+12855617 | None:intergenic |
| AGGTTGTTGGAGATGGTGAA+GGG | 0.556621 | 4_3:+12858131 | None:intergenic |
| GGTTTGGAAGAAGAAAGAAC+GGG | 0.559934 | 4_3:+12859028 | None:intergenic |
| GGGTTTGGAAGAAGAAAGAA+CGG | 0.569462 | 4_3:+12859027 | None:intergenic |
| GGAGAACCTAGGAGAAGCAA+AGG | 0.571265 | 4_3:+12858111 | None:intergenic |
| TGTAACAATACCTTCTTCCC+TGG | 0.577863 | 4_3:-12857989 | Msa0630770:CDS |
| TTCTGTAGAAGCTGTAGACT+CGG | 0.589146 | 4_3:+12855736 | None:intergenic |
| ACATACATTGAGCCCACTGA+AGG | 0.589905 | 4_3:-12855629 | Msa0630770:CDS |
| GGACAACCTAGGAGAAACAA+AGG | 0.599484 | 4_3:+12859069 | None:intergenic |
| AACAATACCTTCTTCCCTGG+TGG | 0.600187 | 4_3:-12857986 | Msa0630770:CDS |
| CTGTACCGAAATAACTGGAT+CGG | 0.601265 | 4_3:+12855670 | None:intergenic |
| CTTCCCAGCTGCAACAAAAG+GGG | 0.603370 | 4_3:-12858034 | Msa0630770:CDS |
| CATATGGGTTTAGAAGAAGA+AGG | 0.605324 | 4_3:+12858064 | None:intergenic |
| GGTTGTTGGAGATGGTGAAG+GGG | 0.622915 | 4_3:+12858132 | None:intergenic |
| GGTTGTTGGAGATGGTGAAG+GGG | 0.622915 | 4_3:+12859090 | None:intergenic |
| CATTCCAATTTCAAGAAACG+GGG | 0.623067 | 4_3:+12855476 | None:intergenic |
| TACAGCTTCTACAGAAGTCG+TGG | 0.624697 | 4_3:-12855729 | Msa0630770:CDS |
| AAGAAAATAGTTTACCAGAG+GGG | 0.627466 | 4_3:+12857960 | None:intergenic |
| ATACATTGAGCCCACTGAAG+GGG | 0.633289 | 4_3:-12855627 | Msa0630770:CDS |
| CATACATTGAGCCCACTGAA+GGG | 0.638017 | 4_3:-12855628 | Msa0630770:CDS |
| TGGTGAAGGGGAGAAAGTGG+TGG | 0.640956 | 4_3:+12858144 | None:intergenic |
| GTTTAGAAGAAGAAGGAACG+AGG | 0.643469 | 4_3:+12858071 | None:intergenic |
| AGCTTCTACAGAAGTCGTGG+TGG | 0.651039 | 4_3:-12855726 | Msa0630770:CDS |
| AGCAGCGCGTGAAGCTACAG+AGG | 0.653253 | 4_3:-12855780 | Msa0630770:CDS |
| AACTTACATATACATGCCAA+AGG | 0.655340 | 4_3:+12855523 | None:intergenic |
| GAAAATAGTTTACCAGAGGG+GGG | 0.678778 | 4_3:+12857962 | None:intergenic |
| AAGCTACAGAGGCACAACCG+CGG | 0.698235 | 4_3:-12855769 | Msa0630770:CDS |
| GACTCGGAAACCAGTCCCCG+CGG | 0.698498 | 4_3:+12855752 | None:intergenic |
| GCTACAGAGGCACAACCGCG+GGG | 0.709325 | 4_3:-12855767 | Msa0630770:CDS |
| GTTTGGAAGAAGAAAGAACG+GGG | 0.722229 | 4_3:+12859029 | None:intergenic |
| AAGCGAACACCTATTCATCG+AGG | 0.749972 | 4_3:+12855445 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAGATTAATTTAATAA+AGG | - | chr4_3:12855730-12855749 | Msa0630770:CDS | 10.0% |
| !!! | TGATTTTTCATAACAAATTT+AGG | - | chr4_3:12855584-12855603 | Msa0630770:three_prime_UTR | 15.0% |
| !!! | GATTTTTCATAACAAATTTA+GGG | - | chr4_3:12855585-12855604 | Msa0630770:exon | 15.0% |
| !!! | TAAAATTTTACGATATATAC+TGG | - | chr4_3:12855664-12855683 | Msa0630770:CDS | 15.0% |
| !!! | AATATTTTTTGAAAATCAGT+AGG | + | chr4_3:12855854-12855873 | None:intergenic | 15.0% |
| !! | TAAATAGTTCAAATTAACAA+TGG | - | chr4_3:12855929-12855948 | Msa0630770:intron | 15.0% |
| !!! | GAAAAATCTTTTTTTTTTGA+GGG | + | chr4_3:12856172-12856191 | None:intergenic | 15.0% |
| !!! | AGAAAAATCTTTTTTTTTTG+AGG | + | chr4_3:12856173-12856192 | None:intergenic | 15.0% |
| !!! | AAACTTTTTTTTTTGTTTGA+AGG | + | chr4_3:12856205-12856224 | None:intergenic | 15.0% |
| !!! | TTTTGCTTTACTTTTAAATT+TGG | - | chr4_3:12856802-12856821 | Msa0630770:CDS | 15.0% |
| !!! | ATTTATTTCTTTGATAACTA+AGG | - | chr4_3:12857379-12857398 | Msa0630770:intron | 15.0% |
| !! | TACTAAAAAAATATATCGAA+AGG | + | chr4_3:12858936-12858955 | None:intergenic | 15.0% |
| !! | CTTTCTCTTATAAATAAAAC+TGG | - | chr4_3:12855803-12855822 | Msa0630770:CDS | 20.0% |
| !!! | ATTTTCTCTAGAATTTCATT+TGG | - | chr4_3:12856697-12856716 | Msa0630770:CDS | 20.0% |
| !!! | TTTTCTCTAGAATTTCATTT+GGG | - | chr4_3:12856698-12856717 | Msa0630770:CDS | 20.0% |
| !!! | AAGGATAGATAGTTTTTTAA+AGG | + | chr4_3:12857603-12857622 | None:intergenic | 20.0% |
| !!! | TATCCTTAGATTTTTGTTTT+AGG | - | chr4_3:12857616-12857635 | Msa0630770:intron | 20.0% |
| !! | AGTAAACAACAATATTGTTT+AGG | + | chr4_3:12857950-12857969 | None:intergenic | 20.0% |
| !! | TGTTTACTAACTATATTCAT+TGG | - | chr4_3:12857962-12857981 | Msa0630770:intron | 20.0% |
| !!! | AAAATGTTGTTACTTGTATT+GGG | - | chr4_3:12858244-12858263 | Msa0630770:intron | 20.0% |
| !!! | GAAAAAAAAGTTCCAAATTT+TGG | - | chr4_3:12858286-12858305 | Msa0630770:intron | 20.0% |
| !! | TAAATTATGTACCATTAGAT+TGG | + | chr4_3:12858583-12858602 | None:intergenic | 20.0% |
| !! | CGAAATTATAATTCTTATAC+AGG | - | chr4_3:12858656-12858675 | Msa0630770:intron | 20.0% |
| !! | TTTTCTCTTATAAATGAGAC+TGG | + | chr4_3:12855705-12855724 | None:intergenic | 25.0% |
| ! | CTCTTATAAATAAAACTGGA+AGG | - | chr4_3:12855807-12855826 | Msa0630770:CDS | 25.0% |
| ! | TATTACTATTACATCTTGTG+TGG | - | chr4_3:12856272-12856291 | Msa0630770:intron | 25.0% |
| ! | AAAGAAAATAGTTTACCAGA+GGG | + | chr4_3:12856540-12856559 | None:intergenic | 25.0% |
| !!! | TTTCTCTAGAATTTCATTTG+GGG | - | chr4_3:12856699-12856718 | Msa0630770:CDS | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | - | chr4_3:12856946-12856965 | Msa0630770:intron | 25.0% |
| !!! | TACTTTTCATTTAGCTCAAA+AGG | - | chr4_3:12857237-12857256 | Msa0630770:intron | 25.0% |
| !!! | GCAATTTTAATCCTAATCAA+AGG | + | chr4_3:12857352-12857371 | None:intergenic | 25.0% |
| ! | AAAACCAATGGTTTAAAAAC+CGG | + | chr4_3:12857508-12857527 | None:intergenic | 25.0% |
| ! | AATTTGGCAAAACTAAATTG+TGG | + | chr4_3:12857532-12857551 | None:intergenic | 25.0% |
| ! | GTACCTAAAACAAAAATCTA+AGG | + | chr4_3:12857622-12857641 | None:intergenic | 25.0% |
| ! | ATTCAATCTGTTATCTCATA+TGG | - | chr4_3:12857907-12857926 | Msa0630770:intron | 25.0% |
| ! | TTCAATCTGTTATCTCATAT+GGG | - | chr4_3:12857908-12857927 | Msa0630770:intron | 25.0% |
| ! | ATACTAATAATAGCTGGTAT+AGG | - | chr4_3:12858192-12858211 | Msa0630770:intron | 25.0% |
| !! | GAAAATGTTGTTACTTGTAT+TGG | - | chr4_3:12858243-12858262 | Msa0630770:intron | 25.0% |
| !! | AAATGTTGTTACTTGTATTG+GGG | - | chr4_3:12858245-12858264 | Msa0630770:intron | 25.0% |
| ! | TCTTCATAACTACCAAAATT+TGG | + | chr4_3:12858301-12858320 | None:intergenic | 25.0% |
| ! | ATCAGTTATGTATTCCAAAA+TGG | - | chr4_3:12858341-12858360 | Msa0630770:intron | 25.0% |
| !! | ATTGACTCAGAAATTCAAAT+TGG | + | chr4_3:12858381-12858400 | None:intergenic | 25.0% |
| ! | TTTGCTGCAAAACATATTAT+TGG | - | chr4_3:12858402-12858421 | Msa0630770:intron | 25.0% |
| ! | TTGCTGCAAAACATATTATT+GGG | - | chr4_3:12858403-12858422 | Msa0630770:intron | 25.0% |
| !! | TAATTTAAAATGACCGCTTA+TGG | - | chr4_3:12858596-12858615 | Msa0630770:intron | 25.0% |
| !! | AATTTAAAATGACCGCTTAT+GGG | - | chr4_3:12858597-12858616 | Msa0630770:intron | 25.0% |
| ! | ATCACTTATGAACTTAATGT+GGG | + | chr4_3:12858900-12858919 | None:intergenic | 25.0% |
| ! | TATCACTTATGAACTTAATG+TGG | + | chr4_3:12858901-12858920 | None:intergenic | 25.0% |
| ! | TTTATGTTTACTTCTTCCTT+TGG | - | chr4_3:12858957-12858976 | Msa0630770:intron | 25.0% |
| !!! | TTTGCTTTTCATAATCTTTG+AGG | - | chr4_3:12859091-12859110 | Msa0630770:CDS | 25.0% |
| !! | ATAAAACTGGAAGGAGTATT+TGG | - | chr4_3:12855816-12855835 | Msa0630770:CDS | 30.0% |
| !! | TAACAATGGATTGATCCAAA+TGG | - | chr4_3:12855943-12855962 | Msa0630770:intron | 30.0% |
| AAGAAACTCGAGTCTATATT+TGG | - | chr4_3:12855968-12855987 | Msa0630770:intron | 30.0% | |
| TAGTACCTTAAAACTTTGCT+TGG | - | chr4_3:12856041-12856060 | Msa0630770:intron | 30.0% | |
| !! | ACACTTTAAGATCACAAGAA+AGG | + | chr4_3:12856080-12856099 | None:intergenic | 30.0% |
| ! | GTTGATAAAAAGTTGACACA+TGG | - | chr4_3:12856107-12856126 | Msa0630770:intron | 30.0% |
| AAGAAAATAGTTTACCAGAG+GGG | + | chr4_3:12856539-12856558 | None:intergenic | 30.0% | |
| GAAAGAAAATAGTTTACCAG+AGG | + | chr4_3:12856541-12856560 | None:intergenic | 30.0% | |
| CATCAAAATCAACAAGAGAA+AGG | + | chr4_3:12856563-12856582 | None:intergenic | 30.0% | |
| TATGAAGTACATATACTCCT+CGG | + | chr4_3:12856999-12857018 | None:intergenic | 30.0% | |
| GTTAGAATATTCTCCATCTT+TGG | + | chr4_3:12857297-12857316 | None:intergenic | 30.0% | |
| ACAATCACGATTAAACCAAT+CGG | - | chr4_3:12857444-12857463 | Msa0630770:intron | 30.0% | |
| CTAAATTGTGGAAAAACCAA+TGG | + | chr4_3:12857520-12857539 | None:intergenic | 30.0% | |
| CGAGTGTGTAATTACAAATT+TGG | + | chr4_3:12857548-12857567 | None:intergenic | 30.0% | |
| TCGTAAATATGTAGTTGACA+CGG | - | chr4_3:12857565-12857584 | Msa0630770:intron | 30.0% | |
| TTGAAGTATGTGAATCATGT+AGG | - | chr4_3:12857658-12857677 | Msa0630770:intron | 30.0% | |
| TGAACAACAAAAACAAGTAC+AGG | - | chr4_3:12857810-12857829 | Msa0630770:intron | 30.0% | |
| AAAACAAGTACAGGAATTTC+AGG | - | chr4_3:12857819-12857838 | Msa0630770:intron | 30.0% | |
| ! | AGGTAAGGAACATTTTCAAT+TGG | - | chr4_3:12857839-12857858 | Msa0630770:intron | 30.0% |
| TTGAAACTGTAGTCTATAGT+TGG | - | chr4_3:12858136-12858155 | Msa0630770:CDS | 30.0% | |
| TGAAACTGTAGTCTATAGTT+GGG | - | chr4_3:12858137-12858156 | Msa0630770:CDS | 30.0% | |
| ! | AATGTTGTTACTTGTATTGG+GGG | - | chr4_3:12858246-12858265 | Msa0630770:intron | 30.0% |
| GTATTCCAAAATGGTACATT+TGG | - | chr4_3:12858350-12858369 | Msa0630770:intron | 30.0% | |
| CTCAGAAATTCAAATTGGAT+TGG | + | chr4_3:12858376-12858395 | None:intergenic | 30.0% | |
| ! | TGGGCCATAAAAGTATATAT+CGG | - | chr4_3:12858422-12858441 | Msa0630770:intron | 30.0% |
| !! | TGCACCGATATATACTTTTA+TGG | + | chr4_3:12858429-12858448 | None:intergenic | 30.0% |
| CATGATTCATGCATATCAAA+TGG | - | chr4_3:12858452-12858471 | Msa0630770:intron | 30.0% | |
| !!! | TGCTTTTTCCTTTGCTTTTT+TGG | + | chr4_3:12858700-12858719 | None:intergenic | 30.0% |
| AACTTACATATACATGCCAA+AGG | + | chr4_3:12858976-12858995 | None:intergenic | 30.0% | |
| ACATTCCAATTTCAAGAAAC+GGG | + | chr4_3:12859024-12859043 | None:intergenic | 30.0% | |
| CACATTCCAATTTCAAGAAA+CGG | + | chr4_3:12859025-12859044 | None:intergenic | 30.0% | |
| ! | TGTTCGCTTATTTGATAACT+TGG | - | chr4_3:12859065-12859084 | Msa0630770:CDS | 30.0% |
| !!! | GAAAAAGTTTTGGACAACCT+AGG | + | chr4_3:12855441-12855460 | None:intergenic | 35.0% |
| AAGTTGAATGCATATGGGTT+TGG | + | chr4_3:12855487-12855506 | None:intergenic | 35.0% | |
| !! | CTTTCACTTTTGTTGTCACT+GGG | + | chr4_3:12855510-12855529 | None:intergenic | 35.0% |
| !! | ACTTTCACTTTTGTTGTCAC+TGG | + | chr4_3:12855511-12855530 | None:intergenic | 35.0% |
| ACTCGAGTTTCTTTACCATT+TGG | + | chr4_3:12855961-12855980 | None:intergenic | 35.0% | |
| ! | CATCTCCAAGCAAAGTTTTA+AGG | + | chr4_3:12856049-12856068 | None:intergenic | 35.0% |
| TAAAACTTTGCTTGGAGATG+CGG | - | chr4_3:12856049-12856068 | Msa0630770:intron | 35.0% | |
| CAAAACACATAGACACAACA+AGG | - | chr4_3:12856313-12856332 | Msa0630770:intron | 35.0% | |
| CATATGGGTTTAGAAGAAGA+AGG | + | chr4_3:12856435-12856454 | None:intergenic | 35.0% | |
| ! | AAAAGGGGTTTTCAGATCAA+TGG | - | chr4_3:12856477-12856496 | Msa0630770:intron | 35.0% |
| AGAAAATAGTTTACCAGAGG+GGG | + | chr4_3:12856538-12856557 | None:intergenic | 35.0% | |
| ! | TCTAGAATTTCATTTGGGGT+GGG | - | chr4_3:12856703-12856722 | Msa0630770:CDS | 35.0% |
| CGGTCTCATTTCAAAAACAT+GGG | + | chr4_3:12856833-12856852 | None:intergenic | 35.0% | |
| !!! | CCATGTTTTTGAAATGAGAC+CGG | - | chr4_3:12856831-12856850 | Msa0630770:intron | 35.0% |
| GAGTATATGTACTTCATAGC+TGG | - | chr4_3:12857001-12857020 | Msa0630770:intron | 35.0% | |
| CATATGAAAACATTCAACCG+TGG | - | chr4_3:12857056-12857075 | Msa0630770:intron | 35.0% | |
| GATGGAATAAAGTTCGATGT+TGG | - | chr4_3:12857156-12857175 | Msa0630770:intron | 35.0% | |
| AGAATATTCTCCATCTTTGG+TGG | + | chr4_3:12857294-12857313 | None:intergenic | 35.0% | |
| GGAGAATATTCTAACAGACT+TGG | - | chr4_3:12857302-12857321 | Msa0630770:intron | 35.0% | |
| TACAAGCAAGTCCTTTGATT+AGG | - | chr4_3:12857338-12857357 | Msa0630770:intron | 35.0% | |
| !! | GTTCTGGATGCATTTTTCTT+AGG | - | chr4_3:12857706-12857725 | Msa0630770:intron | 35.0% |
| ! | AAGTACAGGAATTTCAGGTA+AGG | - | chr4_3:12857824-12857843 | Msa0630770:intron | 35.0% |
| ATTGTGTTGTGCTGGATTTA+TGG | - | chr4_3:12857863-12857882 | Msa0630770:intron | 35.0% | |
| TACAAACTATCGTCAAGTAG+AGG | - | chr4_3:12858025-12858044 | Msa0630770:CDS | 35.0% | |
| GTTGGACGTTAATGTTCAAT+CGG | - | chr4_3:12858167-12858186 | Msa0630770:CDS | 35.0% | |
| TCGGCTATACTAATAATAGC+TGG | - | chr4_3:12858186-12858205 | Msa0630770:intron | 35.0% | |
| ! | ATGTTGTTACTTGTATTGGG+GGG | - | chr4_3:12858247-12858266 | Msa0630770:intron | 35.0% |
| ! | ATTGGCCAAATGTACCATTT+TGG | + | chr4_3:12858358-12858377 | None:intergenic | 35.0% |
| GACACAAAAATGACACTTGT+CGG | + | chr4_3:12858524-12858543 | None:intergenic | 35.0% | |
| GTGTCTGTATACCAATCTAA+TGG | - | chr4_3:12858569-12858588 | Msa0630770:intron | 35.0% | |
| ATCTAACATAGTCCCATAAG+CGG | + | chr4_3:12858612-12858631 | None:intergenic | 35.0% | |
| ! | TCTTATACAGGAAGAAGTGT+TGG | - | chr4_3:12858668-12858687 | Msa0630770:intron | 35.0% |
| TTCAACCGATCCAGTTATTT+CGG | - | chr4_3:12858821-12858840 | Msa0630770:intron | 35.0% | |
| CATTCCAATTTCAAGAAACG+GGG | + | chr4_3:12859023-12859042 | None:intergenic | 35.0% | |
| GTGATTATACCTCGATGAAT+AGG | - | chr4_3:12859042-12859061 | Msa0630770:CDS | 35.0% | |
| !! | ATCTTTGAGGTGATTTGTGT+TGG | - | chr4_3:12859104-12859123 | Msa0630770:CDS | 35.0% |
| !! | TCTTTGAGGTGATTTGTGTT+GGG | - | chr4_3:12859105-12859124 | Msa0630770:CDS | 35.0% |
| GAAACAAAGGTTGTTGGAGA+TGG | + | chr4_3:12855417-12855436 | None:intergenic | 40.0% | |
| CTAGGAGAAACAAAGGTTGT+TGG | + | chr4_3:12855423-12855442 | None:intergenic | 40.0% | |
| ! | CAACAACCTTTGTTTCTCCT+AGG | - | chr4_3:12855421-12855440 | Msa0630770:three_prime_UTR | 40.0% |
| ! | GGGGATGTTGGAAAAAGTTT+TGG | + | chr4_3:12855451-12855470 | None:intergenic | 40.0% |
| GTTTGGAAGAAGAAAGAACG+GGG | + | chr4_3:12855470-12855489 | None:intergenic | 40.0% | |
| GGTTTGGAAGAAGAAAGAAC+GGG | + | chr4_3:12855471-12855490 | None:intergenic | 40.0% | |
| GGGTTTGGAAGAAGAAAGAA+CGG | + | chr4_3:12855472-12855491 | None:intergenic | 40.0% | |
| CTGGGAAGTTGAATGCATAT+GGG | + | chr4_3:12855492-12855511 | None:intergenic | 40.0% | |
| ACTGGGAAGTTGAATGCATA+TGG | + | chr4_3:12855493-12855512 | None:intergenic | 40.0% | |
| ACTCGAGTCTATATTTGGCT+AGG | - | chr4_3:12855973-12855992 | Msa0630770:intron | 40.0% | |
| CTCGAGTCTATATTTGGCTA+GGG | - | chr4_3:12855974-12855993 | Msa0630770:intron | 40.0% | |
| TCGAGTCTATATTTGGCTAG+GGG | - | chr4_3:12855975-12855994 | Msa0630770:intron | 40.0% | |
| TACATCTTGTGTGGAAAGTG+TGG | - | chr4_3:12856281-12856300 | Msa0630770:intron | 40.0% | |
| ! | ACATCTTGTGTGGAAAGTGT+GGG | - | chr4_3:12856282-12856301 | Msa0630770:intron | 40.0% |
| !!! | GAAAAGGTTTTGGAGAACCT+AGG | + | chr4_3:12856399-12856418 | None:intergenic | 40.0% |
| ! | GAGGATGTTGGAAAAGGTTT+TGG | + | chr4_3:12856409-12856428 | None:intergenic | 40.0% |
| GTTTAGAAGAAGAAGGAACG+AGG | + | chr4_3:12856428-12856447 | None:intergenic | 40.0% | |
| CTGGGAAGTTGAATGCATAT+GGG | + | chr4_3:12855492-12855511 | None:intergenic | 40.0% | |
| TGTAACAATACCTTCTTCCC+TGG | - | chr4_3:12856507-12856526 | Msa0630770:intron | 40.0% | |
| GAAAATAGTTTACCAGAGGG+GGG | + | chr4_3:12856537-12856556 | None:intergenic | 40.0% | |
| !! | CTCTAGAATTTCATTTGGGG+TGG | - | chr4_3:12856702-12856721 | Msa0630770:CDS | 40.0% |
| CCGGTCTCATTTCAAAAACA+TGG | + | chr4_3:12856834-12856853 | None:intergenic | 40.0% | |
| AATGAGACCGGAAATCAAAC+CGG | - | chr4_3:12856843-12856862 | Msa0630770:intron | 40.0% | |
| GTACATATACTCCTCGGATT+AGG | + | chr4_3:12856993-12857012 | None:intergenic | 40.0% | |
| TGATCATCCTAGTTCACTAC+AGG | - | chr4_3:12857124-12857143 | Msa0630770:intron | 40.0% | |
| ACAACCATTTCCACCAAAGA+TGG | - | chr4_3:12857281-12857300 | Msa0630770:intron | 40.0% | |
| TTCTCCATCTTTGGTGGAAA+TGG | + | chr4_3:12857288-12857307 | None:intergenic | 40.0% | |
| ATCGTGATTGTAACACAGTC+TGG | + | chr4_3:12857435-12857454 | None:intergenic | 40.0% | |
| GATTAAACCAATCGGCAAAC+TGG | - | chr4_3:12857452-12857471 | Msa0630770:intron | 40.0% | |
| GTTTAAAAACCGGACTGAAC+TGG | + | chr4_3:12857498-12857517 | None:intergenic | 40.0% | |
| ! | CAGTCCGGTTTTTAAACCAT+TGG | - | chr4_3:12857501-12857520 | Msa0630770:intron | 40.0% |
| TATGTGAATCATGTAGGCGA+TGG | - | chr4_3:12857664-12857683 | Msa0630770:intron | 40.0% | |
| TAGCAGCAGCAAAAATGTTC+TGG | - | chr4_3:12857690-12857709 | Msa0630770:intron | 40.0% | |
| ! | ATCTCATATGGGTTTGCTTC+AGG | - | chr4_3:12857919-12857938 | Msa0630770:intron | 40.0% |
| ! | TCTCATATGGGTTTGCTTCA+GGG | - | chr4_3:12857920-12857939 | Msa0630770:intron | 40.0% |
| TAGTCTATAGTTGGGCACTT+GGG | - | chr4_3:12858145-12858164 | Msa0630770:CDS | 40.0% | |
| !! | GCTTGAATCTGAAGTGTTGA+TGG | + | chr4_3:12858490-12858509 | None:intergenic | 40.0% |
| TTCTGTAGAAGCTGTAGACT+CGG | + | chr4_3:12858763-12858782 | None:intergenic | 40.0% | |
| CTGTACCGAAATAACTGGAT+CGG | + | chr4_3:12858829-12858848 | None:intergenic | 40.0% | |
| GTAGACTGTACCGAAATAAC+TGG | + | chr4_3:12858834-12858853 | None:intergenic | 40.0% | |
| ! | AGTGGGCTCAATGTATGTTT+CGG | + | chr4_3:12858865-12858884 | None:intergenic | 40.0% |
| TGTTCCCCGTTTCTTGAAAT+TGG | - | chr4_3:12859016-12859035 | Msa0630770:CDS | 40.0% | |
| AGGTTGTTGGAGATGGTGAA+GGG | + | chr4_3:12855410-12855429 | None:intergenic | 45.0% | |
| AAGGTTGTTGGAGATGGTGA+AGG | + | chr4_3:12855411-12855430 | None:intergenic | 45.0% | |
| GGACAACCTAGGAGAAACAA+AGG | + | chr4_3:12855430-12855449 | None:intergenic | 45.0% | |
| AGAAGAAAGAACGGGGATGT+TGG | + | chr4_3:12855463-12855482 | None:intergenic | 45.0% | |
| AATTCCTGACGCATCAGGTT+GGG | - | chr4_3:12856001-12856020 | Msa0630770:intron | 45.0% | |
| AGGTTGTTGGAGATGGTGAA+GGG | + | chr4_3:12855410-12855429 | None:intergenic | 45.0% | |
| AAGGTTGTTGGAGATGGTGA+AGG | + | chr4_3:12855411-12855430 | None:intergenic | 45.0% | |
| GAAGCAAAGGTTGTTGGAGA+TGG | + | chr4_3:12856375-12856394 | None:intergenic | 45.0% | |
| CTAGGAGAAGCAAAGGTTGT+TGG | + | chr4_3:12856381-12856400 | None:intergenic | 45.0% | |
| CAACAACCTTTGCTTCTCCT+AGG | - | chr4_3:12856379-12856398 | Msa0630770:intron | 45.0% | |
| AGGAACGAGGATGTTGGAAA+AGG | + | chr4_3:12856415-12856434 | None:intergenic | 45.0% | |
| AGAAGAAGGAACGAGGATGT+TGG | + | chr4_3:12856421-12856440 | None:intergenic | 45.0% | |
| GCTGGGAAGTTGAATGCATA+TGG | + | chr4_3:12856451-12856470 | None:intergenic | 45.0% | |
| AACTTCCCAGCTGCAACAAA+AGG | - | chr4_3:12856460-12856479 | Msa0630770:intron | 45.0% | |
| ACTTCCCAGCTGCAACAAAA+GGG | - | chr4_3:12856461-12856480 | Msa0630770:intron | 45.0% | |
| ! | AAACCCCTTTTGTTGCAGCT+GGG | + | chr4_3:12856468-12856487 | None:intergenic | 45.0% |
| ! | AAAACCCCTTTTGTTGCAGC+TGG | + | chr4_3:12856469-12856488 | None:intergenic | 45.0% |
| AACAATACCTTCTTCCCTGG+TGG | - | chr4_3:12856510-12856529 | Msa0630770:intron | 45.0% | |
| ! | AGAATTTCATTTGGGGTGGG+TGG | - | chr4_3:12856706-12856725 | Msa0630770:CDS | 45.0% |
| ! | GAATTTCATTTGGGGTGGGT+GGG | - | chr4_3:12856707-12856726 | Msa0630770:CDS | 45.0% |
| TCATAGCTGGTGAGACATTC+TGG | - | chr4_3:12857014-12857033 | Msa0630770:intron | 45.0% | |
| TCACTGAATTGGCTGAACCA+CGG | + | chr4_3:12857076-12857095 | None:intergenic | 45.0% | |
| TTCAGCCAATTCAGTGAGAC+TGG | - | chr4_3:12857079-12857098 | Msa0630770:intron | 45.0% | |
| TCCAACCAGTCTCACTGAAT+TGG | + | chr4_3:12857087-12857106 | None:intergenic | 45.0% | |
| ! | GTGAGACTGGTTGGATTGTT+AGG | - | chr4_3:12857092-12857111 | Msa0630770:intron | 45.0% |
| TAGAGCTCCTGTAGTGAACT+AGG | + | chr4_3:12857134-12857153 | None:intergenic | 45.0% | |
| ! | CACTACAGGAGCTCTAATGA+TGG | - | chr4_3:12857138-12857157 | Msa0630770:intron | 45.0% |
| ! | TGGTCGATTCAACTAGGAAC+CGG | + | chr4_3:12857478-12857497 | None:intergenic | 45.0% |
| ! | CTGAACTGGTCGATTCAACT+AGG | + | chr4_3:12857484-12857503 | None:intergenic | 45.0% |
| TTGAATCGACCAGTTCAGTC+CGG | - | chr4_3:12857486-12857505 | Msa0630770:intron | 45.0% | |
| CAATTGGCATTGTGTTGTGC+TGG | - | chr4_3:12857855-12857874 | Msa0630770:intron | 45.0% | |
| GCATAGAGTTGAACAACAGC+AGG | + | chr4_3:12857998-12858017 | None:intergenic | 45.0% | |
| TCGTCAAGTAGAGGCTATAG+TGG | - | chr4_3:12858034-12858053 | Msa0630770:CDS | 45.0% | |
| !! | GCTAGAGCATTGTAGCGTTT+AGG | - | chr4_3:12858058-12858077 | Msa0630770:CDS | 45.0% |
| GTAGTCTATAGTTGGGCACT+TGG | - | chr4_3:12858144-12858163 | Msa0630770:CDS | 45.0% | |
| GGGGGGTTGTCAAATTATCT+AGG | - | chr4_3:12858264-12858283 | Msa0630770:intron | 45.0% | |
| GGACAGAGCCAAAAAAGCAA+AGG | - | chr4_3:12858689-12858708 | Msa0630770:intron | 45.0% | |
| TACAGCTTCTACAGAAGTCG+TGG | - | chr4_3:12858767-12858786 | Msa0630770:intron | 45.0% | |
| !! | GTGGTGGATACATCTACTTC+AGG | - | chr4_3:12858786-12858805 | Msa0630770:intron | 45.0% |
| ACATACATTGAGCCCACTGA+AGG | - | chr4_3:12858867-12858886 | Msa0630770:intron | 45.0% | |
| CATACATTGAGCCCACTGAA+GGG | - | chr4_3:12858868-12858887 | Msa0630770:intron | 45.0% | |
| ATACATTGAGCCCACTGAAG+GGG | - | chr4_3:12858869-12858888 | Msa0630770:intron | 45.0% | |
| AAGCGAACACCTATTCATCG+AGG | + | chr4_3:12859054-12859073 | None:intergenic | 45.0% | |
| !! | AATAATAAAATAAAAGAAAT+GGG | + | chr4_3:12856253-12856272 | None:intergenic | 5.0% |
| !! | TAATAATAAAATAAAAGAAA+TGG | + | chr4_3:12856254-12856273 | None:intergenic | 5.0% |
| GGTTGTTGGAGATGGTGAAG+GGG | + | chr4_3:12855409-12855428 | None:intergenic | 50.0% | |
| GGTTCAATTCCTGACGCATC+AGG | - | chr4_3:12855996-12856015 | Msa0630770:intron | 50.0% | |
| CAATTCCTGACGCATCAGGT+TGG | - | chr4_3:12856000-12856019 | Msa0630770:intron | 50.0% | |
| AGATGGTGAAGGGGAGAAAG+TGG | + | chr4_3:12856358-12856377 | None:intergenic | 50.0% | |
| GGTTGTTGGAGATGGTGAAG+GGG | + | chr4_3:12855409-12855428 | None:intergenic | 50.0% | |
| GGAGAACCTAGGAGAAGCAA+AGG | + | chr4_3:12856388-12856407 | None:intergenic | 50.0% | |
| CTTCCCAGCTGCAACAAAAG+GGG | - | chr4_3:12856462-12856481 | Msa0630770:intron | 50.0% | |
| ! | TCATATGTGTCGGTGTGTCC+AGG | - | chr4_3:12856956-12856975 | Msa0630770:intron | 50.0% |
| GCCAATTCAGTGAGACTGGT+TGG | - | chr4_3:12857083-12857102 | Msa0630770:intron | 50.0% | |
| AAACCAATCGGCAAACTGGC+CGG | - | chr4_3:12857456-12857475 | Msa0630770:intron | 50.0% | |
| GGTGAGCTCTTGAGTACAGT+TGG | - | chr4_3:12857775-12857794 | Msa0630770:intron | 50.0% | |
| CTATAGTTGGGCACTTGGGT+TGG | - | chr4_3:12858149-12858168 | Msa0630770:CDS | 50.0% | |
| AGCTTCTACAGAAGTCGTGG+TGG | - | chr4_3:12858770-12858789 | Msa0630770:intron | 50.0% | |
| AGATGGTGAAGGGGAGAGAG+TGG | + | chr4_3:12855400-12855419 | None:intergenic | 55.0% | |
| TGGTGAAGGGGAGAAAGTGG+TGG | + | chr4_3:12856355-12856374 | None:intergenic | 55.0% | |
| ! | TTTCATTTGGGGTGGGTGGG+TGG | - | chr4_3:12856710-12856729 | Msa0630770:CDS | 55.0% |
| ! | TTCATTTGGGGTGGGTGGGT+GGG | - | chr4_3:12856711-12856730 | Msa0630770:CDS | 55.0% |
| GAGACCGGAAATCAAACCGG+TGG | - | chr4_3:12856846-12856865 | Msa0630770:intron | 55.0% | |
| ACCGGAAATCAAACCGGTGG+CGG | - | chr4_3:12856849-12856868 | Msa0630770:intron | 55.0% | |
| !! | ACCGCCACCGGTTTGATTTC+CGG | + | chr4_3:12856853-12856872 | None:intergenic | 55.0% |
| TGGCGGTGAGCTATGAAGCA+CGG | - | chr4_3:12856866-12856885 | Msa0630770:intron | 55.0% | |
| GAGCTATGAAGCACGGACAG+CGG | - | chr4_3:12856873-12856892 | Msa0630770:intron | 55.0% | |
| GATTAGGCGTGTACGACACC+TGG | + | chr4_3:12856977-12856996 | None:intergenic | 55.0% | |
| TGTCGTACACGCCTAATCCG+AGG | - | chr4_3:12856979-12856998 | Msa0630770:intron | 55.0% | |
| GAGCGCATTGAGTCGACACT+TGG | - | chr4_3:12857754-12857773 | Msa0630770:intron | 55.0% | |
| ! | AAGCTACAGAGGCACAACCG+CGG | - | chr4_3:12858727-12858746 | Msa0630770:intron | 55.0% |
| GTGGGATCTTCCCCTTCAGT+GGG | + | chr4_3:12858882-12858901 | None:intergenic | 55.0% | |
| TGTGGGATCTTCCCCTTCAG+TGG | + | chr4_3:12858883-12858902 | None:intergenic | 55.0% | |
| !! | TCCTGACGCATCAGGTTGGG+AGG | - | chr4_3:12856004-12856023 | Msa0630770:intron | 60.0% |
| !! | CCTGACGCATCAGGTTGGGA+GGG | - | chr4_3:12856005-12856024 | Msa0630770:intron | 60.0% |
| GCTTCATAGCTCACCGCCAC+CGG | + | chr4_3:12856865-12856884 | None:intergenic | 60.0% | |
| CACGGACAGCGGACACTACA+CGG | - | chr4_3:12856884-12856903 | Msa0630770:intron | 60.0% | |
| GAACCGGCCAGTTTGCCGAT+TGG | + | chr4_3:12857462-12857481 | None:intergenic | 60.0% | |
| AGCAGCGCGTGAAGCTACAG+AGG | - | chr4_3:12858716-12858735 | Msa0630770:intron | 60.0% | |
| ! | AGCTACAGAGGCACAACCGC+GGG | - | chr4_3:12858728-12858747 | Msa0630770:intron | 60.0% |
| CCCTCCCAACCTGATGCGTC+AGG | + | chr4_3:12856008-12856027 | None:intergenic | 65.0% | |
| TACCAGAGGGGGGTCCACCA+GGG | + | chr4_3:12856527-12856546 | None:intergenic | 65.0% | |
| TTACCAGAGGGGGGTCCACC+AGG | + | chr4_3:12856528-12856547 | None:intergenic | 65.0% | |
| ! | GCTACAGAGGCACAACCGCG+GGG | - | chr4_3:12858729-12858748 | Msa0630770:intron | 65.0% |
| GACTCGGAAACCAGTCCCCG+CGG | + | chr4_3:12858747-12858766 | None:intergenic | 65.0% | |
| GGGGGGTCCACCAGGGAAGA+AGG | + | chr4_3:12856520-12856539 | None:intergenic | 70.0% | |
| ! | TTCCCTGGTGGACCCCCCTC+TGG | - | chr4_3:12856522-12856541 | Msa0630770:intron | 70.0% |
| ! | AGAGGCACAACCGCGGGGAC+TGG | - | chr4_3:12858734-12858753 | Msa0630770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 12855390 | 12859128 | 12855390 | ID=Msa0630770;Name=Msa0630770 |
| chr4_3 | mRNA | 12855390 | 12859128 | 12855390 | ID=Msa0630770-mRNA-1;Parent=Msa0630770;Name=Msa0630770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.66|0.5|1|0.66|0.5|4|214|251 |
| chr4_3 | exon | 12855390 | 12855840 | 12855390 | ID=Msa0630770-mRNA-1:exon:3743;Parent=Msa0630770-mRNA-1 |
| chr4_3 | exon | 12856678 | 12856838 | 12856678 | ID=Msa0630770-mRNA-1:exon:3742;Parent=Msa0630770-mRNA-1 |
| chr4_3 | exon | 12857975 | 12858193 | 12857975 | ID=Msa0630770-mRNA-1:exon:3741;Parent=Msa0630770-mRNA-1 |
| chr4_3 | exon | 12858990 | 12859128 | 12858990 | ID=Msa0630770-mRNA-1:exon:3740;Parent=Msa0630770-mRNA-1 |
| chr4_3 | CDS | 12858990 | 12859128 | 12858990 | ID=Msa0630770-mRNA-1:cds;Parent=Msa0630770-mRNA-1 |
| chr4_3 | CDS | 12857975 | 12858193 | 12857975 | ID=Msa0630770-mRNA-1:cds;Parent=Msa0630770-mRNA-1 |
| chr4_3 | CDS | 12856678 | 12856838 | 12856678 | ID=Msa0630770-mRNA-1:cds;Parent=Msa0630770-mRNA-1 |
| chr4_3 | CDS | 12855604 | 12855840 | 12855604 | ID=Msa0630770-mRNA-1:cds;Parent=Msa0630770-mRNA-1 |
| chr4_3 | three_prime_UTR | 12855390 | 12855603 | 12855390 | ID=Msa0630770-mRNA-1:three_prime_utr;Parent=Msa0630770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
