AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0282170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282170 MtrunA17_Chr2g0296881 95.925 319 13 0 1 319 1 319 0.0 639
Msa0282170 MtrunA17_Chr2g0296871 81.875 320 52 2 1 319 1 315 0.0 546
Msa0282170 MtrunA17_Chr2g0296891 82.680 306 52 1 15 319 19 324 0.0 536
Msa0282170 MtrunA17_Chr4g0013751 27.758 281 162 9 22 280 521 782 7.18e-23 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282170 AT1G30910.1 58.278 302 123 2 17 318 19 317 2.37e-133 382
Msa0282170 AT5G44720.1 55.592 304 132 3 18 319 6 308 7.42e-126 362
Msa0282170 AT5G44720.2 57.080 226 96 1 18 243 6 230 2.08e-95 282
Msa0282170 AT1G16540.1 26.923 286 170 8 15 280 527 793 6.83e-25 105
Msa0282170 AT1G16540.3 25.649 308 185 6 15 280 527 832 1.14e-23 102

Find 94 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTCTCATGTGAATATT+TGG 0.099769 2_3:-17966487 None:intergenic
ACCTACCACTGATTCCTTTA+TGG 0.111647 2_3:+17963130 Msa0282170:CDS
CAGTGGTTCTCGGATTATTT+AGG 0.225492 2_3:+17965151 Msa0282170:CDS
AAACAGGATCTCCCAATTTA+AGG 0.238470 2_3:-17966282 None:intergenic
TTATTTATTTGATAGGATTT+AGG 0.244866 2_3:+17962988 Msa0282170:intron
AGCAGAAGCAGCTGCTTAAA+AGG 0.253967 2_3:+17966330 Msa0282170:exon
CAAATATTCACATGAGAATA+AGG 0.265942 2_3:+17966488 Msa0282170:three_prime_UTR
CCTACCACTGATTCCTTTAT+GGG 0.268886 2_3:+17963131 Msa0282170:CDS
GAATGCATGTGTAAAATAAT+TGG 0.292005 2_3:-17966585 None:intergenic
CGGATAGCCATCACTGAAAA+AGG 0.301036 2_3:-17965453 None:intergenic
GGATGGAAAAGTCCTTAAAT+TGG 0.317212 2_3:+17966270 Msa0282170:CDS
TGCGGTCCCTCGACATAATC+AGG 0.317256 2_3:-17965425 None:intergenic
GGATGGAATCTTCTTCTATA+GGG 0.319739 2_3:+17966248 Msa0282170:CDS
TCAAGTTCCACTCACTCCTT+CGG 0.333536 2_3:+17962881 Msa0282170:CDS
TTACTACTTTCAGGAATCAT+TGG 0.337495 2_3:+17965563 Msa0282170:intron
TGGATGGAATCTTCTTCTAT+AGG 0.343078 2_3:+17966247 Msa0282170:CDS
GCTGTCTCTTGATTGATTGT+TGG 0.352501 2_3:-17966030 None:intergenic
TTTAGGAAATCCTACTAAAC+TGG 0.354779 2_3:+17965168 Msa0282170:CDS
ATTCCACGGCATGACTTAAC+AGG 0.374221 2_3:-17962849 None:intergenic
AATATGTAAAATACCCATAA+AGG 0.377071 2_3:-17963144 None:intergenic
AAATGTGATGTTTAAAGTTT+CGG 0.377620 2_3:+17962661 Msa0282170:five_prime_UTR
CAAGTTCCACTCACTCCTTC+GGG 0.382382 2_3:+17962882 Msa0282170:CDS
ACACCTGAAGCTAAAGTTAC+AGG 0.385335 2_3:+17962813 Msa0282170:CDS
ACCTCAACCAAAGCAAGCTT+TGG 0.385439 2_3:-17963071 None:intergenic
ATGAAACTCTCATGAAATAT+AGG 0.390337 2_3:+17966073 Msa0282170:CDS
TGGATGGTTGTGAATTCAAA+AGG 0.399082 2_3:+17963023 Msa0282170:CDS
GGGAATGGACTGGCTCTGCT+TGG 0.402728 2_3:+17965107 Msa0282170:CDS
AAACTGGTCCGCTTCAATAC+TGG 0.403839 2_3:+17965184 Msa0282170:CDS
AGTTGAACCAAAGCTTGCTT+TGG 0.418513 2_3:+17963064 Msa0282170:CDS
CTGAAACGATTCATAAGTAT+TGG 0.421132 2_3:-17965612 None:intergenic
CGAAGCATCGCAGTGGTTCT+CGG 0.425681 2_3:+17965141 Msa0282170:CDS
CTCCATAGGTCTTCAGAATA+CGG 0.426148 2_3:-17965757 None:intergenic
ATGCCTGTAACTTTAGCTTC+AGG 0.433437 2_3:-17962816 None:intergenic
TGCAAATGCTATAAATAGCT+TGG 0.435196 2_3:-17962691 None:intergenic
TATCATCTGGTCTTATGACT+TGG 0.439021 2_3:-17966101 None:intergenic
TTGAAGCGGACCAGTTTAGT+AGG 0.456113 2_3:-17965178 None:intergenic
GTCATGATATAGTGTGGAAC+TGG 0.465897 2_3:+17966227 Msa0282170:CDS
GGAATGGACTGGCTCTGCTT+GGG 0.467842 2_3:+17965108 Msa0282170:CDS
CTTGTGTTGCAGGTCTACTT+TGG 0.472504 2_3:+17966205 Msa0282170:intron
TATTTCATGAGAGTTTCATT+TGG 0.483242 2_3:-17966069 None:intergenic
GATGGAAAAGTCCTTAAATT+GGG 0.484488 2_3:+17966271 Msa0282170:CDS
AATCAAGAGACAGCAAAAGT+TGG 0.492806 2_3:+17966039 Msa0282170:CDS
TGGTGCAGTATCCTTGTTGA+AGG 0.496143 2_3:+17965727 Msa0282170:intron
ACTTTGAGAGGTTCCATCCC+TGG 0.496805 2_3:-17965040 None:intergenic
GTTACAGTGCTGAAAGCACC+AGG 0.502114 2_3:+17965022 Msa0282170:intron
TAGGTGGGATAGACAATGGA+TGG 0.502735 2_3:+17963007 Msa0282170:CDS
TCCGTACTTAATCGCATCTC+AGG 0.502861 2_3:+17965472 Msa0282170:CDS
AACCGTATTCTGAAGACCTA+TGG 0.503411 2_3:+17965755 Msa0282170:CDS
ACTCTCATGAAATATAGGTC+TGG 0.506523 2_3:+17966078 Msa0282170:CDS
ATGATATTACAGTGTGGGAA+TGG 0.509064 2_3:+17965092 Msa0282170:CDS
GAAATTAAGTGATTATTACA+TGG 0.516605 2_3:+17966400 Msa0282170:three_prime_UTR
CAAGCTGTGTTACCGTTGTA+AGG 0.522106 2_3:+17965816 Msa0282170:CDS
TTTATTTGATAGGATTTAGG+TGG 0.525152 2_3:+17962991 Msa0282170:intron
CGAGAACCACTGCGATGCTT+CGG 0.528277 2_3:-17965140 None:intergenic
CAGTGTTCATCAAAAGCCTC+AGG 0.529540 2_3:-17963104 None:intergenic
ACCAAAGCTTGCTTTGGTTG+AGG 0.529657 2_3:+17963070 Msa0282170:CDS
TTATCTTGAAATCTCTCCAT+AGG 0.544511 2_3:-17965771 None:intergenic
ACCTGAGATGCGATTAAGTA+CGG 0.548607 2_3:-17965473 None:intergenic
GAATCTTCTTCTATAGGGGA+TGG 0.549698 2_3:+17966253 Msa0282170:CDS
TTATTTGATAGGATTTAGGT+GGG 0.556843 2_3:+17962992 Msa0282170:intron
TAAACATCACATTTCACATG+AGG 0.557206 2_3:-17962652 None:intergenic
ACTGGCTCTGCTTGGGACGA+AGG 0.560194 2_3:+17965115 Msa0282170:CDS
TGAGGTTGAATTCCCACCTG+AGG 0.566023 2_3:+17963088 Msa0282170:CDS
AGCAGATGATATTACAGTGT+GGG 0.567461 2_3:+17965087 Msa0282170:CDS
GGATGGTTGTGAATTCAAAA+GGG 0.567997 2_3:+17963024 Msa0282170:CDS
GATTTAGGTGGGATAGACAA+TGG 0.568641 2_3:+17963003 Msa0282170:CDS
TTATCAAATATTAGTATCAG+TGG 0.570428 2_3:+17966370 Msa0282170:three_prime_UTR
CTTACAACGGTAACACAGCT+TGG 0.581977 2_3:-17965815 None:intergenic
AACATCACATTTCACATGAG+GGG 0.585000 2_3:-17962650 None:intergenic
AAACATCACATTTCACATGA+GGG 0.586272 2_3:-17962651 None:intergenic
GATGGAATCTTCTTCTATAG+GGG 0.591895 2_3:+17966249 Msa0282170:CDS
TTGTTCAAACAAACTTTGAG+AGG 0.593649 2_3:-17965052 None:intergenic
AGTGCTGAAAGCACCAGGGA+TGG 0.596777 2_3:+17965027 Msa0282170:intron
ATGATACCCGAAGGAGTGAG+TGG 0.598807 2_3:-17962888 None:intergenic
TGTTCATCAAAAGCCTCAGG+TGG 0.613034 2_3:-17963101 None:intergenic
CCCATAAAGGAATCAGTGGT+AGG 0.613095 2_3:-17963131 None:intergenic
AATACCCATAAAGGAATCAG+TGG 0.615368 2_3:-17963135 None:intergenic
TGATATAGTGTGGAACTGGA+TGG 0.619389 2_3:+17966231 Msa0282170:CDS
GTAGACCCTGATTATGTCGA+GGG 0.620165 2_3:+17965419 Msa0282170:CDS
AGATGTTACCAGTATTGAAG+CGG 0.621179 2_3:-17965192 None:intergenic
GCGGTCCCTCGACATAATCA+GGG 0.622792 2_3:-17965424 None:intergenic
GAAAATATAACACAAATGAA+AGG 0.624588 2_3:-17966533 None:intergenic
TGCACTAAACGAGCTTCTAG+AGG 0.628214 2_3:+17965587 Msa0282170:CDS
CTTGAGAAAGTGAAATTCCA+CGG 0.628894 2_3:-17962863 None:intergenic
TATCCTGTTAAGTCATGCCG+TGG 0.637857 2_3:+17962846 Msa0282170:CDS
ACTTTGGTCATGATATAGTG+TGG 0.638612 2_3:+17966221 Msa0282170:CDS
AGTAGACCCTGATTATGTCG+AGG 0.644567 2_3:+17965418 Msa0282170:CDS
ATTACAGTGTGGGAATGGAC+TGG 0.653012 2_3:+17965097 Msa0282170:CDS
GTTCATCAAAAGCCTCAGGT+GGG 0.673084 2_3:-17963100 None:intergenic
ACGGTTCACAACCTTCAACA+AGG 0.676913 2_3:-17965738 None:intergenic
AAGGAGCCGAAGCATCGCAG+TGG 0.695660 2_3:+17965134 Msa0282170:CDS
TAGCAGATGATATTACAGTG+TGG 0.696993 2_3:+17965086 Msa0282170:CDS
ACTATAGTAGTAGTGTTACG+TGG 0.760881 2_3:+17962627 None:intergenic
TTACAGTGCTGAAAGCACCA+GGG 0.762056 2_3:+17965023 Msa0282170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAATTTATTTATTTGAT+AGG + chr2_3:17962981-17963000 Msa0282170:intron 10.0%
!!! TAAGATGATATTTTTATATT+TGG + chr2_3:17963595-17963614 Msa0282170:intron 10.0%
!! TTATTTATTTGATAGGATTT+AGG + chr2_3:17962988-17963007 Msa0282170:intron 15.0%
!!! TGTTTTACTTGAATAAATAA+TGG + chr2_3:17963195-17963214 Msa0282170:intron 15.0%
!!! TTTTCATAATTTTATCACAA+AGG - chr2_3:17964717-17964736 None:intergenic 15.0%
!!! TTAATTTTTTTGTTTTCTCA+TGG - chr2_3:17964908-17964927 None:intergenic 15.0%
!!! AAATGTGATGTTTAAAGTTT+CGG + chr2_3:17962661-17962680 Msa0282170:five_prime_UTR 20.0%
!!! TAAGTTTTATCTTTTGTTGT+TGG - chr2_3:17962736-17962755 None:intergenic 20.0%
!! AATATGTAAAATACCCATAA+AGG - chr2_3:17963147-17963166 None:intergenic 20.0%
!!! TCATTGACATTTTTTATCAA+AGG + chr2_3:17964079-17964098 Msa0282170:intron 20.0%
!!! TTTTGTTTGCTTATCATAAA+AGG + chr2_3:17964444-17964463 Msa0282170:intron 20.0%
!!! ATTTGTTTTACATCTTCTAT+TGG - chr2_3:17964496-17964515 None:intergenic 20.0%
!!! ATTATTGATGATGCTTATTA+TGG + chr2_3:17966000-17966019 Msa0282170:intron 20.0%
!! AGATGATAGAAACAAAAAAA+GGG + chr2_3:17966116-17966135 Msa0282170:CDS 20.0%
!!! AACTTTTTGATAACATAAAC+AGG - chr2_3:17966301-17966320 None:intergenic 20.0%
!! TTATCAAATATTAGTATCAG+TGG + chr2_3:17966370-17966389 Msa0282170:three_prime_UTR 20.0%
!! GAAATTAAGTGATTATTACA+TGG + chr2_3:17966400-17966419 Msa0282170:three_prime_UTR 20.0%
!! GAAAATATAACACAAATGAA+AGG - chr2_3:17966536-17966555 None:intergenic 20.0%
! TTTATTTGATAGGATTTAGG+TGG + chr2_3:17962991-17963010 Msa0282170:intron 25.0%
! TTATTTGATAGGATTTAGGT+GGG + chr2_3:17962992-17963011 Msa0282170:intron 25.0%
! TTTGATGAAGTAAACCTTTA+TGG + chr2_3:17963494-17963513 Msa0282170:intron 25.0%
! TTGATGAAGTAAACCTTTAT+GGG + chr2_3:17963495-17963514 Msa0282170:intron 25.0%
! AATACTTAGCACAAATAACA+TGG - chr2_3:17963864-17963883 None:intergenic 25.0%
!! GAAGGCTGTAAATATATTTT+TGG - chr2_3:17964315-17964334 None:intergenic 25.0%
! TTATGATAAGCAAACAAAAC+AGG - chr2_3:17964443-17964462 None:intergenic 25.0%
!! AATTTTATCACAAAGGCTTA+TGG - chr2_3:17964710-17964729 None:intergenic 25.0%
!!! TAACATCTTTGAAACCTTAA+CGG + chr2_3:17965207-17965226 Msa0282170:intron 25.0%
! GCATGAAAACATTAATACTT+GGG - chr2_3:17965639-17965658 None:intergenic 25.0%
!! ATAAGCAGTTTTTCATTTCA+GGG + chr2_3:17965790-17965809 Msa0282170:CDS 25.0%
! TATTTCATGAGAGTTTCATT+TGG - chr2_3:17966072-17966091 None:intergenic 25.0%
! ATGAAACTCTCATGAAATAT+AGG + chr2_3:17966073-17966092 Msa0282170:CDS 25.0%
!!! CTTTTTTTGTTTCTATCATC+TGG - chr2_3:17966117-17966136 None:intergenic 25.0%
! CAGATGATAGAAACAAAAAA+AGG + chr2_3:17966115-17966134 Msa0282170:CDS 25.0%
!! AAAATGTACCTTTTGTTCAT+TGG + chr2_3:17966168-17966187 Msa0282170:intron 25.0%
! CTTATTCTCATGTGAATATT+TGG - chr2_3:17966490-17966509 None:intergenic 25.0%
! CAAATATTCACATGAGAATA+AGG + chr2_3:17966488-17966507 Msa0282170:three_prime_UTR 25.0%
! GAATGCATGTGTAAAATAAT+TGG - chr2_3:17966588-17966607 None:intergenic 25.0%
!! TATTTTACACATGCATTCAA+TGG + chr2_3:17966590-17966609 Msa0282170:three_prime_UTR 25.0%
AAACATCACATTTCACATGA+GGG - chr2_3:17962654-17962673 None:intergenic 30.0%
TAAACATCACATTTCACATG+AGG - chr2_3:17962655-17962674 None:intergenic 30.0%
TGCAAATGCTATAAATAGCT+TGG - chr2_3:17962694-17962713 None:intergenic 30.0%
AAAAAGAATATGATACCCGA+AGG - chr2_3:17962900-17962919 None:intergenic 30.0%
GTCTCACATTAAATGAGATA+AGG + chr2_3:17963230-17963249 Msa0282170:intron 30.0%
ACATTAAATGAGATAAGGTC+CGG + chr2_3:17963235-17963254 Msa0282170:intron 30.0%
GACCAGATTCTTAAAAGTTT+GGG - chr2_3:17963311-17963330 None:intergenic 30.0%
AGACCAGATTCTTAAAAGTT+TGG - chr2_3:17963312-17963331 None:intergenic 30.0%
AATCAAAACCATGACAACAT+GGG - chr2_3:17963446-17963465 None:intergenic 30.0%
AAATCAAAACCATGACAACA+TGG - chr2_3:17963447-17963466 None:intergenic 30.0%
TTAATCAACATGACCCATAA+AGG - chr2_3:17963511-17963530 None:intergenic 30.0%
AAAGGCTAACTTATGTCTTT+AGG - chr2_3:17963635-17963654 None:intergenic 30.0%
! AAGATCTGGAGTACATTTAA+AGG - chr2_3:17963663-17963682 None:intergenic 30.0%
AATTAATGCCTTTCAAGATC+TGG - chr2_3:17963677-17963696 None:intergenic 30.0%
GAAATTAGTGATGTTACATG+TGG + chr2_3:17963755-17963774 Msa0282170:intron 30.0%
TGGATAGAAAAAACATGGTT+GGG - chr2_3:17963945-17963964 None:intergenic 30.0%
CTTTGTGGATAGAAAAAACA+TGG - chr2_3:17963950-17963969 None:intergenic 30.0%
! TTTTCTATCCACAAAGATAG+AGG + chr2_3:17963954-17963973 Msa0282170:intron 30.0%
CAAAATTACCTCTATCTTTG+TGG - chr2_3:17963965-17963984 None:intergenic 30.0%
!! AGATAGAGGTAATTTTGAAG+TGG + chr2_3:17963968-17963987 Msa0282170:intron 30.0%
!!! GATAGAGGTAATTTTGAAGT+GGG + chr2_3:17963969-17963988 Msa0282170:intron 30.0%
TAAACACGACATTGATAAGT+TGG - chr2_3:17964195-17964214 None:intergenic 30.0%
AGTATATCCTTTCAAAGTAG+TGG + chr2_3:17964404-17964423 Msa0282170:intron 30.0%
!! TCATTTTGAAAATGACAAGG+AGG - chr2_3:17964582-17964601 None:intergenic 30.0%
!! CACTCATTTTGAAAATGACA+AGG - chr2_3:17964585-17964604 None:intergenic 30.0%
!! AATCACTTGCTTAATTTGTG+GGG - chr2_3:17964631-17964650 None:intergenic 30.0%
!! CAATCACTTGCTTAATTTGT+GGG - chr2_3:17964632-17964651 None:intergenic 30.0%
! TCAATCACTTGCTTAATTTG+TGG - chr2_3:17964633-17964652 None:intergenic 30.0%
GCTGAGAAGAAGTTAAAAAT+AGG - chr2_3:17964680-17964699 None:intergenic 30.0%
ACTTATCACTGAAGAGTTTA+TGG - chr2_3:17964773-17964792 None:intergenic 30.0%
GTTTGAATTGAATGTACATG+TGG - chr2_3:17964828-17964847 None:intergenic 30.0%
TTGTTCAAACAAACTTTGAG+AGG - chr2_3:17965055-17965074 None:intergenic 30.0%
TTTAGGAAATCCTACTAAAC+TGG + chr2_3:17965168-17965187 Msa0282170:CDS 30.0%
!!! TGCTGTTTTATTATCCGTTA+AGG - chr2_3:17965224-17965243 None:intergenic 30.0%
ACATTATTTGAGAGTTATCG+TGG - chr2_3:17965370-17965389 None:intergenic 30.0%
TGATTCCTGAAAGTAGTAAA+TGG - chr2_3:17965562-17965581 None:intergenic 30.0%
TTACTACTTTCAGGAATCAT+TGG + chr2_3:17965563-17965582 Msa0282170:intron 30.0%
CTGAAACGATTCATAAGTAT+TGG - chr2_3:17965615-17965634 None:intergenic 30.0%
GGCATGAAAACATTAATACT+TGG - chr2_3:17965640-17965659 None:intergenic 30.0%
TTATCTTGAAATCTCTCCAT+AGG - chr2_3:17965774-17965793 None:intergenic 30.0%
! GATAAGCAGTTTTTCATTTC+AGG + chr2_3:17965789-17965808 Msa0282170:CDS 30.0%
! TAGAAGTTTTCACCTTACAA+CGG - chr2_3:17965831-17965850 None:intergenic 30.0%
GATGGAAAAGTCCTTAAATT+GGG + chr2_3:17966271-17966290 Msa0282170:CDS 30.0%
AACATCACATTTCACATGAG+GGG - chr2_3:17962653-17962672 None:intergenic 35.0%
CTTGAGAAAGTGAAATTCCA+CGG - chr2_3:17962866-17962885 None:intergenic 35.0%
TGGATGGTTGTGAATTCAAA+AGG + chr2_3:17963023-17963042 Msa0282170:CDS 35.0%
GGATGGTTGTGAATTCAAAA+GGG + chr2_3:17963024-17963043 Msa0282170:CDS 35.0%
AATACCCATAAAGGAATCAG+TGG - chr2_3:17963138-17963157 None:intergenic 35.0%
! GTCCGGACATAAGTTTTTAA+GGG + chr2_3:17963252-17963271 Msa0282170:intron 35.0%
!! TCCGGACATAAGTTTTTAAG+GGG + chr2_3:17963253-17963272 Msa0282170:intron 35.0%
GATTCTTAAAAGTTTGGGTC+TGG - chr2_3:17963306-17963325 None:intergenic 35.0%
!! GACCCAAACTTTTAAGAATC+TGG + chr2_3:17963306-17963325 Msa0282170:intron 35.0%
!! TTTTAAGAATCTGGTCTGAG+TGG + chr2_3:17963315-17963334 Msa0282170:intron 35.0%
ATCAAAACCATGACAACATG+GGG - chr2_3:17963445-17963464 None:intergenic 35.0%
GTACATTTAAAGGTTGGGAA+AGG - chr2_3:17963653-17963672 None:intergenic 35.0%
CTGGAGTACATTTAAAGGTT+GGG - chr2_3:17963658-17963677 None:intergenic 35.0%
! TCTGGAGTACATTTAAAGGT+TGG - chr2_3:17963659-17963678 None:intergenic 35.0%
AATGTACTCCAGATCTTGAA+AGG + chr2_3:17963666-17963685 Msa0282170:intron 35.0%
CTAATCCATGTCATGTTTCA+TGG - chr2_3:17963785-17963804 None:intergenic 35.0%
CATGAAACATGACATGGATT+AGG + chr2_3:17963783-17963802 Msa0282170:intron 35.0%
ATAGAAAAAACATGGTTGGG+AGG - chr2_3:17963942-17963961 None:intergenic 35.0%
GTGGATAGAAAAAACATGGT+TGG - chr2_3:17963946-17963965 None:intergenic 35.0%
! ACAGCCAATGATGTTGATTA+GGG - chr2_3:17963998-17964017 None:intergenic 35.0%
TCGATAAAAGAGACTAACAC+AGG + chr2_3:17964268-17964287 Msa0282170:intron 35.0%
! AGCCTTCTAGTTAATTCCAA+GGG + chr2_3:17964328-17964347 Msa0282170:intron 35.0%
AAAAGACAGATGTTACAGCT+GGG + chr2_3:17964371-17964390 Msa0282170:intron 35.0%
GATAGTTCCACTACTTTGAA+AGG - chr2_3:17964414-17964433 None:intergenic 35.0%
TAACTCAAACAACAGTCAGA+AGG - chr2_3:17964871-17964890 None:intergenic 35.0%
TAGCAGATGATATTACAGTG+TGG + chr2_3:17965086-17965105 Msa0282170:CDS 35.0%
AGCAGATGATATTACAGTGT+GGG + chr2_3:17965087-17965106 Msa0282170:CDS 35.0%
ATGATATTACAGTGTGGGAA+TGG + chr2_3:17965092-17965111 Msa0282170:CDS 35.0%
! AGATGTTACCAGTATTGAAG+CGG - chr2_3:17965195-17965214 None:intergenic 35.0%
CAGCACTAACAATGTTAAGA+AGG + chr2_3:17965239-17965258 Msa0282170:intron 35.0%
CATATGCATGTAATGCACAA+TGG + chr2_3:17965305-17965324 Msa0282170:intron 35.0%
! ACTTGCCATTTACTACTTTC+AGG + chr2_3:17965554-17965573 Msa0282170:intron 35.0%
CTATGAAACACTAGACACAA+AGG - chr2_3:17965661-17965680 None:intergenic 35.0%
AAACCAACCAGTCAATTGAA+CGG - chr2_3:17965926-17965945 None:intergenic 35.0%
AATCAAGAGACAGCAAAAGT+TGG + chr2_3:17966039-17966058 Msa0282170:CDS 35.0%
ACTCTCATGAAATATAGGTC+TGG + chr2_3:17966078-17966097 Msa0282170:CDS 35.0%
!! TATCATCTGGTCTTATGACT+TGG - chr2_3:17966104-17966123 None:intergenic 35.0%
ACATGTCACCAATGAACAAA+AGG - chr2_3:17966179-17966198 None:intergenic 35.0%
ACTTTGGTCATGATATAGTG+TGG + chr2_3:17966221-17966240 Msa0282170:CDS 35.0%
TGGATGGAATCTTCTTCTAT+AGG + chr2_3:17966247-17966266 Msa0282170:CDS 35.0%
GGATGGAATCTTCTTCTATA+GGG + chr2_3:17966248-17966267 Msa0282170:CDS 35.0%
GATGGAATCTTCTTCTATAG+GGG + chr2_3:17966249-17966268 Msa0282170:CDS 35.0%
GGATGGAAAAGTCCTTAAAT+TGG + chr2_3:17966270-17966289 Msa0282170:CDS 35.0%
AAACAGGATCTCCCAATTTA+AGG - chr2_3:17966285-17966304 None:intergenic 35.0%
ACACCTGAAGCTAAAGTTAC+AGG + chr2_3:17962813-17962832 Msa0282170:CDS 40.0%
! ATGCCTGTAACTTTAGCTTC+AGG - chr2_3:17962819-17962838 None:intergenic 40.0%
GATTTAGGTGGGATAGACAA+TGG + chr2_3:17963003-17963022 Msa0282170:CDS 40.0%
! AGTTGAACCAAAGCTTGCTT+TGG + chr2_3:17963064-17963083 Msa0282170:CDS 40.0%
! TGAGGCTTTTGATGAACACT+GGG + chr2_3:17963106-17963125 Msa0282170:CDS 40.0%
!! ACCTACCACTGATTCCTTTA+TGG + chr2_3:17963130-17963149 Msa0282170:CDS 40.0%
!! CCTACCACTGATTCCTTTAT+GGG + chr2_3:17963131-17963150 Msa0282170:CDS 40.0%
! GGTCCGGACATAAGTTTTTA+AGG + chr2_3:17963251-17963270 Msa0282170:intron 40.0%
CCCCCTTAAAAACTTATGTC+CGG - chr2_3:17963257-17963276 None:intergenic 40.0%
!! CCGGACATAAGTTTTTAAGG+GGG + chr2_3:17963254-17963273 Msa0282170:intron 40.0%
!! ATAAGTTTTTAAGGGGGAGC+TGG + chr2_3:17963260-17963279 Msa0282170:intron 40.0%
! GTGGTCATGAGTTTGATTTC+TGG + chr2_3:17963361-17963380 Msa0282170:intron 40.0%
TCAAAACCATGACAACATGG+GGG - chr2_3:17963444-17963463 None:intergenic 40.0%
GAATGCCATGAAACATGACA+TGG + chr2_3:17963777-17963796 Msa0282170:intron 40.0%
!! ACATGACATGGATTAGGTGT+AGG + chr2_3:17963789-17963808 Msa0282170:intron 40.0%
!! CATGACATGGATTAGGTGTA+GGG + chr2_3:17963790-17963809 Msa0282170:intron 40.0%
! TGTCACCGACTAATCTTTGT+TGG + chr2_3:17963893-17963912 Msa0282170:intron 40.0%
! GTCACCGACTAATCTTTGTT+GGG + chr2_3:17963894-17963913 Msa0282170:intron 40.0%
GTCACCCAACAAAGATTAGT+CGG - chr2_3:17963901-17963920 None:intergenic 40.0%
GCATCCCTAATCAACATCAT+TGG + chr2_3:17963991-17964010 Msa0282170:intron 40.0%
! GACAGCCAATGATGTTGATT+AGG - chr2_3:17963999-17964018 None:intergenic 40.0%
ATTGGCTGTCATTACACACA+TGG + chr2_3:17964009-17964028 Msa0282170:intron 40.0%
! CGACATTGATAAGTTGGCAA+CGG - chr2_3:17964189-17964208 None:intergenic 40.0%
! CAGCCTTCTAGTTAATTCCA+AGG + chr2_3:17964327-17964346 Msa0282170:intron 40.0%
! GCCTTCTAGTTAATTCCAAG+GGG + chr2_3:17964329-17964348 Msa0282170:intron 40.0%
TCCCCTTGGAATTAACTAGA+AGG - chr2_3:17964333-17964352 None:intergenic 40.0%
!! CTAACATAGCTTTTTCCCCT+TGG - chr2_3:17964347-17964366 None:intergenic 40.0%
GAAAAGACAGATGTTACAGC+TGG + chr2_3:17964370-17964389 Msa0282170:intron 40.0%
!! CAGTCAGAAGGATAGTTTTG+AGG - chr2_3:17964859-17964878 None:intergenic 40.0%
TTTCCATGATCATGATCGCA+TGG + chr2_3:17964964-17964983 Msa0282170:intron 40.0%
AAACCATGCGATCATGATCA+TGG - chr2_3:17964970-17964989 None:intergenic 40.0%
CAGTGGTTCTCGGATTATTT+AGG + chr2_3:17965151-17965170 Msa0282170:CDS 40.0%
!! CTAACTTCTGAAGCTGCAAT+TGG - chr2_3:17965395-17965414 None:intergenic 40.0%
ACCTGAGATGCGATTAAGTA+CGG - chr2_3:17965476-17965495 None:intergenic 40.0%
! AGATCACGCGATTGAGATTT+TGG + chr2_3:17965697-17965716 Msa0282170:intron 40.0%
!!! ATTGAGATTTTGGTGCCATG+TGG + chr2_3:17965707-17965726 Msa0282170:intron 40.0%
! AACCGTATTCTGAAGACCTA+TGG + chr2_3:17965755-17965774 Msa0282170:CDS 40.0%
CTCCATAGGTCTTCAGAATA+CGG - chr2_3:17965760-17965779 None:intergenic 40.0%
AAAAAGCGATCTGAACCAAC+CGG + chr2_3:17965879-17965898 Msa0282170:intron 40.0%
!! TTGACTGGTTGGTTTGATCT+CGG + chr2_3:17965931-17965950 Msa0282170:intron 40.0%
GCTGTCTCTTGATTGATTGT+TGG - chr2_3:17966033-17966052 None:intergenic 40.0%
ATGTGAAATGCTTGTGTTGC+AGG + chr2_3:17966195-17966214 Msa0282170:intron 40.0%
GTCATGATATAGTGTGGAAC+TGG + chr2_3:17966227-17966246 Msa0282170:CDS 40.0%
TGATATAGTGTGGAACTGGA+TGG + chr2_3:17966231-17966250 Msa0282170:CDS 40.0%
GAATCTTCTTCTATAGGGGA+TGG + chr2_3:17966253-17966272 Msa0282170:CDS 40.0%
TATCCTGTTAAGTCATGCCG+TGG + chr2_3:17962846-17962865 Msa0282170:CDS 45.0%
ATTCCACGGCATGACTTAAC+AGG - chr2_3:17962852-17962871 None:intergenic 45.0%
TCAAGTTCCACTCACTCCTT+CGG + chr2_3:17962881-17962900 Msa0282170:CDS 45.0%
TAGGTGGGATAGACAATGGA+TGG + chr2_3:17963007-17963026 Msa0282170:CDS 45.0%
! ACCAAAGCTTGCTTTGGTTG+AGG + chr2_3:17963070-17963089 Msa0282170:CDS 45.0%
ACCTCAACCAAAGCAAGCTT+TGG - chr2_3:17963074-17963093 None:intergenic 45.0%
GTTCATCAAAAGCCTCAGGT+GGG - chr2_3:17963103-17963122 None:intergenic 45.0%
TGTTCATCAAAAGCCTCAGG+TGG - chr2_3:17963104-17963123 None:intergenic 45.0%
CAGTGTTCATCAAAAGCCTC+AGG - chr2_3:17963107-17963126 None:intergenic 45.0%
! CTGAGGCTTTTGATGAACAC+TGG + chr2_3:17963105-17963124 Msa0282170:CDS 45.0%
CCCATAAAGGAATCAGTGGT+AGG - chr2_3:17963134-17963153 None:intergenic 45.0%
!! ACATGGATTAGGTGTAGGGA+AGG + chr2_3:17963794-17963813 Msa0282170:intron 45.0%
!! CATGGATTAGGTGTAGGGAA+GGG + chr2_3:17963795-17963814 Msa0282170:intron 45.0%
!! ATGGATTAGGTGTAGGGAAG+GGG + chr2_3:17963796-17963815 Msa0282170:intron 45.0%
GTTGGGTGACAACCTTTAGA+AGG + chr2_3:17963911-17963930 Msa0282170:intron 45.0%
ACCATCAATCCCTACGTCAA+TGG + chr2_3:17964033-17964052 Msa0282170:intron 45.0%
ACCATTGACGTAGGGATTGA+TGG - chr2_3:17964037-17964056 None:intergenic 45.0%
TATGCGTCACCATTGACGTA+GGG - chr2_3:17964045-17964064 None:intergenic 45.0%
ATATGCGTCACCATTGACGT+AGG - chr2_3:17964046-17964065 None:intergenic 45.0%
!! TTACAGTGCTGAAAGCACCA+GGG + chr2_3:17965023-17965042 Msa0282170:intron 45.0%
ATTACAGTGTGGGAATGGAC+TGG + chr2_3:17965097-17965116 Msa0282170:CDS 45.0%
TTGAAGCGGACCAGTTTAGT+AGG - chr2_3:17965181-17965200 None:intergenic 45.0%
AAACTGGTCCGCTTCAATAC+TGG + chr2_3:17965184-17965203 Msa0282170:CDS 45.0%
TGTCATGCACAACGTGTCTA+CGG - chr2_3:17965340-17965359 None:intergenic 45.0%
AGTAGACCCTGATTATGTCG+AGG + chr2_3:17965418-17965437 Msa0282170:CDS 45.0%
GTAGACCCTGATTATGTCGA+GGG + chr2_3:17965419-17965438 Msa0282170:CDS 45.0%
TCACTGAAAAAGGTCTGGTG+CGG - chr2_3:17965446-17965465 None:intergenic 45.0%
!!! CACCAGACCTTTTTCAGTGA+TGG + chr2_3:17965446-17965465 Msa0282170:CDS 45.0%
AGCCATCACTGAAAAAGGTC+TGG - chr2_3:17965451-17965470 None:intergenic 45.0%
CGGATAGCCATCACTGAAAA+AGG - chr2_3:17965456-17965475 None:intergenic 45.0%
TCCGTACTTAATCGCATCTC+AGG + chr2_3:17965472-17965491 Msa0282170:CDS 45.0%
! CTTTGTTTCCCAACTGCAAC+TGG - chr2_3:17965503-17965522 None:intergenic 45.0%
TGCACTAAACGAGCTTCTAG+AGG + chr2_3:17965587-17965606 Msa0282170:CDS 45.0%
AACAAGGATACTGCACCACA+TGG - chr2_3:17965725-17965744 None:intergenic 45.0%
TGGTGCAGTATCCTTGTTGA+AGG + chr2_3:17965727-17965746 Msa0282170:intron 45.0%
ACGGTTCACAACCTTCAACA+AGG - chr2_3:17965741-17965760 None:intergenic 45.0%
CTTACAACGGTAACACAGCT+TGG - chr2_3:17965818-17965837 None:intergenic 45.0%
CAAGCTGTGTTACCGTTGTA+AGG + chr2_3:17965816-17965835 Msa0282170:CDS 45.0%
! GTTCAATAGGTTGAACCGGT+TGG - chr2_3:17965897-17965916 None:intergenic 45.0%
! CCTGGTTCAATAGGTTGAAC+CGG - chr2_3:17965901-17965920 None:intergenic 45.0%
TGAACGGTTCCTGGTTCAAT+AGG - chr2_3:17965910-17965929 None:intergenic 45.0%
GAACCGTTCAATTGACTGGT+TGG + chr2_3:17965920-17965939 Msa0282170:intron 45.0%
CTTGTGTTGCAGGTCTACTT+TGG + chr2_3:17966205-17966224 Msa0282170:intron 45.0%
! TTTTAAGCAGCTGCTTCTGC+TGG - chr2_3:17966331-17966350 None:intergenic 45.0%
AGCAGAAGCAGCTGCTTAAA+AGG + chr2_3:17966330-17966349 Msa0282170:exon 45.0%
CAAGTTCCACTCACTCCTTC+GGG + chr2_3:17962882-17962901 Msa0282170:CDS 50.0%
ATGATACCCGAAGGAGTGAG+TGG - chr2_3:17962891-17962910 None:intergenic 50.0%
TGAGGTTGAATTCCCACCTG+AGG + chr2_3:17963088-17963107 Msa0282170:CDS 50.0%
!!! TAAGGGGGAGCTGGTTTTGT+TGG + chr2_3:17963269-17963288 Msa0282170:intron 50.0%
CTGGTCTGAGTGGTAAGCAA+CGG + chr2_3:17963325-17963344 Msa0282170:intron 50.0%
TGGTCTGAGTGGTAAGCAAC+GGG + chr2_3:17963326-17963345 Msa0282170:intron 50.0%
CAACGGGTCTCTTAAGCATG+TGG + chr2_3:17963342-17963361 Msa0282170:intron 50.0%
CAAGTACCCCCATGTTGTCA+TGG + chr2_3:17963435-17963454 Msa0282170:intron 50.0%
ATTAGGTGTAGGGAAGGGGT+GGG + chr2_3:17963800-17963819 Msa0282170:intron 50.0%
TGGGAGACATGAGAAGGAGA+TGG + chr2_3:17963819-17963838 Msa0282170:intron 50.0%
GAGACATGAGAAGGAGATGG+AGG + chr2_3:17963822-17963841 Msa0282170:intron 50.0%
TGGGAGGAGAGACCTTCTAA+AGG - chr2_3:17963926-17963945 None:intergenic 50.0%
AGACAGATGTTACAGCTGGG+TGG + chr2_3:17964374-17964393 Msa0282170:intron 50.0%
!! GTTACAGTGCTGAAAGCACC+AGG + chr2_3:17965022-17965041 Msa0282170:intron 50.0%
! ACTTTGAGAGGTTCCATCCC+TGG - chr2_3:17965043-17965062 None:intergenic 50.0%
CACAACGTGTCTACGGTTCA+TGG - chr2_3:17965333-17965352 None:intergenic 50.0%
AGGTCAGTCCAGTTGCAGTT+GGG + chr2_3:17965492-17965511 Msa0282170:intron 50.0%
CCGGTTCAACCTATTGAACC+AGG + chr2_3:17965898-17965917 Msa0282170:intron 50.0%
CCAGTCAATTGAACGGTTCC+TGG - chr2_3:17965919-17965938 None:intergenic 50.0%
CCAGGAACCGTTCAATTGAC+TGG + chr2_3:17965916-17965935 Msa0282170:intron 50.0%
GATTAGGTGTAGGGAAGGGG+TGG + chr2_3:17963799-17963818 Msa0282170:intron 55.0%
AAGGGGTGGGAGACATGAGA+AGG + chr2_3:17963813-17963832 Msa0282170:intron 55.0%
CAGATGTTACAGCTGGGTGG+AGG + chr2_3:17964377-17964396 Msa0282170:intron 55.0%
! GTGGGGCTGTTGATGAGTAG+TGG - chr2_3:17964614-17964633 None:intergenic 55.0%
!! AGTGCTGAAAGCACCAGGGA+TGG + chr2_3:17965027-17965046 Msa0282170:intron 55.0%
!! GGAATGGACTGGCTCTGCTT+GGG + chr2_3:17965108-17965127 Msa0282170:CDS 55.0%
CGAGAACCACTGCGATGCTT+CGG - chr2_3:17965143-17965162 None:intergenic 55.0%
!! CGAAGCATCGCAGTGGTTCT+CGG + chr2_3:17965141-17965160 Msa0282170:CDS 55.0%
GCGGTCCCTCGACATAATCA+GGG - chr2_3:17965427-17965446 None:intergenic 55.0%
TGCGGTCCCTCGACATAATC+AGG - chr2_3:17965428-17965447 None:intergenic 55.0%
CAGGTCAGTCCAGTTGCAGT+TGG + chr2_3:17965491-17965510 Msa0282170:intron 55.0%
!! GGGAATGGACTGGCTCTGCT+TGG + chr2_3:17965107-17965126 Msa0282170:CDS 60.0%
!! ACTGGCTCTGCTTGGGACGA+AGG + chr2_3:17965115-17965134 Msa0282170:CDS 60.0%
!! AAGGAGCCGAAGCATCGCAG+TGG + chr2_3:17965134-17965153 Msa0282170:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 17962639 17966710 17962639 ID=Msa0282170;Name=Msa0282170
chr2_3 mRNA 17962639 17966710 17962639 ID=Msa0282170-mRNA-1;Parent=Msa0282170;Name=Msa0282170-mRNA-1;_AED=0.32;_eAED=0.32;_QI=135|1|1|1|1|1|8|362|319
chr2_3 exon 17962639 17962903 17962639 ID=Msa0282170-mRNA-1:exon:7337;Parent=Msa0282170-mRNA-1
chr2_3 exon 17963003 17963152 17963003 ID=Msa0282170-mRNA-1:exon:7338;Parent=Msa0282170-mRNA-1
chr2_3 exon 17965029 17965205 17965029 ID=Msa0282170-mRNA-1:exon:7339;Parent=Msa0282170-mRNA-1
chr2_3 exon 17965402 17965493 17965402 ID=Msa0282170-mRNA-1:exon:7340;Parent=Msa0282170-mRNA-1
chr2_3 exon 17965576 17965640 17965576 ID=Msa0282170-mRNA-1:exon:7341;Parent=Msa0282170-mRNA-1
chr2_3 exon 17965735 17965837 17965735 ID=Msa0282170-mRNA-1:exon:7342;Parent=Msa0282170-mRNA-1
chr2_3 exon 17966027 17966137 17966027 ID=Msa0282170-mRNA-1:exon:7343;Parent=Msa0282170-mRNA-1
chr2_3 exon 17966217 17966710 17966217 ID=Msa0282170-mRNA-1:exon:7344;Parent=Msa0282170-mRNA-1
chr2_3 five_prime_UTR 17962639 17962773 17962639 ID=Msa0282170-mRNA-1:five_prime_utr;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17962774 17962903 17962774 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17963003 17963152 17963003 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17965029 17965205 17965029 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17965402 17965493 17965402 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17965576 17965640 17965576 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17965735 17965837 17965735 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17966027 17966137 17966027 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 CDS 17966217 17966348 17966217 ID=Msa0282170-mRNA-1:cds;Parent=Msa0282170-mRNA-1
chr2_3 three_prime_UTR 17966349 17966710 17966349 ID=Msa0282170-mRNA-1:three_prime_utr;Parent=Msa0282170-mRNA-1
Gene Sequence

>Msa0282170

ATGAGTGTTGCAGCTTCAAAATCTGTAACAGAATCAGCAACACCTGAAGCTAAAGTTACAGGCATTTTCGTATATCCTGTTAAGTCATGCCGTGGAATTTCACTTTCTCAAGTTCCACTCACTCCTTCGGGATTTAGGTGGGATAGACAATGGATGGTTGTGAATTCAAAAGGGAGAGCATGTACTCAAAGAGTTGAACCAAAGCTTGCTTTGGTTGAGGTTGAATTCCCACCTGAGGCTTTTGATGAACACTGGGAACCTACCACTGATTCCTTTATGGTGCTGAAAGCACCAGGGATGGAACCTCTCAAAGTTTGTTTGAACAAACAGTATGAAGTAGCAGATGATATTACAGTGTGGGAATGGACTGGCTCTGCTTGGGACGAAGGAGCCGAAGCATCGCAGTGGTTCTCGGATTATTTAGGAAATCCTACTAAACTGGTCCGCTTCAATACTGCTTCAGAAGTTAGAAAAGTAGACCCTGATTATGTCGAGGGACCGCACCAGACCTTTTTCAGTGATGGCTATCCGTACTTAATCGCATCTCAGGAATCATTGGATGCACTAAACGAGCTTCTAGAGGAACCAATACTTATGAATCGTTTCAGACCCAATATCCTTGTTGAAGGTTGTGAACCGTATTCTGAAGACCTATGGAGAGATTTCAAGATAAGCAGTTTTTCATTTCAGGGTGCCAAGCTGTGTTACCGTTGTAAGATTCCAACAATCAATCAAGAGACAGCAAAAGTTGGAGCTGAACCAAATGAAACTCTCATGAAATATAGGTCTGGCCAAGTCATAAGACCAGATGATAGAAACAAAAAAAGGGTCTACTTTGGTCATGATATAGTGTGGAACTGGATGGAATCTTCTTCTATAGGGGATGGAAAAGTCCTTAAATTGGGAGATCCTGTTTATGTTATCAAAAAGTTCTCTTCTCCAGCAGAAGCAGCTGCTTAA

Protein sequence

>Msa0282170

MSVAASKSVTESATPEAKVTGIFVYPVKSCRGISLSQVPLTPSGFRWDRQWMVVNSKGRACTQRVEPKLALVEVEFPPEAFDEHWEPTTDSFMVLKAPGMEPLKVCLNKQYEVADDITVWEWTGSAWDEGAEASQWFSDYLGNPTKLVRFNTASEVRKVDPDYVEGPHQTFFSDGYPYLIASQESLDALNELLEEPILMNRFRPNILVEGCEPYSEDLWRDFKISSFSFQGAKLCYRCKIPTINQETAKVGAEPNETLMKYRSGQVIRPDDRNKKRVYFGHDIVWNWMESSSIGDGKVLKLGDPVYVIKKFSSPAEAAA*