Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0257580 | XP_003596653.1 | 90.745 | 443 | 14 | 2 | 1 | 416 | 1 | 443 | 0.0 | 815 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0257580 | sp|Q9CXF4|TBC15_MOUSE | 43.836 | 146 | 78 | 2 | 158 | 301 | 394 | 537 | 7.26e-29 | 122 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0257580 | G7IJN4 | 90.745 | 443 | 14 | 2 | 1 | 416 | 1 | 443 | 0.0 | 815 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0217700 | Msa0257580 | 0.862144 | 6.239505e-64 | -8.615850e-47 |
Msa0257580 | Msa0461420 | 0.801226 | 9.949503e-49 | -8.615850e-47 |
Msa0257580 | Msa0733010 | 0.806561 | 7.747765e-50 | -8.615850e-47 |
Msa0257580 | Msa0742210 | 0.800697 | 1.276080e-48 | -8.615850e-47 |
Msa0257580 | Msa0769300 | 0.814420 | 1.555180e-51 | -8.615850e-47 |
Msa0257580 | Msa0773990 | 0.810428 | 1.158512e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0257580 | MtrunA17_Chr2g0319591 | 90.745 | 443 | 14 | 2 | 1 | 416 | 1 | 443 | 0.0 | 815 |
Msa0257580 | MtrunA17_Chr4g0041821 | 70.362 | 442 | 96 | 6 | 1 | 414 | 1 | 435 | 0.0 | 633 |
Msa0257580 | MtrunA17_Chr1g0183581 | 47.619 | 441 | 174 | 5 | 1 | 414 | 12 | 422 | 3.57e-150 | 432 |
Msa0257580 | MtrunA17_Chr2g0329651 | 50.581 | 172 | 84 | 1 | 143 | 314 | 360 | 530 | 1.44e-51 | 184 |
Msa0257580 | MtrunA17_Chr4g0064141 | 41.096 | 146 | 82 | 2 | 158 | 301 | 431 | 574 | 6.59e-31 | 125 |
Msa0257580 | MtrunA17_Chr3g0127461 | 32.751 | 229 | 124 | 3 | 177 | 405 | 338 | 536 | 7.14e-30 | 121 |
Msa0257580 | MtrunA17_Chr1g0146661 | 30.837 | 227 | 127 | 5 | 179 | 405 | 385 | 581 | 4.26e-28 | 116 |
Msa0257580 | MtrunA17_Chr8g0378291 | 27.329 | 161 | 99 | 4 | 157 | 299 | 222 | 382 | 2.22e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0257580 | AT4G27100.2 | 66.516 | 442 | 112 | 5 | 1 | 415 | 1 | 433 | 0.0 | 586 |
Msa0257580 | AT4G27100.1 | 66.136 | 440 | 113 | 5 | 1 | 413 | 1 | 431 | 0.0 | 582 |
Msa0257580 | AT5G54780.1 | 64.269 | 431 | 115 | 5 | 1 | 403 | 1 | 420 | 0.0 | 550 |
Msa0257580 | AT2G20440.1 | 48.409 | 440 | 174 | 6 | 1 | 413 | 7 | 420 | 1.02e-151 | 436 |
Msa0257580 | AT2G20440.2 | 48.409 | 440 | 174 | 6 | 1 | 413 | 7 | 420 | 1.02e-151 | 436 |
Msa0257580 | AT4G28550.1 | 48.182 | 440 | 175 | 6 | 1 | 413 | 7 | 420 | 1.22e-149 | 431 |
Msa0257580 | AT2G20440.4 | 50.909 | 330 | 136 | 4 | 84 | 413 | 1 | 304 | 1.37e-122 | 358 |
Msa0257580 | AT2G20440.3 | 48.773 | 326 | 119 | 4 | 1 | 299 | 7 | 311 | 8.99e-111 | 330 |
Msa0257580 | AT4G28550.3 | 49.074 | 324 | 117 | 4 | 1 | 297 | 7 | 309 | 9.67e-111 | 329 |
Msa0257580 | AT4G28550.2 | 48.923 | 325 | 118 | 4 | 1 | 298 | 7 | 310 | 3.00e-110 | 327 |
Msa0257580 | AT3G59570.1 | 37.386 | 329 | 155 | 4 | 131 | 412 | 339 | 663 | 8.82e-59 | 204 |
Msa0257580 | AT2G43490.6 | 53.801 | 171 | 78 | 1 | 135 | 305 | 335 | 504 | 1.51e-55 | 196 |
Msa0257580 | AT2G43490.8 | 53.801 | 171 | 78 | 1 | 135 | 305 | 335 | 504 | 1.51e-55 | 196 |
Msa0257580 | AT2G43490.5 | 53.801 | 171 | 78 | 1 | 135 | 305 | 339 | 508 | 1.66e-55 | 195 |
Msa0257580 | AT2G43490.1 | 53.801 | 171 | 78 | 1 | 135 | 305 | 339 | 508 | 1.73e-55 | 196 |
Msa0257580 | AT2G43490.7 | 53.801 | 171 | 78 | 1 | 135 | 305 | 339 | 508 | 1.73e-55 | 196 |
Msa0257580 | AT2G43490.3 | 53.801 | 171 | 78 | 1 | 135 | 305 | 339 | 508 | 1.73e-55 | 196 |
Msa0257580 | AT2G43490.2 | 53.801 | 171 | 78 | 1 | 135 | 305 | 339 | 508 | 1.73e-55 | 196 |
Msa0257580 | AT2G43490.4 | 53.801 | 171 | 78 | 1 | 135 | 305 | 339 | 508 | 1.74e-55 | 196 |
Msa0257580 | AT3G59570.2 | 51.429 | 175 | 84 | 1 | 131 | 305 | 339 | 512 | 3.34e-52 | 186 |
Msa0257580 | AT3G59570.3 | 51.429 | 175 | 84 | 1 | 131 | 305 | 339 | 512 | 4.75e-52 | 186 |
Msa0257580 | AT5G52580.2 | 28.346 | 254 | 123 | 4 | 158 | 402 | 456 | 659 | 2.61e-29 | 120 |
Msa0257580 | AT5G41940.1 | 34.802 | 227 | 118 | 7 | 179 | 405 | 345 | 541 | 2.76e-29 | 120 |
Msa0257580 | AT5G52580.1 | 28.346 | 254 | 123 | 4 | 158 | 402 | 439 | 642 | 2.91e-29 | 120 |
Msa0257580 | AT5G52580.3 | 28.346 | 254 | 123 | 4 | 158 | 402 | 445 | 648 | 3.13e-29 | 120 |
Msa0257580 | AT5G53570.1 | 44.715 | 123 | 66 | 1 | 179 | 301 | 338 | 458 | 1.30e-28 | 118 |
Msa0257580 | AT5G53570.2 | 44.715 | 123 | 66 | 1 | 179 | 301 | 365 | 485 | 1.73e-28 | 118 |
Msa0257580 | AT5G24390.1 | 40.800 | 125 | 72 | 1 | 177 | 301 | 315 | 437 | 2.82e-27 | 114 |
Msa0257580 | AT3G49350.1 | 28.194 | 227 | 133 | 3 | 179 | 405 | 330 | 526 | 2.08e-26 | 111 |
Msa0257580 | AT1G04830.1 | 29.651 | 172 | 98 | 6 | 154 | 306 | 223 | 390 | 2.97e-15 | 77.8 |
Msa0257580 | AT1G04830.2 | 29.651 | 172 | 98 | 6 | 154 | 306 | 223 | 390 | 3.14e-15 | 77.8 |
Find 109 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTGTCTGGATTTCTTTC+TGG | 0.022455 | 2_2:+53540060 | None:intergenic |
AAGAAAACTTGTCAAAATTA+TGG | 0.190885 | 2_2:-53539767 | Msa0257580:CDS |
ATAAAATACCTATATGTTTA+TGG | 0.198183 | 2_2:+53539047 | None:intergenic |
TGTTTGGTGCTAGGCTTTCT+TGG | 0.220830 | 2_2:+53536967 | None:intergenic |
CCTATATGTTTATGGAGTTT+TGG | 0.239607 | 2_2:+53539055 | None:intergenic |
GCATTGTTGTTGAATGTATA+TGG | 0.242516 | 2_2:-53542144 | Msa0257580:five_prime_UTR |
CGCCAATTGTTTCCTCTTGT+TGG | 0.248172 | 2_2:-53540153 | Msa0257580:CDS |
CTTCATTATTGTCTCCTATA+AGG | 0.248619 | 2_2:+53536870 | None:intergenic |
GGAGGCTCAACTAAGTAATT+TGG | 0.270154 | 2_2:-53539101 | Msa0257580:CDS |
CTGTCAATGTTATACCTTAT+AGG | 0.304756 | 2_2:-53536884 | Msa0257580:three_prime_UTR |
TGGTTTGCAGAATTGATTAA+AGG | 0.313100 | 2_2:-53536829 | Msa0257580:three_prime_UTR |
AAACACTAAGTCCAAGAAAA+TGG | 0.315609 | 2_2:-53540858 | Msa0257580:CDS |
CATCCAAGCCTCGCGCTTCA+TGG | 0.324462 | 2_2:+53537814 | None:intergenic |
ATGATGAAGCAGACGCATTT+TGG | 0.333770 | 2_2:-53539322 | Msa0257580:CDS |
GATGTACTGGTCGCACTCTT+GGG | 0.336065 | 2_2:-53539126 | Msa0257580:CDS |
AGTTCCCTCAGGGAATTTAA+TGG | 0.338293 | 2_2:+53536792 | None:intergenic |
AGATGTACTGGTCGCACTCT+TGG | 0.345747 | 2_2:-53539127 | Msa0257580:CDS |
AGGAAATCTAGATGCCAAAA+AGG | 0.346102 | 2_2:-53537479 | Msa0257580:CDS |
ATGTTAACTCTCCATCAAAT+AGG | 0.350184 | 2_2:-53539943 | Msa0257580:intron |
TCATACATCAAGAACAAATA+AGG | 0.353993 | 2_2:+53538017 | None:intergenic |
AGAAAACTTGTCAAAATTAT+GGG | 0.382772 | 2_2:-53539766 | Msa0257580:CDS |
TACTTCCTCAAGATAATAAT+AGG | 0.382978 | 2_2:-53540029 | Msa0257580:CDS |
ATTTCTTTCTGGCATAATCA+TGG | 0.383727 | 2_2:+53540071 | None:intergenic |
TTTGTGATTCATTGTACCTA+TGG | 0.385679 | 2_2:-53538722 | Msa0257580:CDS |
AAATTCACAAACCTATTTGA+TGG | 0.386030 | 2_2:+53539932 | None:intergenic |
TTTACAGAATCTATACTTGA+AGG | 0.394310 | 2_2:+53540006 | None:intergenic |
GTTCCCTCAGGGAATTTAAT+GGG | 0.404583 | 2_2:+53536793 | None:intergenic |
GAATTTAATGGGTGGAAACT+TGG | 0.405507 | 2_2:+53536804 | None:intergenic |
CCAAAACTCCATAAACATAT+AGG | 0.406934 | 2_2:-53539055 | Msa0257580:intron |
GCAACAAGGAAAACAGATAT+AGG | 0.410679 | 2_2:+53537870 | None:intergenic |
ATTTACTCAAGAAGGGTATC+TGG | 0.414638 | 2_2:-53540827 | Msa0257580:CDS |
GACCACTCAATGACATGAAA+TGG | 0.415891 | 2_2:+53536628 | None:intergenic |
CATCTCAAGATTCAAGATCA+AGG | 0.418043 | 2_2:-53541884 | Msa0257580:intron |
GAGAGACAAAATATGAGAAA+TGG | 0.418641 | 2_2:-53537918 | Msa0257580:CDS |
ATCATTACTGCAATCTGGTC+TGG | 0.419284 | 2_2:+53541912 | None:intergenic |
TTTCTTTCTGGCATAATCAT+GGG | 0.419894 | 2_2:+53540072 | None:intergenic |
CATCAAGAAGAATTATCATT+GGG | 0.422403 | 2_2:+53539342 | None:intergenic |
CATTTGAGATGATTAAATGA+TGG | 0.423009 | 2_2:-53536922 | Msa0257580:three_prime_UTR |
CAAGAAGGGTATCTGGATAT+AGG | 0.425363 | 2_2:-53540820 | Msa0257580:CDS |
CTTGTGATGTGGAGAGATCC+AGG | 0.427729 | 2_2:-53541961 | Msa0257580:exon |
ATATTCTTGCAGTTTATGCT+TGG | 0.433846 | 2_2:-53539743 | Msa0257580:CDS |
CTTGATCTTGAATCTTGAGA+TGG | 0.445826 | 2_2:+53541885 | None:intergenic |
ATAATCATGGGGTCTTGAAT+TGG | 0.449407 | 2_2:+53540084 | None:intergenic |
ACTTGTCAACTCAAAGAGAA+TGG | 0.449458 | 2_2:+53542119 | None:intergenic |
TCATCAAGAAGAATTATCAT+TGG | 0.451073 | 2_2:+53539341 | None:intergenic |
GCTTGGATAGATAAAGAAGT+TGG | 0.451389 | 2_2:-53539726 | Msa0257580:CDS |
TTGTGATTCATTGTACCTAT+GGG | 0.454384 | 2_2:-53538721 | Msa0257580:CDS |
TTGTTTCCTCTTGTTGGAAG+TGG | 0.462346 | 2_2:-53540147 | Msa0257580:CDS |
CATCATTTAATCATCTCAAA+TGG | 0.467433 | 2_2:+53536923 | None:intergenic |
AGTACAGCTAATCCCTTGTC+TGG | 0.469428 | 2_2:+53540048 | None:intergenic |
CGAGGAAATTTCAGATGTAC+TGG | 0.471593 | 2_2:-53539139 | Msa0257580:CDS |
GGAACATCATTACTGCAATC+TGG | 0.472237 | 2_2:+53541907 | None:intergenic |
CATGATGCATTTACTCAAGA+AGG | 0.472341 | 2_2:-53540835 | Msa0257580:CDS |
TTGACGTGGTTCGCACTGAT+AGG | 0.478186 | 2_2:-53539812 | Msa0257580:CDS |
AAAGAATCAGCTGAAACTCC+TGG | 0.480245 | 2_2:+53541943 | None:intergenic |
CAATGGATATGTTTGGTGCT+AGG | 0.484607 | 2_2:+53536958 | None:intergenic |
CAGATATTGAATGACACAAC+AGG | 0.486107 | 2_2:-53537499 | Msa0257580:CDS |
TGGTCGCACTCTTGGGGTGG+AGG | 0.488394 | 2_2:-53539119 | Msa0257580:CDS |
GATGGAGAGTTAACATCCAC+TGG | 0.490352 | 2_2:+53539950 | None:intergenic |
TGGCCATCATCAGTAATTAC+AGG | 0.493011 | 2_2:+53540108 | None:intergenic |
ACTCCATGAAGCGCGAGGCT+TGG | 0.495463 | 2_2:-53537817 | Msa0257580:CDS |
TTCCAACAAGAGGAAACAAT+TGG | 0.498284 | 2_2:+53540151 | None:intergenic |
TTCTTTCTGGCATAATCATG+GGG | 0.501541 | 2_2:+53540073 | None:intergenic |
TAGGTACAATGAATCACAAA+AGG | 0.507991 | 2_2:+53538725 | None:intergenic |
TAACATACAACAGTTCCCTC+AGG | 0.510849 | 2_2:+53536781 | None:intergenic |
CTTGTCAACTCAAAGAGAAT+GGG | 0.517137 | 2_2:+53542120 | None:intergenic |
ATTTGAGATGATTAAATGAT+GGG | 0.519694 | 2_2:-53536921 | Msa0257580:three_prime_UTR |
GTAAAAGCTGAGGGCGTCAA+AGG | 0.527510 | 2_2:-53537975 | Msa0257580:CDS |
TCACCTGTAATTACTGATGA+TGG | 0.529934 | 2_2:-53540111 | Msa0257580:CDS |
CACAAACACAAGAAGAAACA+AGG | 0.539544 | 2_2:+53542019 | None:intergenic |
AGGAAAACAGATATAGGAAG+AGG | 0.540547 | 2_2:+53537876 | None:intergenic |
GAATTATCATTGGGGAGCAT+AGG | 0.542492 | 2_2:+53539351 | None:intergenic |
TTGATCTTGAATCTTGAGAT+GGG | 0.545349 | 2_2:+53541886 | None:intergenic |
GTGTATCCATCCAAAAGAGC+AGG | 0.551455 | 2_2:-53536736 | Msa0257580:three_prime_UTR |
AGTCAATCAAATTTAGAGTG+TGG | 0.558511 | 2_2:-53536849 | Msa0257580:three_prime_UTR |
TACTGGTCGCACTCTTGGGG+TGG | 0.558646 | 2_2:-53539122 | Msa0257580:CDS |
GAAGGCCTATTATTATCTTG+AGG | 0.560973 | 2_2:+53540024 | None:intergenic |
TGGAGAACAGAACATATTGG+TGG | 0.562536 | 2_2:-53538804 | Msa0257580:intron |
TCAGGATGCAATATGCTACA+TGG | 0.565622 | 2_2:-53540188 | Msa0257580:intron |
TCATGGGGTCTTGAATTGGT+TGG | 0.566507 | 2_2:+53540088 | None:intergenic |
ATTTAATCATCTCAAATGGA+AGG | 0.566778 | 2_2:+53536927 | None:intergenic |
ATGTACTGGTCGCACTCTTG+GGG | 0.573792 | 2_2:-53539125 | Msa0257580:CDS |
AAAGAAGTTGGATACGGTCA+AGG | 0.579690 | 2_2:-53539714 | Msa0257580:intron |
TGATTCATTGTACCTATGGG+AGG | 0.581982 | 2_2:-53538718 | Msa0257580:intron |
ATCAGCTTCTGTAAAAGCTG+AGG | 0.587749 | 2_2:-53537985 | Msa0257580:CDS |
CTTTCAACACACCAGCAACA+AGG | 0.588036 | 2_2:+53537856 | None:intergenic |
ATCCATTTCATGTCATTGAG+TGG | 0.590110 | 2_2:-53536630 | Msa0257580:three_prime_UTR |
AATCGACCACTTCCAACAAG+AGG | 0.590144 | 2_2:+53540141 | None:intergenic |
ATAGATAAAGAAGTTGGATA+CGG | 0.592454 | 2_2:-53539720 | Msa0257580:CDS |
CCACCCATTAAATTCCCTGA+GGG | 0.594717 | 2_2:-53536796 | Msa0257580:three_prime_UTR |
AACATACAACAGTTCCCTCA+GGG | 0.598715 | 2_2:+53536782 | None:intergenic |
AGGCTTGGATGATGTTGTCA+AGG | 0.604218 | 2_2:-53537802 | Msa0257580:intron |
TCAGCTTCTGTAAAAGCTGA+GGG | 0.607394 | 2_2:-53537984 | Msa0257580:CDS |
ATGATGCATTTACTCAAGAA+GGG | 0.608798 | 2_2:-53540834 | Msa0257580:CDS |
GGTTCGCACTGATAGGACAT+TGG | 0.613291 | 2_2:-53539805 | Msa0257580:CDS |
CCAGAAAGAAATCCAGACAA+GGG | 0.614978 | 2_2:-53540060 | Msa0257580:CDS |
AGAACAGAACATATTGGTGG+AGG | 0.618638 | 2_2:-53538801 | Msa0257580:intron |
AAGCCAGACACACCTCCCAT+AGG | 0.625296 | 2_2:+53538706 | None:intergenic |
GCCAGAAAGAAATCCAGACA+AGG | 0.637010 | 2_2:-53540061 | Msa0257580:CDS |
CCCTCAGGGAATTTAATGGG+TGG | 0.639260 | 2_2:+53536796 | None:intergenic |
GCAAAGTCAATACGACAATG+TGG | 0.656189 | 2_2:-53537948 | Msa0257580:CDS |
CTTTGAGACGAATCTACCGA+GGG | 0.661418 | 2_2:-53540792 | Msa0257580:CDS |
ATACGTTTCAGGTCTTGACG+TGG | 0.662348 | 2_2:-53539826 | Msa0257580:intron |
CAGACAAGAAACTAATCCAG+TGG | 0.668020 | 2_2:-53539966 | Msa0257580:CDS |
ATCAAGAAGAATTATCATTG+GGG | 0.677023 | 2_2:+53539343 | None:intergenic |
AAATTACTCCATGAAGCGCG+AGG | 0.681422 | 2_2:-53537822 | Msa0257580:CDS |
TCCACCCATTAAATTCCCTG+AGG | 0.686227 | 2_2:-53536797 | Msa0257580:three_prime_UTR |
ACTTTGAGACGAATCTACCG+AGG | 0.700779 | 2_2:-53540793 | Msa0257580:CDS |
TTTGAGACGAATCTACCGAG+GGG | 0.798701 | 2_2:-53540791 | Msa0257580:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTAAAGTTTTTTTTATAAA+TGG | - | chr2_2:53537199-53537218 | Msa0257580:intron | 10.0% |
!!! | TTTTTTTTATTCTAATAAGA+AGG | - | chr2_2:53539171-53539190 | Msa0257580:intron | 10.0% |
!!! | TTTTATTCAACAAATTTTAA+TGG | + | chr2_2:53539876-53539895 | None:intergenic | 10.0% |
!!! | AAAGTTTGATTTTTATTTCT+GGG | - | chr2_2:53536911-53536930 | Msa0257580:three_prime_UTR | 15.0% |
!!! | GTTTTTGTTATAATTTTGTT+TGG | - | chr2_2:53536933-53536952 | Msa0257580:three_prime_UTR | 15.0% |
!! | ATAAAATACCTATATGTTTA+TGG | + | chr2_2:53539712-53539731 | None:intergenic | 15.0% |
!!! | AATTTACTGTCTTTTAATTT+TGG | - | chr2_2:53539932-53539951 | Msa0257580:intron | 15.0% |
!!! | ATTTACATTTTATTGAACAA+TGG | - | chr2_2:53540098-53540117 | Msa0257580:CDS | 15.0% |
!! | CATATATATATATAGTACTA+CGG | - | chr2_2:53540364-53540383 | Msa0257580:intron | 15.0% |
!!! | ATATCATAAACTGTTTTAAT+GGG | + | chr2_2:53540622-53540641 | None:intergenic | 15.0% |
!!! | TATATCATAAACTGTTTTAA+TGG | + | chr2_2:53540623-53540642 | None:intergenic | 15.0% |
!! | AATTTAACACATACATAAAA+AGG | + | chr2_2:53541198-53541217 | None:intergenic | 15.0% |
!! | CAGAAATAAAAATCAAACTT+TGG | + | chr2_2:53536912-53536931 | None:intergenic | 20.0% |
!!! | CAAAGTTTGATTTTTATTTC+TGG | - | chr2_2:53536910-53536929 | Msa0257580:three_prime_UTR | 20.0% |
!!! | TTTAAGATAGTGTCTTTTTT+TGG | - | chr2_2:53537568-53537587 | Msa0257580:intron | 20.0% |
!!! | TTTTCTTAATTTTGGAAACT+CGG | - | chr2_2:53537808-53537827 | Msa0257580:CDS | 20.0% |
!! | ATAATCATCAATACTTTCAA+GGG | + | chr2_2:53538099-53538118 | None:intergenic | 20.0% |
!!! | CAAGAATTTTTATGTTTATG+TGG | - | chr2_2:53538149-53538168 | Msa0257580:intron | 20.0% |
!! | TTGTTAAAAAATTTCAAACC+AGG | - | chr2_2:53538191-53538210 | Msa0257580:intron | 20.0% |
!! | TGTTAAAAAATTTCAAACCA+GGG | - | chr2_2:53538192-53538211 | Msa0257580:intron | 20.0% |
!! | ACATTGAAACAATTATGAAA+TGG | + | chr2_2:53538331-53538350 | None:intergenic | 20.0% |
!! | TTACCATGTGATTTATATTA+CGG | + | chr2_2:53538889-53538908 | None:intergenic | 20.0% |
!! | AAGAAAACTTGTCAAAATTA+TGG | - | chr2_2:53538989-53539008 | Msa0257580:intron | 20.0% |
!! | AGAAAACTTGTCAAAATTAT+GGG | - | chr2_2:53538990-53539009 | Msa0257580:intron | 20.0% |
!! | AATAAACCAAGTAAACAAAT+TGG | - | chr2_2:53539201-53539220 | Msa0257580:intron | 20.0% |
!! | TAAAAGAGATAATAGAGATA+AGG | + | chr2_2:53539494-53539513 | None:intergenic | 20.0% |
!! | TTTCCATTAATAATTTCTTC+AGG | + | chr2_2:53539832-53539851 | None:intergenic | 20.0% |
!! | CGTAGTACTATATATATATA+TGG | + | chr2_2:53540366-53540385 | None:intergenic | 20.0% |
!!! | TATCATAAACTGTTTTAATG+GGG | + | chr2_2:53540621-53540640 | None:intergenic | 20.0% |
!!! | AAATTTTTAACAGATGATGT+GGG | - | chr2_2:53540702-53540721 | Msa0257580:intron | 20.0% |
!! | TCACAAAAAATATTTGAGAA+AGG | - | chr2_2:53541322-53541341 | Msa0257580:intron | 20.0% |
!! | AAACAAAAAATGTTAACTAG+TGG | - | chr2_2:53541465-53541484 | Msa0257580:intron | 20.0% |
!! | AAAAAATCAATGGATATGTT+TGG | + | chr2_2:53541808-53541827 | None:intergenic | 20.0% |
!!! | ATTTGAGATGATTAAATGAT+GGG | - | chr2_2:53541835-53541854 | Msa0257580:intron | 20.0% |
!! | TAATACAAAAAAGAAAAGAC+AGG | - | chr2_2:53542095-53542114 | Msa0257580:five_prime_UTR | 20.0% |
! | ATTATTGGATTGATGGAAAT+TGG | - | chr2_2:53536988-53537007 | Msa0257580:intron | 25.0% |
!! | AGAAACTTTTGTTCATTTTG+AGG | - | chr2_2:53537278-53537297 | Msa0257580:intron | 25.0% |
!! | GAAACTTTTGTTCATTTTGA+GGG | - | chr2_2:53537279-53537298 | Msa0257580:intron | 25.0% |
!! | AAACTTTTGTTCATTTTGAG+GGG | - | chr2_2:53537280-53537299 | Msa0257580:intron | 25.0% |
! | TTAACACACAATGTTATCAA+CGG | + | chr2_2:53537460-53537479 | None:intergenic | 25.0% |
! | TGATAACATTGTGTGTTAAA+TGG | - | chr2_2:53537461-53537480 | Msa0257580:CDS | 25.0% |
! | GATAACATTGTGTGTTAAAT+GGG | - | chr2_2:53537462-53537481 | Msa0257580:CDS | 25.0% |
!! | ATGCAAATGATTTTGTGTTA+AGG | + | chr2_2:53537726-53537745 | None:intergenic | 25.0% |
!! | ACTTCTTGATTGTTATTACA+TGG | - | chr2_2:53537863-53537882 | Msa0257580:CDS | 25.0% |
! | AAATATGATTAAGATCAGAC+AGG | + | chr2_2:53538065-53538084 | None:intergenic | 25.0% |
! | CATAATCATCAATACTTTCA+AGG | + | chr2_2:53538100-53538119 | None:intergenic | 25.0% |
!!! | CTTGAAAGTATTGATGATTA+TGG | - | chr2_2:53538098-53538117 | Msa0257580:intron | 25.0% |
!!! | CAATGTTTTAAAAACTCAAC+CGG | - | chr2_2:53538345-53538364 | Msa0257580:intron | 25.0% |
! | AGTTCAAGTAATGATCTTAT+AGG | + | chr2_2:53538528-53538547 | None:intergenic | 25.0% |
!! | ACTTTTATGTTTATGTCATC+AGG | - | chr2_2:53538550-53538569 | Msa0257580:intron | 25.0% |
! | TACTTCCTCAAGATAATAAT+AGG | - | chr2_2:53538727-53538746 | Msa0257580:CDS | 25.0% |
! | TTTACAGAATCTATACTTGA+AGG | + | chr2_2:53538753-53538772 | None:intergenic | 25.0% |
! | AAATTCACAAACCTATTTGA+TGG | + | chr2_2:53538827-53538846 | None:intergenic | 25.0% |
! | ACGTATTATGTGCATAAAAA+GGG | + | chr2_2:53538916-53538935 | None:intergenic | 25.0% |
! | AACGTATTATGTGCATAAAA+AGG | + | chr2_2:53538917-53538936 | None:intergenic | 25.0% |
! | ATAGATAAAGAAGTTGGATA+CGG | - | chr2_2:53539036-53539055 | Msa0257580:intron | 25.0% |
! | AAAAAAAACTACTACTTGCA+TGG | + | chr2_2:53539156-53539175 | None:intergenic | 25.0% |
!! | TTGTTTCCAATTTGTTTACT+TGG | + | chr2_2:53539210-53539229 | None:intergenic | 25.0% |
! | ATCAAGAAGAATTATCATTG+GGG | + | chr2_2:53539416-53539435 | None:intergenic | 25.0% |
! | CATCAAGAAGAATTATCATT+GGG | + | chr2_2:53539417-53539436 | None:intergenic | 25.0% |
! | TCATCAAGAAGAATTATCAT+TGG | + | chr2_2:53539418-53539437 | None:intergenic | 25.0% |
! | ATGCCTGAAGAAATTATTAA+TGG | - | chr2_2:53539826-53539845 | Msa0257580:intron | 25.0% |
! | TTTCTTCAACATAACAAAAG+AGG | + | chr2_2:53539901-53539920 | None:intergenic | 25.0% |
!!! | CTTTTGTTATGTTGAAGAAA+TGG | - | chr2_2:53539901-53539920 | Msa0257580:intron | 25.0% |
! | CTAACACTATCTCATTAATT+CGG | + | chr2_2:53540183-53540202 | None:intergenic | 25.0% |
!!! | ATCATAAACTGTTTTAATGG+GGG | + | chr2_2:53540620-53540639 | None:intergenic | 25.0% |
!! | GAAATTTTTAACAGATGATG+TGG | - | chr2_2:53540701-53540720 | Msa0257580:intron | 25.0% |
! | TCATACATCAAGAACAAATA+AGG | + | chr2_2:53540742-53540761 | None:intergenic | 25.0% |
! | AGACTTTGCAATAAATGTAT+TGG | + | chr2_2:53541425-53541444 | None:intergenic | 25.0% |
! | TTTATTGCAAAGTCTTAGAT+TGG | - | chr2_2:53541430-53541449 | Msa0257580:intron | 25.0% |
! | AAAATGTTAACTAGTGGTTA+AGG | - | chr2_2:53541471-53541490 | Msa0257580:intron | 25.0% |
! | AATAGTCATAAGCAATAAGT+TGG | + | chr2_2:53541599-53541618 | None:intergenic | 25.0% |
! | AATAAACTTTAATTGCTTGC+AGG | - | chr2_2:53541766-53541785 | Msa0257580:intron | 25.0% |
! | AATGGAAGGAAAAAAATCAA+TGG | + | chr2_2:53541818-53541837 | None:intergenic | 25.0% |
! | ATTTAATCATCTCAAATGGA+AGG | + | chr2_2:53541832-53541851 | None:intergenic | 25.0% |
! | CATCATTTAATCATCTCAAA+TGG | + | chr2_2:53541836-53541855 | None:intergenic | 25.0% |
!! | CATTTGAGATGATTAAATGA+TGG | - | chr2_2:53541834-53541853 | Msa0257580:intron | 25.0% |
! | GCATTGTTGTTGAATGTATA+TGG | - | chr2_2:53536612-53536631 | Msa0257580:three_prime_UTR | 30.0% |
!! | AGTTGACAAGTTTTTGTTTC+TGG | - | chr2_2:53536649-53536668 | Msa0257580:three_prime_UTR | 30.0% |
!! | GTTGACAAGTTTTTGTTTCT+GGG | - | chr2_2:53536650-53536669 | Msa0257580:three_prime_UTR | 30.0% |
! | ATTTTCAGTTTCTTGTGATG+TGG | - | chr2_2:53536784-53536803 | Msa0257580:three_prime_UTR | 30.0% |
TTGATCTTGAATCTTGAGAT+GGG | + | chr2_2:53536873-53536892 | None:intergenic | 30.0% | |
! | TTGGTGATATAAACTGTTGT+TGG | - | chr2_2:53536952-53536971 | Msa0257580:three_prime_UTR | 30.0% |
TGGTGATATAAACTGTTGTT+GGG | - | chr2_2:53536953-53536972 | Msa0257580:three_prime_UTR | 30.0% | |
TATAAACTGTTGTTGGGTAT+AGG | - | chr2_2:53536959-53536978 | Msa0257580:exon | 30.0% | |
GAAGTGTATTATTGGATTGA+TGG | - | chr2_2:53536981-53537000 | Msa0257580:intron | 30.0% | |
TAGTACATAACAATGAAGCA+CGG | + | chr2_2:53537140-53537159 | None:intergenic | 30.0% | |
!! | AGCTTGTTAAGTTGATAAAC+AGG | - | chr2_2:53537254-53537273 | Msa0257580:intron | 30.0% |
! | TTTCAGATAGTTGATATGTG+AGG | - | chr2_2:53537313-53537332 | Msa0257580:intron | 30.0% |
TTGAATGTGATGACAAGTAT+TGG | - | chr2_2:53537336-53537355 | Msa0257580:intron | 30.0% | |
AAACACTAAGTCCAAGAAAA+TGG | - | chr2_2:53537898-53537917 | Msa0257580:CDS | 30.0% | |
ATGATGCATTTACTCAAGAA+GGG | - | chr2_2:53537922-53537941 | Msa0257580:CDS | 30.0% | |
! | GAAGTTTGGGAATTTTTACT+TGG | - | chr2_2:53538237-53538256 | Msa0257580:intron | 30.0% |
! | GTCTAGAATTCAGAAATGTT+GGG | + | chr2_2:53538506-53538525 | None:intergenic | 30.0% |
! | TTTCTTTCTGGCATAATCAT+GGG | + | chr2_2:53538687-53538706 | None:intergenic | 30.0% |
! | ATTTCTTTCTGGCATAATCA+TGG | + | chr2_2:53538688-53538707 | None:intergenic | 30.0% |
ATGTTAACTCTCCATCAAAT+AGG | - | chr2_2:53538813-53538832 | Msa0257580:intron | 30.0% | |
TCACCGTAATATAAATCACA+TGG | - | chr2_2:53538883-53538902 | Msa0257580:intron | 30.0% | |
TTATGCACATAATACGTTTC+AGG | - | chr2_2:53538919-53538938 | Msa0257580:intron | 30.0% | |
ATATTCTTGCAGTTTATGCT+TGG | - | chr2_2:53539013-53539032 | Msa0257580:intron | 30.0% | |
!! | AGTACTGATCTATTTCAAAG+AGG | + | chr2_2:53539078-53539097 | None:intergenic | 30.0% |
TAGATACTTCTATCCAACTA+TGG | - | chr2_2:53539103-53539122 | Msa0257580:CDS | 30.0% | |
TTCTCGATATATCAATCTAG+TGG | + | chr2_2:53539248-53539267 | None:intergenic | 30.0% | |
AACAATTCACAATTCTGAAC+AGG | - | chr2_2:53539373-53539392 | Msa0257580:intron | 30.0% | |
AAGTATGTAATTCAAGTGCT+CGG | - | chr2_2:53539543-53539562 | Msa0257580:intron | 30.0% | |
! | CCTATATGTTTATGGAGTTT+TGG | + | chr2_2:53539704-53539723 | None:intergenic | 30.0% |
CCAAAACTCCATAAACATAT+AGG | - | chr2_2:53539701-53539720 | Msa0257580:intron | 30.0% | |
! | TCGAATTTTCTAACTCGATT+TGG | - | chr2_2:53539769-53539788 | Msa0257580:CDS | 30.0% |
! | CGAATTTTCTAACTCGATTT+GGG | - | chr2_2:53539770-53539789 | Msa0257580:CDS | 30.0% |
!! | TTTTGGAGAACAGAACATAT+TGG | - | chr2_2:53539949-53539968 | Msa0257580:CDS | 30.0% |
TAGGTACAATGAATCACAAA+AGG | + | chr2_2:53540034-53540053 | None:intergenic | 30.0% | |
TTTGTGATTCATTGTACCTA+TGG | - | chr2_2:53540034-53540053 | Msa0257580:CDS | 30.0% | |
TTGTGATTCATTGTACCTAT+GGG | - | chr2_2:53540035-53540054 | Msa0257580:CDS | 30.0% | |
AGAAAGCAAATTGCAAACAA+TGG | - | chr2_2:53540231-53540250 | Msa0257580:intron | 30.0% | |
CATATATAGACACATAAGAG+AGG | + | chr2_2:53540512-53540531 | None:intergenic | 30.0% | |
GTAAAACTATCTGTTGAGTA+TGG | + | chr2_2:53540537-53540556 | None:intergenic | 30.0% | |
GAGAGACAAAATATGAGAAA+TGG | - | chr2_2:53540838-53540857 | Msa0257580:CDS | 30.0% | |
! | TGAAATTGATGTTCCCTTTT+TGG | - | chr2_2:53541054-53541073 | Msa0257580:intron | 30.0% |
!! | CATAGCTTGTTAACCAAAAA+GGG | + | chr2_2:53541070-53541089 | None:intergenic | 30.0% |
!! | ACATAGCTTGTTAACCAAAA+AGG | + | chr2_2:53541071-53541090 | None:intergenic | 30.0% |
! | AAGTTTTACATCGTACCATA+TGG | + | chr2_2:53541718-53541737 | None:intergenic | 30.0% |
CTGTCAATGTTATACCTTAT+AGG | - | chr2_2:53541872-53541891 | Msa0257580:intron | 30.0% | |
CTTCATTATTGTCTCCTATA+AGG | + | chr2_2:53541889-53541908 | None:intergenic | 30.0% | |
! | AGTCAATCAAATTTAGAGTG+TGG | - | chr2_2:53541907-53541926 | Msa0257580:CDS | 30.0% |
! | TGGTTTGCAGAATTGATTAA+AGG | - | chr2_2:53541927-53541946 | Msa0257580:CDS | 30.0% |
! | ACAATTTTTACCTGCTCTTT+TGG | + | chr2_2:53542033-53542052 | None:intergenic | 30.0% |
CTTGTCAACTCAAAGAGAAT+GGG | + | chr2_2:53536639-53536658 | None:intergenic | 35.0% | |
ACTTGTCAACTCAAAGAGAA+TGG | + | chr2_2:53536640-53536659 | None:intergenic | 35.0% | |
CACAAACACAAGAAGAAACA+AGG | + | chr2_2:53536740-53536759 | None:intergenic | 35.0% | |
CTTGATCTTGAATCTTGAGA+TGG | + | chr2_2:53536874-53536893 | None:intergenic | 35.0% | |
CATCTCAAGATTCAAGATCA+AGG | - | chr2_2:53536872-53536891 | Msa0257580:three_prime_UTR | 35.0% | |
! | GGGTATAGGAAGTGTATTAT+TGG | - | chr2_2:53536973-53536992 | Msa0257580:intron | 35.0% |
GATTGTCAAAAAATCCTCCA+TGG | + | chr2_2:53537362-53537381 | None:intergenic | 35.0% | |
!!! | GGATTTTTTGACAATCTCCA+TGG | - | chr2_2:53537366-53537385 | Msa0257580:intron | 35.0% |
! | GTATCCATCATGGTGTTTTA+TGG | - | chr2_2:53537409-53537428 | Msa0257580:intron | 35.0% |
!! | ATTGTGTGTTAAATGGGTTG+TGG | - | chr2_2:53537468-53537487 | Msa0257580:CDS | 35.0% |
CTTTGCTAAGTTGTCAGTAA+TGG | - | chr2_2:53537493-53537512 | Msa0257580:CDS | 35.0% | |
!!! | GTTGTCAGTAATGGTTTTGT+TGG | - | chr2_2:53537502-53537521 | Msa0257580:intron | 35.0% |
CTAGACTTTCAATCTCACAA+TGG | - | chr2_2:53537769-53537788 | Msa0257580:intron | 35.0% | |
! | TGATTGTTATTACATGGCTC+AGG | - | chr2_2:53537869-53537888 | Msa0257580:CDS | 35.0% |
!!! | AATGCATCATGCCATTTTCT+TGG | + | chr2_2:53537912-53537931 | None:intergenic | 35.0% |
CATGATGCATTTACTCAAGA+AGG | - | chr2_2:53537921-53537940 | Msa0257580:CDS | 35.0% | |
!! | ATTTACTCAAGAAGGGTATC+TGG | - | chr2_2:53537929-53537948 | Msa0257580:CDS | 35.0% |
ATATAAGAGCAAATACCCCT+CGG | + | chr2_2:53537983-53538002 | None:intergenic | 35.0% | |
ATATCTGAATCCTAGCTTGA+TGG | - | chr2_2:53538035-53538054 | Msa0257580:CDS | 35.0% | |
ATCAATTAGGGGAGAAGTTT+GGG | - | chr2_2:53538224-53538243 | Msa0257580:intron | 35.0% | |
TTTCGTCAAATGTACTCTTC+GGG | + | chr2_2:53538272-53538291 | None:intergenic | 35.0% | |
CTTTCGTCAAATGTACTCTT+CGG | + | chr2_2:53538273-53538292 | None:intergenic | 35.0% | |
CAACTATTCGGTTATTTGAG+TGG | + | chr2_2:53538438-53538457 | None:intergenic | 35.0% | |
GTTTAACTGGTTGAACTGTA+TGG | - | chr2_2:53538474-53538493 | Msa0257580:intron | 35.0% | |
! | GGTCTAGAATTCAGAAATGT+TGG | + | chr2_2:53538507-53538526 | None:intergenic | 35.0% |
TTCCAACAAGAGGAAACAAT+TGG | + | chr2_2:53538608-53538627 | None:intergenic | 35.0% | |
TCACCTGTAATTACTGATGA+TGG | - | chr2_2:53538645-53538664 | Msa0257580:intron | 35.0% | |
ATAATCATGGGGTCTTGAAT+TGG | + | chr2_2:53538675-53538694 | None:intergenic | 35.0% | |
! | TTCTTTCTGGCATAATCATG+GGG | + | chr2_2:53538686-53538705 | None:intergenic | 35.0% |
GAAGGCCTATTATTATCTTG+AGG | + | chr2_2:53538735-53538754 | None:intergenic | 35.0% | |
! | CTTGTGCACTATTTTGTAGT+AGG | - | chr2_2:53538849-53538868 | Msa0257580:intron | 35.0% |
GCTTGGATAGATAAAGAAGT+TGG | - | chr2_2:53539030-53539049 | Msa0257580:intron | 35.0% | |
TCAACGTGAAATACCATAGT+TGG | + | chr2_2:53539119-53539138 | None:intergenic | 35.0% | |
TTGCAAGGTTGCAAGAAAAA+TGG | + | chr2_2:53539299-53539318 | None:intergenic | 35.0% | |
TGCAACCTTGCAACAAATAA+TGG | - | chr2_2:53539306-53539325 | Msa0257580:CDS | 35.0% | |
! | ACTTGCCATTATTTGTTGCA+AGG | + | chr2_2:53539314-53539333 | None:intergenic | 35.0% |
TAGCTTAGAGACATTGCAAA+TGG | + | chr2_2:53539345-53539364 | None:intergenic | 35.0% | |
!!! | ATTTTCTAACTCGATTTGGG+TGG | - | chr2_2:53539773-53539792 | Msa0257580:CDS | 35.0% |
!! | GCGACTATGTATTTGCTTTT+CGG | - | chr2_2:53539977-53539996 | Msa0257580:CDS | 35.0% |
!! | ATTTGCTTTTCGGATGCTTA+TGG | - | chr2_2:53539987-53540006 | Msa0257580:CDS | 35.0% |
AGGAAAACAGATATAGGAAG+AGG | + | chr2_2:53540883-53540902 | None:intergenic | 35.0% | |
GCAACAAGGAAAACAGATAT+AGG | + | chr2_2:53540889-53540908 | None:intergenic | 35.0% | |
! | ATATCTGTTTTCCTTGTTGC+TGG | - | chr2_2:53540889-53540908 | Msa0257580:intron | 35.0% |
! | ATGTTGTCAAGGTTAGTCAT+GGG | - | chr2_2:53540965-53540984 | Msa0257580:intron | 35.0% |
CAGATATTGAATGACACAAC+AGG | - | chr2_2:53541257-53541276 | Msa0257580:intron | 35.0% | |
AGGAAATCTAGATGCCAAAA+AGG | - | chr2_2:53541277-53541296 | Msa0257580:intron | 35.0% | |
GAGAATACGAAGATTGTACA+AGG | + | chr2_2:53541370-53541389 | None:intergenic | 35.0% | |
CGAAATACAGATCTATGTGA+CGG | + | chr2_2:53541527-53541546 | None:intergenic | 35.0% | |
TTTCTCAGTAGTTAGCCATA+TGG | - | chr2_2:53541700-53541719 | Msa0257580:intron | 35.0% | |
! | GAATTTAATGGGTGGAAACT+TGG | + | chr2_2:53541955-53541974 | None:intergenic | 35.0% |
! | TTTTTACCTGCTCTTTTGGA+TGG | + | chr2_2:53542029-53542048 | None:intergenic | 35.0% |
ATCCATTTCATGTCATTGAG+TGG | - | chr2_2:53542126-53542145 | Msa0257580:five_prime_UTR | 35.0% | |
AAAGAATCAGCTGAAACTCC+TGG | + | chr2_2:53536816-53536835 | None:intergenic | 40.0% | |
ATCATTACTGCAATCTGGTC+TGG | + | chr2_2:53536847-53536866 | None:intergenic | 40.0% | |
GGAACATCATTACTGCAATC+TGG | + | chr2_2:53536852-53536871 | None:intergenic | 40.0% | |
GGATTGATGGAAATTGGTGT+TGG | - | chr2_2:53536994-53537013 | Msa0257580:intron | 40.0% | |
CCTAAAAGGCTTTCAATCAG+AGG | + | chr2_2:53537069-53537088 | None:intergenic | 40.0% | |
! | CCTCTGATTGAAAGCCTTTT+AGG | - | chr2_2:53537066-53537085 | Msa0257580:intron | 40.0% |
ATCAACACTGCACACCTAAA+AGG | + | chr2_2:53537083-53537102 | None:intergenic | 40.0% | |
! | TCCATCATGGTGTTTTATGG+TGG | - | chr2_2:53537412-53537431 | Msa0257580:intron | 40.0% |
TCCACCATAAAACACCATGA+TGG | + | chr2_2:53537416-53537435 | None:intergenic | 40.0% | |
ACACACAATGTTATCAACGG+AGG | + | chr2_2:53537457-53537476 | None:intergenic | 40.0% | |
!! | CAAGAAGGGTATCTGGATAT+AGG | - | chr2_2:53537936-53537955 | Msa0257580:CDS | 40.0% |
CAAACTTCTCCCCTAATTGA+TGG | + | chr2_2:53538225-53538244 | None:intergenic | 40.0% | |
CATCAATTAGGGGAGAAGTT+TGG | - | chr2_2:53538223-53538242 | Msa0257580:intron | 40.0% | |
ATCAAATAAGAGAACGCCGA+AGG | - | chr2_2:53538295-53538314 | Msa0257580:intron | 40.0% | |
AAATGGAAGCTGACTACCTT+CGG | + | chr2_2:53538314-53538333 | None:intergenic | 40.0% | |
CATAGTTCAACCACTCAAAC+CGG | - | chr2_2:53538394-53538413 | Msa0257580:intron | 40.0% | |
GTTTGACTGTTGTTCTGTTC+CGG | + | chr2_2:53538416-53538435 | None:intergenic | 40.0% | |
AACCGAATAGTTGACAGCAT+CGG | - | chr2_2:53538445-53538464 | Msa0257580:intron | 40.0% | |
AACCGATGCTGTCAACTATT+CGG | + | chr2_2:53538450-53538469 | None:intergenic | 40.0% | |
ACTGGTTGAACTGTATGGTT+CGG | - | chr2_2:53538479-53538498 | Msa0257580:intron | 40.0% | |
TCAGGATGCAATATGCTACA+TGG | - | chr2_2:53538568-53538587 | Msa0257580:intron | 40.0% | |
TTGTTTCCTCTTGTTGGAAG+TGG | - | chr2_2:53538609-53538628 | Msa0257580:intron | 40.0% | |
TGGCCATCATCAGTAATTAC+AGG | + | chr2_2:53538651-53538670 | None:intergenic | 40.0% | |
CCAGAAAGAAATCCAGACAA+GGG | - | chr2_2:53538696-53538715 | Msa0257580:intron | 40.0% | |
CAGACAAGAAACTAATCCAG+TGG | - | chr2_2:53538790-53538809 | Msa0257580:CDS | 40.0% | |
AAAGAAGTTGGATACGGTCA+AGG | - | chr2_2:53539042-53539061 | Msa0257580:intron | 40.0% | |
GAGACATTGCAAATGGTGTT+TGG | + | chr2_2:53539338-53539357 | None:intergenic | 40.0% | |
! | GAATTATCATTGGGGAGCAT+AGG | + | chr2_2:53539408-53539427 | None:intergenic | 40.0% |
! | ATGATGAAGCAGACGCATTT+TGG | - | chr2_2:53539434-53539453 | Msa0257580:intron | 40.0% |
!! | GTTCTTGAACTTTTCAAGCG+AGG | - | chr2_2:53539599-53539618 | Msa0257580:intron | 40.0% |
CGAGGAAATTTCAGATGTAC+TGG | - | chr2_2:53539617-53539636 | Msa0257580:intron | 40.0% | |
GGAGGCTCAACTAAGTAATT+TGG | - | chr2_2:53539655-53539674 | Msa0257580:intron | 40.0% | |
TGGAGAACAGAACATATTGG+TGG | - | chr2_2:53539952-53539971 | Msa0257580:CDS | 40.0% | |
AGAACAGAACATATTGGTGG+AGG | - | chr2_2:53539955-53539974 | Msa0257580:CDS | 40.0% | |
TGATTCATTGTACCTATGGG+AGG | - | chr2_2:53540038-53540057 | Msa0257580:CDS | 40.0% | |
GATAGTGTTAGAACACCAAC+CGG | - | chr2_2:53540192-53540211 | Msa0257580:intron | 40.0% | |
! | TCTCTTTCATTTTCCGCTAC+CGG | + | chr2_2:53540214-53540233 | None:intergenic | 40.0% |
GATCGTTTGCTTACACAGTT+CGG | - | chr2_2:53540259-53540278 | Msa0257580:intron | 40.0% | |
TAGACACATAAGAGAGGCAA+GGG | + | chr2_2:53540506-53540525 | None:intergenic | 40.0% | |
ATAGACACATAAGAGAGGCA+AGG | + | chr2_2:53540507-53540526 | None:intergenic | 40.0% | |
ATCAGCTTCTGTAAAAGCTG+AGG | - | chr2_2:53540771-53540790 | Msa0257580:intron | 40.0% | |
TCAGCTTCTGTAAAAGCTGA+GGG | - | chr2_2:53540772-53540791 | Msa0257580:intron | 40.0% | |
GCAAAGTCAATACGACAATG+TGG | - | chr2_2:53540808-53540827 | Msa0257580:CDS | 40.0% | |
! | GATGTTGTCAAGGTTAGTCA+TGG | - | chr2_2:53540964-53540983 | Msa0257580:intron | 40.0% |
AATAACACGCAAGATGTCAG+AGG | + | chr2_2:53541232-53541251 | None:intergenic | 40.0% | |
CAGATCTATGTGACGGTAAA+TGG | + | chr2_2:53541520-53541539 | None:intergenic | 40.0% | |
!! | CAATGGATATGTTTGGTGCT+AGG | + | chr2_2:53541801-53541820 | None:intergenic | 40.0% |
GTTCCCTCAGGGAATTTAAT+GGG | + | chr2_2:53541966-53541985 | None:intergenic | 40.0% | |
AGTTCCCTCAGGGAATTTAA+TGG | + | chr2_2:53541967-53541986 | None:intergenic | 40.0% | |
AACATACAACAGTTCCCTCA+GGG | + | chr2_2:53541977-53541996 | None:intergenic | 40.0% | |
TAACATACAACAGTTCCCTC+AGG | + | chr2_2:53541978-53541997 | None:intergenic | 40.0% | |
GACCACTCAATGACATGAAA+TGG | + | chr2_2:53542131-53542150 | None:intergenic | 40.0% | |
TGATGTGTATGTGTCGTGTC+CGG | - | chr2_2:53537099-53537118 | Msa0257580:intron | 45.0% | |
ACGGACACAAACATGAACAC+CGG | + | chr2_2:53537121-53537140 | None:intergenic | 45.0% | |
!! | GTGATGACAAGTATTGGCCA+TGG | - | chr2_2:53537342-53537361 | Msa0257580:intron | 45.0% |
!! | ATGACAAGTATTGGCCATGG+AGG | - | chr2_2:53537345-53537364 | Msa0257580:intron | 45.0% |
TCTCCATGGCCAATTTGTGA+AGG | - | chr2_2:53537380-53537399 | Msa0257580:intron | 45.0% | |
CATCCTTCACAAATTGGCCA+TGG | + | chr2_2:53537386-53537405 | None:intergenic | 45.0% | |
CATGGCCAATTTGTGAAGGA+TGG | - | chr2_2:53537384-53537403 | Msa0257580:intron | 45.0% | |
TACCGCCATCCTTCACAAAT+TGG | + | chr2_2:53537392-53537411 | None:intergenic | 45.0% | |
ATGTTATCAACGGAGGATCG+CGG | + | chr2_2:53537450-53537469 | None:intergenic | 45.0% | |
!! | TTGGCGATGCTACTTTGTTG+AGG | - | chr2_2:53537521-53537540 | Msa0257580:intron | 45.0% |
!! | TGGCGATGCTACTTTGTTGA+GGG | - | chr2_2:53537522-53537541 | Msa0257580:intron | 45.0% |
TGTTATTACATGGCTCAGGC+TGG | - | chr2_2:53537873-53537892 | Msa0257580:CDS | 45.0% | |
!! | ACTTTGAGACGAATCTACCG+AGG | - | chr2_2:53537963-53537982 | Msa0257580:CDS | 45.0% |
!! | CTTTGAGACGAATCTACCGA+GGG | - | chr2_2:53537964-53537983 | Msa0257580:CDS | 45.0% |
! | TTTGAGACGAATCTACCGAG+GGG | - | chr2_2:53537965-53537984 | Msa0257580:CDS | 45.0% |
! | GACAGGTTTTCCATCAAGCT+AGG | + | chr2_2:53538048-53538067 | None:intergenic | 45.0% |
! | TAATTGATGGATGGACTCCC+TGG | + | chr2_2:53538212-53538231 | None:intergenic | 45.0% |
AGGGAGTCCATCCATCAATT+AGG | - | chr2_2:53538211-53538230 | Msa0257580:intron | 45.0% | |
GGGAGTCCATCCATCAATTA+GGG | - | chr2_2:53538212-53538231 | Msa0257580:intron | 45.0% | |
GGAGTCCATCCATCAATTAG+GGG | - | chr2_2:53538213-53538232 | Msa0257580:intron | 45.0% | |
CTTCTCCCCTAATTGATGGA+TGG | + | chr2_2:53538221-53538240 | None:intergenic | 45.0% | |
! | GGTCTTGTCAGTTCAATGTC+CGG | + | chr2_2:53538367-53538386 | None:intergenic | 45.0% |
CATTGAACTGACAAGACCTG+TGG | - | chr2_2:53538369-53538388 | Msa0257580:intron | 45.0% | |
! | TTGTTCTGTTCCGGTTTGAG+TGG | + | chr2_2:53538407-53538426 | None:intergenic | 45.0% |
!! | TAGTTGACAGCATCGGTTCA+CGG | - | chr2_2:53538452-53538471 | Msa0257580:intron | 45.0% |
CGCCAATTGTTTCCTCTTGT+TGG | - | chr2_2:53538603-53538622 | Msa0257580:intron | 45.0% | |
AATCGACCACTTCCAACAAG+AGG | + | chr2_2:53538618-53538637 | None:intergenic | 45.0% | |
TCATGGGGTCTTGAATTGGT+TGG | + | chr2_2:53538671-53538690 | None:intergenic | 45.0% | |
GCCAGAAAGAAATCCAGACA+AGG | - | chr2_2:53538695-53538714 | Msa0257580:intron | 45.0% | |
CCCTTGTCTGGATTTCTTTC+TGG | + | chr2_2:53538699-53538718 | None:intergenic | 45.0% | |
AGTACAGCTAATCCCTTGTC+TGG | + | chr2_2:53538711-53538730 | None:intergenic | 45.0% | |
GATGGAGAGTTAACATCCAC+TGG | + | chr2_2:53538809-53538828 | None:intergenic | 45.0% | |
! | ATACGTTTCAGGTCTTGACG+TGG | - | chr2_2:53538930-53538949 | Msa0257580:intron | 45.0% |
AAGTTGGATACGGTCAAGGT+GGG | - | chr2_2:53539046-53539065 | Msa0257580:intron | 45.0% | |
! | TTTCATTTTCCGCTACCGGT+TGG | + | chr2_2:53540210-53540229 | None:intergenic | 45.0% |
! | GTCGTAGAGGTATGCACAAT+CGG | + | chr2_2:53540285-53540304 | None:intergenic | 45.0% |
TAGCTGCTCTATAGTCGTAG+AGG | + | chr2_2:53540298-53540317 | None:intergenic | 45.0% | |
AGACACATAAGAGAGGCAAG+GGG | + | chr2_2:53540505-53540524 | None:intergenic | 45.0% | |
CTTTCAACACACCAGCAACA+AGG | + | chr2_2:53540903-53540922 | None:intergenic | 45.0% | |
AAATTACTCCATGAAGCGCG+AGG | - | chr2_2:53540934-53540953 | Msa0257580:intron | 45.0% | |
AGGCTTGGATGATGTTGTCA+AGG | - | chr2_2:53540954-53540973 | Msa0257580:intron | 45.0% | |
! | TTGTCAAGGTTAGTCATGGG+AGG | - | chr2_2:53540968-53540987 | Msa0257580:intron | 45.0% |
!! | TGTTTGGTGCTAGGCTTTCT+TGG | + | chr2_2:53541792-53541811 | None:intergenic | 45.0% |
TCCACCCATTAAATTCCCTG+AGG | - | chr2_2:53541959-53541978 | Msa0257580:exon | 45.0% | |
CCACCCATTAAATTCCCTGA+GGG | - | chr2_2:53541960-53541979 | Msa0257580:exon | 45.0% | |
GTGTATCCATCCAAAAGAGC+AGG | - | chr2_2:53542020-53542039 | Msa0257580:five_prime_UTR | 45.0% | |
!!! | TTTTTTATTTTTCTTAATTT+TGG | - | chr2_2:53537800-53537819 | Msa0257580:intron | 5.0% |
CTTGTGATGTGGAGAGATCC+AGG | - | chr2_2:53536795-53536814 | Msa0257580:three_prime_UTR | 50.0% | |
GGCCAATTTGTGAAGGATGG+CGG | - | chr2_2:53537387-53537406 | Msa0257580:intron | 50.0% | |
! | AAGGATGGCGGTATCCATCA+TGG | - | chr2_2:53537399-53537418 | Msa0257580:intron | 50.0% |
GTGGTTGAACTATGAGCCAC+AGG | + | chr2_2:53538388-53538407 | None:intergenic | 50.0% | |
!! | GCATCGGTTCACGGTTTAAC+TGG | - | chr2_2:53538461-53538480 | Msa0257580:intron | 50.0% |
! | TTGACGTGGTTCGCACTGAT+AGG | - | chr2_2:53538944-53538963 | Msa0257580:intron | 50.0% |
! | GGTTCGCACTGATAGGACAT+TGG | - | chr2_2:53538951-53538970 | Msa0257580:intron | 50.0% |
GAAGTTGGATACGGTCAAGG+TGG | - | chr2_2:53539045-53539064 | Msa0257580:intron | 50.0% | |
! | AGATGTACTGGTCGCACTCT+TGG | - | chr2_2:53539629-53539648 | Msa0257580:intron | 50.0% |
! | GATGTACTGGTCGCACTCTT+GGG | - | chr2_2:53539630-53539649 | Msa0257580:intron | 50.0% |
! | ATGTACTGGTCGCACTCTTG+GGG | - | chr2_2:53539631-53539650 | Msa0257580:intron | 50.0% |
GTTAGAACACCAACCGGTAG+CGG | - | chr2_2:53540198-53540217 | Msa0257580:intron | 50.0% | |
TCTTAGGCCCGACTGTTTGT+CGG | + | chr2_2:53540443-53540462 | None:intergenic | 50.0% | |
!! | GTAAAAGCTGAGGGCGTCAA+AGG | - | chr2_2:53540781-53540800 | Msa0257580:intron | 50.0% |
CACGCAAGATGTCAGAGGAA+CGG | + | chr2_2:53541227-53541246 | None:intergenic | 50.0% | |
TGCCAAAAAGGCTTGCGTTG+AGG | - | chr2_2:53541289-53541308 | Msa0257580:intron | 50.0% | |
! | AGCCTCAACGCAAGCCTTTT+TGG | + | chr2_2:53541294-53541313 | None:intergenic | 50.0% |
CCCTCAGGGAATTTAATGGG+TGG | + | chr2_2:53541963-53541982 | None:intergenic | 50.0% | |
! | GTACCTATGGGAGGTGTGTC+TGG | - | chr2_2:53540047-53540066 | Msa0257580:CDS | 55.0% |
AAGCCAGACACACCTCCCAT+AGG | + | chr2_2:53540053-53540072 | None:intergenic | 55.0% | |
AATACCCCTGAACCGTACCG+CGG | - | chr2_2:53540400-53540419 | Msa0257580:intron | 55.0% | |
TTAGGCCCGACTGTTTGTCG+GGG | + | chr2_2:53540441-53540460 | None:intergenic | 55.0% | |
CTTAGGCCCGACTGTTTGTC+GGG | + | chr2_2:53540442-53540461 | None:intergenic | 55.0% | |
TGAGCTAGCAAAGCTCCCTC+CGG | + | chr2_2:53540474-53540493 | None:intergenic | 55.0% | |
ACATAAGAGAGGCAAGGGGC+GGG | + | chr2_2:53540501-53540520 | None:intergenic | 55.0% | |
CACATAAGAGAGGCAAGGGG+CGG | + | chr2_2:53540502-53540521 | None:intergenic | 55.0% | |
TACTGGTCGCACTCTTGGGG+TGG | - | chr2_2:53539634-53539653 | Msa0257580:intron | 60.0% | |
ATACCCCTGAACCGTACCGC+GGG | - | chr2_2:53540401-53540420 | Msa0257580:intron | 60.0% | |
TAGGCCCGACTGTTTGTCGG+GGG | + | chr2_2:53540440-53540459 | None:intergenic | 60.0% | |
CAGTCGGGCCTAAGACACCA+AGG | - | chr2_2:53540448-53540467 | Msa0257580:intron | 60.0% | |
CCTAAGACACCAAGGCCGGA+GGG | - | chr2_2:53540456-53540475 | Msa0257580:intron | 60.0% | |
CATAAGAGAGGCAAGGGGCG+GGG | + | chr2_2:53540500-53540519 | None:intergenic | 60.0% | |
ACTCCATGAAGCGCGAGGCT+TGG | - | chr2_2:53540939-53540958 | Msa0257580:intron | 60.0% | |
CATCCAAGCCTCGCGCTTCA+TGG | + | chr2_2:53540945-53540964 | None:intergenic | 60.0% | |
TGGTCGCACTCTTGGGGTGG+AGG | - | chr2_2:53539637-53539656 | Msa0257580:intron | 65.0% | |
TACCCCTGAACCGTACCGCG+GGG | - | chr2_2:53540402-53540421 | Msa0257580:intron | 65.0% | |
ATCCCCCGCGGTACGGTTCA+GGG | + | chr2_2:53540408-53540427 | None:intergenic | 65.0% | |
TATCCCCCGCGGTACGGTTC+AGG | + | chr2_2:53540409-53540428 | None:intergenic | 65.0% | |
GACTGTTTGTCGGGGGAGGG+GGG | + | chr2_2:53540433-53540452 | None:intergenic | 65.0% | |
CGACTGTTTGTCGGGGGAGG+GGG | + | chr2_2:53540434-53540453 | None:intergenic | 65.0% | |
CCGACTGTTTGTCGGGGGAG+GGG | + | chr2_2:53540435-53540454 | None:intergenic | 65.0% | |
CCCCTCCCCCGACAAACAGT+CGG | - | chr2_2:53540432-53540451 | Msa0257580:intron | 65.0% | |
CCCGACTGTTTGTCGGGGGA+GGG | + | chr2_2:53540436-53540455 | None:intergenic | 65.0% | |
CCCTCCCCCGACAAACAGTC+GGG | - | chr2_2:53540433-53540452 | Msa0257580:intron | 65.0% | |
CGGGCCTAAGACACCAAGGC+CGG | - | chr2_2:53540452-53540471 | Msa0257580:intron | 65.0% | |
GCCTAAGACACCAAGGCCGG+AGG | - | chr2_2:53540455-53540474 | Msa0257580:intron | 65.0% | |
!! | CCCTCCGGCCTTGGTGTCTT+AGG | + | chr2_2:53540459-53540478 | None:intergenic | 65.0% |
AGCAAAGCTCCCTCCGGCCT+TGG | + | chr2_2:53540468-53540487 | None:intergenic | 65.0% | |
ACCCCTGAACCGTACCGCGG+GGG | - | chr2_2:53540403-53540422 | Msa0257580:intron | 70.0% | |
TCCCCCGCGGTACGGTTCAG+GGG | + | chr2_2:53540407-53540426 | None:intergenic | 70.0% | |
GGGGGATATCCCCCGCGGTA+CGG | + | chr2_2:53540415-53540434 | None:intergenic | 70.0% | |
GCCCGACTGTTTGTCGGGGG+AGG | + | chr2_2:53540437-53540456 | None:intergenic | 70.0% | |
GGGAGGGGGGATATCCCCCG+CGG | + | chr2_2:53540420-53540439 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 53536596 | 53542182 | 53536596 | ID=Msa0257580;Name=Msa0257580 |
chr2_2 | mRNA | 53536596 | 53542182 | 53536596 | ID=Msa0257580-mRNA-1;Parent=Msa0257580;Name=Msa0257580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=205|0.8|0.90|0.90|0.8|0.90|11|380|416 |
chr2_2 | exon | 53536596 | 53536990 | 53536596 | ID=Msa0257580-mRNA-1:exon:16088;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53537435 | 53537518 | 53537435 | ID=Msa0257580-mRNA-1:exon:16087;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53537803 | 53538063 | 53537803 | ID=Msa0257580-mRNA-1:exon:16086;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53538719 | 53538816 | 53538719 | ID=Msa0257580-mRNA-1:exon:16085;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53539056 | 53539161 | 53539056 | ID=Msa0257580-mRNA-1:exon:16084;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53539295 | 53539383 | 53539295 | ID=Msa0257580-mRNA-1:exon:16083;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53539715 | 53539837 | 53539715 | ID=Msa0257580-mRNA-1:exon:16082;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53539944 | 53540206 | 53539944 | ID=Msa0257580-mRNA-1:exon:16081;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53540617 | 53540639 | 53540617 | ID=Msa0257580-mRNA-1:exon:16080;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53540792 | 53540887 | 53540792 | ID=Msa0257580-mRNA-1:exon:16079;Parent=Msa0257580-mRNA-1 |
chr2_2 | exon | 53541885 | 53542182 | 53541885 | ID=Msa0257580-mRNA-1:exon:16078;Parent=Msa0257580-mRNA-1 |
chr2_2 | five_prime_UTR | 53541978 | 53542182 | 53541978 | ID=Msa0257580-mRNA-1:five_prime_utr;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53541885 | 53541977 | 53541885 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53540792 | 53540887 | 53540792 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53540617 | 53540639 | 53540617 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53539944 | 53540206 | 53539944 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53539715 | 53539837 | 53539715 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53539295 | 53539383 | 53539295 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53539056 | 53539161 | 53539056 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53538719 | 53538816 | 53538719 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53537803 | 53538063 | 53537803 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53537435 | 53537518 | 53537435 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | CDS | 53536976 | 53536990 | 53536976 | ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1 |
chr2_2 | three_prime_UTR | 53536596 | 53536975 | 53536596 | ID=Msa0257580-mRNA-1:three_prime_utr;Parent=Msa0257580-mRNA-1 |
Gene Sequence |
Protein sequence |