Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258890 | XP_003596864.1 | 94.231 | 468 | 27 | 0 | 1 | 468 | 1 | 468 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258890 | sp|Q5HZV9|PP1R7_RAT | 31.535 | 241 | 162 | 3 | 20 | 260 | 121 | 358 | 2.25e-24 | 107 |
| Msa0258890 | sp|Q5HZV9|PP1R7_RAT | 31.098 | 164 | 103 | 2 | 1 | 154 | 190 | 353 | 1.46e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258890 | G7IHH7 | 94.231 | 468 | 27 | 0 | 1 | 468 | 1 | 468 | 0.0 | 807 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219260 | Msa0258890 | 0.957330 | 3.524423e-115 | -8.615850e-47 |
| Msa0258890 | Msa0271510 | 0.819886 | 9.175229e-53 | -8.615850e-47 |
| Msa0258890 | Msa0298320 | 0.812175 | 4.839568e-51 | -8.615850e-47 |
| Msa0258890 | Msa0881360 | 0.809857 | 1.537669e-50 | -8.615850e-47 |
| Msa0258890 | Msa1382960 | 0.809317 | 2.008659e-50 | -8.615850e-47 |
| Msa0258890 | Msa1453610 | 0.820175 | 7.881621e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258890 | MtrunA17_Chr2g0321711 | 94.231 | 468 | 27 | 0 | 1 | 468 | 1 | 468 | 0.0 | 807 |
| Msa0258890 | MtrunA17_Chr8g0390081 | 29.114 | 237 | 134 | 6 | 19 | 252 | 94 | 299 | 6.40e-13 | 69.7 |
| Msa0258890 | MtrunA17_Chr5g0426251 | 33.929 | 168 | 105 | 4 | 97 | 260 | 418 | 583 | 2.46e-11 | 65.9 |
| Msa0258890 | MtrunA17_Chr8g0370111 | 26.971 | 241 | 164 | 7 | 37 | 269 | 285 | 521 | 8.65e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258890 | AT5G22320.1 | 45.148 | 474 | 229 | 9 | 1 | 466 | 1 | 451 | 4.92e-114 | 343 |
| Msa0258890 | AT5G22320.2 | 43.249 | 474 | 222 | 10 | 1 | 466 | 1 | 435 | 2.88e-103 | 315 |
| Msa0258890 | AT5G19680.1 | 31.321 | 265 | 135 | 9 | 1 | 252 | 62 | 292 | 3.30e-14 | 73.9 |
| Msa0258890 | AT5G19680.1 | 32.857 | 140 | 83 | 2 | 37 | 171 | 193 | 326 | 1.31e-11 | 66.2 |
| Msa0258890 | AT4G35470.1 | 28.384 | 229 | 150 | 6 | 37 | 258 | 265 | 486 | 7.59e-11 | 64.7 |
| Msa0258890 | AT4G35470.2 | 28.384 | 229 | 150 | 6 | 37 | 258 | 265 | 486 | 7.83e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGCCAGCTTCAATAAAT+TGG | 0.169541 | 2_2:+55562950 | Msa0258890:CDS |
| AGAAATTCATTTGAAGTAAT+TGG | 0.187992 | 2_2:-55567126 | None:intergenic |
| CCCATTCCAATTTCTGTTAC+TGG | 0.188491 | 2_2:-55566745 | None:intergenic |
| CATTGCATTTCTCCTTGTTC+AGG | 0.189521 | 2_2:+55566866 | Msa0258890:three_prime_UTR |
| GAATTGTGCATTAGTTCTTC+TGG | 0.203595 | 2_2:-55565781 | None:intergenic |
| AGACTCCACTTTATGCATTT+TGG | 0.207816 | 2_2:-55566713 | None:intergenic |
| TGCAAAATGGTCAGATATAA+AGG | 0.253542 | 2_2:+55565840 | Msa0258890:CDS |
| TTCTTGGTATCTTTATCTAT+TGG | 0.257179 | 2_2:-55566160 | None:intergenic |
| TCATCTCCAGTAACAGAAAT+TGG | 0.264149 | 2_2:+55566739 | Msa0258890:CDS |
| TCTTGCTCACAATGATATTA+AGG | 0.282764 | 2_2:+55565599 | Msa0258890:CDS |
| AAAGCTTCGGAATTTAGATT+TGG | 0.286348 | 2_2:+55565804 | Msa0258890:CDS |
| CAAGTGACCTTTCTCATTCT+TGG | 0.296468 | 2_2:-55566176 | None:intergenic |
| AAGAAAATTTAAACTCCCTT+TGG | 0.331012 | 2_2:-55567234 | None:intergenic |
| AAGCTTCGGAATTTAGATTT+GGG | 0.337577 | 2_2:+55565805 | Msa0258890:CDS |
| ACAAAATACTCAATAAATAA+TGG | 0.340042 | 2_2:-55567101 | None:intergenic |
| CAGATGTATACCATTACATT+TGG | 0.349903 | 2_2:-55567281 | None:intergenic |
| ACAGGTCATAACAAGGATAA+TGG | 0.368572 | 2_2:+55566349 | Msa0258890:CDS |
| GTGAATTGCACATCAGATTC+TGG | 0.371790 | 2_2:+55567024 | Msa0258890:three_prime_UTR |
| ACTTTCTCATTTGTAGCAAC+AGG | 0.381222 | 2_2:-55565996 | None:intergenic |
| GGTATCTTTATCTATTGGTT+TGG | 0.382169 | 2_2:-55566155 | None:intergenic |
| TAAATTGAGATTTCTCAGTT+TGG | 0.382838 | 2_2:-55565964 | None:intergenic |
| TTCCTCACTGCACTCATTCA+AGG | 0.388703 | 2_2:-55562722 | None:intergenic |
| GGAGAATAAATTAGAAAGCT+TGG | 0.390492 | 2_2:+55563154 | Msa0258890:CDS |
| ATAGACCCCACCTTCCTTCT+CGG | 0.391386 | 2_2:-55566314 | None:intergenic |
| AGAGGAGACATAAAACTTAA+TGG | 0.396284 | 2_2:-55567156 | None:intergenic |
| ATTGCATTTCTCCTTGTTCA+GGG | 0.397484 | 2_2:+55566867 | Msa0258890:three_prime_UTR |
| GTTGATTTATTCTTCGTGTC+AGG | 0.403540 | 2_2:-55566409 | None:intergenic |
| CATCTGATCAAGTTTGCAAA+TGG | 0.405995 | 2_2:-55564798 | None:intergenic |
| CCTTTCACATTGTCAGATTG+AGG | 0.407813 | 2_2:+55565530 | Msa0258890:CDS |
| AATTGTGCATTAGTTCTTCT+GGG | 0.410918 | 2_2:-55565780 | None:intergenic |
| CCACCTGGGTTTAGCACAAA+TGG | 0.413148 | 2_2:-55566991 | None:intergenic |
| GCGTTGAATACTTGTAGCTT+TGG | 0.437925 | 2_2:-55566133 | None:intergenic |
| ATCTTGAAGCTGCTGACAAA+AGG | 0.439283 | 2_2:+55566254 | Msa0258890:CDS |
| CTCTCGAGGAGAATGTTAAT+AGG | 0.448873 | 2_2:+55566482 | Msa0258890:CDS |
| CTTTCACATTGTCAGATTGA+GGG | 0.449337 | 2_2:+55565531 | Msa0258890:CDS |
| GAAAGCTTGGAAGGAATTCA+AGG | 0.449690 | 2_2:+55563167 | Msa0258890:CDS |
| TTGGCACTCTTATGCTTGAC+AGG | 0.455417 | 2_2:-55566694 | None:intergenic |
| TACTCAATAAATAATGGAAA+AGG | 0.460616 | 2_2:-55567095 | None:intergenic |
| TGAATCGAACTCGGTACTCT+AGG | 0.462484 | 2_2:+55566937 | Msa0258890:three_prime_UTR |
| ATTTCAAATCCTTAGGCGCT+TGG | 0.462547 | 2_2:-55566648 | None:intergenic |
| TAATCTTCATCCAAATGTAA+TGG | 0.462717 | 2_2:+55567271 | Msa0258890:three_prime_UTR |
| TTTCATAGTAGTCATGCAAA+AGG | 0.463184 | 2_2:-55567186 | None:intergenic |
| GGAAGGTGGGGTCTATGATA+AGG | 0.467284 | 2_2:+55566321 | Msa0258890:CDS |
| AATAATGGAAAAGGCAAGAA+AGG | 0.468786 | 2_2:-55567086 | None:intergenic |
| TTTGAAGTGGTTATCAGTTG+TGG | 0.468829 | 2_2:+55563133 | Msa0258890:CDS |
| TGAAGACTGGAAATTGAACT+TGG | 0.471828 | 2_2:-55562799 | None:intergenic |
| TAATGCACAATTCAAAGCTT+CGG | 0.479074 | 2_2:+55565791 | Msa0258890:CDS |
| TGGCAAATGCAACAATATCT+TGG | 0.480404 | 2_2:+55567310 | Msa0258890:three_prime_UTR |
| TTCACATATTAGCCTCCACC+TGG | 0.481607 | 2_2:-55567006 | None:intergenic |
| CTCAATCTGACAATGTGAAA+GGG | 0.482918 | 2_2:-55565529 | None:intergenic |
| CTCACTAATTTCAAATCCTT+AGG | 0.490267 | 2_2:-55566655 | None:intergenic |
| TATGGTGTAAAAGGGATTGA+GGG | 0.493320 | 2_2:+55563100 | Msa0258890:intron |
| CATGCAAAAGGGGAGGGGAG+AGG | 0.494113 | 2_2:-55567174 | None:intergenic |
| TTCATAGTAGTCATGCAAAA+GGG | 0.494527 | 2_2:-55567185 | None:intergenic |
| AATGTCAGCAAATGAAGCTT+CGG | 0.495172 | 2_2:-55566569 | None:intergenic |
| GGAATAATGTGATTGCAAAA+TGG | 0.498927 | 2_2:+55565827 | Msa0258890:CDS |
| ACTGGAAATTGAACTTGGAT+TGG | 0.499943 | 2_2:-55562794 | None:intergenic |
| AATTGTTGTTACTTTCCAAA+GGG | 0.502368 | 2_2:+55567219 | Msa0258890:three_prime_UTR |
| GAGTGCCAAAATGCATAAAG+TGG | 0.507006 | 2_2:+55566708 | Msa0258890:CDS |
| GTCTATGATAAGGAAAATAC+AGG | 0.507147 | 2_2:+55566331 | Msa0258890:CDS |
| AAAGGACGACGGCAAGCCCT+CGG | 0.507847 | 2_2:+55566447 | Msa0258890:CDS |
| GTATGGTGTAAAAGGGATTG+AGG | 0.510413 | 2_2:+55563099 | Msa0258890:intron |
| GGCAAACATTACCTTTGTGA+TGG | 0.510475 | 2_2:-55565419 | None:intergenic |
| AAAGATACCAAGAATGAGAA+AGG | 0.511481 | 2_2:+55566169 | Msa0258890:CDS |
| CCAGTAACAGAAATTGGAAT+GGG | 0.514929 | 2_2:+55566745 | Msa0258890:CDS |
| GCTACAGAACCAAGCGCCTA+AGG | 0.515364 | 2_2:+55566639 | Msa0258890:CDS |
| GATCAGGAAAATCTGAATCA+TGG | 0.515970 | 2_2:+55566604 | Msa0258890:CDS |
| GGAAATTGAACTTGGATTGG+CGG | 0.520167 | 2_2:-55562791 | None:intergenic |
| ATGGTATACATCTGAACCAC+TGG | 0.522003 | 2_2:+55567290 | Msa0258890:three_prime_UTR |
| CAGTTCAACACAAAACTTGA+GGG | 0.525455 | 2_2:-55565565 | None:intergenic |
| AATAAATTAGAAAGCTTGGA+AGG | 0.526330 | 2_2:+55563158 | Msa0258890:CDS |
| CTGAGAAATCTCAATTTACA+AGG | 0.527846 | 2_2:+55565969 | Msa0258890:CDS |
| GCTGTCGTTCAATACTTGCT+CGG | 0.536067 | 2_2:-55562764 | None:intergenic |
| CAATAATCTCACTTCACTTG+AGG | 0.539721 | 2_2:+55562992 | Msa0258890:CDS |
| CCTCAATCTGACAATGTGAA+AGG | 0.540601 | 2_2:-55565530 | None:intergenic |
| ATGAAAGAATTGAATACTCT+CGG | 0.542671 | 2_2:+55564818 | Msa0258890:CDS |
| CGGAAAGAGCTTTGTGAGTG+AGG | 0.545351 | 2_2:-55562822 | None:intergenic |
| AAGAGACAAACATCACAAGT+AGG | 0.545697 | 2_2:-55567048 | None:intergenic |
| GTGAACCAGGTACTAAATGC+AGG | 0.545787 | 2_2:+55564538 | Msa0258890:intron |
| TCCAGTAACAGAAATTGGAA+TGG | 0.551066 | 2_2:+55566744 | Msa0258890:CDS |
| AAATGAGAAAGTTACAAGAA+AGG | 0.556080 | 2_2:+55566007 | Msa0258890:CDS |
| GAATCGAACTCGGTACTCTA+GGG | 0.559753 | 2_2:+55566938 | Msa0258890:three_prime_UTR |
| GTAGTCATGCAAAAGGGGAG+GGG | 0.566771 | 2_2:-55567179 | None:intergenic |
| TGAGTCAGTAAGAAAACAGT+AGG | 0.568093 | 2_2:-55566829 | None:intergenic |
| AGTAGTCATGCAAAAGGGGA+GGG | 0.568334 | 2_2:-55567180 | None:intergenic |
| AATTGGCGAGGCTCTGAAGA+AGG | 0.568851 | 2_2:+55565390 | Msa0258890:CDS |
| AGCTTCGGAATTTAGATTTG+GGG | 0.572795 | 2_2:+55565806 | Msa0258890:CDS |
| TTTGTGAGTGAGGTGAAGAC+TGG | 0.573523 | 2_2:-55562812 | None:intergenic |
| AAATTGTTGTTACTTTCCAA+AGG | 0.579314 | 2_2:+55567218 | Msa0258890:three_prime_UTR |
| AACTGTTGATGTATCCGAGA+AGG | 0.580615 | 2_2:+55566300 | Msa0258890:CDS |
| GATGTATCCGAGAAGGAAGG+TGG | 0.583676 | 2_2:+55566307 | Msa0258890:CDS |
| AGAGACAAACATCACAAGTA+GGG | 0.589548 | 2_2:-55567047 | None:intergenic |
| AACTGTGCTCACCCTGAACA+AGG | 0.591893 | 2_2:-55566878 | None:intergenic |
| GATATTGTTGCATTTGCCAG+TGG | 0.603591 | 2_2:-55567306 | None:intergenic |
| AGATCATGTCGATCAAAATG+AGG | 0.604619 | 2_2:+55566225 | Msa0258890:CDS |
| CACCATTCAAAATCAGTGCA+CGG | 0.606464 | 2_2:-55564609 | None:intergenic |
| TTTGTGCTAAACCCAGGTGG+AGG | 0.613343 | 2_2:+55566994 | Msa0258890:three_prime_UTR |
| TCATAGTAGTCATGCAAAAG+GGG | 0.614238 | 2_2:-55567184 | None:intergenic |
| GGGCATGTGTTAATTTGAAG+TGG | 0.617171 | 2_2:+55563120 | Msa0258890:CDS |
| GAATGGGAGGTTCATCAACA+TGG | 0.618002 | 2_2:+55566761 | Msa0258890:CDS |
| AAAGAAGAATCGAAAGAACA+AGG | 0.618334 | 2_2:+55566516 | Msa0258890:CDS |
| ATGTATCCGAGAAGGAAGGT+GGG | 0.618544 | 2_2:+55566308 | Msa0258890:CDS |
| TAGTAGTCATGCAAAAGGGG+AGG | 0.622420 | 2_2:-55567181 | None:intergenic |
| TCCTATCCGTAAAATTGGCG+AGG | 0.623359 | 2_2:+55565378 | Msa0258890:CDS |
| TGATCAGTATGAATCGAACT+CGG | 0.625560 | 2_2:+55566928 | Msa0258890:three_prime_UTR |
| GGAAAATACAGGTCATAACA+AGG | 0.632189 | 2_2:+55566342 | Msa0258890:CDS |
| TCAGTTCAACACAAAACTTG+AGG | 0.639929 | 2_2:-55565566 | None:intergenic |
| GTTGATGTATCCGAGAAGGA+AGG | 0.641292 | 2_2:+55566304 | Msa0258890:CDS |
| GTAACAGAAATTGGAATGGG+AGG | 0.647412 | 2_2:+55566748 | Msa0258890:CDS |
| TCACATATTAGCCTCCACCT+GGG | 0.660002 | 2_2:-55567005 | None:intergenic |
| TGTATCCGAGAAGGAAGGTG+GGG | 0.665884 | 2_2:+55566309 | Msa0258890:CDS |
| ATTCAAAATCAGTGCACGGA+GGG | 0.667546 | 2_2:-55564605 | None:intergenic |
| AAACCATTTGTGCTAAACCC+AGG | 0.672861 | 2_2:+55566988 | Msa0258890:three_prime_UTR |
| GAAGGTGAAATCCATCACAA+AGG | 0.679265 | 2_2:+55565408 | Msa0258890:CDS |
| CCATTTGTGCTAAACCCAGG+TGG | 0.709050 | 2_2:+55566991 | Msa0258890:three_prime_UTR |
| CAGGAAAATCTGAATCATGG+TGG | 0.716042 | 2_2:+55566607 | Msa0258890:CDS |
| CATTCAAAATCAGTGCACGG+AGG | 0.728165 | 2_2:-55564606 | None:intergenic |
| TGCCTTGAATGAGTGCAGTG+AGG | 0.768971 | 2_2:+55562720 | Msa0258890:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGTTAAGATTTTTTA+GGG | - | chr2_2:55562901-55562920 | None:intergenic | 10.0% |
| !!! | AAAAAAAGTTAAGATTTTTT+AGG | - | chr2_2:55562902-55562921 | None:intergenic | 10.0% |
| !! | AAAAAATAAACTTAAATCTA+TGG | + | chr2_2:55564561-55564580 | Msa0258890:CDS | 10.0% |
| !! | TTGAAAGTTATGAAAAAAAT+TGG | + | chr2_2:55563043-55563062 | Msa0258890:intron | 15.0% |
| !!! | TTGATTGTATTTTATATGTA+TGG | + | chr2_2:55563082-55563101 | Msa0258890:intron | 15.0% |
| !!! | TATTTCTATTTCTATTTCTA+TGG | + | chr2_2:55563553-55563572 | Msa0258890:intron | 15.0% |
| !!! | ATTTCTATTTCTATTTCTAT+GGG | + | chr2_2:55563554-55563573 | Msa0258890:intron | 15.0% |
| !!! | GTTTAAAAATTATTTTACGT+TGG | - | chr2_2:55563598-55563617 | None:intergenic | 15.0% |
| !! | ACAATAAAAATAGAGTTTAA+TGG | - | chr2_2:55563750-55563769 | None:intergenic | 15.0% |
| !!! | AAACTCTATTTTTATTGTTA+TGG | + | chr2_2:55563752-55563771 | Msa0258890:intron | 15.0% |
| !! | ACAAAATACTCAATAAATAA+TGG | - | chr2_2:55567104-55567123 | None:intergenic | 15.0% |
| !!! | AAATATCTTTTGATTATACA+TGG | - | chr2_2:55567339-55567358 | None:intergenic | 15.0% |
| !!! | TTTTTAGGGTTTTAACAAAA+GGG | - | chr2_2:55562887-55562906 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGGTTTTAACAAA+AGG | - | chr2_2:55562888-55562907 | None:intergenic | 20.0% |
| !! | TATGAAAAAAATTGGAACTT+TGG | + | chr2_2:55563051-55563070 | Msa0258890:intron | 20.0% |
| !!! | TTTTATATGTATGGTGTAAA+AGG | + | chr2_2:55563091-55563110 | Msa0258890:intron | 20.0% |
| !! | TTTATATGTATGGTGTAAAA+GGG | + | chr2_2:55563092-55563111 | Msa0258890:intron | 20.0% |
| !!! | TAAAAATTATTTTACGTTGG+CGG | - | chr2_2:55563595-55563614 | None:intergenic | 20.0% |
| !! | ATGTTTAATAAAGCGTATTA+TGG | + | chr2_2:55564278-55564297 | Msa0258890:intron | 20.0% |
| !! | AGTATATTATTCTGAACATA+TGG | - | chr2_2:55564422-55564441 | None:intergenic | 20.0% |
| !! | TTGTAACAAAGTATAAACAT+AGG | - | chr2_2:55564470-55564489 | None:intergenic | 20.0% |
| !!! | TTTGAAATGCAAACTATTTT+TGG | + | chr2_2:55565279-55565298 | Msa0258890:intron | 20.0% |
| !! | TATTCAAAAATTATTTGAGC+TGG | - | chr2_2:55565329-55565348 | None:intergenic | 20.0% |
| !!! | TACTCAATAAATAATGGAAA+AGG | - | chr2_2:55567098-55567117 | None:intergenic | 20.0% |
| !!! | AGAAATTCATTTGAAGTAAT+TGG | - | chr2_2:55567129-55567148 | None:intergenic | 20.0% |
| !!! | TTTTAGGGTTTTAACAAAAG+GGG | - | chr2_2:55562886-55562905 | None:intergenic | 25.0% |
| ! | AATAAATTAGAAAGCTTGGA+AGG | + | chr2_2:55563158-55563177 | Msa0258890:CDS | 25.0% |
| ! | TTTATATTAACAAAGCAGCT+AGG | - | chr2_2:55563216-55563235 | None:intergenic | 25.0% |
| ! | CTACACATACATATAGAATA+AGG | - | chr2_2:55563276-55563295 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | - | chr2_2:55563474-55563493 | None:intergenic | 25.0% |
| ! | AATAGAAATATAGCACGTTT+AGG | - | chr2_2:55563543-55563562 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTATGGGAAAAT+AGG | + | chr2_2:55563562-55563581 | Msa0258890:intron | 25.0% |
| !! | AAATTATTTGGTGGAATACA+CGG | - | chr2_2:55563637-55563656 | None:intergenic | 25.0% |
| ! | GAGAAATAGTTAATTCCAAT+TGG | + | chr2_2:55563686-55563705 | Msa0258890:intron | 25.0% |
| !! | TATGATTGATTGTGATTTGT+TGG | + | chr2_2:55563893-55563912 | Msa0258890:intron | 25.0% |
| ! | TTGAGATTAAAGCTCATTAA+TGG | - | chr2_2:55564019-55564038 | None:intergenic | 25.0% |
| !! | TAATGAGCTTTAATCTCAAA+TGG | + | chr2_2:55564020-55564039 | Msa0258890:intron | 25.0% |
| ! | ATGGCTTATAGAAATTATCT+TGG | + | chr2_2:55564039-55564058 | Msa0258890:intron | 25.0% |
| ! | TAATAAAGCGTATTATGGTT+AGG | + | chr2_2:55564283-55564302 | Msa0258890:intron | 25.0% |
| ! | AATAAAGCGTATTATGGTTA+GGG | + | chr2_2:55564284-55564303 | Msa0258890:intron | 25.0% |
| ! | TTCAACTTTCAAAATAGATG+AGG | - | chr2_2:55564661-55564680 | None:intergenic | 25.0% |
| ! | ATGAAAGAATTGAATACTCT+CGG | + | chr2_2:55564818-55564837 | Msa0258890:CDS | 25.0% |
| ! | ATTCAAACTGTCTTGATATA+AGG | + | chr2_2:55565146-55565165 | Msa0258890:intron | 25.0% |
| ! | AAAAATCCTATCCGTAAAAT+TGG | + | chr2_2:55565373-55565392 | Msa0258890:CDS | 25.0% |
| ! | AAATAACTAATGAGCACTAA+AGG | - | chr2_2:55565461-55565480 | None:intergenic | 25.0% |
| !!! | TTTTTGATTCTACATGCTTT+TGG | + | chr2_2:55565646-55565665 | Msa0258890:intron | 25.0% |
| ! | TAAATTGAGATTTCTCAGTT+TGG | - | chr2_2:55565967-55565986 | None:intergenic | 25.0% |
| ! | AAATGAGAAAGTTACAAGAA+AGG | + | chr2_2:55566007-55566026 | Msa0258890:CDS | 25.0% |
| !! | TTTTGAACCAAAAAAAGCAA+GGG | - | chr2_2:55566037-55566056 | None:intergenic | 25.0% |
| !! | ATTTTGAACCAAAAAAAGCA+AGG | - | chr2_2:55566038-55566057 | None:intergenic | 25.0% |
| ! | TTCTTGGTATCTTTATCTAT+TGG | - | chr2_2:55566163-55566182 | None:intergenic | 25.0% |
| !!! | AGTTTCCTTTCTTTTTTTAC+TGG | - | chr2_2:55566284-55566303 | None:intergenic | 25.0% |
| !!! | AAATTGTTGTTACTTTCCAA+AGG | + | chr2_2:55567218-55567237 | Msa0258890:three_prime_UTR | 25.0% |
| !!! | AATTGTTGTTACTTTCCAAA+GGG | + | chr2_2:55567219-55567238 | Msa0258890:three_prime_UTR | 25.0% |
| ! | AAGAAAATTTAAACTCCCTT+TGG | - | chr2_2:55567237-55567256 | None:intergenic | 25.0% |
| ! | TAATCTTCATCCAAATGTAA+TGG | + | chr2_2:55567271-55567290 | Msa0258890:three_prime_UTR | 25.0% |
| TTAATCTTTGTTCATTTCCC+AGG | + | chr2_2:55562920-55562939 | Msa0258890:intron | 30.0% | |
| ! | CTTTTCCAATTTATTGAAGC+TGG | - | chr2_2:55562958-55562977 | None:intergenic | 30.0% |
| GGAGAATAAATTAGAAAGCT+TGG | + | chr2_2:55563154-55563173 | Msa0258890:CDS | 30.0% | |
| ATATGTATGTGTAGCTTAGA+AGG | + | chr2_2:55563282-55563301 | Msa0258890:intron | 30.0% | |
| ! | TGATAGCTTTTCTTGTGTTA+AGG | + | chr2_2:55563320-55563339 | Msa0258890:intron | 30.0% |
| ! | GATAGCTTTTCTTGTGTTAA+GGG | + | chr2_2:55563321-55563340 | Msa0258890:intron | 30.0% |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr2_2:55563347-55563366 | None:intergenic | 30.0% | |
| AAAACATAACGCAATCCAAA+CGG | + | chr2_2:55563515-55563534 | Msa0258890:intron | 30.0% | |
| GGATATAGCAAATTATTTGG+TGG | - | chr2_2:55563646-55563665 | None:intergenic | 30.0% | |
| GTGGGATATAGCAAATTATT+TGG | - | chr2_2:55563649-55563668 | None:intergenic | 30.0% | |
| AAACCAAAGTTGTATGAAGA+AGG | + | chr2_2:55563950-55563969 | Msa0258890:intron | 30.0% | |
| ! | CAAGTGGAATTGTTTAGTTT+CGG | + | chr2_2:55564074-55564093 | Msa0258890:intron | 30.0% |
| AGTACACAAAAATACTTCAC+TGG | - | chr2_2:55564121-55564140 | None:intergenic | 30.0% | |
| !! | GTGAAGTATTTTTGTGTACT+TGG | + | chr2_2:55564121-55564140 | Msa0258890:intron | 30.0% |
| AAACTATAAACTTGAGCACA+TGG | - | chr2_2:55564205-55564224 | None:intergenic | 30.0% | |
| TTATTCTGAACATATGGATG+TGG | - | chr2_2:55564416-55564435 | None:intergenic | 30.0% | |
| ! | AAACAAGAGATTTTGTAAGC+TGG | + | chr2_2:55565057-55565076 | Msa0258890:intron | 30.0% |
| TTGCATTTCAAACATACAAC+AGG | - | chr2_2:55565271-55565290 | None:intergenic | 30.0% | |
| ACCATCAGCAAGATATTATT+TGG | - | chr2_2:55565305-55565324 | None:intergenic | 30.0% | |
| ATTACTCATAATTCCTCTTC+TGG | + | chr2_2:55565496-55565515 | Msa0258890:intron | 30.0% | |
| TCTTGCTCACAATGATATTA+AGG | + | chr2_2:55565599-55565618 | Msa0258890:CDS | 30.0% | |
| AAAGCAAAGTCACGAATTTA+AGG | - | chr2_2:55565629-55565648 | None:intergenic | 30.0% | |
| !!! | TGCTTTTGGAATGTTTAATG+TGG | + | chr2_2:55565660-55565679 | Msa0258890:intron | 30.0% |
| ! | TACACTATTGTGCTAACTTT+TGG | + | chr2_2:55565745-55565764 | Msa0258890:intron | 30.0% |
| ! | AATTGTGCATTAGTTCTTCT+GGG | - | chr2_2:55565783-55565802 | None:intergenic | 30.0% |
| TAATGCACAATTCAAAGCTT+CGG | + | chr2_2:55565791-55565810 | Msa0258890:CDS | 30.0% | |
| AAAGCTTCGGAATTTAGATT+TGG | + | chr2_2:55565804-55565823 | Msa0258890:CDS | 30.0% | |
| AAGCTTCGGAATTTAGATTT+GGG | + | chr2_2:55565805-55565824 | Msa0258890:CDS | 30.0% | |
| GGAATAATGTGATTGCAAAA+TGG | + | chr2_2:55565827-55565846 | Msa0258890:CDS | 30.0% | |
| TGCAAAATGGTCAGATATAA+AGG | + | chr2_2:55565840-55565859 | Msa0258890:CDS | 30.0% | |
| AGATATAAAGGTTTGTCATC+TGG | + | chr2_2:55565852-55565871 | Msa0258890:intron | 30.0% | |
| CTGAGAAATCTCAATTTACA+AGG | + | chr2_2:55565969-55565988 | Msa0258890:CDS | 30.0% | |
| ATCATACACATGGTAGTTTA+AGG | - | chr2_2:55566091-55566110 | None:intergenic | 30.0% | |
| AATCTGTAACATCATACACA+TGG | - | chr2_2:55566101-55566120 | None:intergenic | 30.0% | |
| ! | GGTATCTTTATCTATTGGTT+TGG | - | chr2_2:55566158-55566177 | None:intergenic | 30.0% |
| AAAGATACCAAGAATGAGAA+AGG | + | chr2_2:55566169-55566188 | Msa0258890:CDS | 30.0% | |
| TGAAAAATCATGAGCATCAT+CGG | - | chr2_2:55566203-55566222 | None:intergenic | 30.0% | |
| GAAGTCCAGTAAAAAAAGAA+AGG | + | chr2_2:55566276-55566295 | Msa0258890:CDS | 30.0% | |
| GTCTATGATAAGGAAAATAC+AGG | + | chr2_2:55566331-55566350 | Msa0258890:CDS | 30.0% | |
| AAAAAGAAAGACAAACTCAC+AGG | + | chr2_2:55566376-55566395 | Msa0258890:CDS | 30.0% | |
| AACGAAGAACAAGCTAAAAA+AGG | + | chr2_2:55566429-55566448 | Msa0258890:CDS | 30.0% | |
| AAAGAAGAATCGAAAGAACA+AGG | + | chr2_2:55566516-55566535 | Msa0258890:CDS | 30.0% | |
| ! | TGCTGACATTTTTAACATCA+AGG | + | chr2_2:55566582-55566601 | Msa0258890:CDS | 30.0% |
| ! | CATTTTTAACATCAAGGATC+AGG | + | chr2_2:55566588-55566607 | Msa0258890:CDS | 30.0% |
| CTCACTAATTTCAAATCCTT+AGG | - | chr2_2:55566658-55566677 | None:intergenic | 30.0% | |
| ! | AATAATGGAAAAGGCAAGAA+AGG | - | chr2_2:55567089-55567108 | None:intergenic | 30.0% |
| AGAGGAGACATAAAACTTAA+TGG | - | chr2_2:55567159-55567178 | None:intergenic | 30.0% | |
| TTCATAGTAGTCATGCAAAA+GGG | - | chr2_2:55567188-55567207 | None:intergenic | 30.0% | |
| TTTCATAGTAGTCATGCAAA+AGG | - | chr2_2:55567189-55567208 | None:intergenic | 30.0% | |
| CAGATGTATACCATTACATT+TGG | - | chr2_2:55567284-55567303 | None:intergenic | 30.0% | |
| ACTGGAAATTGAACTTGGAT+TGG | - | chr2_2:55562797-55562816 | None:intergenic | 35.0% | |
| TGAAGACTGGAAATTGAACT+TGG | - | chr2_2:55562802-55562821 | None:intergenic | 35.0% | |
| GGTTTAGAGAAAAGAAAAGG+GGG | - | chr2_2:55562865-55562884 | None:intergenic | 35.0% | |
| GGGTTTAGAGAAAAGAAAAG+GGG | - | chr2_2:55562866-55562885 | None:intergenic | 35.0% | |
| GGGGTTTAGAGAAAAGAAAA+GGG | - | chr2_2:55562867-55562886 | None:intergenic | 35.0% | |
| AGGGGTTTAGAGAAAAGAAA+AGG | - | chr2_2:55562868-55562887 | None:intergenic | 35.0% | |
| CTTAGCCAGCTTCAATAAAT+TGG | + | chr2_2:55562950-55562969 | Msa0258890:CDS | 35.0% | |
| CAATAATCTCACTTCACTTG+AGG | + | chr2_2:55562992-55563011 | Msa0258890:CDS | 35.0% | |
| TATGGTGTAAAAGGGATTGA+GGG | + | chr2_2:55563100-55563119 | Msa0258890:intron | 35.0% | |
| ! | TTTGAAGTGGTTATCAGTTG+TGG | + | chr2_2:55563133-55563152 | Msa0258890:CDS | 35.0% |
| AAACATAACGCAATCCAAAC+GGG | + | chr2_2:55563516-55563535 | Msa0258890:intron | 35.0% | |
| CCGTATCATACTCTTAAAGT+GGG | - | chr2_2:55563667-55563686 | None:intergenic | 35.0% | |
| ! | CCCACTTTAAGAGTATGATA+CGG | + | chr2_2:55563664-55563683 | Msa0258890:intron | 35.0% |
| TCCGTATCATACTCTTAAAG+TGG | - | chr2_2:55563668-55563687 | None:intergenic | 35.0% | |
| AGTTAATTCCAATTGGATGC+TGG | + | chr2_2:55563693-55563712 | Msa0258890:intron | 35.0% | |
| ! | ATTTTACACCAGCATCCAAT+TGG | - | chr2_2:55563704-55563723 | None:intergenic | 35.0% |
| TTTAACGATCTGACTATCTG+AGG | - | chr2_2:55563835-55563854 | None:intergenic | 35.0% | |
| TGACCTTCTTCATACAACTT+TGG | - | chr2_2:55563956-55563975 | None:intergenic | 35.0% | |
| AAGTTGTATGAAGAAGGTCA+TGG | + | chr2_2:55563956-55563975 | Msa0258890:intron | 35.0% | |
| AACTAAACAATTCCACTTGG+TGG | - | chr2_2:55564073-55564092 | None:intergenic | 35.0% | |
| CGAAACTAAACAATTCCACT+TGG | - | chr2_2:55564076-55564095 | None:intergenic | 35.0% | |
| TTTATACGATCATGTGAACC+AGG | + | chr2_2:55564525-55564544 | Msa0258890:intron | 35.0% | |
| ! | TTTTTCCTGCATTTAGTACC+TGG | - | chr2_2:55564546-55564565 | None:intergenic | 35.0% |
| ACTTTCAAAATAGATGAGGC+TGG | - | chr2_2:55564657-55564676 | None:intergenic | 35.0% | |
| CATCTGATCAAGTTTGCAAA+TGG | - | chr2_2:55564801-55564820 | None:intergenic | 35.0% | |
| !! | AGTCTGAAAAAGATGGACTA+TGG | - | chr2_2:55564914-55564933 | None:intergenic | 35.0% |
| TCGCTAAAGTCTGAAAAAGA+TGG | - | chr2_2:55564921-55564940 | None:intergenic | 35.0% | |
| CTCTTCTTATAAAACCCCTT+GGG | - | chr2_2:55565185-55565204 | None:intergenic | 35.0% | |
| GCCAAATAATATCTTGCTGA+TGG | + | chr2_2:55565301-55565320 | Msa0258890:intron | 35.0% | |
| CTCAATCTGACAATGTGAAA+GGG | - | chr2_2:55565532-55565551 | None:intergenic | 35.0% | |
| CTTTCACATTGTCAGATTGA+GGG | + | chr2_2:55565531-55565550 | Msa0258890:CDS | 35.0% | |
| CAGTTCAACACAAAACTTGA+GGG | - | chr2_2:55565568-55565587 | None:intergenic | 35.0% | |
| TCAGTTCAACACAAAACTTG+AGG | - | chr2_2:55565569-55565588 | None:intergenic | 35.0% | |
| ! | GAATTGTGCATTAGTTCTTC+TGG | - | chr2_2:55565784-55565803 | None:intergenic | 35.0% |
| AGCTTCGGAATTTAGATTTG+GGG | + | chr2_2:55565806-55565825 | Msa0258890:CDS | 35.0% | |
| AGACAACGATAAAACGTTGT+TGG | - | chr2_2:55565885-55565904 | None:intergenic | 35.0% | |
| ! | CAATACAAGATGAAGGTACA+TGG | - | chr2_2:55565919-55565938 | None:intergenic | 35.0% |
| ACAGTTGCAATACAAGATGA+AGG | - | chr2_2:55565926-55565945 | None:intergenic | 35.0% | |
| TCATCTTGTATTGCAACTGT+AGG | + | chr2_2:55565926-55565945 | Msa0258890:intron | 35.0% | |
| ACTTTCTCATTTGTAGCAAC+AGG | - | chr2_2:55565999-55566018 | None:intergenic | 35.0% | |
| AGATCATGTCGATCAAAATG+AGG | + | chr2_2:55566225-55566244 | Msa0258890:CDS | 35.0% | |
| GGAAAATACAGGTCATAACA+AGG | + | chr2_2:55566342-55566361 | Msa0258890:CDS | 35.0% | |
| ACAGGTCATAACAAGGATAA+TGG | + | chr2_2:55566349-55566368 | Msa0258890:CDS | 35.0% | |
| ! | GTTGATTTATTCTTCGTGTC+AGG | - | chr2_2:55566412-55566431 | None:intergenic | 35.0% |
| AACAAGCTAAAAAAGGACGA+CGG | + | chr2_2:55566436-55566455 | Msa0258890:CDS | 35.0% | |
| AATGTCAGCAAATGAAGCTT+CGG | - | chr2_2:55566572-55566591 | None:intergenic | 35.0% | |
| GATCAGGAAAATCTGAATCA+TGG | + | chr2_2:55566604-55566623 | Msa0258890:CDS | 35.0% | |
| ! | AGACTCCACTTTATGCATTT+TGG | - | chr2_2:55566716-55566735 | None:intergenic | 35.0% |
| TCATCTCCAGTAACAGAAAT+TGG | + | chr2_2:55566739-55566758 | Msa0258890:CDS | 35.0% | |
| TCCAGTAACAGAAATTGGAA+TGG | + | chr2_2:55566744-55566763 | Msa0258890:CDS | 35.0% | |
| CCAGTAACAGAAATTGGAAT+GGG | + | chr2_2:55566745-55566764 | Msa0258890:CDS | 35.0% | |
| !! | CAGTAGGTTTTTAAGCATAG+CGG | - | chr2_2:55566816-55566835 | None:intergenic | 35.0% |
| TGAGTCAGTAAGAAAACAGT+AGG | - | chr2_2:55566832-55566851 | None:intergenic | 35.0% | |
| ATTGCATTTCTCCTTGTTCA+GGG | + | chr2_2:55566867-55566886 | Msa0258890:three_prime_UTR | 35.0% | |
| TGATCAGTATGAATCGAACT+CGG | + | chr2_2:55566928-55566947 | Msa0258890:three_prime_UTR | 35.0% | |
| AGAGACAAACATCACAAGTA+GGG | - | chr2_2:55567050-55567069 | None:intergenic | 35.0% | |
| AAGAGACAAACATCACAAGT+AGG | - | chr2_2:55567051-55567070 | None:intergenic | 35.0% | |
| TCATAGTAGTCATGCAAAAG+GGG | - | chr2_2:55567187-55567206 | None:intergenic | 35.0% | |
| TGGCAAATGCAACAATATCT+TGG | + | chr2_2:55567310-55567329 | Msa0258890:three_prime_UTR | 35.0% | |
| ! | GGAAATTGAACTTGGATTGG+CGG | - | chr2_2:55562794-55562813 | None:intergenic | 40.0% |
| TTAGAGAAAAGAAAAGGGGG+TGG | - | chr2_2:55562862-55562881 | None:intergenic | 40.0% | |
| GTATGGTGTAAAAGGGATTG+AGG | + | chr2_2:55563099-55563118 | Msa0258890:intron | 40.0% | |
| ! | GGGCATGTGTTAATTTGAAG+TGG | + | chr2_2:55563120-55563139 | Msa0258890:CDS | 40.0% |
| GAAAGCTTGGAAGGAATTCA+AGG | + | chr2_2:55563167-55563186 | Msa0258890:CDS | 40.0% | |
| GTGGAATACACGGTTACTAT+TGG | - | chr2_2:55563627-55563646 | None:intergenic | 40.0% | |
| ! | AATTCCACTTGGTGGCAATT+TGG | - | chr2_2:55564065-55564084 | None:intergenic | 40.0% |
| GTAGAAACCTTTCATCTCAC+AGG | + | chr2_2:55564246-55564265 | Msa0258890:intron | 40.0% | |
| TGTTAAGCTTGTACAGAGAG+TGG | + | chr2_2:55564320-55564339 | Msa0258890:intron | 40.0% | |
| ! | TGCTGAGTTATTTCCCGAAA+CGG | + | chr2_2:55564348-55564367 | Msa0258890:intron | 40.0% |
| AAATGAAGAATCCCCGTTTC+GGG | - | chr2_2:55564364-55564383 | None:intergenic | 40.0% | |
| GAAATGAAGAATCCCCGTTT+CGG | - | chr2_2:55564365-55564384 | None:intergenic | 40.0% | |
| ATTCAAAATCAGTGCACGGA+GGG | - | chr2_2:55564608-55564627 | None:intergenic | 40.0% | |
| CACCATTCAAAATCAGTGCA+CGG | - | chr2_2:55564612-55564631 | None:intergenic | 40.0% | |
| TGCTGTGCTTTCATCACAAT+AGG | + | chr2_2:55564956-55564975 | Msa0258890:intron | 40.0% | |
| AGGATCAACAGTATTTCCCA+AGG | + | chr2_2:55565166-55565185 | Msa0258890:intron | 40.0% | |
| GGATCAACAGTATTTCCCAA+GGG | + | chr2_2:55565167-55565186 | Msa0258890:intron | 40.0% | |
| GATCAACAGTATTTCCCAAG+GGG | + | chr2_2:55565168-55565187 | Msa0258890:intron | 40.0% | |
| CCTCTTCTTATAAAACCCCT+TGG | - | chr2_2:55565186-55565205 | None:intergenic | 40.0% | |
| !! | CCAAGGGGTTTTATAAGAAG+AGG | + | chr2_2:55565183-55565202 | Msa0258890:intron | 40.0% |
| !! | AGGGGTTTTATAAGAAGAGG+AGG | + | chr2_2:55565186-55565205 | Msa0258890:intron | 40.0% |
| GAAGGTGAAATCCATCACAA+AGG | + | chr2_2:55565408-55565427 | Msa0258890:CDS | 40.0% | |
| GGCAAACATTACCTTTGTGA+TGG | - | chr2_2:55565422-55565441 | None:intergenic | 40.0% | |
| TAAAGGAGCTCAACAGCTTA+GGG | - | chr2_2:55565444-55565463 | None:intergenic | 40.0% | |
| CCTCAATCTGACAATGTGAA+AGG | - | chr2_2:55565533-55565552 | None:intergenic | 40.0% | |
| CCTTTCACATTGTCAGATTG+AGG | + | chr2_2:55565530-55565549 | Msa0258890:CDS | 40.0% | |
| !!! | AGGTGATCCCTTGCTTTTTT+TGG | + | chr2_2:55566027-55566046 | Msa0258890:intron | 40.0% |
| GCGTTGAATACTTGTAGCTT+TGG | - | chr2_2:55566136-55566155 | None:intergenic | 40.0% | |
| CAAGTGACCTTTCTCATTCT+TGG | - | chr2_2:55566179-55566198 | None:intergenic | 40.0% | |
| ATCTTGAAGCTGCTGACAAA+AGG | + | chr2_2:55566254-55566273 | Msa0258890:CDS | 40.0% | |
| AACTGTTGATGTATCCGAGA+AGG | + | chr2_2:55566300-55566319 | Msa0258890:CDS | 40.0% | |
| CTCTCGAGGAGAATGTTAAT+AGG | + | chr2_2:55566482-55566501 | Msa0258890:CDS | 40.0% | |
| CAGGAAAATCTGAATCATGG+TGG | + | chr2_2:55566607-55566626 | Msa0258890:CDS | 40.0% | |
| ATTTCAAATCCTTAGGCGCT+TGG | - | chr2_2:55566651-55566670 | None:intergenic | 40.0% | |
| GAGTGCCAAAATGCATAAAG+TGG | + | chr2_2:55566708-55566727 | Msa0258890:CDS | 40.0% | |
| CCCATTCCAATTTCTGTTAC+TGG | - | chr2_2:55566748-55566767 | None:intergenic | 40.0% | |
| GTAACAGAAATTGGAATGGG+AGG | + | chr2_2:55566748-55566767 | Msa0258890:CDS | 40.0% | |
| CATTGCATTTCTCCTTGTTC+AGG | + | chr2_2:55566866-55566885 | Msa0258890:three_prime_UTR | 40.0% | |
| AAACCATTTGTGCTAAACCC+AGG | + | chr2_2:55566988-55567007 | Msa0258890:three_prime_UTR | 40.0% | |
| GTGAATTGCACATCAGATTC+TGG | + | chr2_2:55567024-55567043 | Msa0258890:three_prime_UTR | 40.0% | |
| ATGGTATACATCTGAACCAC+TGG | + | chr2_2:55567290-55567309 | Msa0258890:three_prime_UTR | 40.0% | |
| GATATTGTTGCATTTGCCAG+TGG | - | chr2_2:55567309-55567328 | None:intergenic | 40.0% | |
| TTCCTCACTGCACTCATTCA+AGG | - | chr2_2:55562725-55562744 | None:intergenic | 45.0% | |
| GCTGTCGTTCAATACTTGCT+CGG | - | chr2_2:55562767-55562786 | None:intergenic | 45.0% | |
| TTTGTGAGTGAGGTGAAGAC+TGG | - | chr2_2:55562815-55562834 | None:intergenic | 45.0% | |
| GGGTGGAAAGAAGGTTACAT+CGG | - | chr2_2:55562845-55562864 | None:intergenic | 45.0% | |
| AAGAAAAGGGGGTGGAAAGA+AGG | - | chr2_2:55562854-55562873 | None:intergenic | 45.0% | |
| TCTTGTGTTAAGGGCCTGTT+TGG | + | chr2_2:55563330-55563349 | Msa0258890:intron | 45.0% | |
| TGTTAAGGGCCTGTTTGGAT+TGG | + | chr2_2:55563335-55563354 | Msa0258890:intron | 45.0% | |
| AGCATGACCTGTGAGATGAA+AGG | - | chr2_2:55564256-55564275 | None:intergenic | 45.0% | |
| ! | GCTGAGTTATTTCCCGAAAC+GGG | + | chr2_2:55564349-55564368 | Msa0258890:intron | 45.0% |
| ! | CTGAGTTATTTCCCGAAACG+GGG | + | chr2_2:55564350-55564369 | Msa0258890:intron | 45.0% |
| GTGAACCAGGTACTAAATGC+AGG | + | chr2_2:55564538-55564557 | Msa0258890:intron | 45.0% | |
| CATTCAAAATCAGTGCACGG+AGG | - | chr2_2:55564609-55564628 | None:intergenic | 45.0% | |
| !!! | CTCCGTGCACTGATTTTGAA+TGG | + | chr2_2:55564607-55564626 | Msa0258890:CDS | 45.0% |
| ! | AGTCCTAAGATTTTCTGCGC+TGG | + | chr2_2:55564873-55564892 | Msa0258890:intron | 45.0% |
| TCCTATCCGTAAAATTGGCG+AGG | + | chr2_2:55565378-55565397 | Msa0258890:CDS | 45.0% | |
| ! | TCAGAGCCTCGCCAATTTTA+CGG | - | chr2_2:55565387-55565406 | None:intergenic | 45.0% |
| AAAGGAGCTCAACAGCTTAG+GGG | - | chr2_2:55565443-55565462 | None:intergenic | 45.0% | |
| CTAAAGGAGCTCAACAGCTT+AGG | - | chr2_2:55565445-55565464 | None:intergenic | 45.0% | |
| GACAATGTGAAAGGGAAAGC+TGG | - | chr2_2:55565524-55565543 | None:intergenic | 45.0% | |
| GTTGATGTATCCGAGAAGGA+AGG | + | chr2_2:55566304-55566323 | Msa0258890:CDS | 45.0% | |
| ATGTATCCGAGAAGGAAGGT+GGG | + | chr2_2:55566308-55566327 | Msa0258890:CDS | 45.0% | |
| !! | AGAGCCAAAGCTTTTTCCGA+GGG | - | chr2_2:55566466-55566485 | None:intergenic | 45.0% |
| TTGGCACTCTTATGCTTGAC+AGG | - | chr2_2:55566697-55566716 | None:intergenic | 45.0% | |
| GAATGGGAGGTTCATCAACA+TGG | + | chr2_2:55566761-55566780 | Msa0258890:CDS | 45.0% | |
| TGAATCGAACTCGGTACTCT+AGG | + | chr2_2:55566937-55566956 | Msa0258890:three_prime_UTR | 45.0% | |
| GAATCGAACTCGGTACTCTA+GGG | + | chr2_2:55566938-55566957 | Msa0258890:three_prime_UTR | 45.0% | |
| ! | TCACATATTAGCCTCCACCT+GGG | - | chr2_2:55567008-55567027 | None:intergenic | 45.0% |
| ! | TTCACATATTAGCCTCCACC+TGG | - | chr2_2:55567009-55567028 | None:intergenic | 45.0% |
| AGTAGTCATGCAAAAGGGGA+GGG | - | chr2_2:55567183-55567202 | None:intergenic | 45.0% | |
| TAGTAGTCATGCAAAAGGGG+AGG | - | chr2_2:55567184-55567203 | None:intergenic | 45.0% | |
| TGCCTTGAATGAGTGCAGTG+AGG | + | chr2_2:55562720-55562739 | Msa0258890:five_prime_UTR | 50.0% | |
| ! | CGGAAAGAGCTTTGTGAGTG+AGG | - | chr2_2:55562825-55562844 | None:intergenic | 50.0% |
| GCTGGCTAAGCATGATACCT+GGG | - | chr2_2:55562940-55562959 | None:intergenic | 50.0% | |
| AGCTGGCTAAGCATGATACC+TGG | - | chr2_2:55562941-55562960 | None:intergenic | 50.0% | |
| ! | TAGCACGTTTAGGACCCGTT+TGG | - | chr2_2:55563533-55563552 | None:intergenic | 50.0% |
| TTGGCCAAATTGCCACCAAG+TGG | + | chr2_2:55564058-55564077 | Msa0258890:intron | 50.0% | |
| CTGCCAGCGCAGAAAATCTT+AGG | - | chr2_2:55564879-55564898 | None:intergenic | 50.0% | |
| !! | CTAAGATTTTCTGCGCTGGC+AGG | + | chr2_2:55564877-55564896 | Msa0258890:intron | 50.0% |
| ! | GCCTCGCCAATTTTACGGAT+AGG | - | chr2_2:55565382-55565401 | None:intergenic | 50.0% |
| !! | AATTGGCGAGGCTCTGAAGA+AGG | + | chr2_2:55565390-55565409 | Msa0258890:CDS | 50.0% |
| GATGTATCCGAGAAGGAAGG+TGG | + | chr2_2:55566307-55566326 | Msa0258890:CDS | 50.0% | |
| TGTATCCGAGAAGGAAGGTG+GGG | + | chr2_2:55566309-55566328 | Msa0258890:CDS | 50.0% | |
| ATAGACCCCACCTTCCTTCT+CGG | - | chr2_2:55566317-55566336 | None:intergenic | 50.0% | |
| GGAAGGTGGGGTCTATGATA+AGG | + | chr2_2:55566321-55566340 | Msa0258890:CDS | 50.0% | |
| CAAGCCCTCGGAAAAAGCTT+TGG | + | chr2_2:55566459-55566478 | Msa0258890:CDS | 50.0% | |
| !! | GAGAGCCAAAGCTTTTTCCG+AGG | - | chr2_2:55566467-55566486 | None:intergenic | 50.0% |
| !! | GGAAAAAGCTTTGGCTCTCG+AGG | + | chr2_2:55566468-55566487 | Msa0258890:CDS | 50.0% |
| AACTGTGCTCACCCTGAACA+AGG | - | chr2_2:55566881-55566900 | None:intergenic | 50.0% | |
| CCACCTGGGTTTAGCACAAA+TGG | - | chr2_2:55566994-55567013 | None:intergenic | 50.0% | |
| CCATTTGTGCTAAACCCAGG+TGG | + | chr2_2:55566991-55567010 | Msa0258890:three_prime_UTR | 50.0% | |
| TTTGTGCTAAACCCAGGTGG+AGG | + | chr2_2:55566994-55567013 | Msa0258890:three_prime_UTR | 50.0% | |
| GTAGTCATGCAAAAGGGGAG+GGG | - | chr2_2:55567182-55567201 | None:intergenic | 50.0% | |
| GGGAAAGCTGGAACCAGAAG+AGG | - | chr2_2:55565512-55565531 | None:intergenic | 55.0% | |
| GCTACAGAACCAAGCGCCTA+AGG | + | chr2_2:55566639-55566658 | Msa0258890:CDS | 55.0% | |
| AAAGGACGACGGCAAGCCCT+CGG | + | chr2_2:55566447-55566466 | Msa0258890:CDS | 60.0% | |
| CATGCAAAAGGGGAGGGGAG+AGG | - | chr2_2:55567177-55567196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55562701 | 55567360 | 55562701 | ID=Msa0258890;Name=Msa0258890 |
| chr2_2 | mRNA | 55562701 | 55567360 | 55562701 | ID=Msa0258890-mRNA-1;Parent=Msa0258890;Name=Msa0258890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=47|1|1|1|1|1|10|568|468 |
| chr2_2 | exon | 55562701 | 55562846 | 55562701 | ID=Msa0258890-mRNA-1:exon:16775;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55562942 | 55563013 | 55562942 | ID=Msa0258890-mRNA-1:exon:16776;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55563113 | 55563205 | 55563113 | ID=Msa0258890-mRNA-1:exon:16777;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55564547 | 55564628 | 55564547 | ID=Msa0258890-mRNA-1:exon:16778;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55564783 | 55564839 | 55564783 | ID=Msa0258890-mRNA-1:exon:16779;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55565365 | 55565429 | 55565365 | ID=Msa0258890-mRNA-1:exon:16780;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55565525 | 55565620 | 55565525 | ID=Msa0258890-mRNA-1:exon:16781;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55565775 | 55565861 | 55565775 | ID=Msa0258890-mRNA-1:exon:16782;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55565948 | 55566028 | 55565948 | ID=Msa0258890-mRNA-1:exon:16783;Parent=Msa0258890-mRNA-1 |
| chr2_2 | exon | 55566118 | 55567360 | 55566118 | ID=Msa0258890-mRNA-1:exon:16784;Parent=Msa0258890-mRNA-1 |
| chr2_2 | five_prime_UTR | 55562701 | 55562747 | 55562701 | ID=Msa0258890-mRNA-1:five_prime_utr;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55562748 | 55562846 | 55562748 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55562942 | 55563013 | 55562942 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55563113 | 55563205 | 55563113 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55564547 | 55564628 | 55564547 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55564783 | 55564839 | 55564783 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55565365 | 55565429 | 55565365 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55565525 | 55565620 | 55565525 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55565775 | 55565861 | 55565775 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55565948 | 55566028 | 55565948 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | CDS | 55566118 | 55566792 | 55566118 | ID=Msa0258890-mRNA-1:cds;Parent=Msa0258890-mRNA-1 |
| chr2_2 | three_prime_UTR | 55566793 | 55567360 | 55566793 | ID=Msa0258890-mRNA-1:three_prime_utr;Parent=Msa0258890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
