AlfalfaGEDB | Msa1131680

M. sativa cultivar zhongmu-4 / Msa1131680

KEGG: -
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131680	KEH18741.1	99.157	593	3	1	1	593	1	591	0.0	1217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131680	sp\|Q9FPW6\|POB1_ARATH	74.161	596	102	6	5	593	7	557	0.0	883

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131680	G7ZYQ9	99.157	593	3	1	1	593	1	591	0.0	1217

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026780	Msa1131680	0.802735	4.872060e-49	-8.615850e-47
Msa0092480	Msa1131680	-0.819369	1.204430e-52	-8.615850e-47
Msa0190870	Msa1131680	0.801760	7.733171e-49	-8.615850e-47
Msa0237300	Msa1131680	0.807527	4.838900e-50	-8.615850e-47
Msa0238950	Msa1131680	0.812201	4.775681e-51	-8.615850e-47
Msa0249660	Msa1131680	-0.800032	1.742965e-48	-8.615850e-47
Msa0274720	Msa1131680	0.816493	5.374445e-52	-8.615850e-47
Msa0315520	Msa1131680	0.820724	5.896844e-53	-8.615850e-47
Msa0336540	Msa1131680	0.800017	1.755336e-48	-8.615850e-47
Msa0439960	Msa1131680	0.817783	2.756816e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1131680	MtrunA17_Chr8g0347801	92.411	593	3	2	1	593	1	551	0.0	1095
Msa1131680	MtrunA17_Chr4g0046761	61.224	147	54	2	163	309	39	182	1.69e-48	167
Msa1131680	MtrunA17_Chr4g0046771	74.194	62	16	0	441	502	28	89	1.18e-27	106
Msa1131680	MtrunA17_Chr4g0046781	69.643	56	17	0	513	568	1	56	3.41e-22	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1131680	AT3G61600.1	74.161	596	102	6	5	593	7	557	883
Msa1131680	AT3G61600.2	74.161	596	102	6	5	593	7	557	883
Msa1131680	AT2G46260.1	73.534	597	104	8	5	593	6	556	866
Msa1131680	AT4G01160.2	55.113	577	197	10	24	592	4	526	578
Msa1131680	AT4G01160.1	54.861	576	178	9	24	592	4	504	576

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Find 186 sgRNAs with CRISPR-Local

Find 680 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACCAACTTGTAGGC+TGG	0.554311	7_3:-84242959	None:intergenic
AAACGACGGCTCGAGCAAGC+AGG	0.559982	7_3:-84242130	None:intergenic
AAAGGCAATTACACATTCAC+AGG	0.562583	7_3:+84242469	Msa1131680:CDS
AAAGTTCTTTCCATTGCTTT+GGG	0.394503	7_3:+84242347	Msa1131680:CDS
AAATGTTAACATAGGTGATG+AGG	0.675883	7_3:+84240622	Msa1131680:CDS
AAATGTTAACCTAGGTGATG+AGG	0.670184	7_3:+84240502	Msa1131680:intron
AAATTAGAGAGACGGAGAAG+AGG	0.544119	7_3:-84239116	None:intergenic
AACATGCCCAAGGGCAATGA+AGG	0.472386	7_3:+84243035	Msa1131680:three_prime_UTR
AAGTGGGCTAGACACCAGTA+CGG	0.677973	7_3:+84241908	Msa1131680:CDS
AATTAAGATAATACCAGAAG+GGG	0.600741	7_3:-84240131	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATTTCCAACCTTATCTT+AGG	+	chr7_3:84239080-84239099	Msa1131680:five_prime_UTR	30.0%
CAATTTCCAACCTTATCTTA+GGG	+	chr7_3:84239081-84239100	Msa1131680:five_prime_UTR	30.0%
AAAAAACCCTAAGATAAGGT+TGG	-	chr7_3:84239090-84239109	None:intergenic	30.0%
ATTGAAAGCAAATCCGAAAT+CGG	-	chr7_3:84239235-84239254	None:intergenic	30.0%
TGAAGAAAAAATTGGTTGGA+AGG	+	chr7_3:84239716-84239735	Msa1131680:intron	30.0%
GAAGAAAAAATTGGTTGGAA+GGG	+	chr7_3:84239717-84239736	Msa1131680:intron	30.0%
CAAAGTTACAGAAAAAAGCT+TGG	+	chr7_3:84239870-84239889	Msa1131680:intron	30.0%
ATGTTGGATAATGTTTGTGT+TGG	+	chr7_3:84239939-84239958	Msa1131680:intron	30.0%
CGTTGTAACCTGATATTATA+TGG	+	chr7_3:84239986-84240005	Msa1131680:intron	30.0%
ACAGAAGACCATATAATATC+AGG	-	chr7_3:84239997-84240016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	84238951	84243054	84238951	ID=Msa1131680;Name=Msa1131680
chr7_3	mRNA	84238951	84243054	84238951	ID=Msa1131680-mRNA-1;Parent=Msa1131680;Name=Msa1131680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=199\|0.6\|0.66\|1\|1\|1\|6\|439\|593
chr7_3	exon	84238951	84239399	84238951	ID=Msa1131680-mRNA-1:exon:25065;Parent=Msa1131680-mRNA-1
chr7_3	exon	84240023	84240139	84240023	ID=Msa1131680-mRNA-1:exon:25066;Parent=Msa1131680-mRNA-1
chr7_3	exon	84240516	84240766	84240516	ID=Msa1131680-mRNA-1:exon:25067;Parent=Msa1131680-mRNA-1
chr7_3	exon	84240857	84240920	84240857	ID=Msa1131680-mRNA-1:exon:25068;Parent=Msa1131680-mRNA-1
chr7_3	exon	84241021	84241306	84241021	ID=Msa1131680-mRNA-1:exon:25069;Parent=Msa1131680-mRNA-1
chr7_3	exon	84241802	84243054	84241802	ID=Msa1131680-mRNA-1:exon:25070;Parent=Msa1131680-mRNA-1
chr7_3	five_prime_UTR	84238951	84239149	84238951	ID=Msa1131680-mRNA-1:five_prime_utr;Parent=Msa1131680-mRNA-1
chr7_3	CDS	84239150	84239399	84239150	ID=Msa1131680-mRNA-1:cds;Parent=Msa1131680-mRNA-1
chr7_3	CDS	84240023	84240139	84240023	ID=Msa1131680-mRNA-1:cds;Parent=Msa1131680-mRNA-1
chr7_3	CDS	84240516	84240766	84240516	ID=Msa1131680-mRNA-1:cds;Parent=Msa1131680-mRNA-1
chr7_3	CDS	84240857	84240920	84240857	ID=Msa1131680-mRNA-1:cds;Parent=Msa1131680-mRNA-1
chr7_3	CDS	84241021	84241306	84241021	ID=Msa1131680-mRNA-1:cds;Parent=Msa1131680-mRNA-1
chr7_3	CDS	84241802	84242615	84241802	ID=Msa1131680-mRNA-1:cds;Parent=Msa1131680-mRNA-1
chr7_3	three_prime_UTR	84242616	84243054	84242616	ID=Msa1131680-mRNA-1:three_prime_utr;Parent=Msa1131680-mRNA-1

Gene Sequence

>Msa1131680

ATGAAGGATTTGAATTCCGATCTGTTTGATCCGGTTACGGTGATGGAATCTGAATGGGCTCACGGTGGTTCTAGCTCCGACGCCGATTTCGGATTTGCTTTCAATGATAGTAATTTCTCTGATAGGGTTTTGAGGATTGAAATCATGGCCGATCCAGTTGATCCTCAACCTGATTCTGAAAATTGTACCTCTATTGCTGATTGGGCGAGGCATCGGAAGAGGAGACGTGAAGATATCAAGAAAGAAAACGTTGGGGATCTGCCAGATGAGCAGATTTTGAATGGGAACCAACCTGACATGGATGATTGTGTGGCTTCTGAAAATCAGGAGGAAGAAGTTGTTGCAATGGTTGAAGAATCCCCTTCTGGTGATGAGGCTGTAAATGACTTAGGTGATGAGGCTGTAAATGACTTAGGTGATGAGGCTGTTCATGACATGTCTGATTTTGAAAATGTGAACACGTCTGATTTTGAAAATGTTAACATAGGTGATGAGGCTGTAAATGACAATGATGAACCCAACCTGGGCATGGATTACTCTGAACCTGCAGTTGTTAGAGTTAAAACCCTACATATCAGTTCTCCGATCTTGGCTGCTAAAAGCCCTTTCTTCTATAAGCTTTTTTCGAATGGGATGAGGGAATCGGAACTGAGACATGTCACCCTCAGAATTAATGCTTCTGAAGAAGCTGCTCTCATGGAGCTACTAAACTTTATGTACAGTAACACATTGAGCATTAAGACAGCACCTGGTTTGCTGGATGTTTTGATGGCTGCCGATAAATTTGAAGTTGCTTCATGCATGAGATATTGTAGTCGGTTGTTGCGAAATATGCAAATGACACCTGAATCTGCATTGCTTTACCTGGAGCTGCCATCTAGTGTCTTAATGGCTGATGCAGTTCAACCACTAACTGATGCGGCAAAGCAGTATCTTGCTAGCCGATACAAGGATATAACCAAGCAAGTGTTCCAGGACGAGGTTATGAACTTGCCCCTAGCCGGAGTAGAGGCAATATTATCTAGTGATGATCTCCAGGTTGCATCAGAAGATGCTGTTTATGACTTTGTGCTGAAGTGGGCTAGACACCAGTACGGCAATCTGGAAGATAGGCGAGAAGTCCTAGGCTCGCGGCTTGCACGATTTATCCGCTTCCCTCATATGACCTGCCGAAAGCTTAAGAAGGTCTTAACCTGTAGTGACTTTGAACATGATGTTTCATCCAAGCTTGTCCTTGAGGCTCTATTTTTCAAGGCAGAGGTTCCACATCGCCAACGGTCACTGGCAGCTGAAGAGCCTGCTTGCTCGAGCCGTCGTTTCTTGGAGAGGGCATACAAATATCGTCCTGTCAAGGTGGTTGAATTTGAACTTCCACGCCAGCAGTGTGTAGTATATTTGGATCTAAAGCGGGAGGAGTGTTCCAATTTGTTCCCGTCTGGCCGGGTTTATTCTCAGGCATTTCACTTGGGTGGACAAGGGTTTTTTCTGTCAGCACATTGTAACATGGATCAACAAAGTTCTTTCCATTGCTTTGGGCTGTTTTTGGGAATGCAGGAAAAGGGATCAGTGAGCTTCACTGTGGACTATGAATTTGCGGCAAGGTCAAGACCAACAGAGGAGTTTGTTAGCAAATACAAAGGCAATTACACATTCACAGGTGGCAAGGCTGTTGGCTACAGAAACTTGTTTGCGATTCCATGGACTTCGTTCATGGCTGAGGATTGTCTTTACTTCATTAATGGCGTTCTGCACCTAAGGGCCGAGCTCACCATCAGACAGTGA

Protein sequence

>Msa1131680

MKDLNSDLFDPVTVMESEWAHGGSSSDADFGFAFNDSNFSDRVLRIEIMADPVDPQPDSENCTSIADWARHRKRRREDIKKENVGDLPDEQILNGNQPDMDDCVASENQEEEVVAMVEESPSGDEAVNDLGDEAVNDLGDEAVHDMSDFENVNTSDFENVNIGDEAVNDNDEPNLGMDYSEPAVVRVKTLHISSPILAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNMQMTPESALLYLELPSSVLMADAVQPLTDAAKQYLASRYKDITKQVFQDEVMNLPLAGVEAILSSDDLQVASEDAVYDFVLKWARHQYGNLEDRREVLGSRLARFIRFPHMTCRKLKKVLTCSDFEHDVSSKLVLEALFFKAEVPHRQRSLAAEEPACSSRRFLERAYKYRPVKVVEFELPRQQCVVYLDLKREECSNLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFTVDYEFAARSRPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDCLYFINGVLHLRAELTIRQ*