AlfalfaGEDB | Msa1397970

M. sativa cultivar zhongmu-4 / Msa1397970

KEGG: K05387
GO: GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701
PFAM: PF01094.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397970	XP_013461855.2	91.903	988	68	2	3	989	2	978	0.0	1833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397970	sp\|Q8LGN0\|GLR27_ARATH	48.008	1004	444	22	3	989	8	950	0.0	892

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397970	A0A396IXV2	91.903	988	68	2	3	989	2	978	0.0	1833

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1397970	-0.835987	1.218329e-56	-8.615850e-47
Msa0003470	Msa1397970	0.834758	2.490994e-56	-8.615850e-47
Msa0004350	Msa1397970	0.815478	9.058731e-52	-8.615850e-47
Msa0005350	Msa1397970	0.808497	3.008678e-50	-8.615850e-47
Msa0006700	Msa1397970	0.858446	8.195770e-63	-8.615850e-47
Msa0006820	Msa1397970	0.815327	9.786548e-52	-8.615850e-47
Msa0008850	Msa1397970	0.871543	6.308256e-67	-8.615850e-47
Msa0011720	Msa1397970	0.844683	6.495228e-59	-8.615850e-47
Msa0013050	Msa1397970	-0.815297	9.938986e-52	-8.615850e-47
Msa0017120	Msa1397970	0.831368	1.737175e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397970	MtrunA17_Chr3g0136611	91.903	988	68	2	3	989	2	978	0.0	1833
Msa1397970	MtrunA17_Chr3g0136621	86.172	998	122	5	3	995	4	990	0.0	1722
Msa1397970	MtrunA17_Chr8g0370261	36.957	874	493	20	24	886	36	862	1.42e-173	531
Msa1397970	MtrunA17_Chr3g0144141	34.573	914	544	23	37	938	76	947	5.60e-168	517
Msa1397970	MtrunA17_Chr2g0322691	34.685	888	538	20	15	893	15	869	7.73e-166	510
Msa1397970	MtrunA17_Chr5g0407171	34.111	900	532	26	12	887	1	863	5.42e-162	501
Msa1397970	MtrunA17_Chr8g0370281	34.099	871	515	23	102	947	3	839	1.52e-157	486
Msa1397970	MtrunA17_Chr2g0322681	32.884	891	548	21	7	885	5	857	2.32e-155	483
Msa1397970	MtrunA17_Chr4g0046101	32.405	969	559	26	13	962	14	905	2.05e-152	475
Msa1397970	MtrunA17_Chr2g0283231	32.485	982	574	29	21	980	26	940	2.09e-149	468

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1397970	AT2G29120.1	48.008	1004	444	22	3	989	8	950	892
Msa1397970	AT2G29110.2	49.491	982	442	20	3	981	6	936	874
Msa1397970	AT2G29110.1	49.491	982	442	20	3	981	5	935	874
Msa1397970	AT2G29100.2	49.319	955	414	20	1	952	2	889	851
Msa1397970	AT2G29100.1	49.318	953	413	20	3	952	2	887	850
Msa1397970	AT2G24720.1	50.426	821	373	11	37	854	32	821	821
Msa1397970	AT5G27100.1	47.027	925	428	17	1	917	1	871	820
Msa1397970	AT5G11210.5	47.194	873	425	12	26	895	27	866	802
Msa1397970	AT2G24710.3	47.692	845	408	10	53	890	69	886	787
Msa1397970	AT2G24710.1	47.692	845	408	10	53	890	45	862	787

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Find 200 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATTGTCTACATAAA+TGG	0.116036	tig0022238:+28081	None:intergenic
AAAAGTTTAGAGCCAAGACT+TGG	0.551066	tig0022238:+27893	None:intergenic
AAACTATTGTCTACATAAAT+GGG	0.309910	tig0022238:+28082	None:intergenic
AAAGATTACGAGTGCTAATA+GGG	0.352188	tig0022238:+25072	None:intergenic
AAATGTGTTTGTGTTGATAT+AGG	0.376139	tig0022238:+25038	None:intergenic
AAATTTGTGTCAACAAGTGT+TGG	0.461667	tig0022238:+27668	None:intergenic
AACTATTGTCTACATAAATG+GGG	0.625124	tig0022238:+28083	None:intergenic
AAGAAGTGCAAGCCATCATG+GGG	0.657278	tig0022238:-28303	Msa1397970:CDS
AAGAGAAATTGCACTTAGAT+AGG	0.330576	tig0022238:+28000	None:intergenic
AAGATTTGTGGTGGTTGTAT+GGG	0.480530	tig0022238:-26006	Msa1397970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATTCATGGTTACTTGT+TGG	-	tig0022238:24799-24818	Msa1397970:CDS	30.0%
AGTAATGTTGTAGTGAAAGT+GGG	-	tig0022238:24870-24889	Msa1397970:CDS	30.0%
GTAATTGATGTTAGCAGTAA+TGG	-	tig0022238:24897-24916	Msa1397970:CDS	30.0%
GCTATAGAGACAAAATAAAG+GGG	+	tig0022238:25079-25098	None:intergenic	30.0%
AATTTCGGCATGCATATATA+TGG	-	tig0022238:25140-25159	Msa1397970:CDS	30.0%
CATTGTAGATTTGAAGACTT+AGG	+	tig0022238:26690-26709	None:intergenic	30.0%
CAAACATTCAGTCAATCATT+TGG	+	tig0022238:26719-26738	None:intergenic	30.0%
CATTGTAGATTTGAAGACTT+AGG	+	tig0022238:26690-26709	None:intergenic	30.0%
TTCTATGTCGTTCTAGTATT+TGG	+	tig0022238:27081-27100	None:intergenic	30.0%
AATAATGTTGTACAAGACGA+CGG	-	tig0022238:27106-27125	Msa1397970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022238	gene	24715	32767	24715	ID=Msa1397970;Name=Msa1397970
tig0022238	mRNA	24715	32767	24715	ID=Msa1397970-mRNA-1;Parent=Msa1397970;Name=Msa1397970-mRNA-1;_AED=0.26;_eAED=0.26;_QI=59\|0.75\|0.4\|1\|1\|1\|5\|0\|995
tig0022238	exon	24715	25293	24715	ID=Msa1397970-mRNA-1:exon:16394;Parent=Msa1397970-mRNA-1
tig0022238	exon	25644	26053	25644	ID=Msa1397970-mRNA-1:exon:16393;Parent=Msa1397970-mRNA-1
tig0022238	exon	26546	26858	26546	ID=Msa1397970-mRNA-1:exon:16392;Parent=Msa1397970-mRNA-1
tig0022238	exon	26944	28346	26944	ID=Msa1397970-mRNA-1:exon:16391;Parent=Msa1397970-mRNA-1
tig0022238	exon	32426	32767	32426	ID=Msa1397970-mRNA-1:exon:16390;Parent=Msa1397970-mRNA-1
tig0022238	five_prime_UTR	32709	32767	32709	ID=Msa1397970-mRNA-1:five_prime_utr;Parent=Msa1397970-mRNA-1
tig0022238	CDS	32426	32708	32426	ID=Msa1397970-mRNA-1:cds;Parent=Msa1397970-mRNA-1
tig0022238	CDS	26944	28346	26944	ID=Msa1397970-mRNA-1:cds;Parent=Msa1397970-mRNA-1
tig0022238	CDS	26546	26858	26546	ID=Msa1397970-mRNA-1:cds;Parent=Msa1397970-mRNA-1
tig0022238	CDS	25644	26053	25644	ID=Msa1397970-mRNA-1:cds;Parent=Msa1397970-mRNA-1
tig0022238	CDS	24715	25293	24715	ID=Msa1397970-mRNA-1:cds;Parent=Msa1397970-mRNA-1

Gene Sequence

>Msa1397970

ATGGATAAGCATAATCCAATAATTCTGAAATTCATGGTTACTTGTTGGTGTCTAGTTAATCTTTTGGGTGGAATATTAGCACAAACTAAAAAGGAGAGTAATGTTGTAGTGAAAGTGGGAGCTGTAATTGATGTTAGCAGTAATGGAACGGTTGGAAAGATAGGATTGAGTTGCATAAACATGTCACTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGAATCCAACTCATCCTAAGGGATTCTCATAGGGACGTCGTCACTGCAGCTGCACACGCTTTGGATCTCATTAAAAATGAAGAAGTGCAAGCCATCATGGGGCCAATAACAACAATAGAAACAAATTTCGTGATACAATTAGGAGACAAAGCTCATGTACCCATTGTAACCTTTTCAGCAACAAGCCCTTCACTTGCATCACTTCAAAGTCCATACTTCTTCCAAATATCACAAACTGATTCAGCTCAAGTAAAAGCAATCACCTCAATTATCCAAGCTTTTGGTTGGAAACAAGTGGTCCCCATTTATGTAGACAATAGTTTTGGTGAAGGACTCATTCCATGTTTAACCAATTTTCTTCAACATGCCTATATTCAAGTTCCCTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGATATCACTCAAGAGCTTTATAAAATAATGACTACTATACCCACTAGAGTATTTCTTGTGCACATGTCACCAAGTCTTGGCTCTAAACTTTTTACCTTAGCAAAACAAATTGGGATGATGAGTCAAGGCTATGTTTGGGTAGCAACCGATAGTATGGCTAATTTATTCAATTCCTTGAGTTATAATGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCTAGAACAAAAAAACTAGAGGATTTTAGAGTTAGATGGAAAAGAAAATTTTTAAGTGATAATCCAACACTTGTTGACACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGGAAGTTGGAATTGGAGCCACTAAATTTGGTTACAATGAGAGTAATACATCAAGCAATTATTACATGCCTGATTTTGAAAAGTTTGGTATTTCACAAAATGGTGAGAAATTGAGTGAAGCTTTGTCAAACACTAGATTTAATGGTCTTAGTGGTGATTTTGATGTTGTTGGTGGGAAGTTACAAGCATCAATATATGAGATAATTAATGTGATTGGTGATGGTGAAAAGAGAGTTGGATTTTGGACACCAAATAAAGGGCTGTCTAGAAATTTGGACACAGAAGGCCTAATAGGCAATAATAACATGTATTCTAGTTCTAAAAATGATCTTGGGTCAATCATATGGCCAGGTGATATGTACTCTATTCCAAAGGGATGGGAAATTCCTACTATTGGGAAGAAATTGAGGATAGGAGTTCCAGTTAAAAATGGATTTAACTACACTGAATTCTTGAAAGTAACATATGATCCTAGTACCAATTCAACACAAGCCACTGGCTTCTGCATTGATATCTTCAAAGCTGTGCTAGATGTTTTGCCTTATGCCTTACCATATGACTTTGTTCGATTTGCAAAGCCTGATGGTGAGATGGCAGGAACCTACAATGAGTTGATCGCTCAACTTTACGACGGGGTAACCTCTTCTTCTCATATAATATCTTCTCCTAAATTTGATGCGGTAGTGGGGGATATAACAATCACTGCAAGTAGGTCAAACTATGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTCAATGAAAGACAACAGGAAGAAAAATGCATGGGCCTTTTTGAAGCCACTCACATGGGATCTTTGGGTGACATCAGCTTGTTCATTTGTGTTCATTGGATTTGTTGTTTGGGTCCTTGAACATAGAATAAACAATGATTTCAGGGGACCACTCTCTCATCAGATTGGCACAAGCTTATGGTTTTCCTTCTCAACTATGGTCTATGCTCATAGAGAGAAAGTAGTGAGTAACTTGGCAAGATTTGTGGTGGTTGTATGGGTTTTTGTGGTTCTAATTCTTGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTGACAGTTGAACAACTAAGGCCAGCTATTACAGACGTACACCAACTTCTAAAGAATAAGATGAATGTCGGCTATCTCAAAGGTTCTTTTGTTTATGGAATTTTGAAGGACTTGGGTTTCGAAGATTCTCATCTCATTACTTATCAATCTGCTGAAGAATGTAATGAGCTTTTTATAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAGTTCCCTATATTAAGCACTTTCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGTGGCTTTGGCTATGCTTTTCCAAAAGGCTCACCTCTTGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAATGCATGGTTAAAGAAAACTAGTTGTCTAGATTCTAACACAGAAATTTCCTCAAATAACAGTCTTGGACTTGAAAGCTTTTGGGGTCTGTTTCTCATTGCAGGGATTGCTTCCCTATTAGCACTCGTAATCTTTGTTATCACATTCCTATATCAACACAAACACATTTGGTTACCCAATAGTCCAAGTACTTCAATATGGAGACGAATTCGCGTCTTGGTAATGATATTTGATCAAAGAGACTTAAACTCTCACACATTCAAGAAGAGTGGAAATAAAAATGAAAGCAGTAAAAGTCCTCATCATGATGATTTAGGTGCAGTTGAGGCCTCTCCAGGTACACATTGTCCACCTAGTCCATTTAGTCAAACTGAATCAAACGTTTCCTTGAATGACGATTTTAGTCCAAACACAGAATTGGATGTTGTACAAATTACTAATCAGGAAGTTTCCCCTGTGAATAACTGTGAAAGTAACCCCCAAGCAACTTGA

Protein sequence

>Msa1397970

MDKHNPIILKFMVTCWCLVNLLGGILAQTKKESNVVVKVGAVIDVSSNGTVGKIGLSCINMSLSDFYLSHSHYKTRIQLILRDSHRDVVTAAAHALDLIKNEEVQAIMGPITTIETNFVIQLGDKAHVPIVTFSATSPSLASLQSPYFFQISQTDSAQVKAITSIIQAFGWKQVVPIYVDNSFGEGLIPCLTNFLQHAYIQVPYLSAISLSATDDDITQELYKIMTTIPTRVFLVHMSPSLGSKLFTLAKQIGMMSQGYVWVATDSMANLFNSLSYNVRESMEGVLGVRTYIPRTKKLEDFRVRWKRKFLSDNPTLVDTNLNIFGIWAYDATIALAMAIEEVGIGATKFGYNESNTSSNYYMPDFEKFGISQNGEKLSEALSNTRFNGLSGDFDVVGGKLQASIYEIINVIGDGEKRVGFWTPNKGLSRNLDTEGLIGNNNMYSSSKNDLGSIIWPGDMYSIPKGWEIPTIGKKLRIGVPVKNGFNYTEFLKVTYDPSTNSTQATGFCIDIFKAVLDVLPYALPYDFVRFAKPDGEMAGTYNELIAQLYDGVTSSSHIISSPKFDAVVGDITITASRSNYVDFTMPYTESGVTMVVSMKDNRKKNAWAFLKPLTWDLWVTSACSFVFIGFVVWVLEHRINNDFRGPLSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWVFVVLILVQSYTASLTSLLTVEQLRPAITDVHQLLKNKMNVGYLKGSFVYGILKDLGFEDSHLITYQSAEECNELFIKGSVNGGIDAAFDEVPYIKHFLGTYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGDKMKTIENAWLKKTSCLDSNTEISSNNSLGLESFWGLFLIAGIASLLALVIFVITFLYQHKHIWLPNSPSTSIWRRIRVLVMIFDQRDLNSHTFKKSGNKNESSKSPHHDDLGAVEASPGTHCPPSPFSQTESNVSLNDDFSPNTELDVVQITNQEVSPVNNCESNPQAT*