Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249700 | XP_013463810.1 | 63.415 | 123 | 32 | 4 | 6 | 120 | 211 | 328 | 1.45e-37 | 144 |
Msa0249700 | XP_013463810.1 | 75.806 | 62 | 14 | 1 | 97 | 157 | 39 | 100 | 7.62e-21 | 99.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249700 | sp|Q93Y09|SCP45_ARATH | 59.091 | 66 | 27 | 0 | 92 | 157 | 28 | 93 | 6.74e-21 | 91.7 |
Msa0249700 | sp|Q93Y09|SCP45_ARATH | 41.803 | 122 | 64 | 4 | 6 | 121 | 205 | 325 | 1.67e-19 | 87.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249700 | A0A072VI90 | 63.415 | 123 | 32 | 4 | 6 | 120 | 211 | 328 | 6.93e-38 | 144 |
Msa0249700 | A0A072VI90 | 75.806 | 62 | 14 | 1 | 97 | 157 | 39 | 100 | 3.64e-21 | 99.4 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0240780 | Msa0249700 | 0.806725 | 7.154155e-50 | -8.615850e-47 |
Msa0249700 | Msa0282170 | 0.803342 | 3.649077e-49 | -8.615850e-47 |
Msa0249700 | Msa0462590 | 0.803794 | 2.940825e-49 | -8.615850e-47 |
Msa0249700 | Msa1392420 | 0.841702 | 4.047206e-58 | -8.615850e-47 |
Msa0249700 | Msa1397970 | 0.800395 | 1.470794e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249700 | MtrunA17_Chr2g0304931 | 63.415 | 123 | 32 | 4 | 6 | 120 | 211 | 328 | 1.33e-41 | 144 |
Msa0249700 | MtrunA17_Chr2g0304931 | 75.806 | 62 | 14 | 1 | 97 | 157 | 39 | 100 | 7.01e-25 | 99.4 |
Msa0249700 | MtrunA17_Chr3g0094811 | 68.254 | 63 | 20 | 0 | 95 | 157 | 30 | 92 | 8.15e-25 | 99.4 |
Msa0249700 | MtrunA17_Chr3g0094811 | 43.548 | 124 | 59 | 4 | 6 | 121 | 201 | 321 | 8.48e-23 | 93.6 |
Msa0249700 | MtrunA17_Chr1g0165811 | 62.687 | 67 | 25 | 0 | 91 | 157 | 26 | 92 | 3.16e-24 | 95.1 |
Msa0249700 | MtrunA17_Chr8g0385871 | 57.746 | 71 | 25 | 1 | 87 | 157 | 30 | 95 | 9.02e-22 | 90.9 |
Msa0249700 | MtrunA17_Chr8g0385871 | 46.429 | 84 | 40 | 2 | 6 | 84 | 207 | 290 | 1.72e-17 | 78.6 |
Msa0249700 | MtrunA17_Chr7g0229611 | 50.575 | 87 | 41 | 2 | 71 | 157 | 2 | 86 | 1.01e-21 | 84.3 |
Msa0249700 | MtrunA17_Chr1g0204191 | 52.778 | 72 | 34 | 0 | 86 | 157 | 82 | 153 | 2.25e-20 | 87.0 |
Msa0249700 | MtrunA17_Chr1g0204191 | 38.554 | 83 | 46 | 2 | 6 | 83 | 238 | 320 | 5.73e-13 | 65.9 |
Msa0249700 | MtrunA17_Chr3g0131731 | 51.351 | 74 | 35 | 1 | 85 | 157 | 20 | 93 | 3.40e-20 | 86.3 |
Msa0249700 | MtrunA17_Chr3g0131731 | 36.719 | 128 | 64 | 6 | 6 | 121 | 206 | 328 | 2.74e-17 | 78.2 |
Msa0249700 | MtrunA17_Chr1g0153931 | 60.938 | 64 | 24 | 1 | 95 | 157 | 75 | 138 | 4.90e-20 | 84.0 |
Msa0249700 | MtrunA17_Chr7g0229621 | 58.730 | 63 | 25 | 1 | 95 | 157 | 25 | 86 | 4.98e-20 | 80.1 |
Msa0249700 | MtrunA17_Chr7g0221551 | 40.496 | 121 | 65 | 4 | 6 | 120 | 204 | 323 | 5.02e-20 | 85.9 |
Msa0249700 | MtrunA17_Chr7g0221551 | 55.882 | 68 | 29 | 1 | 91 | 157 | 25 | 92 | 1.86e-19 | 84.3 |
Msa0249700 | MtrunA17_Chr4g0047861 | 55.714 | 70 | 30 | 1 | 96 | 164 | 53 | 122 | 2.86e-19 | 84.0 |
Msa0249700 | MtrunA17_Chr3g0126051 | 62.903 | 62 | 23 | 0 | 96 | 157 | 34 | 95 | 4.52e-19 | 83.2 |
Msa0249700 | MtrunA17_Chr7g0229631 | 48.276 | 87 | 43 | 2 | 71 | 157 | 10 | 94 | 5.28e-19 | 78.6 |
Msa0249700 | MtrunA17_Chr1g0153941 | 54.930 | 71 | 31 | 1 | 95 | 164 | 77 | 147 | 6.57e-19 | 82.8 |
Msa0249700 | MtrunA17_Chr2g0281621 | 53.623 | 69 | 32 | 0 | 96 | 164 | 36 | 104 | 1.27e-18 | 82.0 |
Msa0249700 | MtrunA17_Chr5g0431301 | 59.677 | 62 | 25 | 0 | 96 | 157 | 30 | 91 | 1.52e-18 | 81.6 |
Msa0249700 | MtrunA17_Chr1g0153881 | 53.623 | 69 | 31 | 1 | 95 | 162 | 89 | 157 | 3.42e-18 | 80.9 |
Msa0249700 | MtrunA17_Chr3g0118891 | 57.812 | 64 | 26 | 1 | 95 | 157 | 77 | 140 | 4.33e-18 | 80.5 |
Msa0249700 | MtrunA17_Chr3g0118881 | 57.812 | 64 | 26 | 1 | 95 | 157 | 77 | 140 | 7.43e-18 | 79.7 |
Msa0249700 | MtrunA17_Chr3g0118841 | 56.250 | 64 | 27 | 1 | 95 | 157 | 78 | 141 | 1.41e-17 | 79.0 |
Msa0249700 | MtrunA17_Chr3g0118851 | 56.250 | 64 | 27 | 1 | 95 | 157 | 77 | 140 | 1.74e-17 | 78.6 |
Msa0249700 | MtrunA17_Chr7g0219051 | 45.714 | 70 | 38 | 0 | 95 | 164 | 35 | 104 | 2.63e-17 | 78.2 |
Msa0249700 | MtrunA17_Chr3g0126031 | 59.677 | 62 | 25 | 0 | 96 | 157 | 29 | 90 | 3.24e-17 | 77.8 |
Msa0249700 | MtrunA17_Chr4g0038311 | 47.143 | 70 | 37 | 0 | 95 | 164 | 34 | 103 | 4.10e-17 | 77.4 |
Msa0249700 | MtrunA17_Chr3g0118831 | 56.250 | 64 | 27 | 1 | 95 | 157 | 77 | 140 | 4.91e-17 | 77.4 |
Msa0249700 | MtrunA17_Chr3g0118861 | 54.688 | 64 | 28 | 1 | 95 | 157 | 75 | 138 | 1.65e-16 | 75.9 |
Msa0249700 | MtrunA17_Chr3g0090331 | 38.835 | 103 | 58 | 3 | 67 | 164 | 41 | 143 | 9.30e-16 | 73.6 |
Msa0249700 | MtrunA17_Chr4g0068841 | 41.053 | 95 | 48 | 3 | 64 | 157 | 14 | 101 | 9.66e-16 | 73.6 |
Msa0249700 | MtrunA17_Chr7g0229651 | 35.246 | 122 | 66 | 5 | 8 | 120 | 1 | 118 | 3.82e-15 | 69.7 |
Msa0249700 | MtrunA17_Chr1g0199991 | 46.479 | 71 | 35 | 2 | 95 | 162 | 32 | 102 | 1.12e-14 | 70.5 |
Msa0249700 | MtrunA17_Chr4g0020241 | 37.778 | 90 | 54 | 1 | 75 | 162 | 51 | 140 | 1.54e-14 | 70.1 |
Msa0249700 | MtrunA17_Chr4g0068861 | 39.785 | 93 | 46 | 3 | 66 | 157 | 64 | 147 | 2.20e-14 | 69.7 |
Msa0249700 | MtrunA17_Chr1g0199971 | 47.887 | 71 | 34 | 2 | 95 | 162 | 32 | 102 | 2.20e-14 | 69.7 |
Msa0249700 | MtrunA17_Chr2g0281631 | 56.604 | 53 | 22 | 1 | 96 | 147 | 45 | 97 | 6.19e-14 | 64.7 |
Msa0249700 | MtrunA17_Chr2g0309521 | 43.590 | 78 | 38 | 3 | 89 | 164 | 37 | 110 | 2.16e-13 | 67.0 |
Msa0249700 | MtrunA17_Chr2g0309511 | 42.308 | 78 | 39 | 3 | 89 | 164 | 37 | 110 | 8.69e-13 | 65.1 |
Msa0249700 | MtrunA17_Chr2g0318911 | 38.636 | 88 | 51 | 3 | 80 | 164 | 24 | 111 | 2.36e-12 | 63.9 |
Msa0249700 | MtrunA17_Chr2g0309541 | 43.478 | 69 | 37 | 2 | 98 | 164 | 41 | 109 | 2.85e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249700 | AT1G28110.1 | 59.091 | 66 | 27 | 0 | 92 | 157 | 28 | 93 | 6.85e-22 | 91.7 |
Msa0249700 | AT1G28110.1 | 41.803 | 122 | 64 | 4 | 6 | 121 | 205 | 325 | 1.69e-20 | 87.4 |
Msa0249700 | AT1G28110.2 | 59.091 | 66 | 27 | 0 | 92 | 157 | 28 | 93 | 6.85e-22 | 91.7 |
Msa0249700 | AT1G28110.2 | 41.803 | 122 | 64 | 4 | 6 | 121 | 205 | 325 | 1.69e-20 | 87.4 |
Msa0249700 | AT2G33530.1 | 60.317 | 63 | 25 | 0 | 95 | 157 | 33 | 95 | 6.75e-21 | 88.6 |
Msa0249700 | AT2G33530.1 | 39.837 | 123 | 67 | 4 | 6 | 121 | 207 | 329 | 4.53e-20 | 86.3 |
Msa0249700 | AT1G61130.1 | 53.623 | 69 | 32 | 0 | 96 | 164 | 32 | 100 | 2.01e-18 | 81.6 |
Msa0249700 | AT5G23210.3 | 48.571 | 70 | 36 | 0 | 95 | 164 | 51 | 120 | 2.31e-18 | 81.6 |
Msa0249700 | AT5G23210.1 | 48.571 | 70 | 36 | 0 | 95 | 164 | 51 | 120 | 2.44e-18 | 81.6 |
Msa0249700 | AT5G42230.1 | 61.290 | 62 | 24 | 0 | 96 | 157 | 29 | 90 | 1.72e-17 | 79.0 |
Msa0249700 | AT5G42230.2 | 61.290 | 62 | 24 | 0 | 96 | 157 | 29 | 90 | 1.72e-17 | 79.0 |
Msa0249700 | AT3G02110.1 | 47.143 | 70 | 37 | 0 | 95 | 164 | 37 | 106 | 2.84e-17 | 78.6 |
Msa0249700 | AT1G11080.2 | 54.286 | 70 | 31 | 1 | 96 | 164 | 50 | 119 | 5.68e-17 | 77.8 |
Msa0249700 | AT1G11080.1 | 54.286 | 70 | 31 | 1 | 96 | 164 | 50 | 119 | 6.18e-17 | 77.4 |
Msa0249700 | AT4G15100.1 | 50.725 | 69 | 34 | 0 | 96 | 164 | 45 | 113 | 8.07e-17 | 77.0 |
Msa0249700 | AT5G42240.1 | 58.065 | 62 | 26 | 0 | 96 | 157 | 33 | 94 | 1.01e-16 | 77.0 |
Msa0249700 | AT1G43780.1 | 60.317 | 63 | 24 | 1 | 96 | 157 | 37 | 99 | 1.18e-16 | 76.6 |
Msa0249700 | AT2G12480.4 | 54.839 | 62 | 28 | 0 | 96 | 157 | 32 | 93 | 5.98e-16 | 74.7 |
Msa0249700 | AT2G12480.1 | 54.839 | 62 | 28 | 0 | 96 | 157 | 32 | 93 | 6.08e-16 | 74.7 |
Msa0249700 | AT2G12480.2 | 54.839 | 62 | 28 | 0 | 96 | 157 | 32 | 93 | 6.15e-16 | 74.7 |
Msa0249700 | AT3G63470.1 | 39.423 | 104 | 62 | 1 | 65 | 167 | 50 | 153 | 6.63e-16 | 74.7 |
Msa0249700 | AT2G12480.3 | 54.839 | 62 | 28 | 0 | 96 | 157 | 32 | 93 | 7.08e-16 | 74.3 |
Msa0249700 | AT2G24000.2 | 43.662 | 71 | 39 | 1 | 95 | 164 | 30 | 100 | 1.92e-15 | 73.2 |
Msa0249700 | AT2G24000.1 | 43.662 | 71 | 39 | 1 | 95 | 164 | 30 | 100 | 2.22e-15 | 73.2 |
Msa0249700 | AT3G07990.1 | 49.315 | 73 | 34 | 2 | 95 | 164 | 33 | 105 | 2.32e-15 | 72.8 |
Msa0249700 | AT3G56540.1 | 53.448 | 58 | 27 | 0 | 96 | 153 | 80 | 137 | 4.20e-15 | 71.2 |
Msa0249700 | AT2G24010.1 | 43.284 | 67 | 38 | 0 | 96 | 162 | 31 | 97 | 4.71e-15 | 72.0 |
Msa0249700 | AT4G30610.1 | 42.254 | 71 | 40 | 1 | 95 | 164 | 32 | 102 | 1.79e-14 | 70.5 |
Msa0249700 | AT5G08260.1 | 47.297 | 74 | 37 | 2 | 96 | 167 | 39 | 112 | 2.05e-14 | 70.1 |
Msa0249700 | AT2G35770.1 | 42.254 | 71 | 40 | 1 | 95 | 164 | 37 | 107 | 4.90e-14 | 69.3 |
Msa0249700 | AT3G52020.1 | 56.364 | 55 | 24 | 0 | 99 | 153 | 83 | 137 | 8.87e-14 | 68.6 |
Msa0249700 | AT2G05850.1 | 47.143 | 70 | 36 | 1 | 99 | 167 | 67 | 136 | 3.54e-13 | 66.6 |
Msa0249700 | AT2G35780.1 | 45.205 | 73 | 37 | 2 | 95 | 164 | 29 | 101 | 3.77e-13 | 66.6 |
Msa0249700 | AT3G17180.2 | 39.726 | 73 | 42 | 2 | 87 | 157 | 30 | 102 | 1.48e-12 | 64.7 |
Msa0249700 | AT3G17180.1 | 39.726 | 73 | 42 | 2 | 87 | 157 | 30 | 102 | 1.67e-12 | 64.7 |
Find 59 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGTGGTCACATGGCCTTAT+AGG | 0.173160 | 2_2:+37101157 | Msa0249700:CDS |
AAAATCACTCGGTTGAAATT+AGG | 0.196260 | 2_2:-37102525 | None:intergenic |
TTGTTCCTGCCGTTTGAATA+TGG | 0.248339 | 2_2:-37101212 | None:intergenic |
CGTGGTCACATGGCCTTATA+GGG | 0.259428 | 2_2:+37101158 | Msa0249700:CDS |
GCAGATTGGGAATTCTCTTT+TGG | 0.280950 | 2_2:+37101105 | Msa0249700:intron |
TATGGAGAAATTGCAACTTT+TGG | 0.341716 | 2_2:-37101194 | None:intergenic |
AAAAGAAGCATACTTGGTTA+TGG | 0.347326 | 2_2:-37102557 | None:intergenic |
TACTGATAACTGGAATCTTT+AGG | 0.349143 | 2_2:+37102390 | Msa0249700:three_prime_UTR |
TACCGGTCAAAATCTACTTT+TGG | 0.356029 | 2_2:-37102045 | None:intergenic |
TTCAAACGGCAGGAACAAAT+TGG | 0.362605 | 2_2:+37101217 | Msa0249700:CDS |
GTATGCAAATTACATTACTA+TGG | 0.372719 | 2_2:+37102065 | Msa0249700:CDS |
CAGGAGTGAGGAATACATAC+TGG | 0.380995 | 2_2:-37100009 | None:intergenic |
GGTTGCTCTTCCGTTGGCCT+AGG | 0.383442 | 2_2:+37102281 | Msa0249700:CDS |
ACATTGAAGCTAAGCTAGAT+AGG | 0.384366 | 2_2:-37102497 | None:intergenic |
GGAGCACCAAGGAGCGTTGC+TGG | 0.387042 | 2_2:+37102302 | Msa0249700:CDS |
TGCTAGAATGTACTGATAAC+TGG | 0.395632 | 2_2:+37102380 | Msa0249700:three_prime_UTR |
TGAATGTGGAATCCCCTATA+AGG | 0.396885 | 2_2:-37101171 | None:intergenic |
CTTTAGGTTCATAAATATAG+TGG | 0.414606 | 2_2:+37102406 | Msa0249700:three_prime_UTR |
TGCAGATAGGCTGCATCATC+CGG | 0.416393 | 2_2:+37101433 | Msa0249700:CDS |
TCTTCCACTCTCTTATAACA+TGG | 0.454103 | 2_2:+37099867 | Msa0249700:five_prime_UTR |
GGGCTTGGTTGCTCTTCCGT+TGG | 0.455046 | 2_2:+37102275 | Msa0249700:intron |
AGATGGAGGGTGGGAGAGAG+TGG | 0.463344 | 2_2:-37099985 | None:intergenic |
TCCTTTATGAACAGACTAGC+AGG | 0.475755 | 2_2:+37101360 | Msa0249700:intron |
TAGATTTCCTACATGCAGAT+AGG | 0.491769 | 2_2:+37101420 | Msa0249700:CDS |
TCATAACCAGCAACGCTCCT+TGG | 0.495051 | 2_2:-37102308 | None:intergenic |
CTAAGATTATTTGTAAATGT+CGG | 0.511902 | 2_2:+37102436 | Msa0249700:three_prime_UTR |
CTTCCACTCTCTTATAACAT+GGG | 0.513545 | 2_2:+37099868 | Msa0249700:five_prime_UTR |
TATGTATTCCTCACTCCTGC+AGG | 0.521539 | 2_2:+37100013 | Msa0249700:exon |
CAACGCTCCTTGGTGCTCCT+AGG | 0.521898 | 2_2:-37102298 | None:intergenic |
GCAATTTCTCCATATTCAAA+CGG | 0.527474 | 2_2:+37101203 | Msa0249700:CDS |
TTTCTCCATATTCAAACGGC+AGG | 0.530406 | 2_2:+37101207 | Msa0249700:CDS |
TGAAATGAGAAGAAAATGAG+AGG | 0.535824 | 2_2:-37099962 | None:intergenic |
CGATCCAGCTTCAAAACCAT+TGG | 0.537499 | 2_2:+37102137 | Msa0249700:CDS |
TAGTAATGTAATTTGCATAC+CGG | 0.545218 | 2_2:-37102062 | None:intergenic |
CCATTCAACAAAAGCACCAA+TGG | 0.551134 | 2_2:-37102153 | None:intergenic |
TGAGAAGAAAATGAGAGGGT+AGG | 0.553508 | 2_2:-37099957 | None:intergenic |
ACATACTGGGAGATGGAGGG+TGG | 0.556489 | 2_2:-37099995 | None:intergenic |
GAGGAATACATACTGGGAGA+TGG | 0.562747 | 2_2:-37100002 | None:intergenic |
CCTTGGTGCTCCTAGGCCAA+CGG | 0.580344 | 2_2:-37102291 | None:intergenic |
AGACCCATGTTATAAGAGAG+TGG | 0.587536 | 2_2:-37099871 | None:intergenic |
GCTGAATATCCGTGGTCACA+TGG | 0.587997 | 2_2:+37101148 | Msa0249700:CDS |
TGTATATACCTGCAGGAGTG+AGG | 0.597606 | 2_2:-37100021 | None:intergenic |
GAAATGAGAAGAAAATGAGA+GGG | 0.598159 | 2_2:-37099961 | None:intergenic |
ATCAGTACATTCTAGCAGCA+AGG | 0.600578 | 2_2:-37102374 | None:intergenic |
GAATACATACTGGGAGATGG+AGG | 0.606046 | 2_2:-37099999 | None:intergenic |
GTCATACACATCAGAGCAGA+TGG | 0.608333 | 2_2:-37101251 | None:intergenic |
CATACTGGGAGATGGAGGGT+GGG | 0.609704 | 2_2:-37099994 | None:intergenic |
AATACATACTGGGAGATGGA+GGG | 0.620432 | 2_2:-37099998 | None:intergenic |
CACATCGGAGGTTACATCGA+AGG | 0.628243 | 2_2:-37101393 | None:intergenic |
GATGCAGCCTATCTGCATGT+AGG | 0.628727 | 2_2:-37101427 | None:intergenic |
GTGGTCACATGGCCTTATAG+GGG | 0.629985 | 2_2:+37101159 | Msa0249700:CDS |
AGGAGTGAGGAATACATACT+GGG | 0.639247 | 2_2:-37100008 | None:intergenic |
GGTTTGCCATGAAAATCACT+CGG | 0.641055 | 2_2:-37102536 | None:intergenic |
CCTATAAGGCCATGTGACCA+CGG | 0.645994 | 2_2:-37101157 | None:intergenic |
TAGGAAATCTAGACACACAT+CGG | 0.671427 | 2_2:-37101408 | None:intergenic |
ATTATAGAGCTGAATATCCG+TGG | 0.679132 | 2_2:+37101140 | Msa0249700:CDS |
GAAATCTAGACACACATCGG+AGG | 0.703734 | 2_2:-37101405 | None:intergenic |
CCGTTGGCCTAGGAGCACCA+AGG | 0.726967 | 2_2:+37102291 | Msa0249700:CDS |
GTATGACGAAGTCACAACAT+CGG | 0.746373 | 2_2:+37101267 | Msa0249700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTATTTTTATTTTTTT+AGG | + | chr2_2:37100466-37100485 | Msa0249700:intron | 0.0% |
!!! | TTTTTATTTTTATTTTTTTA+GGG | + | chr2_2:37100467-37100486 | Msa0249700:intron | 0.0% |
!! | TAATAAATTTATAATAAATT+TGG | - | chr2_2:37100799-37100818 | None:intergenic | 0.0% |
!!! | GATATTTTAATTTCAAAATA+AGG | + | chr2_2:37100277-37100296 | Msa0249700:intron | 10.0% |
!! | AAATTTATAATAAATTTGGT+GGG | - | chr2_2:37100795-37100814 | None:intergenic | 10.0% |
!! | TAAATTTATAATAAATTTGG+TGG | - | chr2_2:37100796-37100815 | None:intergenic | 10.0% |
!! | TATTTGAAAGAAAAAAAATA+AGG | + | chr2_2:37100855-37100874 | Msa0249700:intron | 10.0% |
!! | ATTTGAAAGAAAAAAAATAA+GGG | + | chr2_2:37100856-37100875 | Msa0249700:intron | 10.0% |
!! | TCAATTATTTATGTTATAAA+AGG | + | chr2_2:37101683-37101702 | Msa0249700:intron | 10.0% |
!! | CAATTATTTATGTTATAAAA+GGG | + | chr2_2:37101684-37101703 | Msa0249700:intron | 10.0% |
!! | AATTATTTATGTTATAAAAG+GGG | + | chr2_2:37101685-37101704 | Msa0249700:intron | 10.0% |
!!! | GATTTTTTTACAATCAAAAA+GGG | - | chr2_2:37100568-37100587 | None:intergenic | 15.0% |
!!! | TGATTTTTTTACAATCAAAA+AGG | - | chr2_2:37100569-37100588 | None:intergenic | 15.0% |
!! | TAATGTCAGATTATATATAT+AGG | + | chr2_2:37100706-37100725 | Msa0249700:intron | 15.0% |
!! | TATGCAAATGATAATATATT+CGG | + | chr2_2:37102191-37102210 | Msa0249700:intron | 15.0% |
!! | TAAAAAAATCACGAAATTTG+CGG | + | chr2_2:37100578-37100597 | Msa0249700:intron | 20.0% |
!! | ATAATTGAATAGTAAACGTA+CGG | - | chr2_2:37101671-37101690 | None:intergenic | 20.0% |
!!! | TCTAGATTTTTTTTTTTCTC+TGG | + | chr2_2:37101743-37101762 | Msa0249700:intron | 20.0% |
!!! | ACATTTTATATCCTTCAAAT+TGG | - | chr2_2:37101770-37101789 | None:intergenic | 20.0% |
!! | ATTAGCATTAAATACAAAAC+TGG | - | chr2_2:37101877-37101896 | None:intergenic | 20.0% |
!!! | AATAGAAAAGTTTTCTATCT+TGG | - | chr2_2:37102098-37102117 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTGGGATTTTGA+AGG | + | chr2_2:37102254-37102273 | Msa0249700:intron | 20.0% |
!!! | TTTTTTTTTGGGATTTTGAA+GGG | + | chr2_2:37102255-37102274 | Msa0249700:intron | 20.0% |
!! | CTAAGATTATTTGTAAATGT+CGG | + | chr2_2:37102436-37102455 | Msa0249700:three_prime_UTR | 20.0% |
! | TCTCTCAATGAACTAATTAA+CGG | + | chr2_2:37100056-37100075 | Msa0249700:intron | 25.0% |
!! | ACACTTGACAAATTTAAGAT+CGG | - | chr2_2:37100106-37100125 | None:intergenic | 25.0% |
! | ATCTTAAATTTGTCAAGTGT+TGG | + | chr2_2:37100106-37100125 | Msa0249700:intron | 25.0% |
! | TGATAATAATCCCTAACAAA+GGG | + | chr2_2:37100383-37100402 | Msa0249700:intron | 25.0% |
! | AATCAAAAAGGGAGAAATTA+AGG | - | chr2_2:37100557-37100576 | None:intergenic | 25.0% |
! | AACTAATGTGAAACAGTATA+GGG | - | chr2_2:37100637-37100656 | None:intergenic | 25.0% |
! | AAACTAATGTGAAACAGTAT+AGG | - | chr2_2:37100638-37100657 | None:intergenic | 25.0% |
! | ATATATGAACAGAAAACGAA+AGG | - | chr2_2:37101492-37101511 | None:intergenic | 25.0% |
! | GAATGCTAAATCAAAGATTA+AGG | - | chr2_2:37101530-37101549 | None:intergenic | 25.0% |
!! | TAATCTTTGATTTAGCATTC+TGG | + | chr2_2:37101530-37101549 | Msa0249700:intron | 25.0% |
!! | TATTCAAGTATTTTGCAATG+TGG | - | chr2_2:37101583-37101602 | None:intergenic | 25.0% |
! | TATTTATGTTATAAAAGGGG+TGG | + | chr2_2:37101688-37101707 | Msa0249700:intron | 25.0% |
! | AAATTACTGTTCTATTGAGA+TGG | - | chr2_2:37101813-37101832 | None:intergenic | 25.0% |
! | AATGAGTGTAAGTAACTATT+AGG | - | chr2_2:37101931-37101950 | None:intergenic | 25.0% |
!! | TAGTAATGTAATTTGCATAC+CGG | - | chr2_2:37102065-37102084 | None:intergenic | 25.0% |
! | GTATGCAAATTACATTACTA+TGG | + | chr2_2:37102065-37102084 | Msa0249700:CDS | 25.0% |
!! | CTTTAGGTTCATAAATATAG+TGG | + | chr2_2:37102406-37102425 | Msa0249700:three_prime_UTR | 25.0% |
! | CATTCATAGCATCTCATTTT+CGG | + | chr2_2:37099918-37099937 | Msa0249700:five_prime_UTR | 30.0% |
GAAATGAGAAGAAAATGAGA+GGG | - | chr2_2:37099964-37099983 | None:intergenic | 30.0% | |
TGAAATGAGAAGAAAATGAG+AGG | - | chr2_2:37099965-37099984 | None:intergenic | 30.0% | |
!!! | TAGTTGCTGTTTTAGTTTAG+AGG | + | chr2_2:37100133-37100152 | Msa0249700:intron | 30.0% |
! | TTGTTAGTCTAGAAATCAAG+TGG | + | chr2_2:37100177-37100196 | Msa0249700:intron | 30.0% |
GTGATAATAATCCCTAACAA+AGG | + | chr2_2:37100382-37100401 | Msa0249700:intron | 30.0% | |
ATACACGTATGAAATTGCAA+AGG | + | chr2_2:37100424-37100443 | Msa0249700:intron | 30.0% | |
AAGGGAGAAATTAAGGAAAA+AGG | - | chr2_2:37100550-37100569 | None:intergenic | 30.0% | |
!! | GAGCATCGTATTATGAATTT+TGG | - | chr2_2:37100606-37100625 | None:intergenic | 30.0% |
! | AAATTTGAAGTGATAGTCAC+AGG | + | chr2_2:37100880-37100899 | Msa0249700:intron | 30.0% |
TGTGTTTACAATTGCAGATT+GGG | + | chr2_2:37101092-37101111 | Msa0249700:intron | 30.0% | |
!! | TTCTCTTTTGGATTTTGACA+CGG | + | chr2_2:37101117-37101136 | Msa0249700:CDS | 30.0% |
! | TATGGAGAAATTGCAACTTT+TGG | - | chr2_2:37101197-37101216 | None:intergenic | 30.0% |
GCAATTTCTCCATATTCAAA+CGG | + | chr2_2:37101203-37101222 | Msa0249700:CDS | 30.0% | |
AATGCATCAAGTGTATATAC+CGG | - | chr2_2:37101455-37101474 | None:intergenic | 30.0% | |
ACTGGACAAAATGAACTAAA+CGG | - | chr2_2:37101859-37101878 | None:intergenic | 30.0% | |
CTGTAACAGAAGAGAAATAT+TGG | - | chr2_2:37101901-37101920 | None:intergenic | 30.0% | |
ATAATCTTCAGAGACTAGTA+AGG | + | chr2_2:37102005-37102024 | Msa0249700:intron | 30.0% | |
! | ACTTTTCTATTATTTCGTCG+AGG | + | chr2_2:37102107-37102126 | Msa0249700:CDS | 30.0% |
TACTGATAACTGGAATCTTT+AGG | + | chr2_2:37102390-37102409 | Msa0249700:three_prime_UTR | 30.0% | |
AAAATCACTCGGTTGAAATT+AGG | - | chr2_2:37102528-37102547 | None:intergenic | 30.0% | |
TCTTCCACTCTCTTATAACA+TGG | + | chr2_2:37099867-37099886 | Msa0249700:five_prime_UTR | 35.0% | |
CTTCCACTCTCTTATAACAT+GGG | + | chr2_2:37099868-37099887 | Msa0249700:five_prime_UTR | 35.0% | |
TTAGTTCATTGAGAGAGAGT+GGG | - | chr2_2:37100052-37100071 | None:intergenic | 35.0% | |
ATTAGTTCATTGAGAGAGAG+TGG | - | chr2_2:37100053-37100072 | None:intergenic | 35.0% | |
GGTAAGGTAGCATTAATCAA+CGG | - | chr2_2:37100960-37100979 | None:intergenic | 35.0% | |
CAATCTGCAATTGTAAACAC+AGG | - | chr2_2:37101093-37101112 | None:intergenic | 35.0% | |
CTGTGTTTACAATTGCAGAT+TGG | + | chr2_2:37101091-37101110 | Msa0249700:intron | 35.0% | |
ATTATAGAGCTGAATATCCG+TGG | + | chr2_2:37101140-37101159 | Msa0249700:CDS | 35.0% | |
! | ATTGCAACTTTTGGTGAATG+TGG | - | chr2_2:37101188-37101207 | None:intergenic | 35.0% |
TAGGAAATCTAGACACACAT+CGG | - | chr2_2:37101411-37101430 | None:intergenic | 35.0% | |
TAGATTTCCTACATGCAGAT+AGG | + | chr2_2:37101420-37101439 | Msa0249700:CDS | 35.0% | |
GCTAAATCAAAGATTAAGGC+AGG | - | chr2_2:37101526-37101545 | None:intergenic | 35.0% | |
! | TTAGCATTCTGGAAAGAAGA+TGG | + | chr2_2:37101541-37101560 | Msa0249700:intron | 35.0% |
TGGAGTTTAGAAGAATACTG+TGG | + | chr2_2:37101708-37101727 | Msa0249700:intron | 35.0% | |
! | TTTTCTCTGGTCCAATTTGA+AGG | + | chr2_2:37101756-37101775 | Msa0249700:intron | 35.0% |
!! | AAATCTACTTTTGGCTGATC+AGG | - | chr2_2:37102039-37102058 | None:intergenic | 35.0% |
!! | AGCCAAAAGTAGATTTTGAC+CGG | + | chr2_2:37102043-37102062 | Msa0249700:CDS | 35.0% |
! | TACCGGTCAAAATCTACTTT+TGG | - | chr2_2:37102048-37102067 | None:intergenic | 35.0% |
TATATTCGGATGTAAACCAC+TGG | + | chr2_2:37102205-37102224 | Msa0249700:intron | 35.0% | |
! | TGCTAGAATGTACTGATAAC+TGG | + | chr2_2:37102380-37102399 | Msa0249700:three_prime_UTR | 35.0% |
ACATTGAAGCTAAGCTAGAT+AGG | - | chr2_2:37102500-37102519 | None:intergenic | 35.0% | |
! | TTTCAACCGAGTGATTTTCA+TGG | + | chr2_2:37102530-37102549 | Msa0249700:three_prime_UTR | 35.0% |
AGACCCATGTTATAAGAGAG+TGG | - | chr2_2:37099874-37099893 | None:intergenic | 40.0% | |
TGAGAAGAAAATGAGAGGGT+AGG | - | chr2_2:37099960-37099979 | None:intergenic | 40.0% | |
AATACATACTGGGAGATGGA+GGG | - | chr2_2:37100001-37100020 | None:intergenic | 40.0% | |
AGGAGTGAGGAATACATACT+GGG | - | chr2_2:37100011-37100030 | None:intergenic | 40.0% | |
CTGAAAGCTACCCTTTGTTA+GGG | - | chr2_2:37100396-37100415 | None:intergenic | 40.0% | |
ACTGAAAGCTACCCTTTGTT+AGG | - | chr2_2:37100397-37100416 | None:intergenic | 40.0% | |
TAACAAAGGGTAGCTTTCAG+TGG | + | chr2_2:37100396-37100415 | Msa0249700:intron | 40.0% | |
TTGAAGTGATAGTCACAGGT+AGG | + | chr2_2:37100884-37100903 | Msa0249700:intron | 40.0% | |
ATACCCTTCAGGTCAATGTT+GGG | - | chr2_2:37100988-37101007 | None:intergenic | 40.0% | |
AATACCCTTCAGGTCAATGT+TGG | - | chr2_2:37100989-37101008 | None:intergenic | 40.0% | |
! | GCAGATTGGGAATTCTCTTT+TGG | + | chr2_2:37101105-37101124 | Msa0249700:intron | 40.0% |
TGAATGTGGAATCCCCTATA+AGG | - | chr2_2:37101174-37101193 | None:intergenic | 40.0% | |
TTTCTCCATATTCAAACGGC+AGG | + | chr2_2:37101207-37101226 | Msa0249700:CDS | 40.0% | |
! | TTGTTCCTGCCGTTTGAATA+TGG | - | chr2_2:37101215-37101234 | None:intergenic | 40.0% |
TTCAAACGGCAGGAACAAAT+TGG | + | chr2_2:37101217-37101236 | Msa0249700:CDS | 40.0% | |
GTATGACGAAGTCACAACAT+CGG | + | chr2_2:37101267-37101286 | Msa0249700:CDS | 40.0% | |
TCCTTTATGAACAGACTAGC+AGG | + | chr2_2:37101360-37101379 | Msa0249700:intron | 40.0% | |
! | ACCTGCTAGTCTGTTCATAA+AGG | - | chr2_2:37101364-37101383 | None:intergenic | 40.0% |
CTCTTCACAACAACGTTGTA+GGG | + | chr2_2:37101621-37101640 | Msa0249700:intron | 40.0% | |
! | ATAGTAAACGTACGGACTAC+AGG | - | chr2_2:37101663-37101682 | None:intergenic | 40.0% |
!!! | CAATGGTTTTGAAGCTGGAT+CGG | - | chr2_2:37102139-37102158 | None:intergenic | 40.0% |
!! | CCATTCAACAAAAGCACCAA+TGG | - | chr2_2:37102156-37102175 | None:intergenic | 40.0% |
!! | CCATTGGTGCTTTTGTTGAA+TGG | + | chr2_2:37102153-37102172 | Msa0249700:CDS | 40.0% |
!! | TTGGTGCTTTTGTTGAATGG+AGG | + | chr2_2:37102156-37102175 | Msa0249700:CDS | 40.0% |
! | GCTTTTGTTGAATGGAGGTA+AGG | + | chr2_2:37102161-37102180 | Msa0249700:intron | 40.0% |
!!! | TTTTGGGATTTTGAAGGGCT+TGG | + | chr2_2:37102260-37102279 | Msa0249700:intron | 40.0% |
ATCAGTACATTCTAGCAGCA+AGG | - | chr2_2:37102377-37102396 | None:intergenic | 40.0% | |
GGTTTGCCATGAAAATCACT+CGG | - | chr2_2:37102539-37102558 | None:intergenic | 40.0% | |
GAATACATACTGGGAGATGG+AGG | - | chr2_2:37100002-37100021 | None:intergenic | 45.0% | |
GAGGAATACATACTGGGAGA+TGG | - | chr2_2:37100005-37100024 | None:intergenic | 45.0% | |
CAGGAGTGAGGAATACATAC+TGG | - | chr2_2:37100012-37100031 | None:intergenic | 45.0% | |
TATGTATTCCTCACTCCTGC+AGG | + | chr2_2:37100013-37100032 | Msa0249700:exon | 45.0% | |
TGTATATACCTGCAGGAGTG+AGG | - | chr2_2:37100024-37100043 | None:intergenic | 45.0% | |
AAGTGATAGTCACAGGTAGG+TGG | + | chr2_2:37100887-37100906 | Msa0249700:intron | 45.0% | |
! | TTCAGGTCAATGTTGGGTTG+GGG | - | chr2_2:37100982-37101001 | None:intergenic | 45.0% |
CTTCAGGTCAATGTTGGGTT+GGG | - | chr2_2:37100983-37101002 | None:intergenic | 45.0% | |
CAACCCAACATTGACCTGAA+GGG | + | chr2_2:37100982-37101001 | Msa0249700:intron | 45.0% | |
!! | CATTGACCTGAAGGGTATTG+CGG | + | chr2_2:37100990-37101009 | Msa0249700:intron | 45.0% |
GTCATACACATCAGAGCAGA+TGG | - | chr2_2:37101254-37101273 | None:intergenic | 45.0% | |
GAAATCTAGACACACATCGG+AGG | - | chr2_2:37101408-37101427 | None:intergenic | 45.0% | |
CGTTGTTGTGAAGAGCTTTG+TGG | - | chr2_2:37101616-37101635 | None:intergenic | 45.0% | |
GCTCTTCACAACAACGTTGT+AGG | + | chr2_2:37101620-37101639 | Msa0249700:intron | 45.0% | |
ACGTTGTAGGGATCTCACAT+TGG | + | chr2_2:37101633-37101652 | Msa0249700:intron | 45.0% | |
CGATCCAGCTTCAAAACCAT+TGG | + | chr2_2:37102137-37102156 | Msa0249700:CDS | 45.0% | |
!!! | AGCACCAATGGTTTTGAAGC+TGG | - | chr2_2:37102144-37102163 | None:intergenic | 45.0% |
! | AGATCAGATCAAAGCACCAG+TGG | - | chr2_2:37102224-37102243 | None:intergenic | 45.0% |
!! | ATTAATTATTATTATTATTC+AGG | + | chr2_2:37100321-37100340 | Msa0249700:intron | 5.0% |
!!! | TTACTTTTTTTTTTTTTTTT+TGG | + | chr2_2:37102243-37102262 | Msa0249700:intron | 5.0% |
!!! | TACTTTTTTTTTTTTTTTTT+GGG | + | chr2_2:37102244-37102263 | Msa0249700:intron | 5.0% |
! | GGAGAGGTGTATATACCTGC+AGG | - | chr2_2:37100031-37100050 | None:intergenic | 50.0% |
TCATTGAGAGAGAGTGGGAG+AGG | - | chr2_2:37100047-37100066 | None:intergenic | 50.0% | |
CAAAGGGTAGCTTTCAGTGG+TGG | + | chr2_2:37100399-37100418 | Msa0249700:intron | 50.0% | |
!! | TCAATGTTGGGTTGGGGGTA+AGG | - | chr2_2:37100976-37100995 | None:intergenic | 50.0% |
!! | TCAGGTCAATGTTGGGTTGG+GGG | - | chr2_2:37100981-37101000 | None:intergenic | 50.0% |
CCTTCAGGTCAATGTTGGGT+TGG | - | chr2_2:37100984-37101003 | None:intergenic | 50.0% | |
CCAACCCAACATTGACCTGA+AGG | + | chr2_2:37100981-37101000 | Msa0249700:intron | 50.0% | |
GCTGAATATCCGTGGTCACA+TGG | + | chr2_2:37101148-37101167 | Msa0249700:CDS | 50.0% | |
CCTATAAGGCCATGTGACCA+CGG | - | chr2_2:37101160-37101179 | None:intergenic | 50.0% | |
!! | CGTGGTCACATGGCCTTATA+GGG | + | chr2_2:37101158-37101177 | Msa0249700:CDS | 50.0% |
!! | GTGGTCACATGGCCTTATAG+GGG | + | chr2_2:37101159-37101178 | Msa0249700:CDS | 50.0% |
GACGAAGTCACAACATCGGT+TGG | + | chr2_2:37101271-37101290 | Msa0249700:intron | 50.0% | |
CACATCGGAGGTTACATCGA+AGG | - | chr2_2:37101396-37101415 | None:intergenic | 50.0% | |
GATGCAGCCTATCTGCATGT+AGG | - | chr2_2:37101430-37101449 | None:intergenic | 50.0% | |
TGCAGATAGGCTGCATCATC+CGG | + | chr2_2:37101433-37101452 | Msa0249700:CDS | 50.0% | |
TCATAACCAGCAACGCTCCT+TGG | - | chr2_2:37102311-37102330 | None:intergenic | 50.0% | |
CATACTGGGAGATGGAGGGT+GGG | - | chr2_2:37099997-37100016 | None:intergenic | 55.0% | |
ACATACTGGGAGATGGAGGG+TGG | - | chr2_2:37099998-37100017 | None:intergenic | 55.0% | |
!! | GACCTGAAGGGTATTGCGGT+AGG | + | chr2_2:37100994-37101013 | Msa0249700:intron | 55.0% |
CACCTACCGCAATACCCTTC+AGG | - | chr2_2:37100999-37101018 | None:intergenic | 55.0% | |
!! | CCGTGGTCACATGGCCTTAT+AGG | + | chr2_2:37101157-37101176 | Msa0249700:CDS | 55.0% |
AGATGGAGGGTGGGAGAGAG+TGG | - | chr2_2:37099988-37100007 | None:intergenic | 60.0% | |
! | GGGCTTGGTTGCTCTTCCGT+TGG | + | chr2_2:37102275-37102294 | Msa0249700:intron | 60.0% |
! | GGTTGCTCTTCCGTTGGCCT+AGG | + | chr2_2:37102281-37102300 | Msa0249700:CDS | 60.0% |
!! | CCTTGGTGCTCCTAGGCCAA+CGG | - | chr2_2:37102294-37102313 | None:intergenic | 60.0% |
!! | CAACGCTCCTTGGTGCTCCT+AGG | - | chr2_2:37102301-37102320 | None:intergenic | 60.0% |
!! | CCGTTGGCCTAGGAGCACCA+AGG | + | chr2_2:37102291-37102310 | Msa0249700:CDS | 65.0% |
!! | GGAGCACCAAGGAGCGTTGC+TGG | + | chr2_2:37102302-37102321 | Msa0249700:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 37099864 | 37102567 | 37099864 | ID=Msa0249700;Name=Msa0249700 |
chr2_2 | mRNA | 37099864 | 37102567 | 37099864 | ID=Msa0249700-mRNA-1;Parent=Msa0249700;Name=Msa0249700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=150|0.4|0.66|1|0.4|0.5|6|227|167 |
chr2_2 | exon | 37099864 | 37100034 | 37099864 | ID=Msa0249700-mRNA-1:exon:11758;Parent=Msa0249700-mRNA-1 |
chr2_2 | exon | 37101109 | 37101288 | 37101109 | ID=Msa0249700-mRNA-1:exon:11759;Parent=Msa0249700-mRNA-1 |
chr2_2 | exon | 37101374 | 37101454 | 37101374 | ID=Msa0249700-mRNA-1:exon:11760;Parent=Msa0249700-mRNA-1 |
chr2_2 | exon | 37102016 | 37102021 | 37102016 | ID=Msa0249700-mRNA-1:exon:11761;Parent=Msa0249700-mRNA-1 |
chr2_2 | exon | 37102027 | 37102177 | 37102027 | ID=Msa0249700-mRNA-1:exon:11762;Parent=Msa0249700-mRNA-1 |
chr2_2 | exon | 37102276 | 37102567 | 37102276 | ID=Msa0249700-mRNA-1:exon:11763;Parent=Msa0249700-mRNA-1 |
chr2_2 | five_prime_UTR | 37099864 | 37100013 | 37099864 | ID=Msa0249700-mRNA-1:five_prime_utr;Parent=Msa0249700-mRNA-1 |
chr2_2 | CDS | 37100014 | 37100034 | 37100014 | ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1 |
chr2_2 | CDS | 37101109 | 37101288 | 37101109 | ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1 |
chr2_2 | CDS | 37101374 | 37101454 | 37101374 | ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1 |
chr2_2 | CDS | 37102016 | 37102021 | 37102016 | ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1 |
chr2_2 | CDS | 37102027 | 37102177 | 37102027 | ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1 |
chr2_2 | CDS | 37102276 | 37102340 | 37102276 | ID=Msa0249700-mRNA-1:cds;Parent=Msa0249700-mRNA-1 |
chr2_2 | three_prime_UTR | 37102341 | 37102567 | 37102341 | ID=Msa0249700-mRNA-1:three_prime_utr;Parent=Msa0249700-mRNA-1 |
Gene Sequence |
Protein sequence |