AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249700 MtrunA17_Chr2g0304931 63.415 123 32 4 6 120 211 328 1.33e-41 144
Msa0249700 MtrunA17_Chr2g0304931 75.806 62 14 1 97 157 39 100 7.01e-25 99.4
Msa0249700 MtrunA17_Chr3g0094811 68.254 63 20 0 95 157 30 92 8.15e-25 99.4
Msa0249700 MtrunA17_Chr3g0094811 43.548 124 59 4 6 121 201 321 8.48e-23 93.6
Msa0249700 MtrunA17_Chr1g0165811 62.687 67 25 0 91 157 26 92 3.16e-24 95.1
Msa0249700 MtrunA17_Chr8g0385871 57.746 71 25 1 87 157 30 95 9.02e-22 90.9
Msa0249700 MtrunA17_Chr8g0385871 46.429 84 40 2 6 84 207 290 1.72e-17 78.6
Msa0249700 MtrunA17_Chr7g0229611 50.575 87 41 2 71 157 2 86 1.01e-21 84.3
Msa0249700 MtrunA17_Chr1g0204191 52.778 72 34 0 86 157 82 153 2.25e-20 87.0
Msa0249700 MtrunA17_Chr1g0204191 38.554 83 46 2 6 83 238 320 5.73e-13 65.9
Msa0249700 MtrunA17_Chr3g0131731 51.351 74 35 1 85 157 20 93 3.40e-20 86.3
Msa0249700 MtrunA17_Chr3g0131731 36.719 128 64 6 6 121 206 328 2.74e-17 78.2
Msa0249700 MtrunA17_Chr1g0153931 60.938 64 24 1 95 157 75 138 4.90e-20 84.0
Msa0249700 MtrunA17_Chr7g0229621 58.730 63 25 1 95 157 25 86 4.98e-20 80.1
Msa0249700 MtrunA17_Chr7g0221551 40.496 121 65 4 6 120 204 323 5.02e-20 85.9
Msa0249700 MtrunA17_Chr7g0221551 55.882 68 29 1 91 157 25 92 1.86e-19 84.3
Msa0249700 MtrunA17_Chr4g0047861 55.714 70 30 1 96 164 53 122 2.86e-19 84.0
Msa0249700 MtrunA17_Chr3g0126051 62.903 62 23 0 96 157 34 95 4.52e-19 83.2
Msa0249700 MtrunA17_Chr7g0229631 48.276 87 43 2 71 157 10 94 5.28e-19 78.6
Msa0249700 MtrunA17_Chr1g0153941 54.930 71 31 1 95 164 77 147 6.57e-19 82.8
Msa0249700 MtrunA17_Chr2g0281621 53.623 69 32 0 96 164 36 104 1.27e-18 82.0
Msa0249700 MtrunA17_Chr5g0431301 59.677 62 25 0 96 157 30 91 1.52e-18 81.6
Msa0249700 MtrunA17_Chr1g0153881 53.623 69 31 1 95 162 89 157 3.42e-18 80.9
Msa0249700 MtrunA17_Chr3g0118891 57.812 64 26 1 95 157 77 140 4.33e-18 80.5
Msa0249700 MtrunA17_Chr3g0118881 57.812 64 26 1 95 157 77 140 7.43e-18 79.7
Msa0249700 MtrunA17_Chr3g0118841 56.250 64 27 1 95 157 78 141 1.41e-17 79.0
Msa0249700 MtrunA17_Chr3g0118851 56.250 64 27 1 95 157 77 140 1.74e-17 78.6
Msa0249700 MtrunA17_Chr7g0219051 45.714 70 38 0 95 164 35 104 2.63e-17 78.2
Msa0249700 MtrunA17_Chr3g0126031 59.677 62 25 0 96 157 29 90 3.24e-17 77.8
Msa0249700 MtrunA17_Chr4g0038311 47.143 70 37 0 95 164 34 103 4.10e-17 77.4
Msa0249700 MtrunA17_Chr3g0118831 56.250 64 27 1 95 157 77 140 4.91e-17 77.4
Msa0249700 MtrunA17_Chr3g0118861 54.688 64 28 1 95 157 75 138 1.65e-16 75.9
Msa0249700 MtrunA17_Chr3g0090331 38.835 103 58 3 67 164 41 143 9.30e-16 73.6
Msa0249700 MtrunA17_Chr4g0068841 41.053 95 48 3 64 157 14 101 9.66e-16 73.6
Msa0249700 MtrunA17_Chr7g0229651 35.246 122 66 5 8 120 1 118 3.82e-15 69.7
Msa0249700 MtrunA17_Chr1g0199991 46.479 71 35 2 95 162 32 102 1.12e-14 70.5
Msa0249700 MtrunA17_Chr4g0020241 37.778 90 54 1 75 162 51 140 1.54e-14 70.1
Msa0249700 MtrunA17_Chr4g0068861 39.785 93 46 3 66 157 64 147 2.20e-14 69.7
Msa0249700 MtrunA17_Chr1g0199971 47.887 71 34 2 95 162 32 102 2.20e-14 69.7
Msa0249700 MtrunA17_Chr2g0281631 56.604 53 22 1 96 147 45 97 6.19e-14 64.7
Msa0249700 MtrunA17_Chr2g0309521 43.590 78 38 3 89 164 37 110 2.16e-13 67.0
Msa0249700 MtrunA17_Chr2g0309511 42.308 78 39 3 89 164 37 110 8.69e-13 65.1
Msa0249700 MtrunA17_Chr2g0318911 38.636 88 51 3 80 164 24 111 2.36e-12 63.9
Msa0249700 MtrunA17_Chr2g0309541 43.478 69 37 2 98 164 41 109 2.85e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249700 AT1G28110.1 59.091 66 27 0 92 157 28 93 6.85e-22 91.7
Msa0249700 AT1G28110.1 41.803 122 64 4 6 121 205 325 1.69e-20 87.4
Msa0249700 AT1G28110.2 59.091 66 27 0 92 157 28 93 6.85e-22 91.7
Msa0249700 AT1G28110.2 41.803 122 64 4 6 121 205 325 1.69e-20 87.4
Msa0249700 AT2G33530.1 60.317 63 25 0 95 157 33 95 6.75e-21 88.6
Msa0249700 AT2G33530.1 39.837 123 67 4 6 121 207 329 4.53e-20 86.3
Msa0249700 AT1G61130.1 53.623 69 32 0 96 164 32 100 2.01e-18 81.6
Msa0249700 AT5G23210.3 48.571 70 36 0 95 164 51 120 2.31e-18 81.6
Msa0249700 AT5G23210.1 48.571 70 36 0 95 164 51 120 2.44e-18 81.6
Msa0249700 AT5G42230.1 61.290 62 24 0 96 157 29 90 1.72e-17 79.0
Msa0249700 AT5G42230.2 61.290 62 24 0 96 157 29 90 1.72e-17 79.0
Msa0249700 AT3G02110.1 47.143 70 37 0 95 164 37 106 2.84e-17 78.6
Msa0249700 AT1G11080.2 54.286 70 31 1 96 164 50 119 5.68e-17 77.8
Msa0249700 AT1G11080.1 54.286 70 31 1 96 164 50 119 6.18e-17 77.4
Msa0249700 AT4G15100.1 50.725 69 34 0 96 164 45 113 8.07e-17 77.0
Msa0249700 AT5G42240.1 58.065 62 26 0 96 157 33 94 1.01e-16 77.0
Msa0249700 AT1G43780.1 60.317 63 24 1 96 157 37 99 1.18e-16 76.6
Msa0249700 AT2G12480.4 54.839 62 28 0 96 157 32 93 5.98e-16 74.7
Msa0249700 AT2G12480.1 54.839 62 28 0 96 157 32 93 6.08e-16 74.7
Msa0249700 AT2G12480.2 54.839 62 28 0 96 157 32 93 6.15e-16 74.7
Msa0249700 AT3G63470.1 39.423 104 62 1 65 167 50 153 6.63e-16 74.7
Msa0249700 AT2G12480.3 54.839 62 28 0 96 157 32 93 7.08e-16 74.3
Msa0249700 AT2G24000.2 43.662 71 39 1 95 164 30 100 1.92e-15 73.2
Msa0249700 AT2G24000.1 43.662 71 39 1 95 164 30 100 2.22e-15 73.2
Msa0249700 AT3G07990.1 49.315 73 34 2 95 164 33 105 2.32e-15 72.8
Msa0249700 AT3G56540.1 53.448 58 27 0 96 153 80 137 4.20e-15 71.2
Msa0249700 AT2G24010.1 43.284 67 38 0 96 162 31 97 4.71e-15 72.0
Msa0249700 AT4G30610.1 42.254 71 40 1 95 164 32 102 1.79e-14 70.5
Msa0249700 AT5G08260.1 47.297 74 37 2 96 167 39 112 2.05e-14 70.1
Msa0249700 AT2G35770.1 42.254 71 40 1 95 164 37 107 4.90e-14 69.3
Msa0249700 AT3G52020.1 56.364 55 24 0 99 153 83 137 8.87e-14 68.6
Msa0249700 AT2G05850.1 47.143 70 36 1 99 167 67 136 3.54e-13 66.6
Msa0249700 AT2G35780.1 45.205 73 37 2 95 164 29 101 3.77e-13 66.6
Msa0249700 AT3G17180.2 39.726 73 42 2 87 157 30 102 1.48e-12 64.7
Msa0249700 AT3G17180.1 39.726 73 42 2 87 157 30 102 1.67e-12 64.7

Find 59 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTGGTCACATGGCCTTAT+AGG 0.173160 2_2:+37101157 Msa0249700:CDS
AAAATCACTCGGTTGAAATT+AGG 0.196260 2_2:-37102525 None:intergenic
TTGTTCCTGCCGTTTGAATA+TGG 0.248339 2_2:-37101212 None:intergenic
CGTGGTCACATGGCCTTATA+GGG 0.259428 2_2:+37101158 Msa0249700:CDS
GCAGATTGGGAATTCTCTTT+TGG 0.280950 2_2:+37101105 Msa0249700:intron
TATGGAGAAATTGCAACTTT+TGG 0.341716 2_2:-37101194 None:intergenic
AAAAGAAGCATACTTGGTTA+TGG 0.347326 2_2:-37102557 None:intergenic
TACTGATAACTGGAATCTTT+AGG 0.349143 2_2:+37102390 Msa0249700:three_prime_UTR
TACCGGTCAAAATCTACTTT+TGG 0.356029 2_2:-37102045 None:intergenic
TTCAAACGGCAGGAACAAAT+TGG 0.362605 2_2:+37101217 Msa0249700:CDS
GTATGCAAATTACATTACTA+TGG 0.372719 2_2:+37102065 Msa0249700:CDS
CAGGAGTGAGGAATACATAC+TGG 0.380995 2_2:-37100009 None:intergenic
GGTTGCTCTTCCGTTGGCCT+AGG 0.383442 2_2:+37102281 Msa0249700:CDS
ACATTGAAGCTAAGCTAGAT+AGG 0.384366 2_2:-37102497 None:intergenic
GGAGCACCAAGGAGCGTTGC+TGG 0.387042 2_2:+37102302 Msa0249700:CDS
TGCTAGAATGTACTGATAAC+TGG 0.395632 2_2:+37102380 Msa0249700:three_prime_UTR
TGAATGTGGAATCCCCTATA+AGG 0.396885 2_2:-37101171 None:intergenic
CTTTAGGTTCATAAATATAG+TGG 0.414606 2_2:+37102406 Msa0249700:three_prime_UTR
TGCAGATAGGCTGCATCATC+CGG 0.416393 2_2:+37101433 Msa0249700:CDS
TCTTCCACTCTCTTATAACA+TGG 0.454103 2_2:+37099867 Msa0249700:five_prime_UTR
GGGCTTGGTTGCTCTTCCGT+TGG 0.455046 2_2:+37102275 Msa0249700:intron
AGATGGAGGGTGGGAGAGAG+TGG 0.463344 2_2:-37099985 None:intergenic
TCCTTTATGAACAGACTAGC+AGG 0.475755 2_2:+37101360 Msa0249700:intron
TAGATTTCCTACATGCAGAT+AGG 0.491769 2_2:+37101420 Msa0249700:CDS
TCATAACCAGCAACGCTCCT+TGG 0.495051 2_2:-37102308 None:intergenic
CTAAGATTATTTGTAAATGT+CGG 0.511902 2_2:+37102436 Msa0249700:three_prime_UTR
CTTCCACTCTCTTATAACAT+GGG 0.513545 2_2:+37099868 Msa0249700:five_prime_UTR
TATGTATTCCTCACTCCTGC+AGG 0.521539 2_2:+37100013 Msa0249700:exon
CAACGCTCCTTGGTGCTCCT+AGG 0.521898 2_2:-37102298 None:intergenic
GCAATTTCTCCATATTCAAA+CGG 0.527474 2_2:+37101203 Msa0249700:CDS
TTTCTCCATATTCAAACGGC+AGG 0.530406 2_2:+37101207 Msa0249700:CDS
TGAAATGAGAAGAAAATGAG+AGG 0.535824 2_2:-37099962 None:intergenic
CGATCCAGCTTCAAAACCAT+TGG 0.537499 2_2:+37102137 Msa0249700:CDS
TAGTAATGTAATTTGCATAC+CGG 0.545218 2_2:-37102062 None:intergenic
CCATTCAACAAAAGCACCAA+TGG 0.551134 2_2:-37102153 None:intergenic
TGAGAAGAAAATGAGAGGGT+AGG 0.553508 2_2:-37099957 None:intergenic
ACATACTGGGAGATGGAGGG+TGG 0.556489 2_2:-37099995 None:intergenic
GAGGAATACATACTGGGAGA+TGG 0.562747 2_2:-37100002 None:intergenic
CCTTGGTGCTCCTAGGCCAA+CGG 0.580344 2_2:-37102291 None:intergenic
AGACCCATGTTATAAGAGAG+TGG 0.587536 2_2:-37099871 None:intergenic
GCTGAATATCCGTGGTCACA+TGG 0.587997 2_2:+37101148 Msa0249700:CDS
TGTATATACCTGCAGGAGTG+AGG 0.597606 2_2:-37100021 None:intergenic
GAAATGAGAAGAAAATGAGA+GGG 0.598159 2_2:-37099961 None:intergenic
ATCAGTACATTCTAGCAGCA+AGG 0.600578 2_2:-37102374 None:intergenic
GAATACATACTGGGAGATGG+AGG 0.606046 2_2:-37099999 None:intergenic
GTCATACACATCAGAGCAGA+TGG 0.608333 2_2:-37101251 None:intergenic
CATACTGGGAGATGGAGGGT+GGG 0.609704 2_2:-37099994 None:intergenic
AATACATACTGGGAGATGGA+GGG 0.620432 2_2:-37099998 None:intergenic
CACATCGGAGGTTACATCGA+AGG 0.628243 2_2:-37101393 None:intergenic
GATGCAGCCTATCTGCATGT+AGG 0.628727 2_2:-37101427 None:intergenic
GTGGTCACATGGCCTTATAG+GGG 0.629985 2_2:+37101159 Msa0249700:CDS
AGGAGTGAGGAATACATACT+GGG 0.639247 2_2:-37100008 None:intergenic
GGTTTGCCATGAAAATCACT+CGG 0.641055 2_2:-37102536 None:intergenic
CCTATAAGGCCATGTGACCA+CGG 0.645994 2_2:-37101157 None:intergenic
TAGGAAATCTAGACACACAT+CGG 0.671427 2_2:-37101408 None:intergenic
ATTATAGAGCTGAATATCCG+TGG 0.679132 2_2:+37101140 Msa0249700:CDS
GAAATCTAGACACACATCGG+AGG 0.703734 2_2:-37101405 None:intergenic
CCGTTGGCCTAGGAGCACCA+AGG 0.726967 2_2:+37102291 Msa0249700:CDS
GTATGACGAAGTCACAACAT+CGG 0.746373 2_2:+37101267 Msa0249700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTTTT+AGG + chr2_2:37100466-37100485 Msa0249700:intron 0.0%
!!! TTTTTATTTTTATTTTTTTA+GGG + chr2_2:37100467-37100486 Msa0249700:intron 0.0%
!! TAATAAATTTATAATAAATT+TGG - chr2_2:37100799-37100818 None:intergenic 0.0%
!!! GATATTTTAATTTCAAAATA+AGG + chr2_2:37100277-37100296 Msa0249700:intron 10.0%
!! AAATTTATAATAAATTTGGT+GGG - chr2_2:37100795-37100814 None:intergenic 10.0%
!! TAAATTTATAATAAATTTGG+TGG - chr2_2:37100796-37100815 None:intergenic 10.0%
!! TATTTGAAAGAAAAAAAATA+AGG + chr2_2:37100855-37100874 Msa0249700:intron 10.0%
!! ATTTGAAAGAAAAAAAATAA+GGG + chr2_2:37100856-37100875 Msa0249700:intron 10.0%
!! TCAATTATTTATGTTATAAA+AGG + chr2_2:37101683-37101702 Msa0249700:intron 10.0%
!! CAATTATTTATGTTATAAAA+GGG + chr2_2:37101684-37101703 Msa0249700:intron 10.0%
!! AATTATTTATGTTATAAAAG+GGG + chr2_2:37101685-37101704 Msa0249700:intron 10.0%
!!! GATTTTTTTACAATCAAAAA+GGG - chr2_2:37100568-37100587 None:intergenic 15.0%
!!! TGATTTTTTTACAATCAAAA+AGG - chr2_2:37100569-37100588 None:intergenic 15.0%
!! TAATGTCAGATTATATATAT+AGG + chr2_2:37100706-37100725 Msa0249700:intron 15.0%
!! TATGCAAATGATAATATATT+CGG + chr2_2:37102191-37102210 Msa0249700:intron 15.0%
!! TAAAAAAATCACGAAATTTG+CGG + chr2_2:37100578-37100597 Msa0249700:intron 20.0%
!! ATAATTGAATAGTAAACGTA+CGG - chr2_2:37101671-37101690 None:intergenic 20.0%
!!! TCTAGATTTTTTTTTTTCTC+TGG + chr2_2:37101743-37101762 Msa0249700:intron 20.0%
!!! ACATTTTATATCCTTCAAAT+TGG - chr2_2:37101770-37101789 None:intergenic 20.0%
!! ATTAGCATTAAATACAAAAC+TGG - chr2_2:37101877-37101896 None:intergenic 20.0%
!!! AATAGAAAAGTTTTCTATCT+TGG - chr2_2:37102098-37102117 None:intergenic 20.0%
!!! TTTTTTTTTTGGGATTTTGA+AGG + chr2_2:37102254-37102273 Msa0249700:intron 20.0%
!!! TTTTTTTTTGGGATTTTGAA+GGG + chr2_2:37102255-37102274 Msa0249700:intron 20.0%
!! CTAAGATTATTTGTAAATGT+CGG + chr2_2:37102436-37102455 Msa0249700:three_prime_UTR 20.0%
! TCTCTCAATGAACTAATTAA+CGG + chr2_2:37100056-37100075 Msa0249700:intron 25.0%
!! ACACTTGACAAATTTAAGAT+CGG - chr2_2:37100106-37100125 None:intergenic 25.0%
! ATCTTAAATTTGTCAAGTGT+TGG + chr2_2:37100106-37100125 Msa0249700:intron 25.0%
! TGATAATAATCCCTAACAAA+GGG + chr2_2:37100383-37100402 Msa0249700:intron 25.0%
! AATCAAAAAGGGAGAAATTA+AGG - chr2_2:37100557-37100576 None:intergenic 25.0%
! AACTAATGTGAAACAGTATA+GGG - chr2_2:37100637-37100656 None:intergenic 25.0%
! AAACTAATGTGAAACAGTAT+AGG - chr2_2:37100638-37100657 None:intergenic 25.0%
! ATATATGAACAGAAAACGAA+AGG - chr2_2:37101492-37101511 None:intergenic 25.0%
! GAATGCTAAATCAAAGATTA+AGG - chr2_2:37101530-37101549 None:intergenic 25.0%
!! TAATCTTTGATTTAGCATTC+TGG + chr2_2:37101530-37101549 Msa0249700:intron 25.0%
!! TATTCAAGTATTTTGCAATG+TGG - chr2_2:37101583-37101602 None:intergenic 25.0%
! TATTTATGTTATAAAAGGGG+TGG + chr2_2:37101688-37101707 Msa0249700:intron 25.0%
! AAATTACTGTTCTATTGAGA+TGG - chr2_2:37101813-37101832 None:intergenic 25.0%
! AATGAGTGTAAGTAACTATT+AGG - chr2_2:37101931-37101950 None:intergenic 25.0%
!! TAGTAATGTAATTTGCATAC+CGG - chr2_2:37102065-37102084 None:intergenic 25.0%
! GTATGCAAATTACATTACTA+TGG + chr2_2:37102065-37102084 Msa0249700:CDS 25.0%
!! CTTTAGGTTCATAAATATAG+TGG + chr2_2:37102406-37102425 Msa0249700:three_prime_UTR 25.0%
! CATTCATAGCATCTCATTTT+CGG + chr2_2:37099918-37099937 Msa0249700:five_prime_UTR 30.0%
GAAATGAGAAGAAAATGAGA+GGG - chr2_2:37099964-37099983 None:intergenic 30.0%
TGAAATGAGAAGAAAATGAG+AGG - chr2_2:37099965-37099984 None:intergenic 30.0%
!!! TAGTTGCTGTTTTAGTTTAG+AGG + chr2_2:37100133-37100152 Msa0249700:intron 30.0%
! TTGTTAGTCTAGAAATCAAG+TGG + chr2_2:37100177-37100196 Msa0249700:intron 30.0%
GTGATAATAATCCCTAACAA+AGG + chr2_2:37100382-37100401 Msa0249700:intron 30.0%
ATACACGTATGAAATTGCAA+AGG + chr2_2:37100424-37100443 Msa0249700:intron 30.0%
AAGGGAGAAATTAAGGAAAA+AGG - chr2_2:37100550-37100569 None:intergenic 30.0%
!! GAGCATCGTATTATGAATTT+TGG - chr2_2:37100606-37100625 None:intergenic 30.0%
! AAATTTGAAGTGATAGTCAC+AGG + chr2_2:37100880-37100899 Msa0249700:intron 30.0%
TGTGTTTACAATTGCAGATT+GGG + chr2_2:37101092-37101111 Msa0249700:intron 30.0%
!! TTCTCTTTTGGATTTTGACA+CGG + chr2_2:37101117-37101136 Msa0249700:CDS 30.0%
! TATGGAGAAATTGCAACTTT+TGG - chr2_2:37101197-37101216 None:intergenic 30.0%
GCAATTTCTCCATATTCAAA+CGG + chr2_2:37101203-37101222 Msa0249700:CDS 30.0%
AATGCATCAAGTGTATATAC+CGG - chr2_2:37101455-37101474 None:intergenic 30.0%
ACTGGACAAAATGAACTAAA+CGG - chr2_2:37101859-37101878 None:intergenic 30.0%
CTGTAACAGAAGAGAAATAT+TGG - chr2_2:37101901-37101920 None:intergenic 30.0%
ATAATCTTCAGAGACTAGTA+AGG + chr2_2:37102005-37102024 Msa0249700:intron 30.0%
! ACTTTTCTATTATTTCGTCG+AGG + chr2_2:37102107-37102126 Msa0249700:CDS 30.0%
TACTGATAACTGGAATCTTT+AGG + chr2_2:37102390-37102409 Msa0249700:three_prime_UTR 30.0%
AAAATCACTCGGTTGAAATT+AGG - chr2_2:37102528-37102547 None:intergenic 30.0%
TCTTCCACTCTCTTATAACA+TGG + chr2_2:37099867-37099886 Msa0249700:five_prime_UTR 35.0%
CTTCCACTCTCTTATAACAT+GGG + chr2_2:37099868-37099887 Msa0249700:five_prime_UTR 35.0%
TTAGTTCATTGAGAGAGAGT+GGG - chr2_2:37100052-37100071 None:intergenic 35.0%
ATTAGTTCATTGAGAGAGAG+TGG - chr2_2:37100053-37100072 None:intergenic 35.0%
GGTAAGGTAGCATTAATCAA+CGG - chr2_2:37100960-37100979 None:intergenic 35.0%
CAATCTGCAATTGTAAACAC+AGG - chr2_2:37101093-37101112 None:intergenic 35.0%
CTGTGTTTACAATTGCAGAT+TGG + chr2_2:37101091-37101110 Msa0249700:intron 35.0%
ATTATAGAGCTGAATATCCG+TGG + chr2_2:37101140-37101159 Msa0249700:CDS 35.0%
! ATTGCAACTTTTGGTGAATG+TGG - chr2_2:37101188-37101207 None:intergenic 35.0%
TAGGAAATCTAGACACACAT+CGG - chr2_2:37101411-37101430 None:intergenic 35.0%
TAGATTTCCTACATGCAGAT+AGG + chr2_2:37101420-37101439 Msa0249700:CDS 35.0%
GCTAAATCAAAGATTAAGGC+AGG - chr2_2:37101526-37101545 None:intergenic 35.0%
! TTAGCATTCTGGAAAGAAGA+TGG + chr2_2:37101541-37101560 Msa0249700:intron 35.0%
TGGAGTTTAGAAGAATACTG+TGG + chr2_2:37101708-37101727 Msa0249700:intron 35.0%
! TTTTCTCTGGTCCAATTTGA+AGG + chr2_2:37101756-37101775 Msa0249700:intron 35.0%
!! AAATCTACTTTTGGCTGATC+AGG - chr2_2:37102039-37102058 None:intergenic 35.0%
!! AGCCAAAAGTAGATTTTGAC+CGG + chr2_2:37102043-37102062 Msa0249700:CDS 35.0%
! TACCGGTCAAAATCTACTTT+TGG - chr2_2:37102048-37102067 None:intergenic 35.0%
TATATTCGGATGTAAACCAC+TGG + chr2_2:37102205-37102224 Msa0249700:intron 35.0%
! TGCTAGAATGTACTGATAAC+TGG + chr2_2:37102380-37102399 Msa0249700:three_prime_UTR 35.0%
ACATTGAAGCTAAGCTAGAT+AGG - chr2_2:37102500-37102519 None:intergenic 35.0%
! TTTCAACCGAGTGATTTTCA+TGG + chr2_2:37102530-37102549 Msa0249700:three_prime_UTR 35.0%
AGACCCATGTTATAAGAGAG+TGG - chr2_2:37099874-37099893 None:intergenic 40.0%
TGAGAAGAAAATGAGAGGGT+AGG - chr2_2:37099960-37099979 None:intergenic 40.0%
AATACATACTGGGAGATGGA+GGG - chr2_2:37100001-37100020 None:intergenic 40.0%
AGGAGTGAGGAATACATACT+GGG - chr2_2:37100011-37100030 None:intergenic 40.0%
CTGAAAGCTACCCTTTGTTA+GGG - chr2_2:37100396-37100415 None:intergenic 40.0%
ACTGAAAGCTACCCTTTGTT+AGG - chr2_2:37100397-37100416 None:intergenic 40.0%
TAACAAAGGGTAGCTTTCAG+TGG + chr2_2:37100396-37100415 Msa0249700:intron 40.0%
TTGAAGTGATAGTCACAGGT+AGG + chr2_2:37100884-37100903 Msa0249700:intron 40.0%
ATACCCTTCAGGTCAATGTT+GGG - chr2_2:37100988-37101007 None:intergenic 40.0%
AATACCCTTCAGGTCAATGT+TGG - chr2_2:37100989-37101008 None:intergenic 40.0%
! GCAGATTGGGAATTCTCTTT+TGG + chr2_2:37101105-37101124 Msa0249700:intron 40.0%
TGAATGTGGAATCCCCTATA+AGG - chr2_2:37101174-37101193 None:intergenic 40.0%
TTTCTCCATATTCAAACGGC+AGG + chr2_2:37101207-37101226 Msa0249700:CDS 40.0%
! TTGTTCCTGCCGTTTGAATA+TGG - chr2_2:37101215-37101234 None:intergenic 40.0%
TTCAAACGGCAGGAACAAAT+TGG + chr2_2:37101217-37101236 Msa0249700:CDS 40.0%
GTATGACGAAGTCACAACAT+CGG + chr2_2:37101267-37101286 Msa0249700:CDS 40.0%
TCCTTTATGAACAGACTAGC+AGG + chr2_2:37101360-37101379 Msa0249700:intron 40.0%
! ACCTGCTAGTCTGTTCATAA+AGG - chr2_2:37101364-37101383 None:intergenic 40.0%
CTCTTCACAACAACGTTGTA+GGG + chr2_2:37101621-37101640 Msa0249700:intron 40.0%
! ATAGTAAACGTACGGACTAC+AGG - chr2_2:37101663-37101682 None:intergenic 40.0%
!!! CAATGGTTTTGAAGCTGGAT+CGG - chr2_2:37102139-37102158 None:intergenic 40.0%
!! CCATTCAACAAAAGCACCAA+TGG - chr2_2:37102156-37102175 None:intergenic 40.0%
!! CCATTGGTGCTTTTGTTGAA+TGG + chr2_2:37102153-37102172 Msa0249700:CDS 40.0%
!! TTGGTGCTTTTGTTGAATGG+AGG + chr2_2:37102156-37102175 Msa0249700:CDS 40.0%
! GCTTTTGTTGAATGGAGGTA+AGG + chr2_2:37102161-37102180 Msa0249700:intron 40.0%
!!! TTTTGGGATTTTGAAGGGCT+TGG + chr2_2:37102260-37102279 Msa0249700:intron 40.0%
ATCAGTACATTCTAGCAGCA+AGG - chr2_2:37102377-37102396 None:intergenic 40.0%
GGTTTGCCATGAAAATCACT+CGG - chr2_2:37102539-37102558 None:intergenic 40.0%
GAATACATACTGGGAGATGG+AGG - chr2_2:37100002-37100021 None:intergenic 45.0%
GAGGAATACATACTGGGAGA+TGG - chr2_2:37100005-37100024 None:intergenic 45.0%
CAGGAGTGAGGAATACATAC+TGG - chr2_2:37100012-37100031 None:intergenic 45.0%
TATGTATTCCTCACTCCTGC+AGG + chr2_2:37100013-37100032 Msa0249700:exon 45.0%
TGTATATACCTGCAGGAGTG+AGG - chr2_2:37100024-37100043 None:intergenic 45.0%
AAGTGATAGTCACAGGTAGG+TGG + chr2_2:37100887-37100906 Msa0249700:intron 45.0%
! TTCAGGTCAATGTTGGGTTG+GGG - chr2_2:37100982-37101001 None:intergenic 45.0%
CTTCAGGTCAATGTTGGGTT+GGG - chr2_2:37100983-37101002 None:intergenic 45.0%
CAACCCAACATTGACCTGAA+GGG + chr2_2:37100982-37101001 Msa0249700:intron 45.0%
!! CATTGACCTGAAGGGTATTG+CGG + chr2_2:37100990-37101009 Msa0249700:intron 45.0%
GTCATACACATCAGAGCAGA+TGG - chr2_2:37101254-37101273 None:intergenic 45.0%
GAAATCTAGACACACATCGG+AGG - chr2_2:37101408-37101427 None:intergenic 45.0%
CGTTGTTGTGAAGAGCTTTG+TGG - chr2_2:37101616-37101635 None:intergenic 45.0%
GCTCTTCACAACAACGTTGT+AGG + chr2_2:37101620-37101639 Msa0249700:intron 45.0%
ACGTTGTAGGGATCTCACAT+TGG + chr2_2:37101633-37101652 Msa0249700:intron 45.0%
CGATCCAGCTTCAAAACCAT+TGG + chr2_2:37102137-37102156 Msa0249700:CDS 45.0%
!!! AGCACCAATGGTTTTGAAGC+TGG - chr2_2:37102144-37102163 None:intergenic 45.0%
! AGATCAGATCAAAGCACCAG+TGG - chr2_2:37102224-37102243 None:intergenic 45.0%
!! ATTAATTATTATTATTATTC+AGG + chr2_2:37100321-37100340 Msa0249700:intron 5.0%
!!! TTACTTTTTTTTTTTTTTTT+TGG + chr2_2:37102243-37102262 Msa0249700:intron 5.0%
!!! TACTTTTTTTTTTTTTTTTT+GGG + chr2_2:37102244-37102263 Msa0249700:intron 5.0%
! GGAGAGGTGTATATACCTGC+AGG - chr2_2:37100031-37100050 None:intergenic 50.0%
TCATTGAGAGAGAGTGGGAG+AGG - chr2_2:37100047-37100066 None:intergenic 50.0%
CAAAGGGTAGCTTTCAGTGG+TGG + chr2_2:37100399-37100418 Msa0249700:intron 50.0%
!! TCAATGTTGGGTTGGGGGTA+AGG - chr2_2:37100976-37100995 None:intergenic 50.0%
!! TCAGGTCAATGTTGGGTTGG+GGG - chr2_2:37100981-37101000 None:intergenic 50.0%
CCTTCAGGTCAATGTTGGGT+TGG - chr2_2:37100984-37101003 None:intergenic 50.0%
CCAACCCAACATTGACCTGA+AGG + chr2_2:37100981-37101000 Msa0249700:intron 50.0%
GCTGAATATCCGTGGTCACA+TGG + chr2_2:37101148-37101167 Msa0249700:CDS 50.0%
CCTATAAGGCCATGTGACCA+CGG - chr2_2:37101160-37101179 None:intergenic 50.0%
!! CGTGGTCACATGGCCTTATA+GGG + chr2_2:37101158-37101177 Msa0249700:CDS 50.0%
!! GTGGTCACATGGCCTTATAG+GGG + chr2_2:37101159-37101178 Msa0249700:CDS 50.0%
GACGAAGTCACAACATCGGT+TGG + chr2_2:37101271-37101290 Msa0249700:intron 50.0%
CACATCGGAGGTTACATCGA+AGG - chr2_2:37101396-37101415 None:intergenic 50.0%
GATGCAGCCTATCTGCATGT+AGG - chr2_2:37101430-37101449 None:intergenic 50.0%
TGCAGATAGGCTGCATCATC+CGG + chr2_2:37101433-37101452 Msa0249700:CDS 50.0%
TCATAACCAGCAACGCTCCT+TGG - chr2_2:37102311-37102330 None:intergenic 50.0%
CATACTGGGAGATGGAGGGT+GGG - chr2_2:37099997-37100016 None:intergenic 55.0%
ACATACTGGGAGATGGAGGG+TGG - chr2_2:37099998-37100017 None:intergenic 55.0%
!! GACCTGAAGGGTATTGCGGT+AGG + chr2_2:37100994-37101013 Msa0249700:intron 55.0%
CACCTACCGCAATACCCTTC+AGG - chr2_2:37100999-37101018 None:intergenic 55.0%
!! CCGTGGTCACATGGCCTTAT+AGG + chr2_2:37101157-37101176 Msa0249700:CDS 55.0%
AGATGGAGGGTGGGAGAGAG+TGG - chr2_2:37099988-37100007 None:intergenic 60.0%
! GGGCTTGGTTGCTCTTCCGT+TGG + chr2_2:37102275-37102294 Msa0249700:intron 60.0%
! GGTTGCTCTTCCGTTGGCCT+AGG + chr2_2:37102281-37102300 Msa0249700:CDS 60.0%
!! CCTTGGTGCTCCTAGGCCAA+CGG - chr2_2:37102294-37102313 None:intergenic 60.0%
!! CAACGCTCCTTGGTGCTCCT+AGG - chr2_2:37102301-37102320 None:intergenic 60.0%
!! CCGTTGGCCTAGGAGCACCA+AGG + chr2_2:37102291-37102310 Msa0249700:CDS 65.0%
!! GGAGCACCAAGGAGCGTTGC+TGG + chr2_2:37102302-37102321 Msa0249700:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 37099864 37102567 37099864 ID=Msa0249700;Name=Msa0249700
chr2_2 mRNA 37099864 37102567 37099864 ID=Msa0249700-mRNA-1;Parent=Msa0249700;Name=Msa0249700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=150|0.4|0.66|1|0.4|0.5|6|227|167
chr2_2 exon 37099864 37100034 37099864 ID=Msa0249700-mRNA-1:exon:11758;Parent=Msa0249700-mRNA-1
chr2_2 exon 37101109 37101288 37101109 ID=Msa0249700-mRNA-1:exon:11759;Parent=Msa0249700-mRNA-1
chr2_2 exon 37101374 37101454 37101374 ID=Msa0249700-mRNA-1:exon:11760;Parent=Msa0249700-mRNA-1
chr2_2 exon 37102016 37102021 37102016 ID=Msa0249700-mRNA-1:exon:11761;Parent=Msa0249700-mRNA-1
chr2_2 exon 37102027 37102177 37102027 ID=Msa0249700-mRNA-1:exon:11762;Parent=Msa0249700-mRNA-1
chr2_2 exon 37102276 37102567 37102276 ID=Msa0249700-mRNA-1:exon:11763;Parent=Msa0249700-mRNA-1
chr2_2 five_prime_UTR 37099864 37100013 37099864 ID=Msa0249700-mRNA-1:five_prime_utr;Parent=Msa0249700-mRNA-1
chr2_2 CDS 37100014 37100034 37100014 ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1
chr2_2 CDS 37101109 37101288 37101109 ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1
chr2_2 CDS 37101374 37101454 37101374 ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1
chr2_2 CDS 37102016 37102021 37102016 ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1
chr2_2 CDS 37102027 37102177 37102027 ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1
chr2_2 CDS 37102276 37102340 37102276 ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1
chr2_2 three_prime_UTR 37102341 37102567 37102341 ID=Msa0249700-mRNA-1:three_prime_utr;Parent=Msa0249700-mRNA-1
Gene Sequence

>Msa0249700

ATGTATTCCTCACTCCTGCAGATTGGGAATTCTCTTTTGGATTTTGACACGGATTATAGAGCTGAATATCCGTGGTCACATGGCCTTATAGGGGATTCCACATTCACCAAAAGTTGCAATTTCTCCATATTCAAACGGCAGGAACAAATTGGTAATATCAGTACCATCTGCTCTGATGTGTATGACGAAGTCACAACATCGACTAGCAGGTTCATTGATACCTTCGATGTAACCTCCGATGTGTGTCTAGATTTCCTACATGCAGATAGGCTGCATCATCCGAGACTAGTAACTTTACCTGATCAGCCAAAAGTAGATTTTGACCGGTATGCAAATTACATTACTATGGATGAAATCCAAGATAGAAAACTTTTCTATTATTTCGTCGAGGCAAAGACCGATCCAGCTTCAAAACCATTGGTGCTTTTGTTGAATGGAGGGCTTGGTTGCTCTTCCGTTGGCCTAGGAGCACCAAGGAGCGTTGCTGGTTATGATGATCATTAA

Protein sequence

>Msa0249700

MYSSLLQIGNSLLDFDTDYRAEYPWSHGLIGDSTFTKSCNFSIFKRQEQIGNISTICSDVYDEVTTSTSRFIDTFDVTSDVCLDFLHADRLHHPRLVTLPDQPKVDFDRYANYITMDEIQDRKLFYYFVEAKTDPASKPLVLLLNGGLGCSSVGLGAPRSVAGYDDH*