AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257580 MtrunA17_Chr2g0319591 90.745 443 14 2 1 416 1 443 0.0 815
Msa0257580 MtrunA17_Chr4g0041821 70.362 442 96 6 1 414 1 435 0.0 633
Msa0257580 MtrunA17_Chr1g0183581 47.619 441 174 5 1 414 12 422 3.57e-150 432
Msa0257580 MtrunA17_Chr2g0329651 50.581 172 84 1 143 314 360 530 1.44e-51 184
Msa0257580 MtrunA17_Chr4g0064141 41.096 146 82 2 158 301 431 574 6.59e-31 125
Msa0257580 MtrunA17_Chr3g0127461 32.751 229 124 3 177 405 338 536 7.14e-30 121
Msa0257580 MtrunA17_Chr1g0146661 30.837 227 127 5 179 405 385 581 4.26e-28 116
Msa0257580 MtrunA17_Chr8g0378291 27.329 161 99 4 157 299 222 382 2.22e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257580 AT4G27100.2 66.516 442 112 5 1 415 1 433 0.0 586
Msa0257580 AT4G27100.1 66.136 440 113 5 1 413 1 431 0.0 582
Msa0257580 AT5G54780.1 64.269 431 115 5 1 403 1 420 0.0 550
Msa0257580 AT2G20440.1 48.409 440 174 6 1 413 7 420 1.02e-151 436
Msa0257580 AT2G20440.2 48.409 440 174 6 1 413 7 420 1.02e-151 436
Msa0257580 AT4G28550.1 48.182 440 175 6 1 413 7 420 1.22e-149 431
Msa0257580 AT2G20440.4 50.909 330 136 4 84 413 1 304 1.37e-122 358
Msa0257580 AT2G20440.3 48.773 326 119 4 1 299 7 311 8.99e-111 330
Msa0257580 AT4G28550.3 49.074 324 117 4 1 297 7 309 9.67e-111 329
Msa0257580 AT4G28550.2 48.923 325 118 4 1 298 7 310 3.00e-110 327
Msa0257580 AT3G59570.1 37.386 329 155 4 131 412 339 663 8.82e-59 204
Msa0257580 AT2G43490.6 53.801 171 78 1 135 305 335 504 1.51e-55 196
Msa0257580 AT2G43490.8 53.801 171 78 1 135 305 335 504 1.51e-55 196
Msa0257580 AT2G43490.5 53.801 171 78 1 135 305 339 508 1.66e-55 195
Msa0257580 AT2G43490.1 53.801 171 78 1 135 305 339 508 1.73e-55 196
Msa0257580 AT2G43490.7 53.801 171 78 1 135 305 339 508 1.73e-55 196
Msa0257580 AT2G43490.3 53.801 171 78 1 135 305 339 508 1.73e-55 196
Msa0257580 AT2G43490.2 53.801 171 78 1 135 305 339 508 1.73e-55 196
Msa0257580 AT2G43490.4 53.801 171 78 1 135 305 339 508 1.74e-55 196
Msa0257580 AT3G59570.2 51.429 175 84 1 131 305 339 512 3.34e-52 186
Msa0257580 AT3G59570.3 51.429 175 84 1 131 305 339 512 4.75e-52 186
Msa0257580 AT5G52580.2 28.346 254 123 4 158 402 456 659 2.61e-29 120
Msa0257580 AT5G41940.1 34.802 227 118 7 179 405 345 541 2.76e-29 120
Msa0257580 AT5G52580.1 28.346 254 123 4 158 402 439 642 2.91e-29 120
Msa0257580 AT5G52580.3 28.346 254 123 4 158 402 445 648 3.13e-29 120
Msa0257580 AT5G53570.1 44.715 123 66 1 179 301 338 458 1.30e-28 118
Msa0257580 AT5G53570.2 44.715 123 66 1 179 301 365 485 1.73e-28 118
Msa0257580 AT5G24390.1 40.800 125 72 1 177 301 315 437 2.82e-27 114
Msa0257580 AT3G49350.1 28.194 227 133 3 179 405 330 526 2.08e-26 111
Msa0257580 AT1G04830.1 29.651 172 98 6 154 306 223 390 2.97e-15 77.8
Msa0257580 AT1G04830.2 29.651 172 98 6 154 306 223 390 3.14e-15 77.8

Find 109 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGTCTGGATTTCTTTC+TGG 0.022455 2_2:+53540060 None:intergenic
AAGAAAACTTGTCAAAATTA+TGG 0.190885 2_2:-53539767 Msa0257580:CDS
ATAAAATACCTATATGTTTA+TGG 0.198183 2_2:+53539047 None:intergenic
TGTTTGGTGCTAGGCTTTCT+TGG 0.220830 2_2:+53536967 None:intergenic
CCTATATGTTTATGGAGTTT+TGG 0.239607 2_2:+53539055 None:intergenic
GCATTGTTGTTGAATGTATA+TGG 0.242516 2_2:-53542144 Msa0257580:five_prime_UTR
CGCCAATTGTTTCCTCTTGT+TGG 0.248172 2_2:-53540153 Msa0257580:CDS
CTTCATTATTGTCTCCTATA+AGG 0.248619 2_2:+53536870 None:intergenic
GGAGGCTCAACTAAGTAATT+TGG 0.270154 2_2:-53539101 Msa0257580:CDS
CTGTCAATGTTATACCTTAT+AGG 0.304756 2_2:-53536884 Msa0257580:three_prime_UTR
TGGTTTGCAGAATTGATTAA+AGG 0.313100 2_2:-53536829 Msa0257580:three_prime_UTR
AAACACTAAGTCCAAGAAAA+TGG 0.315609 2_2:-53540858 Msa0257580:CDS
CATCCAAGCCTCGCGCTTCA+TGG 0.324462 2_2:+53537814 None:intergenic
ATGATGAAGCAGACGCATTT+TGG 0.333770 2_2:-53539322 Msa0257580:CDS
GATGTACTGGTCGCACTCTT+GGG 0.336065 2_2:-53539126 Msa0257580:CDS
AGTTCCCTCAGGGAATTTAA+TGG 0.338293 2_2:+53536792 None:intergenic
AGATGTACTGGTCGCACTCT+TGG 0.345747 2_2:-53539127 Msa0257580:CDS
AGGAAATCTAGATGCCAAAA+AGG 0.346102 2_2:-53537479 Msa0257580:CDS
ATGTTAACTCTCCATCAAAT+AGG 0.350184 2_2:-53539943 Msa0257580:intron
TCATACATCAAGAACAAATA+AGG 0.353993 2_2:+53538017 None:intergenic
AGAAAACTTGTCAAAATTAT+GGG 0.382772 2_2:-53539766 Msa0257580:CDS
TACTTCCTCAAGATAATAAT+AGG 0.382978 2_2:-53540029 Msa0257580:CDS
ATTTCTTTCTGGCATAATCA+TGG 0.383727 2_2:+53540071 None:intergenic
TTTGTGATTCATTGTACCTA+TGG 0.385679 2_2:-53538722 Msa0257580:CDS
AAATTCACAAACCTATTTGA+TGG 0.386030 2_2:+53539932 None:intergenic
TTTACAGAATCTATACTTGA+AGG 0.394310 2_2:+53540006 None:intergenic
GTTCCCTCAGGGAATTTAAT+GGG 0.404583 2_2:+53536793 None:intergenic
GAATTTAATGGGTGGAAACT+TGG 0.405507 2_2:+53536804 None:intergenic
CCAAAACTCCATAAACATAT+AGG 0.406934 2_2:-53539055 Msa0257580:intron
GCAACAAGGAAAACAGATAT+AGG 0.410679 2_2:+53537870 None:intergenic
ATTTACTCAAGAAGGGTATC+TGG 0.414638 2_2:-53540827 Msa0257580:CDS
GACCACTCAATGACATGAAA+TGG 0.415891 2_2:+53536628 None:intergenic
CATCTCAAGATTCAAGATCA+AGG 0.418043 2_2:-53541884 Msa0257580:intron
GAGAGACAAAATATGAGAAA+TGG 0.418641 2_2:-53537918 Msa0257580:CDS
ATCATTACTGCAATCTGGTC+TGG 0.419284 2_2:+53541912 None:intergenic
TTTCTTTCTGGCATAATCAT+GGG 0.419894 2_2:+53540072 None:intergenic
CATCAAGAAGAATTATCATT+GGG 0.422403 2_2:+53539342 None:intergenic
CATTTGAGATGATTAAATGA+TGG 0.423009 2_2:-53536922 Msa0257580:three_prime_UTR
CAAGAAGGGTATCTGGATAT+AGG 0.425363 2_2:-53540820 Msa0257580:CDS
CTTGTGATGTGGAGAGATCC+AGG 0.427729 2_2:-53541961 Msa0257580:exon
ATATTCTTGCAGTTTATGCT+TGG 0.433846 2_2:-53539743 Msa0257580:CDS
CTTGATCTTGAATCTTGAGA+TGG 0.445826 2_2:+53541885 None:intergenic
ATAATCATGGGGTCTTGAAT+TGG 0.449407 2_2:+53540084 None:intergenic
ACTTGTCAACTCAAAGAGAA+TGG 0.449458 2_2:+53542119 None:intergenic
TCATCAAGAAGAATTATCAT+TGG 0.451073 2_2:+53539341 None:intergenic
GCTTGGATAGATAAAGAAGT+TGG 0.451389 2_2:-53539726 Msa0257580:CDS
TTGTGATTCATTGTACCTAT+GGG 0.454384 2_2:-53538721 Msa0257580:CDS
TTGTTTCCTCTTGTTGGAAG+TGG 0.462346 2_2:-53540147 Msa0257580:CDS
CATCATTTAATCATCTCAAA+TGG 0.467433 2_2:+53536923 None:intergenic
AGTACAGCTAATCCCTTGTC+TGG 0.469428 2_2:+53540048 None:intergenic
CGAGGAAATTTCAGATGTAC+TGG 0.471593 2_2:-53539139 Msa0257580:CDS
GGAACATCATTACTGCAATC+TGG 0.472237 2_2:+53541907 None:intergenic
CATGATGCATTTACTCAAGA+AGG 0.472341 2_2:-53540835 Msa0257580:CDS
TTGACGTGGTTCGCACTGAT+AGG 0.478186 2_2:-53539812 Msa0257580:CDS
AAAGAATCAGCTGAAACTCC+TGG 0.480245 2_2:+53541943 None:intergenic
CAATGGATATGTTTGGTGCT+AGG 0.484607 2_2:+53536958 None:intergenic
CAGATATTGAATGACACAAC+AGG 0.486107 2_2:-53537499 Msa0257580:CDS
TGGTCGCACTCTTGGGGTGG+AGG 0.488394 2_2:-53539119 Msa0257580:CDS
GATGGAGAGTTAACATCCAC+TGG 0.490352 2_2:+53539950 None:intergenic
TGGCCATCATCAGTAATTAC+AGG 0.493011 2_2:+53540108 None:intergenic
ACTCCATGAAGCGCGAGGCT+TGG 0.495463 2_2:-53537817 Msa0257580:CDS
TTCCAACAAGAGGAAACAAT+TGG 0.498284 2_2:+53540151 None:intergenic
TTCTTTCTGGCATAATCATG+GGG 0.501541 2_2:+53540073 None:intergenic
TAGGTACAATGAATCACAAA+AGG 0.507991 2_2:+53538725 None:intergenic
TAACATACAACAGTTCCCTC+AGG 0.510849 2_2:+53536781 None:intergenic
CTTGTCAACTCAAAGAGAAT+GGG 0.517137 2_2:+53542120 None:intergenic
ATTTGAGATGATTAAATGAT+GGG 0.519694 2_2:-53536921 Msa0257580:three_prime_UTR
GTAAAAGCTGAGGGCGTCAA+AGG 0.527510 2_2:-53537975 Msa0257580:CDS
TCACCTGTAATTACTGATGA+TGG 0.529934 2_2:-53540111 Msa0257580:CDS
CACAAACACAAGAAGAAACA+AGG 0.539544 2_2:+53542019 None:intergenic
AGGAAAACAGATATAGGAAG+AGG 0.540547 2_2:+53537876 None:intergenic
GAATTATCATTGGGGAGCAT+AGG 0.542492 2_2:+53539351 None:intergenic
TTGATCTTGAATCTTGAGAT+GGG 0.545349 2_2:+53541886 None:intergenic
GTGTATCCATCCAAAAGAGC+AGG 0.551455 2_2:-53536736 Msa0257580:three_prime_UTR
AGTCAATCAAATTTAGAGTG+TGG 0.558511 2_2:-53536849 Msa0257580:three_prime_UTR
TACTGGTCGCACTCTTGGGG+TGG 0.558646 2_2:-53539122 Msa0257580:CDS
GAAGGCCTATTATTATCTTG+AGG 0.560973 2_2:+53540024 None:intergenic
TGGAGAACAGAACATATTGG+TGG 0.562536 2_2:-53538804 Msa0257580:intron
TCAGGATGCAATATGCTACA+TGG 0.565622 2_2:-53540188 Msa0257580:intron
TCATGGGGTCTTGAATTGGT+TGG 0.566507 2_2:+53540088 None:intergenic
ATTTAATCATCTCAAATGGA+AGG 0.566778 2_2:+53536927 None:intergenic
ATGTACTGGTCGCACTCTTG+GGG 0.573792 2_2:-53539125 Msa0257580:CDS
AAAGAAGTTGGATACGGTCA+AGG 0.579690 2_2:-53539714 Msa0257580:intron
TGATTCATTGTACCTATGGG+AGG 0.581982 2_2:-53538718 Msa0257580:intron
ATCAGCTTCTGTAAAAGCTG+AGG 0.587749 2_2:-53537985 Msa0257580:CDS
CTTTCAACACACCAGCAACA+AGG 0.588036 2_2:+53537856 None:intergenic
ATCCATTTCATGTCATTGAG+TGG 0.590110 2_2:-53536630 Msa0257580:three_prime_UTR
AATCGACCACTTCCAACAAG+AGG 0.590144 2_2:+53540141 None:intergenic
ATAGATAAAGAAGTTGGATA+CGG 0.592454 2_2:-53539720 Msa0257580:CDS
CCACCCATTAAATTCCCTGA+GGG 0.594717 2_2:-53536796 Msa0257580:three_prime_UTR
AACATACAACAGTTCCCTCA+GGG 0.598715 2_2:+53536782 None:intergenic
AGGCTTGGATGATGTTGTCA+AGG 0.604218 2_2:-53537802 Msa0257580:intron
TCAGCTTCTGTAAAAGCTGA+GGG 0.607394 2_2:-53537984 Msa0257580:CDS
ATGATGCATTTACTCAAGAA+GGG 0.608798 2_2:-53540834 Msa0257580:CDS
GGTTCGCACTGATAGGACAT+TGG 0.613291 2_2:-53539805 Msa0257580:CDS
CCAGAAAGAAATCCAGACAA+GGG 0.614978 2_2:-53540060 Msa0257580:CDS
AGAACAGAACATATTGGTGG+AGG 0.618638 2_2:-53538801 Msa0257580:intron
AAGCCAGACACACCTCCCAT+AGG 0.625296 2_2:+53538706 None:intergenic
GCCAGAAAGAAATCCAGACA+AGG 0.637010 2_2:-53540061 Msa0257580:CDS
CCCTCAGGGAATTTAATGGG+TGG 0.639260 2_2:+53536796 None:intergenic
GCAAAGTCAATACGACAATG+TGG 0.656189 2_2:-53537948 Msa0257580:CDS
CTTTGAGACGAATCTACCGA+GGG 0.661418 2_2:-53540792 Msa0257580:CDS
ATACGTTTCAGGTCTTGACG+TGG 0.662348 2_2:-53539826 Msa0257580:intron
CAGACAAGAAACTAATCCAG+TGG 0.668020 2_2:-53539966 Msa0257580:CDS
ATCAAGAAGAATTATCATTG+GGG 0.677023 2_2:+53539343 None:intergenic
AAATTACTCCATGAAGCGCG+AGG 0.681422 2_2:-53537822 Msa0257580:CDS
TCCACCCATTAAATTCCCTG+AGG 0.686227 2_2:-53536797 Msa0257580:three_prime_UTR
ACTTTGAGACGAATCTACCG+AGG 0.700779 2_2:-53540793 Msa0257580:CDS
TTTGAGACGAATCTACCGAG+GGG 0.798701 2_2:-53540791 Msa0257580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAAGTTTTTTTTATAAA+TGG - chr2_2:53537199-53537218 Msa0257580:intron 10.0%
!!! TTTTTTTTATTCTAATAAGA+AGG - chr2_2:53539171-53539190 Msa0257580:intron 10.0%
!!! TTTTATTCAACAAATTTTAA+TGG + chr2_2:53539876-53539895 None:intergenic 10.0%
!!! AAAGTTTGATTTTTATTTCT+GGG - chr2_2:53536911-53536930 Msa0257580:three_prime_UTR 15.0%
!!! GTTTTTGTTATAATTTTGTT+TGG - chr2_2:53536933-53536952 Msa0257580:three_prime_UTR 15.0%
!! ATAAAATACCTATATGTTTA+TGG + chr2_2:53539712-53539731 None:intergenic 15.0%
!!! AATTTACTGTCTTTTAATTT+TGG - chr2_2:53539932-53539951 Msa0257580:intron 15.0%
!!! ATTTACATTTTATTGAACAA+TGG - chr2_2:53540098-53540117 Msa0257580:CDS 15.0%
!! CATATATATATATAGTACTA+CGG - chr2_2:53540364-53540383 Msa0257580:intron 15.0%
!!! ATATCATAAACTGTTTTAAT+GGG + chr2_2:53540622-53540641 None:intergenic 15.0%
!!! TATATCATAAACTGTTTTAA+TGG + chr2_2:53540623-53540642 None:intergenic 15.0%
!! AATTTAACACATACATAAAA+AGG + chr2_2:53541198-53541217 None:intergenic 15.0%
!! CAGAAATAAAAATCAAACTT+TGG + chr2_2:53536912-53536931 None:intergenic 20.0%
!!! CAAAGTTTGATTTTTATTTC+TGG - chr2_2:53536910-53536929 Msa0257580:three_prime_UTR 20.0%
!!! TTTAAGATAGTGTCTTTTTT+TGG - chr2_2:53537568-53537587 Msa0257580:intron 20.0%
!!! TTTTCTTAATTTTGGAAACT+CGG - chr2_2:53537808-53537827 Msa0257580:CDS 20.0%
!! ATAATCATCAATACTTTCAA+GGG + chr2_2:53538099-53538118 None:intergenic 20.0%
!!! CAAGAATTTTTATGTTTATG+TGG - chr2_2:53538149-53538168 Msa0257580:intron 20.0%
!! TTGTTAAAAAATTTCAAACC+AGG - chr2_2:53538191-53538210 Msa0257580:intron 20.0%
!! TGTTAAAAAATTTCAAACCA+GGG - chr2_2:53538192-53538211 Msa0257580:intron 20.0%
!! ACATTGAAACAATTATGAAA+TGG + chr2_2:53538331-53538350 None:intergenic 20.0%
!! TTACCATGTGATTTATATTA+CGG + chr2_2:53538889-53538908 None:intergenic 20.0%
!! AAGAAAACTTGTCAAAATTA+TGG - chr2_2:53538989-53539008 Msa0257580:intron 20.0%
!! AGAAAACTTGTCAAAATTAT+GGG - chr2_2:53538990-53539009 Msa0257580:intron 20.0%
!! AATAAACCAAGTAAACAAAT+TGG - chr2_2:53539201-53539220 Msa0257580:intron 20.0%
!! TAAAAGAGATAATAGAGATA+AGG + chr2_2:53539494-53539513 None:intergenic 20.0%
!! TTTCCATTAATAATTTCTTC+AGG + chr2_2:53539832-53539851 None:intergenic 20.0%
!! CGTAGTACTATATATATATA+TGG + chr2_2:53540366-53540385 None:intergenic 20.0%
!!! TATCATAAACTGTTTTAATG+GGG + chr2_2:53540621-53540640 None:intergenic 20.0%
!!! AAATTTTTAACAGATGATGT+GGG - chr2_2:53540702-53540721 Msa0257580:intron 20.0%
!! TCACAAAAAATATTTGAGAA+AGG - chr2_2:53541322-53541341 Msa0257580:intron 20.0%
!! AAACAAAAAATGTTAACTAG+TGG - chr2_2:53541465-53541484 Msa0257580:intron 20.0%
!! AAAAAATCAATGGATATGTT+TGG + chr2_2:53541808-53541827 None:intergenic 20.0%
!!! ATTTGAGATGATTAAATGAT+GGG - chr2_2:53541835-53541854 Msa0257580:intron 20.0%
!! TAATACAAAAAAGAAAAGAC+AGG - chr2_2:53542095-53542114 Msa0257580:five_prime_UTR 20.0%
! ATTATTGGATTGATGGAAAT+TGG - chr2_2:53536988-53537007 Msa0257580:intron 25.0%
!! AGAAACTTTTGTTCATTTTG+AGG - chr2_2:53537278-53537297 Msa0257580:intron 25.0%
!! GAAACTTTTGTTCATTTTGA+GGG - chr2_2:53537279-53537298 Msa0257580:intron 25.0%
!! AAACTTTTGTTCATTTTGAG+GGG - chr2_2:53537280-53537299 Msa0257580:intron 25.0%
! TTAACACACAATGTTATCAA+CGG + chr2_2:53537460-53537479 None:intergenic 25.0%
! TGATAACATTGTGTGTTAAA+TGG - chr2_2:53537461-53537480 Msa0257580:CDS 25.0%
! GATAACATTGTGTGTTAAAT+GGG - chr2_2:53537462-53537481 Msa0257580:CDS 25.0%
!! ATGCAAATGATTTTGTGTTA+AGG + chr2_2:53537726-53537745 None:intergenic 25.0%
!! ACTTCTTGATTGTTATTACA+TGG - chr2_2:53537863-53537882 Msa0257580:CDS 25.0%
! AAATATGATTAAGATCAGAC+AGG + chr2_2:53538065-53538084 None:intergenic 25.0%
! CATAATCATCAATACTTTCA+AGG + chr2_2:53538100-53538119 None:intergenic 25.0%
!!! CTTGAAAGTATTGATGATTA+TGG - chr2_2:53538098-53538117 Msa0257580:intron 25.0%
!!! CAATGTTTTAAAAACTCAAC+CGG - chr2_2:53538345-53538364 Msa0257580:intron 25.0%
! AGTTCAAGTAATGATCTTAT+AGG + chr2_2:53538528-53538547 None:intergenic 25.0%
!! ACTTTTATGTTTATGTCATC+AGG - chr2_2:53538550-53538569 Msa0257580:intron 25.0%
! TACTTCCTCAAGATAATAAT+AGG - chr2_2:53538727-53538746 Msa0257580:CDS 25.0%
! TTTACAGAATCTATACTTGA+AGG + chr2_2:53538753-53538772 None:intergenic 25.0%
! AAATTCACAAACCTATTTGA+TGG + chr2_2:53538827-53538846 None:intergenic 25.0%
! ACGTATTATGTGCATAAAAA+GGG + chr2_2:53538916-53538935 None:intergenic 25.0%
! AACGTATTATGTGCATAAAA+AGG + chr2_2:53538917-53538936 None:intergenic 25.0%
! ATAGATAAAGAAGTTGGATA+CGG - chr2_2:53539036-53539055 Msa0257580:intron 25.0%
! AAAAAAAACTACTACTTGCA+TGG + chr2_2:53539156-53539175 None:intergenic 25.0%
!! TTGTTTCCAATTTGTTTACT+TGG + chr2_2:53539210-53539229 None:intergenic 25.0%
! ATCAAGAAGAATTATCATTG+GGG + chr2_2:53539416-53539435 None:intergenic 25.0%
! CATCAAGAAGAATTATCATT+GGG + chr2_2:53539417-53539436 None:intergenic 25.0%
! TCATCAAGAAGAATTATCAT+TGG + chr2_2:53539418-53539437 None:intergenic 25.0%
! ATGCCTGAAGAAATTATTAA+TGG - chr2_2:53539826-53539845 Msa0257580:intron 25.0%
! TTTCTTCAACATAACAAAAG+AGG + chr2_2:53539901-53539920 None:intergenic 25.0%
!!! CTTTTGTTATGTTGAAGAAA+TGG - chr2_2:53539901-53539920 Msa0257580:intron 25.0%
! CTAACACTATCTCATTAATT+CGG + chr2_2:53540183-53540202 None:intergenic 25.0%
!!! ATCATAAACTGTTTTAATGG+GGG + chr2_2:53540620-53540639 None:intergenic 25.0%
!! GAAATTTTTAACAGATGATG+TGG - chr2_2:53540701-53540720 Msa0257580:intron 25.0%
! TCATACATCAAGAACAAATA+AGG + chr2_2:53540742-53540761 None:intergenic 25.0%
! AGACTTTGCAATAAATGTAT+TGG + chr2_2:53541425-53541444 None:intergenic 25.0%
! TTTATTGCAAAGTCTTAGAT+TGG - chr2_2:53541430-53541449 Msa0257580:intron 25.0%
! AAAATGTTAACTAGTGGTTA+AGG - chr2_2:53541471-53541490 Msa0257580:intron 25.0%
! AATAGTCATAAGCAATAAGT+TGG + chr2_2:53541599-53541618 None:intergenic 25.0%
! AATAAACTTTAATTGCTTGC+AGG - chr2_2:53541766-53541785 Msa0257580:intron 25.0%
! AATGGAAGGAAAAAAATCAA+TGG + chr2_2:53541818-53541837 None:intergenic 25.0%
! ATTTAATCATCTCAAATGGA+AGG + chr2_2:53541832-53541851 None:intergenic 25.0%
! CATCATTTAATCATCTCAAA+TGG + chr2_2:53541836-53541855 None:intergenic 25.0%
!! CATTTGAGATGATTAAATGA+TGG - chr2_2:53541834-53541853 Msa0257580:intron 25.0%
! GCATTGTTGTTGAATGTATA+TGG - chr2_2:53536612-53536631 Msa0257580:three_prime_UTR 30.0%
!! AGTTGACAAGTTTTTGTTTC+TGG - chr2_2:53536649-53536668 Msa0257580:three_prime_UTR 30.0%
!! GTTGACAAGTTTTTGTTTCT+GGG - chr2_2:53536650-53536669 Msa0257580:three_prime_UTR 30.0%
! ATTTTCAGTTTCTTGTGATG+TGG - chr2_2:53536784-53536803 Msa0257580:three_prime_UTR 30.0%
TTGATCTTGAATCTTGAGAT+GGG + chr2_2:53536873-53536892 None:intergenic 30.0%
! TTGGTGATATAAACTGTTGT+TGG - chr2_2:53536952-53536971 Msa0257580:three_prime_UTR 30.0%
TGGTGATATAAACTGTTGTT+GGG - chr2_2:53536953-53536972 Msa0257580:three_prime_UTR 30.0%
TATAAACTGTTGTTGGGTAT+AGG - chr2_2:53536959-53536978 Msa0257580:exon 30.0%
GAAGTGTATTATTGGATTGA+TGG - chr2_2:53536981-53537000 Msa0257580:intron 30.0%
TAGTACATAACAATGAAGCA+CGG + chr2_2:53537140-53537159 None:intergenic 30.0%
!! AGCTTGTTAAGTTGATAAAC+AGG - chr2_2:53537254-53537273 Msa0257580:intron 30.0%
! TTTCAGATAGTTGATATGTG+AGG - chr2_2:53537313-53537332 Msa0257580:intron 30.0%
TTGAATGTGATGACAAGTAT+TGG - chr2_2:53537336-53537355 Msa0257580:intron 30.0%
AAACACTAAGTCCAAGAAAA+TGG - chr2_2:53537898-53537917 Msa0257580:CDS 30.0%
ATGATGCATTTACTCAAGAA+GGG - chr2_2:53537922-53537941 Msa0257580:CDS 30.0%
! GAAGTTTGGGAATTTTTACT+TGG - chr2_2:53538237-53538256 Msa0257580:intron 30.0%
! GTCTAGAATTCAGAAATGTT+GGG + chr2_2:53538506-53538525 None:intergenic 30.0%
! TTTCTTTCTGGCATAATCAT+GGG + chr2_2:53538687-53538706 None:intergenic 30.0%
! ATTTCTTTCTGGCATAATCA+TGG + chr2_2:53538688-53538707 None:intergenic 30.0%
ATGTTAACTCTCCATCAAAT+AGG - chr2_2:53538813-53538832 Msa0257580:intron 30.0%
TCACCGTAATATAAATCACA+TGG - chr2_2:53538883-53538902 Msa0257580:intron 30.0%
TTATGCACATAATACGTTTC+AGG - chr2_2:53538919-53538938 Msa0257580:intron 30.0%
ATATTCTTGCAGTTTATGCT+TGG - chr2_2:53539013-53539032 Msa0257580:intron 30.0%
!! AGTACTGATCTATTTCAAAG+AGG + chr2_2:53539078-53539097 None:intergenic 30.0%
TAGATACTTCTATCCAACTA+TGG - chr2_2:53539103-53539122 Msa0257580:CDS 30.0%
TTCTCGATATATCAATCTAG+TGG + chr2_2:53539248-53539267 None:intergenic 30.0%
AACAATTCACAATTCTGAAC+AGG - chr2_2:53539373-53539392 Msa0257580:intron 30.0%
AAGTATGTAATTCAAGTGCT+CGG - chr2_2:53539543-53539562 Msa0257580:intron 30.0%
! CCTATATGTTTATGGAGTTT+TGG + chr2_2:53539704-53539723 None:intergenic 30.0%
CCAAAACTCCATAAACATAT+AGG - chr2_2:53539701-53539720 Msa0257580:intron 30.0%
! TCGAATTTTCTAACTCGATT+TGG - chr2_2:53539769-53539788 Msa0257580:CDS 30.0%
! CGAATTTTCTAACTCGATTT+GGG - chr2_2:53539770-53539789 Msa0257580:CDS 30.0%
!! TTTTGGAGAACAGAACATAT+TGG - chr2_2:53539949-53539968 Msa0257580:CDS 30.0%
TAGGTACAATGAATCACAAA+AGG + chr2_2:53540034-53540053 None:intergenic 30.0%
TTTGTGATTCATTGTACCTA+TGG - chr2_2:53540034-53540053 Msa0257580:CDS 30.0%
TTGTGATTCATTGTACCTAT+GGG - chr2_2:53540035-53540054 Msa0257580:CDS 30.0%
AGAAAGCAAATTGCAAACAA+TGG - chr2_2:53540231-53540250 Msa0257580:intron 30.0%
CATATATAGACACATAAGAG+AGG + chr2_2:53540512-53540531 None:intergenic 30.0%
GTAAAACTATCTGTTGAGTA+TGG + chr2_2:53540537-53540556 None:intergenic 30.0%
GAGAGACAAAATATGAGAAA+TGG - chr2_2:53540838-53540857 Msa0257580:CDS 30.0%
! TGAAATTGATGTTCCCTTTT+TGG - chr2_2:53541054-53541073 Msa0257580:intron 30.0%
!! CATAGCTTGTTAACCAAAAA+GGG + chr2_2:53541070-53541089 None:intergenic 30.0%
!! ACATAGCTTGTTAACCAAAA+AGG + chr2_2:53541071-53541090 None:intergenic 30.0%
! AAGTTTTACATCGTACCATA+TGG + chr2_2:53541718-53541737 None:intergenic 30.0%
CTGTCAATGTTATACCTTAT+AGG - chr2_2:53541872-53541891 Msa0257580:intron 30.0%
CTTCATTATTGTCTCCTATA+AGG + chr2_2:53541889-53541908 None:intergenic 30.0%
! AGTCAATCAAATTTAGAGTG+TGG - chr2_2:53541907-53541926 Msa0257580:CDS 30.0%
! TGGTTTGCAGAATTGATTAA+AGG - chr2_2:53541927-53541946 Msa0257580:CDS 30.0%
! ACAATTTTTACCTGCTCTTT+TGG + chr2_2:53542033-53542052 None:intergenic 30.0%
CTTGTCAACTCAAAGAGAAT+GGG + chr2_2:53536639-53536658 None:intergenic 35.0%
ACTTGTCAACTCAAAGAGAA+TGG + chr2_2:53536640-53536659 None:intergenic 35.0%
CACAAACACAAGAAGAAACA+AGG + chr2_2:53536740-53536759 None:intergenic 35.0%
CTTGATCTTGAATCTTGAGA+TGG + chr2_2:53536874-53536893 None:intergenic 35.0%
CATCTCAAGATTCAAGATCA+AGG - chr2_2:53536872-53536891 Msa0257580:three_prime_UTR 35.0%
! GGGTATAGGAAGTGTATTAT+TGG - chr2_2:53536973-53536992 Msa0257580:intron 35.0%
GATTGTCAAAAAATCCTCCA+TGG + chr2_2:53537362-53537381 None:intergenic 35.0%
!!! GGATTTTTTGACAATCTCCA+TGG - chr2_2:53537366-53537385 Msa0257580:intron 35.0%
! GTATCCATCATGGTGTTTTA+TGG - chr2_2:53537409-53537428 Msa0257580:intron 35.0%
!! ATTGTGTGTTAAATGGGTTG+TGG - chr2_2:53537468-53537487 Msa0257580:CDS 35.0%
CTTTGCTAAGTTGTCAGTAA+TGG - chr2_2:53537493-53537512 Msa0257580:CDS 35.0%
!!! GTTGTCAGTAATGGTTTTGT+TGG - chr2_2:53537502-53537521 Msa0257580:intron 35.0%
CTAGACTTTCAATCTCACAA+TGG - chr2_2:53537769-53537788 Msa0257580:intron 35.0%
! TGATTGTTATTACATGGCTC+AGG - chr2_2:53537869-53537888 Msa0257580:CDS 35.0%
!!! AATGCATCATGCCATTTTCT+TGG + chr2_2:53537912-53537931 None:intergenic 35.0%
CATGATGCATTTACTCAAGA+AGG - chr2_2:53537921-53537940 Msa0257580:CDS 35.0%
!! ATTTACTCAAGAAGGGTATC+TGG - chr2_2:53537929-53537948 Msa0257580:CDS 35.0%
ATATAAGAGCAAATACCCCT+CGG + chr2_2:53537983-53538002 None:intergenic 35.0%
ATATCTGAATCCTAGCTTGA+TGG - chr2_2:53538035-53538054 Msa0257580:CDS 35.0%
ATCAATTAGGGGAGAAGTTT+GGG - chr2_2:53538224-53538243 Msa0257580:intron 35.0%
TTTCGTCAAATGTACTCTTC+GGG + chr2_2:53538272-53538291 None:intergenic 35.0%
CTTTCGTCAAATGTACTCTT+CGG + chr2_2:53538273-53538292 None:intergenic 35.0%
CAACTATTCGGTTATTTGAG+TGG + chr2_2:53538438-53538457 None:intergenic 35.0%
GTTTAACTGGTTGAACTGTA+TGG - chr2_2:53538474-53538493 Msa0257580:intron 35.0%
! GGTCTAGAATTCAGAAATGT+TGG + chr2_2:53538507-53538526 None:intergenic 35.0%
TTCCAACAAGAGGAAACAAT+TGG + chr2_2:53538608-53538627 None:intergenic 35.0%
TCACCTGTAATTACTGATGA+TGG - chr2_2:53538645-53538664 Msa0257580:intron 35.0%
ATAATCATGGGGTCTTGAAT+TGG + chr2_2:53538675-53538694 None:intergenic 35.0%
! TTCTTTCTGGCATAATCATG+GGG + chr2_2:53538686-53538705 None:intergenic 35.0%
GAAGGCCTATTATTATCTTG+AGG + chr2_2:53538735-53538754 None:intergenic 35.0%
! CTTGTGCACTATTTTGTAGT+AGG - chr2_2:53538849-53538868 Msa0257580:intron 35.0%
GCTTGGATAGATAAAGAAGT+TGG - chr2_2:53539030-53539049 Msa0257580:intron 35.0%
TCAACGTGAAATACCATAGT+TGG + chr2_2:53539119-53539138 None:intergenic 35.0%
TTGCAAGGTTGCAAGAAAAA+TGG + chr2_2:53539299-53539318 None:intergenic 35.0%
TGCAACCTTGCAACAAATAA+TGG - chr2_2:53539306-53539325 Msa0257580:CDS 35.0%
! ACTTGCCATTATTTGTTGCA+AGG + chr2_2:53539314-53539333 None:intergenic 35.0%
TAGCTTAGAGACATTGCAAA+TGG + chr2_2:53539345-53539364 None:intergenic 35.0%
!!! ATTTTCTAACTCGATTTGGG+TGG - chr2_2:53539773-53539792 Msa0257580:CDS 35.0%
!! GCGACTATGTATTTGCTTTT+CGG - chr2_2:53539977-53539996 Msa0257580:CDS 35.0%
!! ATTTGCTTTTCGGATGCTTA+TGG - chr2_2:53539987-53540006 Msa0257580:CDS 35.0%
AGGAAAACAGATATAGGAAG+AGG + chr2_2:53540883-53540902 None:intergenic 35.0%
GCAACAAGGAAAACAGATAT+AGG + chr2_2:53540889-53540908 None:intergenic 35.0%
! ATATCTGTTTTCCTTGTTGC+TGG - chr2_2:53540889-53540908 Msa0257580:intron 35.0%
! ATGTTGTCAAGGTTAGTCAT+GGG - chr2_2:53540965-53540984 Msa0257580:intron 35.0%
CAGATATTGAATGACACAAC+AGG - chr2_2:53541257-53541276 Msa0257580:intron 35.0%
AGGAAATCTAGATGCCAAAA+AGG - chr2_2:53541277-53541296 Msa0257580:intron 35.0%
GAGAATACGAAGATTGTACA+AGG + chr2_2:53541370-53541389 None:intergenic 35.0%
CGAAATACAGATCTATGTGA+CGG + chr2_2:53541527-53541546 None:intergenic 35.0%
TTTCTCAGTAGTTAGCCATA+TGG - chr2_2:53541700-53541719 Msa0257580:intron 35.0%
! GAATTTAATGGGTGGAAACT+TGG + chr2_2:53541955-53541974 None:intergenic 35.0%
! TTTTTACCTGCTCTTTTGGA+TGG + chr2_2:53542029-53542048 None:intergenic 35.0%
ATCCATTTCATGTCATTGAG+TGG - chr2_2:53542126-53542145 Msa0257580:five_prime_UTR 35.0%
AAAGAATCAGCTGAAACTCC+TGG + chr2_2:53536816-53536835 None:intergenic 40.0%
ATCATTACTGCAATCTGGTC+TGG + chr2_2:53536847-53536866 None:intergenic 40.0%
GGAACATCATTACTGCAATC+TGG + chr2_2:53536852-53536871 None:intergenic 40.0%
GGATTGATGGAAATTGGTGT+TGG - chr2_2:53536994-53537013 Msa0257580:intron 40.0%
CCTAAAAGGCTTTCAATCAG+AGG + chr2_2:53537069-53537088 None:intergenic 40.0%
! CCTCTGATTGAAAGCCTTTT+AGG - chr2_2:53537066-53537085 Msa0257580:intron 40.0%
ATCAACACTGCACACCTAAA+AGG + chr2_2:53537083-53537102 None:intergenic 40.0%
! TCCATCATGGTGTTTTATGG+TGG - chr2_2:53537412-53537431 Msa0257580:intron 40.0%
TCCACCATAAAACACCATGA+TGG + chr2_2:53537416-53537435 None:intergenic 40.0%
ACACACAATGTTATCAACGG+AGG + chr2_2:53537457-53537476 None:intergenic 40.0%
!! CAAGAAGGGTATCTGGATAT+AGG - chr2_2:53537936-53537955 Msa0257580:CDS 40.0%
CAAACTTCTCCCCTAATTGA+TGG + chr2_2:53538225-53538244 None:intergenic 40.0%
CATCAATTAGGGGAGAAGTT+TGG - chr2_2:53538223-53538242 Msa0257580:intron 40.0%
ATCAAATAAGAGAACGCCGA+AGG - chr2_2:53538295-53538314 Msa0257580:intron 40.0%
AAATGGAAGCTGACTACCTT+CGG + chr2_2:53538314-53538333 None:intergenic 40.0%
CATAGTTCAACCACTCAAAC+CGG - chr2_2:53538394-53538413 Msa0257580:intron 40.0%
GTTTGACTGTTGTTCTGTTC+CGG + chr2_2:53538416-53538435 None:intergenic 40.0%
AACCGAATAGTTGACAGCAT+CGG - chr2_2:53538445-53538464 Msa0257580:intron 40.0%
AACCGATGCTGTCAACTATT+CGG + chr2_2:53538450-53538469 None:intergenic 40.0%
ACTGGTTGAACTGTATGGTT+CGG - chr2_2:53538479-53538498 Msa0257580:intron 40.0%
TCAGGATGCAATATGCTACA+TGG - chr2_2:53538568-53538587 Msa0257580:intron 40.0%
TTGTTTCCTCTTGTTGGAAG+TGG - chr2_2:53538609-53538628 Msa0257580:intron 40.0%
TGGCCATCATCAGTAATTAC+AGG + chr2_2:53538651-53538670 None:intergenic 40.0%
CCAGAAAGAAATCCAGACAA+GGG - chr2_2:53538696-53538715 Msa0257580:intron 40.0%
CAGACAAGAAACTAATCCAG+TGG - chr2_2:53538790-53538809 Msa0257580:CDS 40.0%
AAAGAAGTTGGATACGGTCA+AGG - chr2_2:53539042-53539061 Msa0257580:intron 40.0%
GAGACATTGCAAATGGTGTT+TGG + chr2_2:53539338-53539357 None:intergenic 40.0%
! GAATTATCATTGGGGAGCAT+AGG + chr2_2:53539408-53539427 None:intergenic 40.0%
! ATGATGAAGCAGACGCATTT+TGG - chr2_2:53539434-53539453 Msa0257580:intron 40.0%
!! GTTCTTGAACTTTTCAAGCG+AGG - chr2_2:53539599-53539618 Msa0257580:intron 40.0%
CGAGGAAATTTCAGATGTAC+TGG - chr2_2:53539617-53539636 Msa0257580:intron 40.0%
GGAGGCTCAACTAAGTAATT+TGG - chr2_2:53539655-53539674 Msa0257580:intron 40.0%
TGGAGAACAGAACATATTGG+TGG - chr2_2:53539952-53539971 Msa0257580:CDS 40.0%
AGAACAGAACATATTGGTGG+AGG - chr2_2:53539955-53539974 Msa0257580:CDS 40.0%
TGATTCATTGTACCTATGGG+AGG - chr2_2:53540038-53540057 Msa0257580:CDS 40.0%
GATAGTGTTAGAACACCAAC+CGG - chr2_2:53540192-53540211 Msa0257580:intron 40.0%
! TCTCTTTCATTTTCCGCTAC+CGG + chr2_2:53540214-53540233 None:intergenic 40.0%
GATCGTTTGCTTACACAGTT+CGG - chr2_2:53540259-53540278 Msa0257580:intron 40.0%
TAGACACATAAGAGAGGCAA+GGG + chr2_2:53540506-53540525 None:intergenic 40.0%
ATAGACACATAAGAGAGGCA+AGG + chr2_2:53540507-53540526 None:intergenic 40.0%
ATCAGCTTCTGTAAAAGCTG+AGG - chr2_2:53540771-53540790 Msa0257580:intron 40.0%
TCAGCTTCTGTAAAAGCTGA+GGG - chr2_2:53540772-53540791 Msa0257580:intron 40.0%
GCAAAGTCAATACGACAATG+TGG - chr2_2:53540808-53540827 Msa0257580:CDS 40.0%
! GATGTTGTCAAGGTTAGTCA+TGG - chr2_2:53540964-53540983 Msa0257580:intron 40.0%
AATAACACGCAAGATGTCAG+AGG + chr2_2:53541232-53541251 None:intergenic 40.0%
CAGATCTATGTGACGGTAAA+TGG + chr2_2:53541520-53541539 None:intergenic 40.0%
!! CAATGGATATGTTTGGTGCT+AGG + chr2_2:53541801-53541820 None:intergenic 40.0%
GTTCCCTCAGGGAATTTAAT+GGG + chr2_2:53541966-53541985 None:intergenic 40.0%
AGTTCCCTCAGGGAATTTAA+TGG + chr2_2:53541967-53541986 None:intergenic 40.0%
AACATACAACAGTTCCCTCA+GGG + chr2_2:53541977-53541996 None:intergenic 40.0%
TAACATACAACAGTTCCCTC+AGG + chr2_2:53541978-53541997 None:intergenic 40.0%
GACCACTCAATGACATGAAA+TGG + chr2_2:53542131-53542150 None:intergenic 40.0%
TGATGTGTATGTGTCGTGTC+CGG - chr2_2:53537099-53537118 Msa0257580:intron 45.0%
ACGGACACAAACATGAACAC+CGG + chr2_2:53537121-53537140 None:intergenic 45.0%
!! GTGATGACAAGTATTGGCCA+TGG - chr2_2:53537342-53537361 Msa0257580:intron 45.0%
!! ATGACAAGTATTGGCCATGG+AGG - chr2_2:53537345-53537364 Msa0257580:intron 45.0%
TCTCCATGGCCAATTTGTGA+AGG - chr2_2:53537380-53537399 Msa0257580:intron 45.0%
CATCCTTCACAAATTGGCCA+TGG + chr2_2:53537386-53537405 None:intergenic 45.0%
CATGGCCAATTTGTGAAGGA+TGG - chr2_2:53537384-53537403 Msa0257580:intron 45.0%
TACCGCCATCCTTCACAAAT+TGG + chr2_2:53537392-53537411 None:intergenic 45.0%
ATGTTATCAACGGAGGATCG+CGG + chr2_2:53537450-53537469 None:intergenic 45.0%
!! TTGGCGATGCTACTTTGTTG+AGG - chr2_2:53537521-53537540 Msa0257580:intron 45.0%
!! TGGCGATGCTACTTTGTTGA+GGG - chr2_2:53537522-53537541 Msa0257580:intron 45.0%
TGTTATTACATGGCTCAGGC+TGG - chr2_2:53537873-53537892 Msa0257580:CDS 45.0%
!! ACTTTGAGACGAATCTACCG+AGG - chr2_2:53537963-53537982 Msa0257580:CDS 45.0%
!! CTTTGAGACGAATCTACCGA+GGG - chr2_2:53537964-53537983 Msa0257580:CDS 45.0%
! TTTGAGACGAATCTACCGAG+GGG - chr2_2:53537965-53537984 Msa0257580:CDS 45.0%
! GACAGGTTTTCCATCAAGCT+AGG + chr2_2:53538048-53538067 None:intergenic 45.0%
! TAATTGATGGATGGACTCCC+TGG + chr2_2:53538212-53538231 None:intergenic 45.0%
AGGGAGTCCATCCATCAATT+AGG - chr2_2:53538211-53538230 Msa0257580:intron 45.0%
GGGAGTCCATCCATCAATTA+GGG - chr2_2:53538212-53538231 Msa0257580:intron 45.0%
GGAGTCCATCCATCAATTAG+GGG - chr2_2:53538213-53538232 Msa0257580:intron 45.0%
CTTCTCCCCTAATTGATGGA+TGG + chr2_2:53538221-53538240 None:intergenic 45.0%
! GGTCTTGTCAGTTCAATGTC+CGG + chr2_2:53538367-53538386 None:intergenic 45.0%
CATTGAACTGACAAGACCTG+TGG - chr2_2:53538369-53538388 Msa0257580:intron 45.0%
! TTGTTCTGTTCCGGTTTGAG+TGG + chr2_2:53538407-53538426 None:intergenic 45.0%
!! TAGTTGACAGCATCGGTTCA+CGG - chr2_2:53538452-53538471 Msa0257580:intron 45.0%
CGCCAATTGTTTCCTCTTGT+TGG - chr2_2:53538603-53538622 Msa0257580:intron 45.0%
AATCGACCACTTCCAACAAG+AGG + chr2_2:53538618-53538637 None:intergenic 45.0%
TCATGGGGTCTTGAATTGGT+TGG + chr2_2:53538671-53538690 None:intergenic 45.0%
GCCAGAAAGAAATCCAGACA+AGG - chr2_2:53538695-53538714 Msa0257580:intron 45.0%
CCCTTGTCTGGATTTCTTTC+TGG + chr2_2:53538699-53538718 None:intergenic 45.0%
AGTACAGCTAATCCCTTGTC+TGG + chr2_2:53538711-53538730 None:intergenic 45.0%
GATGGAGAGTTAACATCCAC+TGG + chr2_2:53538809-53538828 None:intergenic 45.0%
! ATACGTTTCAGGTCTTGACG+TGG - chr2_2:53538930-53538949 Msa0257580:intron 45.0%
AAGTTGGATACGGTCAAGGT+GGG - chr2_2:53539046-53539065 Msa0257580:intron 45.0%
! TTTCATTTTCCGCTACCGGT+TGG + chr2_2:53540210-53540229 None:intergenic 45.0%
! GTCGTAGAGGTATGCACAAT+CGG + chr2_2:53540285-53540304 None:intergenic 45.0%
TAGCTGCTCTATAGTCGTAG+AGG + chr2_2:53540298-53540317 None:intergenic 45.0%
AGACACATAAGAGAGGCAAG+GGG + chr2_2:53540505-53540524 None:intergenic 45.0%
CTTTCAACACACCAGCAACA+AGG + chr2_2:53540903-53540922 None:intergenic 45.0%
AAATTACTCCATGAAGCGCG+AGG - chr2_2:53540934-53540953 Msa0257580:intron 45.0%
AGGCTTGGATGATGTTGTCA+AGG - chr2_2:53540954-53540973 Msa0257580:intron 45.0%
! TTGTCAAGGTTAGTCATGGG+AGG - chr2_2:53540968-53540987 Msa0257580:intron 45.0%
!! TGTTTGGTGCTAGGCTTTCT+TGG + chr2_2:53541792-53541811 None:intergenic 45.0%
TCCACCCATTAAATTCCCTG+AGG - chr2_2:53541959-53541978 Msa0257580:exon 45.0%
CCACCCATTAAATTCCCTGA+GGG - chr2_2:53541960-53541979 Msa0257580:exon 45.0%
GTGTATCCATCCAAAAGAGC+AGG - chr2_2:53542020-53542039 Msa0257580:five_prime_UTR 45.0%
!!! TTTTTTATTTTTCTTAATTT+TGG - chr2_2:53537800-53537819 Msa0257580:intron 5.0%
CTTGTGATGTGGAGAGATCC+AGG - chr2_2:53536795-53536814 Msa0257580:three_prime_UTR 50.0%
GGCCAATTTGTGAAGGATGG+CGG - chr2_2:53537387-53537406 Msa0257580:intron 50.0%
! AAGGATGGCGGTATCCATCA+TGG - chr2_2:53537399-53537418 Msa0257580:intron 50.0%
GTGGTTGAACTATGAGCCAC+AGG + chr2_2:53538388-53538407 None:intergenic 50.0%
!! GCATCGGTTCACGGTTTAAC+TGG - chr2_2:53538461-53538480 Msa0257580:intron 50.0%
! TTGACGTGGTTCGCACTGAT+AGG - chr2_2:53538944-53538963 Msa0257580:intron 50.0%
! GGTTCGCACTGATAGGACAT+TGG - chr2_2:53538951-53538970 Msa0257580:intron 50.0%
GAAGTTGGATACGGTCAAGG+TGG - chr2_2:53539045-53539064 Msa0257580:intron 50.0%
! AGATGTACTGGTCGCACTCT+TGG - chr2_2:53539629-53539648 Msa0257580:intron 50.0%
! GATGTACTGGTCGCACTCTT+GGG - chr2_2:53539630-53539649 Msa0257580:intron 50.0%
! ATGTACTGGTCGCACTCTTG+GGG - chr2_2:53539631-53539650 Msa0257580:intron 50.0%
GTTAGAACACCAACCGGTAG+CGG - chr2_2:53540198-53540217 Msa0257580:intron 50.0%
TCTTAGGCCCGACTGTTTGT+CGG + chr2_2:53540443-53540462 None:intergenic 50.0%
!! GTAAAAGCTGAGGGCGTCAA+AGG - chr2_2:53540781-53540800 Msa0257580:intron 50.0%
CACGCAAGATGTCAGAGGAA+CGG + chr2_2:53541227-53541246 None:intergenic 50.0%
TGCCAAAAAGGCTTGCGTTG+AGG - chr2_2:53541289-53541308 Msa0257580:intron 50.0%
! AGCCTCAACGCAAGCCTTTT+TGG + chr2_2:53541294-53541313 None:intergenic 50.0%
CCCTCAGGGAATTTAATGGG+TGG + chr2_2:53541963-53541982 None:intergenic 50.0%
! GTACCTATGGGAGGTGTGTC+TGG - chr2_2:53540047-53540066 Msa0257580:CDS 55.0%
AAGCCAGACACACCTCCCAT+AGG + chr2_2:53540053-53540072 None:intergenic 55.0%
AATACCCCTGAACCGTACCG+CGG - chr2_2:53540400-53540419 Msa0257580:intron 55.0%
TTAGGCCCGACTGTTTGTCG+GGG + chr2_2:53540441-53540460 None:intergenic 55.0%
CTTAGGCCCGACTGTTTGTC+GGG + chr2_2:53540442-53540461 None:intergenic 55.0%
TGAGCTAGCAAAGCTCCCTC+CGG + chr2_2:53540474-53540493 None:intergenic 55.0%
ACATAAGAGAGGCAAGGGGC+GGG + chr2_2:53540501-53540520 None:intergenic 55.0%
CACATAAGAGAGGCAAGGGG+CGG + chr2_2:53540502-53540521 None:intergenic 55.0%
TACTGGTCGCACTCTTGGGG+TGG - chr2_2:53539634-53539653 Msa0257580:intron 60.0%
ATACCCCTGAACCGTACCGC+GGG - chr2_2:53540401-53540420 Msa0257580:intron 60.0%
TAGGCCCGACTGTTTGTCGG+GGG + chr2_2:53540440-53540459 None:intergenic 60.0%
CAGTCGGGCCTAAGACACCA+AGG - chr2_2:53540448-53540467 Msa0257580:intron 60.0%
CCTAAGACACCAAGGCCGGA+GGG - chr2_2:53540456-53540475 Msa0257580:intron 60.0%
CATAAGAGAGGCAAGGGGCG+GGG + chr2_2:53540500-53540519 None:intergenic 60.0%
ACTCCATGAAGCGCGAGGCT+TGG - chr2_2:53540939-53540958 Msa0257580:intron 60.0%
CATCCAAGCCTCGCGCTTCA+TGG + chr2_2:53540945-53540964 None:intergenic 60.0%
TGGTCGCACTCTTGGGGTGG+AGG - chr2_2:53539637-53539656 Msa0257580:intron 65.0%
TACCCCTGAACCGTACCGCG+GGG - chr2_2:53540402-53540421 Msa0257580:intron 65.0%
ATCCCCCGCGGTACGGTTCA+GGG + chr2_2:53540408-53540427 None:intergenic 65.0%
TATCCCCCGCGGTACGGTTC+AGG + chr2_2:53540409-53540428 None:intergenic 65.0%
GACTGTTTGTCGGGGGAGGG+GGG + chr2_2:53540433-53540452 None:intergenic 65.0%
CGACTGTTTGTCGGGGGAGG+GGG + chr2_2:53540434-53540453 None:intergenic 65.0%
CCGACTGTTTGTCGGGGGAG+GGG + chr2_2:53540435-53540454 None:intergenic 65.0%
CCCCTCCCCCGACAAACAGT+CGG - chr2_2:53540432-53540451 Msa0257580:intron 65.0%
CCCGACTGTTTGTCGGGGGA+GGG + chr2_2:53540436-53540455 None:intergenic 65.0%
CCCTCCCCCGACAAACAGTC+GGG - chr2_2:53540433-53540452 Msa0257580:intron 65.0%
CGGGCCTAAGACACCAAGGC+CGG - chr2_2:53540452-53540471 Msa0257580:intron 65.0%
GCCTAAGACACCAAGGCCGG+AGG - chr2_2:53540455-53540474 Msa0257580:intron 65.0%
!! CCCTCCGGCCTTGGTGTCTT+AGG + chr2_2:53540459-53540478 None:intergenic 65.0%
AGCAAAGCTCCCTCCGGCCT+TGG + chr2_2:53540468-53540487 None:intergenic 65.0%
ACCCCTGAACCGTACCGCGG+GGG - chr2_2:53540403-53540422 Msa0257580:intron 70.0%
TCCCCCGCGGTACGGTTCAG+GGG + chr2_2:53540407-53540426 None:intergenic 70.0%
GGGGGATATCCCCCGCGGTA+CGG + chr2_2:53540415-53540434 None:intergenic 70.0%
GCCCGACTGTTTGTCGGGGG+AGG + chr2_2:53540437-53540456 None:intergenic 70.0%
GGGAGGGGGGATATCCCCCG+CGG + chr2_2:53540420-53540439 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 53536596 53542182 53536596 ID=Msa0257580;Name=Msa0257580
chr2_2 mRNA 53536596 53542182 53536596 ID=Msa0257580-mRNA-1;Parent=Msa0257580;Name=Msa0257580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=205|0.8|0.90|0.90|0.8|0.90|11|380|416
chr2_2 exon 53536596 53536990 53536596 ID=Msa0257580-mRNA-1:exon:16088;Parent=Msa0257580-mRNA-1
chr2_2 exon 53537435 53537518 53537435 ID=Msa0257580-mRNA-1:exon:16087;Parent=Msa0257580-mRNA-1
chr2_2 exon 53537803 53538063 53537803 ID=Msa0257580-mRNA-1:exon:16086;Parent=Msa0257580-mRNA-1
chr2_2 exon 53538719 53538816 53538719 ID=Msa0257580-mRNA-1:exon:16085;Parent=Msa0257580-mRNA-1
chr2_2 exon 53539056 53539161 53539056 ID=Msa0257580-mRNA-1:exon:16084;Parent=Msa0257580-mRNA-1
chr2_2 exon 53539295 53539383 53539295 ID=Msa0257580-mRNA-1:exon:16083;Parent=Msa0257580-mRNA-1
chr2_2 exon 53539715 53539837 53539715 ID=Msa0257580-mRNA-1:exon:16082;Parent=Msa0257580-mRNA-1
chr2_2 exon 53539944 53540206 53539944 ID=Msa0257580-mRNA-1:exon:16081;Parent=Msa0257580-mRNA-1
chr2_2 exon 53540617 53540639 53540617 ID=Msa0257580-mRNA-1:exon:16080;Parent=Msa0257580-mRNA-1
chr2_2 exon 53540792 53540887 53540792 ID=Msa0257580-mRNA-1:exon:16079;Parent=Msa0257580-mRNA-1
chr2_2 exon 53541885 53542182 53541885 ID=Msa0257580-mRNA-1:exon:16078;Parent=Msa0257580-mRNA-1
chr2_2 five_prime_UTR 53541978 53542182 53541978 ID=Msa0257580-mRNA-1:five_prime_utr;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53541885 53541977 53541885 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53540792 53540887 53540792 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53540617 53540639 53540617 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53539944 53540206 53539944 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53539715 53539837 53539715 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53539295 53539383 53539295 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53539056 53539161 53539056 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53538719 53538816 53538719 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53537803 53538063 53537803 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53537435 53537518 53537435 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 CDS 53536976 53536990 53536976 ID=Msa0257580-mRNA-1:cds;Parent=Msa0257580-mRNA-1
chr2_2 three_prime_UTR 53536596 53536975 53536596 ID=Msa0257580-mRNA-1:three_prime_utr;Parent=Msa0257580-mRNA-1
Gene Sequence

>Msa0257580

ATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTTCTATGAAACCAGACCAGATTGCAGTAATGATGTTCCCATCTCAAGATTCAAGATCAAGGCTGGTAAAACACTAAGTCCAAGAAAATGGCATGATGCATTTACTCAAGAAGGGTATCTGGATATAGGCAAGACTTTGAGACGAATCTACCGAGGGTGTAGAAAGACAAGAATTTTTATGATGCAATATGCTACATGGAAAGAAGAATGTCGCCAATTGTTTCCTCTTGTTGGAAGTGGTCGATTTATCACATCACCTGTAATTACTGATGATGGCCAACCAATTCAAGACCCCATGATTATGCCAGAAAGAAATCCAGACAAGGGATTAGCTGTACTTCCTCAAGATAATAATAGGCCTTCAAGTATAGATTCTGTAAATAATTTAGAAAATGTGACAGACAAGAAACTAATCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGACGTGGTTCGCACTGATAGGACATTGGTTTTTTATGAGAAACAAGAAAACTTGTCAAAATTATGGGATATTCTTGCAGTTTATGCTTGGATAGATAAAGAAGTTGGATACGGTCAAGGAATGAGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGACGCATTTTGGTGCTTTGAGCGTCTGATGCGCAGACTTCGAGGAAATTTCAGATGTACTGGTCGCACTCTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAGTTGATCCAAAACTCCATAAACATATAGAACATATTGGTGGAGGCGACTATGTATTTGCTTTTCGGATGCTTATGGTTCTGTTTCGTCGAGAATTTTCCTTTTGTGATTCATTGTACCTATGGGAGATGATGTGGGCTCTAGAGTATGATCCTTATTTGTTCTTGATGTATGAAGAAGCTCAATCAGCTTCTGTAAAAGCTGAGGGCGTCAAAGGAAAAGCAAAGTCAATACGACAATGTGGAAAATACGAGAGACAAAATATGAGAAATGGAGCAAAGAATGCTGAATCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTGGTGTGTTGAAAGATAAAAGTACAAAATTACTCCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGACACAACAGGAAATCTAGATGCCAAAAAGGCTTGCGTTGAGGCTATGAAGCTTCACAAAAAATATTTGAGAAAGGCCAAGAAAGCCTAG

Protein sequence

>Msa0257580

MWRDPGVSADSFYETRPDCSNDVPISRFKIKAGKTLSPRKWHDAFTQEGYLDIGKTLRRIYRGCRKTRIFMMQYATWKEECRQLFPLVGSGRFITSPVITDDGQPIQDPMIMPERNPDKGLAVLPQDNNRPSSIDSVNNLENVTDKKLIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKEVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTGRTLGVEAQLSNLASITQVVDPKLHKHIEHIGGGDYVFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPYLFLMYEEAQSASVKAEGVKGKAKSIRQCGKYERQNMRNGAKNAESPLPISVFLVAGVLKDKSTKLLHEARGLDDVVKILNDTTGNLDAKKACVEAMKLHKKYLRKAKKA*