Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079390 | sp|P27990|PALY_MEDSA | 97.379 | 725 | 19 | 0 | 1 | 725 | 1 | 725 | 0.0 | 1460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079390 | A0A396H6R9 | 97.931 | 725 | 14 | 1 | 1 | 725 | 1 | 724 | 0.0 | 1468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1079360 | Msa1079390 | 0.897827 | 9.639574e-77 | -8.615850e-47 |
| Msa1079390 | Msa1079400 | 0.941636 | 2.947098e-101 | -8.615850e-47 |
| Msa1079390 | Msa1079410 | 0.921776 | 2.315268e-88 | -8.615850e-47 |
| Msa1079390 | Msa1123600 | 0.896726 | 2.797923e-76 | -8.615850e-47 |
| Msa1079390 | Msa1123610 | 0.942377 | 8.001415e-102 | -8.615850e-47 |
| Msa1079390 | Msa1168520 | 0.860986 | 1.408564e-63 | -8.615850e-47 |
| Msa1079390 | Msa1168530 | 0.881323 | 2.641596e-70 | -8.615850e-47 |
| Msa1079390 | Msa1168540 | 0.935007 | 1.666762e-96 | -8.615850e-47 |
| Msa1079390 | Msa1168600 | 0.805176 | 1.514807e-49 | -8.615850e-47 |
| Msa1079390 | Msa1168610 | 0.913517 | 5.615385e-84 | -8.615850e-47 |
| Msa1079390 | Msa1168620 | 0.909804 | 3.795724e-82 | -8.615850e-47 |
| Msa1079390 | Msa1168700 | 0.892291 | 1.817099e-74 | -8.615850e-47 |
| Msa1079390 | Msa1168710 | 0.910958 | 1.045684e-82 | -8.615850e-47 |
| Msa0259650 | Msa1079390 | 0.810594 | 1.066576e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079390 | MtrunA17_Chr7g0264311 | 97.931 | 725 | 14 | 1 | 1 | 725 | 1 | 724 | 0.0 | 1468 |
| Msa1079390 | MtrunA17_Chr7g0264351 | 97.655 | 725 | 16 | 1 | 1 | 725 | 1 | 724 | 0.0 | 1465 |
| Msa1079390 | MtrunA17_Chr7g0264341 | 97.655 | 725 | 16 | 1 | 1 | 725 | 1 | 724 | 0.0 | 1464 |
| Msa1079390 | MtrunA17_Chr1g0181091 | 89.013 | 719 | 70 | 1 | 7 | 725 | 3 | 712 | 0.0 | 1325 |
| Msa1079390 | MtrunA17_Chr1g0199551 | 79.462 | 706 | 145 | 0 | 20 | 725 | 17 | 722 | 0.0 | 1193 |
| Msa1079390 | MtrunA17_Chr5g0448361 | 73.513 | 706 | 185 | 2 | 20 | 724 | 4 | 708 | 0.0 | 1073 |
| Msa1079390 | MtrunA17_Chr2g0326921 | 75.393 | 699 | 168 | 3 | 28 | 724 | 1 | 697 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079390 | AT2G37040.1 | 83.405 | 699 | 116 | 0 | 27 | 725 | 27 | 725 | 0.0 | 1241 |
| Msa1079390 | AT3G53260.1 | 82.973 | 693 | 118 | 0 | 33 | 725 | 25 | 717 | 0.0 | 1222 |
| Msa1079390 | AT3G10340.1 | 80.199 | 702 | 137 | 2 | 25 | 725 | 7 | 707 | 0.0 | 1170 |
| Msa1079390 | AT5G04230.1 | 73.994 | 696 | 165 | 6 | 33 | 725 | 12 | 694 | 0.0 | 1045 |
| Msa1079390 | AT5G04230.2 | 73.571 | 700 | 165 | 7 | 33 | 725 | 12 | 698 | 0.0 | 1040 |
Find 183 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAGGTTTCTTTCTAATT+TGG | 0.138990 | 7_2:-78517460 | None:intergenic |
| TGCTATTATGGAACACATTT+TGG | 0.178379 | 7_2:+78519262 | Msa1079390:CDS |
| CGATCCTCTTCTTGAATGTT+TGG | 0.179959 | 7_2:+78520402 | Msa1079390:CDS |
| CTTGCACTTTCAACCTCTTT+TGG | 0.188235 | 7_2:-78520199 | None:intergenic |
| GGTCCATGAGCTTTGGAATT+TGG | 0.199307 | 7_2:-78518966 | None:intergenic |
| TTCCATTCTTATAAAATTCT+AGG | 0.206360 | 7_2:+78517563 | Msa1079390:five_prime_UTR |
| CTGCATCCATTGATCTTGTT+TGG | 0.230681 | 7_2:-78520253 | None:intergenic |
| AATTGAGGCTGCTGCTATTA+TGG | 0.231999 | 7_2:+78519250 | Msa1079390:CDS |
| TCTCTTCGAGGCTAACATTT+TGG | 0.233973 | 7_2:+78519124 | Msa1079390:CDS |
| TTCCTATTTGTTAACTTTGT+TGG | 0.249805 | 7_2:+78520446 | Msa1079390:exon |
| AGTGCATATCTATCTTGTTT+TGG | 0.270938 | 7_2:-78519344 | None:intergenic |
| AGCAATTGATTTAAGACATT+TGG | 0.279595 | 7_2:+78519871 | Msa1079390:CDS |
| TGCATCCATTGATCTTGTTT+GGG | 0.293205 | 7_2:-78520252 | None:intergenic |
| CTGCAAAGCACCACCTTGTT+TGG | 0.301759 | 7_2:-78518024 | None:intergenic |
| CAACCAAGATGTGAACTCTT+TGG | 0.302868 | 7_2:+78519766 | Msa1079390:CDS |
| GTAGATCATGCACTAGTTAA+TGG | 0.316257 | 7_2:+78520100 | Msa1079390:CDS |
| AGAAATCCTAGCTTGGATTA+TGG | 0.318763 | 7_2:+78519647 | Msa1079390:CDS |
| GTTCCTCTTTCATACATTGC+TGG | 0.323630 | 7_2:+78518927 | Msa1079390:CDS |
| AACTTTCAAGGAACACCTAT+TGG | 0.329701 | 7_2:+78519503 | Msa1079390:CDS |
| AACGGAACAGCCGTTGGTTC+CGG | 0.342001 | 7_2:+78519086 | Msa1079390:CDS |
| AGCTTTGGAATTTGGTCTTC+CGG | 0.346211 | 7_2:-78518958 | None:intergenic |
| AGTAGTTAGGCTTTATATAG+AGG | 0.352906 | 7_2:-78517476 | None:intergenic |
| AGGAATTCGATTTGAAATCT+TGG | 0.354058 | 7_2:+78518824 | Msa1079390:CDS |
| TCCAGATGGTCCATGAGCTT+TGG | 0.356557 | 7_2:-78518973 | None:intergenic |
| AACCAAGATGTGAACTCTTT+GGG | 0.363040 | 7_2:+78519767 | Msa1079390:CDS |
| ATGGAGTAACGTTGTTGTTA+AGG | 0.365275 | 7_2:-78518863 | None:intergenic |
| GTCAAATGATCGGTAAATTC+AGG | 0.365364 | 7_2:-78519200 | None:intergenic |
| ACCCTCCTCCAAGGTTATTC+AGG | 0.367094 | 7_2:+78518804 | Msa1079390:CDS |
| TTGATCTTGTTTGGGATTGT+TGG | 0.367656 | 7_2:-78520244 | None:intergenic |
| GATCCTCTTCTTGAATGTTT+GGG | 0.377705 | 7_2:+78520403 | Msa1079390:CDS |
| TGATCTTGTTTGGGATTGTT+GGG | 0.385272 | 7_2:-78520243 | None:intergenic |
| TACCACCACACAACAAATAA+AGG | 0.386653 | 7_2:+78517586 | Msa1079390:five_prime_UTR |
| GAAGGCCTTGCCCTTGTTAA+CGG | 0.392707 | 7_2:+78519068 | Msa1079390:CDS |
| CTACTCGCAGAAAGATTTGA+AGG | 0.395081 | 7_2:-78519626 | None:intergenic |
| GAGTTAAGGCCAGCAGTGAC+TGG | 0.396808 | 7_2:+78517925 | Msa1079390:CDS |
| TCCAAAGCTCATGGACCATC+TGG | 0.398114 | 7_2:+78518972 | Msa1079390:CDS |
| AACTACTTCCTTCACAAATC+AGG | 0.398972 | 7_2:+78517492 | Msa1079390:five_prime_UTR |
| ATGAAGCTGATCCTTTGAAT+TGG | 0.399923 | 7_2:+78517724 | Msa1079390:CDS |
| TACGGTGTCACCACCGGGTT+CGG | 0.400782 | 7_2:+78517981 | Msa1079390:CDS |
| GATTTGTGAAGGAAGTAGTT+AGG | 0.403389 | 7_2:-78517489 | None:intergenic |
| TACATTGCTGGTTTACTAAC+CGG | 0.404088 | 7_2:+78518939 | Msa1079390:CDS |
| AACCAACAAAGTTAACAAAT+AGG | 0.407177 | 7_2:-78520448 | None:intergenic |
| CTCTGAACATGGGTTGTAAC+CGG | 0.407312 | 7_2:-78519731 | None:intergenic |
| GTTACAATATCTTGCAAATC+CGG | 0.407527 | 7_2:+78519712 | Msa1079390:CDS |
| CGCGGTACAATCACAGCTTC+AGG | 0.409342 | 7_2:+78518897 | Msa1079390:CDS |
| TTCTTGAATGTTTGGGAGAG+TGG | 0.413240 | 7_2:+78520410 | Msa1079390:CDS |
| TGAAGCTGATCCTTTGAATT+GGG | 0.415897 | 7_2:+78517725 | Msa1079390:CDS |
| AATCAAGCAGAATGATTCAT+TGG | 0.416820 | 7_2:-78517670 | None:intergenic |
| CGTTTGGCTCTCGCATCAAT+TGG | 0.423324 | 7_2:+78519545 | Msa1079390:CDS |
| TAATCAATACTATTAAGATA+TGG | 0.423342 | 7_2:+78517614 | Msa1079390:exon |
| CAAGACGGACCACCGGCTTC+CGG | 0.424699 | 7_2:-78517812 | None:intergenic |
| AGCTTCTATTGTTCTCTTCG+AGG | 0.427276 | 7_2:+78519112 | Msa1079390:CDS |
| ATCTGCTAGGGATGGAGTTA+AGG | 0.427510 | 7_2:+78517911 | Msa1079390:CDS |
| TAGCTTGGATTATGGTTTCA+AGG | 0.427578 | 7_2:+78519655 | Msa1079390:CDS |
| ACAAGGGCAAGGCCTTCTTT+TGG | 0.433813 | 7_2:-78519062 | None:intergenic |
| CTAGGAACTGGTTTACTAAC+CGG | 0.436001 | 7_2:+78520310 | Msa1079390:CDS |
| TACCTTTAACTAATATGAAA+AGG | 0.437759 | 7_2:+78520530 | Msa1079390:three_prime_UTR |
| GAGGTTTCTTTCTAATTTGG+AGG | 0.442189 | 7_2:-78517457 | None:intergenic |
| GAGAACAATAGAAGCTAAAC+CGG | 0.444891 | 7_2:-78519105 | None:intergenic |
| CGGAAGCCGGTGGTCCGTCT+TGG | 0.445172 | 7_2:+78517813 | Msa1079390:CDS |
| ATATTGTAACTCAGAACAAT+AGG | 0.445191 | 7_2:-78519699 | None:intergenic |
| TTGCATGGTGGAAACTTTCA+AGG | 0.445309 | 7_2:+78519491 | Msa1079390:CDS |
| ATCCATGGATAATACACGTT+TGG | 0.447022 | 7_2:+78519529 | Msa1079390:CDS |
| GTGCGAGGTGGCGCCGAACC+CGG | 0.448163 | 7_2:-78517994 | None:intergenic |
| GTGAGAGAGGAGCTAGGAAC+TGG | 0.450724 | 7_2:+78520298 | Msa1079390:CDS |
| AATGTCTTAAATCAATTGCT+TGG | 0.454815 | 7_2:-78519868 | None:intergenic |
| CTCCATCACCCAGTCACTGC+TGG | 0.457530 | 7_2:-78517934 | None:intergenic |
| ACTTGTTGAAAGTGGTTGAC+AGG | 0.460419 | 7_2:+78520002 | Msa1079390:CDS |
| AATTGATTTAAGACATTTGG+AGG | 0.465528 | 7_2:+78519874 | Msa1079390:CDS |
| TTCTTGAAACATCAATCAAA+GGG | 0.465561 | 7_2:-78519460 | None:intergenic |
| GTTGCTCAGCACTCTGAACA+TGG | 0.466921 | 7_2:-78519742 | None:intergenic |
| TTATCCATGGATACTCCAAT+AGG | 0.467287 | 7_2:-78519518 | None:intergenic |
| ACTCTTACCATGGGTGTCAA+TGG | 0.467649 | 7_2:+78519947 | Msa1079390:CDS |
| AAGCCGGTGGTCCGTCTTGG+TGG | 0.472146 | 7_2:+78517816 | Msa1079390:CDS |
| TTTGAATTACAACCAAAAGA+AGG | 0.473227 | 7_2:+78519050 | Msa1079390:CDS |
| CTTTGCAGAAAGAACTCATC+AGG | 0.476918 | 7_2:+78518039 | Msa1079390:CDS |
| TTTCTTGAAACATCAATCAA+AGG | 0.480962 | 7_2:-78519461 | None:intergenic |
| TGCGAGTAGAAATCCTAGCT+TGG | 0.486374 | 7_2:+78519640 | Msa1079390:CDS |
| AACCCAAAGAGTTCACATCT+TGG | 0.486755 | 7_2:-78519769 | None:intergenic |
| GACAGTTACGGTGTCACCAC+CGG | 0.492715 | 7_2:+78517975 | Msa1079390:CDS |
| AATGCTGGAATATTTGGAAA+CGG | 0.493618 | 7_2:+78518717 | Msa1079390:CDS |
| TCTCTCACAAACTTGTAAAG+TGG | 0.494956 | 7_2:-78520283 | None:intergenic |
| CGAGACACTGACGATTTCTC+AGG | 0.498607 | 7_2:+78517839 | Msa1079390:CDS |
| AAATGTCATTTCACCGGGTG+AGG | 0.499354 | 7_2:+78520336 | Msa1079390:CDS |
| AGCTTGGATTATGGTTTCAA+GGG | 0.499976 | 7_2:+78519656 | Msa1079390:CDS |
| CAAGTGTATCAATAATCATT+CGG | 0.504995 | 7_2:+78520501 | Msa1079390:three_prime_UTR |
| TGCACATGACCATGGTGTGC+AGG | 0.506601 | 7_2:+78517875 | Msa1079390:CDS |
| ACAATCCCAAACAAGATCAA+TGG | 0.508299 | 7_2:+78520247 | Msa1079390:CDS |
| ATCGAATTCCTGAATAACCT+TGG | 0.509073 | 7_2:-78518812 | None:intergenic |
| AGCGTATGGTGGAGGAGTAC+CGG | 0.511195 | 7_2:+78517793 | Msa1079390:CDS |
| AACAAAGGCACGGACAGTTA+CGG | 0.520670 | 7_2:+78517963 | Msa1079390:CDS |
| GAAGACCCTCTTGCCAAAAG+AGG | 0.521788 | 7_2:+78520186 | Msa1079390:CDS |
| TTCCTTTATTTGTTGTGTGG+TGG | 0.524448 | 7_2:-78517588 | None:intergenic |
| GCAGCTCTTGTTGCTGTGTG+TGG | 0.526517 | 7_2:-78518762 | None:intergenic |
| CAACGGCTGTTCCGTTAACA+AGG | 0.526842 | 7_2:-78519079 | None:intergenic |
| GCATTAAGTATTTCTCCAGA+TGG | 0.528134 | 7_2:-78518987 | None:intergenic |
| AAACCAGCAATGTATGAAAG+AGG | 0.530089 | 7_2:-78518930 | None:intergenic |
| CGGAGAAAATGTCATTTCAC+CGG | 0.530856 | 7_2:+78520330 | Msa1079390:CDS |
| TGGAGCTGTCTGAATCTGCT+AGG | 0.530940 | 7_2:+78517898 | Msa1079390:CDS |
| CAAGGGATCTGAAATTGCCA+TGG | 0.533499 | 7_2:+78519673 | Msa1079390:CDS |
| CAACTTGTGTGTCAAATGAT+CGG | 0.535020 | 7_2:-78519210 | None:intergenic |
| AACACCTATTGGAGTATCCA+TGG | 0.535388 | 7_2:+78519514 | Msa1079390:CDS |
| AGCCAAACGTGTATTATCCA+TGG | 0.537118 | 7_2:-78519531 | None:intergenic |
| AGACCAAATTCCAAAGCTCA+TGG | 0.537132 | 7_2:+78518963 | Msa1079390:CDS |
| GGCCAGCAGTGACTGGGTGA+TGG | 0.539190 | 7_2:+78517932 | Msa1079390:CDS |
| CAAAGTTAACAAATAGGAAG+AGG | 0.539814 | 7_2:-78520442 | None:intergenic |
| ACCATGGTCATGTGCAGCAA+TGG | 0.541335 | 7_2:-78517868 | None:intergenic |
| AGAACTTCACCACAATGGCT+TGG | 0.541972 | 7_2:+78519368 | Msa1079390:CDS |
| CTCAGAACAATAGGAAGCCA+TGG | 0.547791 | 7_2:-78519690 | None:intergenic |
| TTCCTGAATAACCTTGGAGG+AGG | 0.550585 | 7_2:-78518806 | None:intergenic |
| AATCGAATCACTTCAATCAA+AGG | 0.551824 | 7_2:-78519392 | None:intergenic |
| ACTTTACAAGTTTGTGAGAG+AGG | 0.552652 | 7_2:+78520285 | Msa1079390:CDS |
| ATGTTCCTTTATTTGTTGTG+TGG | 0.553831 | 7_2:-78517591 | None:intergenic |
| TTGAAACCATAATCCAAGCT+AGG | 0.555782 | 7_2:-78519653 | None:intergenic |
| ACTCCATGTTTACCACTTCG+CGG | 0.558758 | 7_2:+78518879 | Msa1079390:CDS |
| GATCTCTCTCTCAATTGACT+TGG | 0.558820 | 7_2:-78519420 | None:intergenic |
| TCAAGAAACAAAGCTTTGCA+TGG | 0.562486 | 7_2:+78519476 | Msa1079390:CDS |
| AAGCACCACCTTGTTTGGTA+CGG | 0.564097 | 7_2:-78518019 | None:intergenic |
| GGTGGAGGAGTACCGGAAGC+CGG | 0.566790 | 7_2:+78517800 | Msa1079390:CDS |
| CTGTCTGAATCTGCTAGGGA+TGG | 0.567492 | 7_2:+78517903 | Msa1079390:CDS |
| GTTGTTAAGGAGATTTGTGA+TGG | 0.568421 | 7_2:-78518850 | None:intergenic |
| CTTGTTAACGGAACAGCCGT+TGG | 0.569066 | 7_2:+78519080 | Msa1079390:CDS |
| ACACCACCCTGGTCAAATTG+AGG | 0.572511 | 7_2:+78519235 | Msa1079390:CDS |
| AAGTTTGTGAGAGAGGAGCT+AGG | 0.574471 | 7_2:+78520292 | Msa1079390:CDS |
| CTTGTTGAAAGTGGTTGACA+GGG | 0.574600 | 7_2:+78520003 | Msa1079390:CDS |
| GCAGCAGCCTCAATTTGACC+AGG | 0.576243 | 7_2:-78519242 | None:intergenic |
| AACGGGTATGTAGCGCTACA+AGG | 0.577825 | 7_2:-78520052 | None:intergenic |
| TTTGGTACGGCGGTGCGAGG+TGG | 0.578567 | 7_2:-78518006 | None:intergenic |
| GCTGCCACACCCCAATTCAA+AGG | 0.581598 | 7_2:-78517735 | None:intergenic |
| TCGCCACCAAGACGGACCAC+CGG | 0.582161 | 7_2:-78517819 | None:intergenic |
| TCGCACCGCCGTACCAAACA+AGG | 0.582783 | 7_2:+78518011 | Msa1079390:CDS |
| CATGAGCTGAAGGATCTCAA+TGG | 0.583537 | 7_2:-78519819 | None:intergenic |
| GAATTCCTGAATAACCTTGG+AGG | 0.584127 | 7_2:-78518809 | None:intergenic |
| TGAGGTGAAGCGTATGGTGG+AGG | 0.584737 | 7_2:+78517785 | Msa1079390:CDS |
| ATCAAAGGACCAAGCCATTG+TGG | 0.585110 | 7_2:-78519377 | None:intergenic |
| GCCATTGCTGCACATGACCA+TGG | 0.585263 | 7_2:+78517867 | Msa1079390:CDS |
| CAAAAGAGGTTGAAAGTGCA+AGG | 0.585617 | 7_2:+78520200 | Msa1079390:CDS |
| TGATCCTTTGAATTGGGGTG+TGG | 0.587095 | 7_2:+78517731 | Msa1079390:CDS |
| AGGTGGAAGACATGAGCTGA+AGG | 0.588332 | 7_2:-78519829 | None:intergenic |
| GTGGCAGCTGAGGCAATGAA+AGG | 0.593497 | 7_2:+78517750 | Msa1079390:CDS |
| TCTCCCAAACATTCAAGAAG+AGG | 0.593567 | 7_2:-78520406 | None:intergenic |
| AGTTAAGGCCAGCAGTGACT+GGG | 0.595378 | 7_2:+78517926 | Msa1079390:CDS |
| AGAAGCTAAACCGGAACCAA+CGG | 0.596171 | 7_2:-78519096 | None:intergenic |
| CACCACCTTGTTTGGTACGG+CGG | 0.598168 | 7_2:-78518016 | None:intergenic |
| GTGAATTTCCTGATTTGTGA+AGG | 0.598768 | 7_2:-78517500 | None:intergenic |
| TTGTTTGGTACGGCGGTGCG+AGG | 0.600854 | 7_2:-78518009 | None:intergenic |
| TTGCTGTGTGTGGAAGTGTG+TGG | 0.602528 | 7_2:-78518752 | None:intergenic |
| CTGTTCCGTTAACAAGGGCA+AGG | 0.605368 | 7_2:-78519073 | None:intergenic |
| AGAATCAACACCCTCCTCCA+AGG | 0.605709 | 7_2:+78518795 | Msa1079390:CDS |
| CACTTAGAACTTCACCACAA+TGG | 0.606171 | 7_2:+78519363 | Msa1079390:CDS |
| GGAGCTGTCTGAATCTGCTA+GGG | 0.606450 | 7_2:+78517899 | Msa1079390:CDS |
| AGTTTGTCACACTCCTCACC+CGG | 0.607601 | 7_2:-78520349 | None:intergenic |
| TGGGTTTCCACTCTCATATG+CGG | 0.609080 | 7_2:-78520224 | None:intergenic |
| ACAGTTACGGTGTCACCACC+GGG | 0.611533 | 7_2:+78517976 | Msa1079390:CDS |
| GAATTGGGGTGTGGCAGCTG+AGG | 0.617765 | 7_2:+78517740 | Msa1079390:CDS |
| AAGTTCTCCATTGACACCCA+TGG | 0.622303 | 7_2:-78519954 | None:intergenic |
| TTGCTCAGCACTCTGAACAT+GGG | 0.623109 | 7_2:-78519741 | None:intergenic |
| TCCTGAATAACCTTGGAGGA+GGG | 0.623616 | 7_2:-78518805 | None:intergenic |
| AGAAACAAAGCTTTGCATGG+TGG | 0.624866 | 7_2:+78519479 | Msa1079390:CDS |
| GCATAGTGCAATCAAGAAGG+TGG | 0.625147 | 7_2:-78519846 | None:intergenic |
| GCAAGGACCGCATATGAGAG+TGG | 0.625862 | 7_2:+78520217 | Msa1079390:CDS |
| TTGGCATAGTGCAATCAAGA+AGG | 0.626488 | 7_2:-78519849 | None:intergenic |
| GACACTGACGATTTCTCAGG+TGG | 0.626830 | 7_2:+78517842 | Msa1079390:CDS |
| CCTTGATGAGGTGAAGCGTA+TGG | 0.628479 | 7_2:+78517779 | Msa1079390:CDS |
| GGAGAAAATGTCATTTCACC+GGG | 0.629782 | 7_2:+78520331 | Msa1079390:CDS |
| GAAGCTGATCCTTTGAATTG+GGG | 0.639983 | 7_2:+78517726 | Msa1079390:CDS |
| GAAAGGCAGTCACCTTGATG+AGG | 0.642522 | 7_2:+78517767 | Msa1079390:CDS |
| GGAGGAGTACCGGAAGCCGG+TGG | 0.645003 | 7_2:+78517803 | Msa1079390:CDS |
| GAATGTTTGGGAGAGTGGAA+CGG | 0.650182 | 7_2:+78520415 | Msa1079390:CDS |
| CCATACGCTTCACCTCATCA+AGG | 0.653785 | 7_2:-78517779 | None:intergenic |
| GTACCGCGAAGTGGTAAACA+TGG | 0.656453 | 7_2:-78518882 | None:intergenic |
| CACAAGTTGAAACACCACCC+TGG | 0.660975 | 7_2:+78519224 | Msa1079390:CDS |
| TGATGAGGTGAAGCGTATGG+TGG | 0.671300 | 7_2:+78517782 | Msa1079390:CDS |
| GCTGTGATTGTACCGCGAAG+TGG | 0.671902 | 7_2:-78518891 | None:intergenic |
| TCAGTGTCTCGCCACCAAGA+CGG | 0.673504 | 7_2:-78517827 | None:intergenic |
| GGAGAGTATGAACAAAGGCA+CGG | 0.688439 | 7_2:+78517953 | Msa1079390:CDS |
| AACGGCTGTTCCGTTAACAA+GGG | 0.688812 | 7_2:-78519078 | None:intergenic |
| CAGCCTCAATTTGACCAGGG+TGG | 0.690386 | 7_2:-78519238 | None:intergenic |
| ACAGCTCCACCTGCACACCA+TGG | 0.693221 | 7_2:-78517884 | None:intergenic |
| ACATGACCATGGTGTGCAGG+TGG | 0.694429 | 7_2:+78517878 | Msa1079390:CDS |
| CAGCAGCCTCAATTTGACCA+GGG | 0.707184 | 7_2:-78519241 | None:intergenic |
| GTGATGGAGAGTATGAACAA+AGG | 0.730510 | 7_2:+78517948 | Msa1079390:CDS |
| CACCGCCGTACCAAACAAGG+TGG | 0.735748 | 7_2:+78518014 | Msa1079390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAAAGTTTAAATCAA+AGG | - | chr7_2:78518178-78518197 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTTTTAACGAA+AGG | - | chr7_2:78518333-78518352 | None:intergenic | 10.0% |
| !! | TAATCAATACTATTAAGATA+TGG | + | chr7_2:78517614-78517633 | Msa1079390:exon | 15.0% |
| !!! | ATCTATTTGTAACTTTTAAT+TGG | + | chr7_2:78518379-78518398 | Msa1079390:intron | 15.0% |
| !!! | ACTTGTTTTTATATTAAAGT+AGG | - | chr7_2:78518440-78518459 | None:intergenic | 15.0% |
| !! | TACTTTAATATAAAAACAAG+TGG | + | chr7_2:78518439-78518458 | Msa1079390:intron | 15.0% |
| !! | ATATATGTATTAATAGTAAG+TGG | - | chr7_2:78518478-78518497 | None:intergenic | 15.0% |
| !!! | TTTACAAGTAACATTTTTTA+GGG | + | chr7_2:78518629-78518648 | Msa1079390:intron | 15.0% |
| !!! | GAAATTTGTAATTAACTTTT+AGG | + | chr7_2:78520582-78520601 | Msa1079390:three_prime_UTR | 15.0% |
| !! | TTCCATTCTTATAAAATTCT+AGG | + | chr7_2:78517563-78517582 | Msa1079390:five_prime_UTR | 20.0% |
| !!! | TACCTAGAATTTTATAAGAA+TGG | - | chr7_2:78517568-78517587 | None:intergenic | 20.0% |
| !!! | TGATTTTATATATGAAATGC+AGG | - | chr7_2:78518224-78518243 | None:intergenic | 20.0% |
| !!! | AAATTTTATCCTTATTTTGC+TGG | + | chr7_2:78518280-78518299 | Msa1079390:intron | 20.0% |
| !! | TTAATATAAAAACAAGTGGT+AGG | + | chr7_2:78518443-78518462 | Msa1079390:intron | 20.0% |
| !! | TAATATAAAAACAAGTGGTA+GGG | + | chr7_2:78518444-78518463 | Msa1079390:intron | 20.0% |
| !!! | GGTTACTTCTTTTAAAAAAT+TGG | + | chr7_2:78518602-78518621 | Msa1079390:intron | 20.0% |
| !!! | GTTTACAAGTAACATTTTTT+AGG | + | chr7_2:78518628-78518647 | Msa1079390:intron | 20.0% |
| !!! | TTACAAGTAACATTTTTTAG+GGG | + | chr7_2:78518630-78518649 | Msa1079390:intron | 20.0% |
| !! | TACCTTTAACTAATATGAAA+AGG | + | chr7_2:78520530-78520549 | Msa1079390:three_prime_UTR | 20.0% |
| !!! | AACCTTTTCATATTAGTTAA+AGG | - | chr7_2:78520535-78520554 | None:intergenic | 20.0% |
| ! | ATAGAGGTTTCTTTCTAATT+TGG | - | chr7_2:78517463-78517482 | None:intergenic | 25.0% |
| !! | AAAACTATTTGCAACGTTTT+TGG | + | chr7_2:78518353-78518372 | Msa1079390:intron | 25.0% |
| !!! | TGTACTTGCGTTTTAAATTT+AGG | + | chr7_2:78518497-78518516 | Msa1079390:intron | 25.0% |
| ! | AGAATACAGAAGAAAAGAAA+TGG | + | chr7_2:78518658-78518677 | Msa1079390:intron | 25.0% |
| !!! | TTTTTCAGATTTTTGAATGC+TGG | + | chr7_2:78518702-78518721 | Msa1079390:intron | 25.0% |
| !! | TTTTTGAATGCTGGAATATT+TGG | + | chr7_2:78518711-78518730 | Msa1079390:CDS | 25.0% |
| ! | TTTGAATTACAACCAAAAGA+AGG | + | chr7_2:78519050-78519069 | Msa1079390:CDS | 25.0% |
| ! | AAAAATAGCTGATAGAACTT+CGG | - | chr7_2:78519159-78519178 | None:intergenic | 25.0% |
| ! | TTCTTGAAACATCAATCAAA+GGG | - | chr7_2:78519463-78519482 | None:intergenic | 25.0% |
| ! | TTTCTTGAAACATCAATCAA+AGG | - | chr7_2:78519464-78519483 | None:intergenic | 25.0% |
| !! | GTCAATGATTTTTACAACAA+TGG | + | chr7_2:78519599-78519618 | Msa1079390:CDS | 25.0% |
| ! | ATATTGTAACTCAGAACAAT+AGG | - | chr7_2:78519702-78519721 | None:intergenic | 25.0% |
| ! | AATGTCTTAAATCAATTGCT+TGG | - | chr7_2:78519871-78519890 | None:intergenic | 25.0% |
| !! | AGCAATTGATTTAAGACATT+TGG | + | chr7_2:78519871-78519890 | Msa1079390:CDS | 25.0% |
| !! | AATTGATTTAAGACATTTGG+AGG | + | chr7_2:78519874-78519893 | Msa1079390:CDS | 25.0% |
| !! | TTCCTATTTGTTAACTTTGT+TGG | + | chr7_2:78520446-78520465 | Msa1079390:exon | 25.0% |
| ! | AACCAACAAAGTTAACAAAT+AGG | - | chr7_2:78520451-78520470 | None:intergenic | 25.0% |
| ! | CAAGTGTATCAATAATCATT+CGG | + | chr7_2:78520501-78520520 | Msa1079390:three_prime_UTR | 25.0% |
| ! | AGTAGTTAGGCTTTATATAG+AGG | - | chr7_2:78517479-78517498 | None:intergenic | 30.0% |
| !! | ATGTTCCTTTATTTGTTGTG+TGG | - | chr7_2:78517594-78517613 | None:intergenic | 30.0% |
| AATCAAGCAGAATGATTCAT+TGG | - | chr7_2:78517673-78517692 | None:intergenic | 30.0% | |
| ! | AAGAAAATGTGCAACTTGTT+AGG | + | chr7_2:78518581-78518600 | Msa1079390:intron | 30.0% |
| AATGCTGGAATATTTGGAAA+CGG | + | chr7_2:78518717-78518736 | Msa1079390:CDS | 30.0% | |
| ! | AGGAATTCGATTTGAAATCT+TGG | + | chr7_2:78518824-78518843 | Msa1079390:CDS | 30.0% |
| ! | TGCAAAAGAAGCTTTTACAT+TGG | + | chr7_2:78519007-78519026 | Msa1079390:CDS | 30.0% |
| ! | ATTTTTGCTGAAGTTATGCA+AGG | + | chr7_2:78519173-78519192 | Msa1079390:CDS | 30.0% |
| ! | TTTTTGCTGAAGTTATGCAA+GGG | + | chr7_2:78519174-78519193 | Msa1079390:CDS | 30.0% |
| ! | TGCTATTATGGAACACATTT+TGG | + | chr7_2:78519262-78519281 | Msa1079390:CDS | 30.0% |
| ! | ATTATGGAACACATTTTGGA+TGG | + | chr7_2:78519266-78519285 | Msa1079390:CDS | 30.0% |
| !! | AGTGCATATCTATCTTGTTT+TGG | - | chr7_2:78519347-78519366 | None:intergenic | 30.0% |
| AATCGAATCACTTCAATCAA+AGG | - | chr7_2:78519395-78519414 | None:intergenic | 30.0% | |
| GTTACAATATCTTGCAAATC+CGG | + | chr7_2:78519712-78519731 | Msa1079390:CDS | 30.0% | |
| !! | CTTTTTCACAGAATCTTGAA+GGG | - | chr7_2:78519982-78520001 | None:intergenic | 30.0% |
| !! | TCTTTTTCACAGAATCTTGA+AGG | - | chr7_2:78519983-78520002 | None:intergenic | 30.0% |
| !! | TGAAAAAGACTTGTTGAAAG+TGG | + | chr7_2:78519994-78520013 | Msa1079390:CDS | 30.0% |
| !!! | TCAAAAGATTGCTACTTTTG+AGG | + | chr7_2:78520156-78520175 | Msa1079390:CDS | 30.0% |
| ! | AACTATTTTCAGCTATGTGT+CGG | + | chr7_2:78520368-78520387 | Msa1079390:CDS | 30.0% |
| CAAAGTTAACAAATAGGAAG+AGG | - | chr7_2:78520445-78520464 | None:intergenic | 30.0% | |
| GAGGTTTCTTTCTAATTTGG+AGG | - | chr7_2:78517460-78517479 | None:intergenic | 35.0% | |
| GATTTGTGAAGGAAGTAGTT+AGG | - | chr7_2:78517492-78517511 | None:intergenic | 35.0% | |
| AACTACTTCCTTCACAAATC+AGG | + | chr7_2:78517492-78517511 | Msa1079390:five_prime_UTR | 35.0% | |
| ! | GTGAATTTCCTGATTTGTGA+AGG | - | chr7_2:78517503-78517522 | None:intergenic | 35.0% |
| TACCACCACACAACAAATAA+AGG | + | chr7_2:78517586-78517605 | Msa1079390:five_prime_UTR | 35.0% | |
| !! | TTCCTTTATTTGTTGTGTGG+TGG | - | chr7_2:78517591-78517610 | None:intergenic | 35.0% |
| ATGAAGCTGATCCTTTGAAT+TGG | + | chr7_2:78517724-78517743 | Msa1079390:CDS | 35.0% | |
| TGAAGCTGATCCTTTGAATT+GGG | + | chr7_2:78517725-78517744 | Msa1079390:CDS | 35.0% | |
| CATAGCAATCCAGCAAAATA+AGG | - | chr7_2:78518292-78518311 | None:intergenic | 35.0% | |
| ATCGAATTCCTGAATAACCT+TGG | - | chr7_2:78518815-78518834 | None:intergenic | 35.0% | |
| GTTGTTAAGGAGATTTGTGA+TGG | - | chr7_2:78518853-78518872 | None:intergenic | 35.0% | |
| ! | ATGGAGTAACGTTGTTGTTA+AGG | - | chr7_2:78518866-78518885 | None:intergenic | 35.0% |
| AAACCAGCAATGTATGAAAG+AGG | - | chr7_2:78518933-78518952 | None:intergenic | 35.0% | |
| !! | TACATTGCTGGTTTACTAAC+CGG | + | chr7_2:78518939-78518958 | Msa1079390:CDS | 35.0% |
| GCATTAAGTATTTCTCCAGA+TGG | - | chr7_2:78518990-78519009 | None:intergenic | 35.0% | |
| ! | AAAGAAGCTTTTACATTGGC+TGG | + | chr7_2:78519011-78519030 | Msa1079390:CDS | 35.0% |
| GAGAACAATAGAAGCTAAAC+CGG | - | chr7_2:78519108-78519127 | None:intergenic | 35.0% | |
| GTCAAATGATCGGTAAATTC+AGG | - | chr7_2:78519203-78519222 | None:intergenic | 35.0% | |
| CAACTTGTGTGTCAAATGAT+CGG | - | chr7_2:78519213-78519232 | None:intergenic | 35.0% | |
| !!! | TCTTGTTTTGGTTTCTGCAA+AGG | - | chr7_2:78519335-78519354 | None:intergenic | 35.0% |
| TCAAGAAACAAAGCTTTGCA+TGG | + | chr7_2:78519476-78519495 | Msa1079390:CDS | 35.0% | |
| AACTTTCAAGGAACACCTAT+TGG | + | chr7_2:78519503-78519522 | Msa1079390:CDS | 35.0% | |
| TTATCCATGGATACTCCAAT+AGG | - | chr7_2:78519521-78519540 | None:intergenic | 35.0% | |
| ATCCATGGATAATACACGTT+TGG | + | chr7_2:78519529-78519548 | Msa1079390:CDS | 35.0% | |
| AGAAATCCTAGCTTGGATTA+TGG | + | chr7_2:78519647-78519666 | Msa1079390:CDS | 35.0% | |
| TTGAAACCATAATCCAAGCT+AGG | - | chr7_2:78519656-78519675 | None:intergenic | 35.0% | |
| TAGCTTGGATTATGGTTTCA+AGG | + | chr7_2:78519655-78519674 | Msa1079390:CDS | 35.0% | |
| AGCTTGGATTATGGTTTCAA+GGG | + | chr7_2:78519656-78519675 | Msa1079390:CDS | 35.0% | |
| AACCAAGATGTGAACTCTTT+GGG | + | chr7_2:78519767-78519786 | Msa1079390:CDS | 35.0% | |
| !! | CTTTTTGGCAACTTGACTTA+CGG | - | chr7_2:78519927-78519946 | None:intergenic | 35.0% |
| !! | TGCCTTAGTTTTTGACTCAA+CGG | - | chr7_2:78520073-78520092 | None:intergenic | 35.0% |
| TCAAAAACTAAGGCAAGTGT+TGG | + | chr7_2:78520078-78520097 | Msa1079390:CDS | 35.0% | |
| GTAGATCATGCACTAGTTAA+TGG | + | chr7_2:78520100-78520119 | Msa1079390:CDS | 35.0% | |
| ! | TGATCTTGTTTGGGATTGTT+GGG | - | chr7_2:78520246-78520265 | None:intergenic | 35.0% |
| ! | TTGATCTTGTTTGGGATTGT+TGG | - | chr7_2:78520247-78520266 | None:intergenic | 35.0% |
| ACAATCCCAAACAAGATCAA+TGG | + | chr7_2:78520247-78520266 | Msa1079390:CDS | 35.0% | |
| ! | TGCATCCATTGATCTTGTTT+GGG | - | chr7_2:78520255-78520274 | None:intergenic | 35.0% |
| TCTCTCACAAACTTGTAAAG+TGG | - | chr7_2:78520286-78520305 | None:intergenic | 35.0% | |
| ACTTTACAAGTTTGTGAGAG+AGG | + | chr7_2:78520285-78520304 | Msa1079390:CDS | 35.0% | |
| ! | ACTATTTTCAGCTATGTGTC+GGG | + | chr7_2:78520369-78520388 | Msa1079390:CDS | 35.0% |
| GATCCTCTTCTTGAATGTTT+GGG | + | chr7_2:78520403-78520422 | Msa1079390:CDS | 35.0% | |
| GAAGCTGATCCTTTGAATTG+GGG | + | chr7_2:78517726-78517745 | Msa1079390:CDS | 40.0% | |
| ! | GTGATGGAGAGTATGAACAA+AGG | + | chr7_2:78517948-78517967 | Msa1079390:CDS | 40.0% |
| CTTTGCAGAAAGAACTCATC+AGG | + | chr7_2:78518039-78518058 | Msa1079390:CDS | 40.0% | |
| GAATTCCTGAATAACCTTGG+AGG | - | chr7_2:78518812-78518831 | None:intergenic | 40.0% | |
| GTTCCTCTTTCATACATTGC+TGG | + | chr7_2:78518927-78518946 | Msa1079390:CDS | 40.0% | |
| !! | AGCTTTGGAATTTGGTCTTC+CGG | - | chr7_2:78518961-78518980 | None:intergenic | 40.0% |
| AGACCAAATTCCAAAGCTCA+TGG | + | chr7_2:78518963-78518982 | Msa1079390:CDS | 40.0% | |
| AGCTTCTATTGTTCTCTTCG+AGG | + | chr7_2:78519112-78519131 | Msa1079390:CDS | 40.0% | |
| ! | TCTCTTCGAGGCTAACATTT+TGG | + | chr7_2:78519124-78519143 | Msa1079390:CDS | 40.0% |
| AATTGAGGCTGCTGCTATTA+TGG | + | chr7_2:78519250-78519269 | Msa1079390:CDS | 40.0% | |
| CACTTAGAACTTCACCACAA+TGG | + | chr7_2:78519363-78519382 | Msa1079390:CDS | 40.0% | |
| GATCTCTCTCTCAATTGACT+TGG | - | chr7_2:78519423-78519442 | None:intergenic | 40.0% | |
| AGAAACAAAGCTTTGCATGG+TGG | + | chr7_2:78519479-78519498 | Msa1079390:CDS | 40.0% | |
| ! | TTGCATGGTGGAAACTTTCA+AGG | + | chr7_2:78519491-78519510 | Msa1079390:CDS | 40.0% |
| ! | AACACCTATTGGAGTATCCA+TGG | + | chr7_2:78519514-78519533 | Msa1079390:CDS | 40.0% |
| AGCCAAACGTGTATTATCCA+TGG | - | chr7_2:78519534-78519553 | None:intergenic | 40.0% | |
| CTACTCGCAGAAAGATTTGA+AGG | - | chr7_2:78519629-78519648 | None:intergenic | 40.0% | |
| CAACCAAGATGTGAACTCTT+TGG | + | chr7_2:78519766-78519785 | Msa1079390:CDS | 40.0% | |
| AACCCAAAGAGTTCACATCT+TGG | - | chr7_2:78519772-78519791 | None:intergenic | 40.0% | |
| TTGGCATAGTGCAATCAAGA+AGG | - | chr7_2:78519852-78519871 | None:intergenic | 40.0% | |
| TGCCAAAAAGACTCTTACCA+TGG | + | chr7_2:78519937-78519956 | Msa1079390:CDS | 40.0% | |
| GCCAAAAAGACTCTTACCAT+GGG | + | chr7_2:78519938-78519957 | Msa1079390:CDS | 40.0% | |
| ! | ACCCATGGTAAGAGTCTTTT+TGG | - | chr7_2:78519942-78519961 | None:intergenic | 40.0% |
| ! | ACTTGTTGAAAGTGGTTGAC+AGG | + | chr7_2:78520002-78520021 | Msa1079390:CDS | 40.0% |
| CTTGTTGAAAGTGGTTGACA+GGG | + | chr7_2:78520003-78520022 | Msa1079390:CDS | 40.0% | |
| ACCCGTTGAGTCAAAAACTA+AGG | + | chr7_2:78520068-78520087 | Msa1079390:CDS | 40.0% | |
| !! | GCCTTAGTTTTTGACTCAAC+GGG | - | chr7_2:78520072-78520091 | None:intergenic | 40.0% |
| ! | TTCAACCTCTTTTGGCAAGA+GGG | - | chr7_2:78520194-78520213 | None:intergenic | 40.0% |
| ! | TTTCAACCTCTTTTGGCAAG+AGG | - | chr7_2:78520195-78520214 | None:intergenic | 40.0% |
| ! | CTTGCACTTTCAACCTCTTT+TGG | - | chr7_2:78520202-78520221 | None:intergenic | 40.0% |
| ! | CAAAAGAGGTTGAAAGTGCA+AGG | + | chr7_2:78520200-78520219 | Msa1079390:CDS | 40.0% |
| CTGCATCCATTGATCTTGTT+TGG | - | chr7_2:78520256-78520275 | None:intergenic | 40.0% | |
| ! | CTAGGAACTGGTTTACTAAC+CGG | + | chr7_2:78520310-78520329 | Msa1079390:CDS | 40.0% |
| ! | CGGTGAAATGACATTTTCTC+CGG | - | chr7_2:78520332-78520351 | None:intergenic | 40.0% |
| ! | CGGAGAAAATGTCATTTCAC+CGG | + | chr7_2:78520330-78520349 | Msa1079390:CDS | 40.0% |
| ! | GGAGAAAATGTCATTTCACC+GGG | + | chr7_2:78520331-78520350 | Msa1079390:CDS | 40.0% |
| ! | CTATTTTCAGCTATGTGTCG+GGG | + | chr7_2:78520370-78520389 | Msa1079390:CDS | 40.0% |
| CGATCCTCTTCTTGAATGTT+TGG | + | chr7_2:78520402-78520421 | Msa1079390:CDS | 40.0% | |
| TCTCCCAAACATTCAAGAAG+AGG | - | chr7_2:78520409-78520428 | None:intergenic | 40.0% | |
| TTCTTGAATGTTTGGGAGAG+TGG | + | chr7_2:78520410-78520429 | Msa1079390:CDS | 40.0% | |
| TGATCCTTTGAATTGGGGTG+TGG | + | chr7_2:78517731-78517750 | Msa1079390:CDS | 45.0% | |
| ATCTGCTAGGGATGGAGTTA+AGG | + | chr7_2:78517911-78517930 | Msa1079390:CDS | 45.0% | |
| ! | GGAGAGTATGAACAAAGGCA+CGG | + | chr7_2:78517953-78517972 | Msa1079390:CDS | 45.0% |
| ! | AACAAAGGCACGGACAGTTA+CGG | + | chr7_2:78517963-78517982 | Msa1079390:CDS | 45.0% |
| ! | AAGCACCACCTTGTTTGGTA+CGG | - | chr7_2:78518022-78518041 | None:intergenic | 45.0% |
| TCCTGAATAACCTTGGAGGA+GGG | - | chr7_2:78518808-78518827 | None:intergenic | 45.0% | |
| TTCCTGAATAACCTTGGAGG+AGG | - | chr7_2:78518809-78518828 | None:intergenic | 45.0% | |
| ACTCCATGTTTACCACTTCG+CGG | + | chr7_2:78518879-78518898 | Msa1079390:CDS | 45.0% | |
| !! | GGTCCATGAGCTTTGGAATT+TGG | - | chr7_2:78518969-78518988 | None:intergenic | 45.0% |
| AACGGCTGTTCCGTTAACAA+GGG | - | chr7_2:78519081-78519100 | None:intergenic | 45.0% | |
| AGAAGCTAAACCGGAACCAA+CGG | - | chr7_2:78519099-78519118 | None:intergenic | 45.0% | |
| AGAACTTCACCACAATGGCT+TGG | + | chr7_2:78519368-78519387 | Msa1079390:CDS | 45.0% | |
| ATCAAAGGACCAAGCCATTG+TGG | - | chr7_2:78519380-78519399 | None:intergenic | 45.0% | |
| TGCGAGTAGAAATCCTAGCT+TGG | + | chr7_2:78519640-78519659 | Msa1079390:CDS | 45.0% | |
| ! | CAAGGGATCTGAAATTGCCA+TGG | + | chr7_2:78519673-78519692 | Msa1079390:CDS | 45.0% |
| CTCAGAACAATAGGAAGCCA+TGG | - | chr7_2:78519693-78519712 | None:intergenic | 45.0% | |
| ! | CTCTGAACATGGGTTGTAAC+CGG | - | chr7_2:78519734-78519753 | None:intergenic | 45.0% |
| TTGCTCAGCACTCTGAACAT+GGG | - | chr7_2:78519744-78519763 | None:intergenic | 45.0% | |
| CATGAGCTGAAGGATCTCAA+TGG | - | chr7_2:78519822-78519841 | None:intergenic | 45.0% | |
| GCATAGTGCAATCAAGAAGG+TGG | - | chr7_2:78519849-78519868 | None:intergenic | 45.0% | |
| ACTCTTACCATGGGTGTCAA+TGG | + | chr7_2:78519947-78519966 | Msa1079390:CDS | 45.0% | |
| AAGTTCTCCATTGACACCCA+TGG | - | chr7_2:78519957-78519976 | None:intergenic | 45.0% | |
| TGGGTTTCCACTCTCATATG+CGG | - | chr7_2:78520227-78520246 | None:intergenic | 45.0% | |
| AAGTTTGTGAGAGAGGAGCT+AGG | + | chr7_2:78520292-78520311 | Msa1079390:CDS | 45.0% | |
| ! | AAATGTCATTTCACCGGGTG+AGG | + | chr7_2:78520336-78520355 | Msa1079390:CDS | 45.0% |
| GAATGTTTGGGAGAGTGGAA+CGG | + | chr7_2:78520415-78520434 | Msa1079390:CDS | 45.0% | |
| GAAAGGCAGTCACCTTGATG+AGG | + | chr7_2:78517767-78517786 | Msa1079390:CDS | 50.0% | |
| CCATACGCTTCACCTCATCA+AGG | - | chr7_2:78517782-78517801 | None:intergenic | 50.0% | |
| CCTTGATGAGGTGAAGCGTA+TGG | + | chr7_2:78517779-78517798 | Msa1079390:CDS | 50.0% | |
| TGATGAGGTGAAGCGTATGG+TGG | + | chr7_2:78517782-78517801 | Msa1079390:CDS | 50.0% | |
| CGAGACACTGACGATTTCTC+AGG | + | chr7_2:78517839-78517858 | Msa1079390:CDS | 50.0% | |
| GACACTGACGATTTCTCAGG+TGG | + | chr7_2:78517842-78517861 | Msa1079390:CDS | 50.0% | |
| ACCATGGTCATGTGCAGCAA+TGG | - | chr7_2:78517871-78517890 | None:intergenic | 50.0% | |
| TGGAGCTGTCTGAATCTGCT+AGG | + | chr7_2:78517898-78517917 | Msa1079390:CDS | 50.0% | |
| GGAGCTGTCTGAATCTGCTA+GGG | + | chr7_2:78517899-78517918 | Msa1079390:CDS | 50.0% | |
| CTGTCTGAATCTGCTAGGGA+TGG | + | chr7_2:78517903-78517922 | Msa1079390:CDS | 50.0% | |
| AGTTAAGGCCAGCAGTGACT+GGG | + | chr7_2:78517926-78517945 | Msa1079390:CDS | 50.0% | |
| ! | CTGCAAAGCACCACCTTGTT+TGG | - | chr7_2:78518027-78518046 | None:intergenic | 50.0% |
| ! | TTGCTGTGTGTGGAAGTGTG+TGG | - | chr7_2:78518755-78518774 | None:intergenic | 50.0% |
| AGAATCAACACCCTCCTCCA+AGG | + | chr7_2:78518795-78518814 | Msa1079390:CDS | 50.0% | |
| ACCCTCCTCCAAGGTTATTC+AGG | + | chr7_2:78518804-78518823 | Msa1079390:CDS | 50.0% | |
| GTACCGCGAAGTGGTAAACA+TGG | - | chr7_2:78518885-78518904 | None:intergenic | 50.0% | |
| TCCAAAGCTCATGGACCATC+TGG | + | chr7_2:78518972-78518991 | Msa1079390:CDS | 50.0% | |
| TCCAGATGGTCCATGAGCTT+TGG | - | chr7_2:78518976-78518995 | None:intergenic | 50.0% | |
| ! | ACAAGGGCAAGGCCTTCTTT+TGG | - | chr7_2:78519065-78519084 | None:intergenic | 50.0% |
| GAAGGCCTTGCCCTTGTTAA+CGG | + | chr7_2:78519068-78519087 | Msa1079390:CDS | 50.0% | |
| CTGTTCCGTTAACAAGGGCA+AGG | - | chr7_2:78519076-78519095 | None:intergenic | 50.0% | |
| CAACGGCTGTTCCGTTAACA+AGG | - | chr7_2:78519082-78519101 | None:intergenic | 50.0% | |
| CTTGTTAACGGAACAGCCGT+TGG | + | chr7_2:78519080-78519099 | Msa1079390:CDS | 50.0% | |
| ! | CACAAGTTGAAACACCACCC+TGG | + | chr7_2:78519224-78519243 | Msa1079390:CDS | 50.0% |
| ACACCACCCTGGTCAAATTG+AGG | + | chr7_2:78519235-78519254 | Msa1079390:CDS | 50.0% | |
| CAGCAGCCTCAATTTGACCA+GGG | - | chr7_2:78519244-78519263 | None:intergenic | 50.0% | |
| !! | CGTTTGGCTCTCGCATCAAT+TGG | + | chr7_2:78519545-78519564 | Msa1079390:CDS | 50.0% |
| GTTGCTCAGCACTCTGAACA+TGG | - | chr7_2:78519745-78519764 | None:intergenic | 50.0% | |
| AGGTGGAAGACATGAGCTGA+AGG | - | chr7_2:78519832-78519851 | None:intergenic | 50.0% | |
| AACGGGTATGTAGCGCTACA+AGG | - | chr7_2:78520055-78520074 | None:intergenic | 50.0% | |
| GAAGACCCTCTTGCCAAAAG+AGG | + | chr7_2:78520186-78520205 | Msa1079390:CDS | 50.0% | |
| AGTTTGTCACACTCCTCACC+CGG | - | chr7_2:78520352-78520371 | None:intergenic | 50.0% | |
| GCTGCCACACCCCAATTCAA+AGG | - | chr7_2:78517738-78517757 | None:intergenic | 55.0% | |
| GTGGCAGCTGAGGCAATGAA+AGG | + | chr7_2:78517750-78517769 | Msa1079390:CDS | 55.0% | |
| TGAGGTGAAGCGTATGGTGG+AGG | + | chr7_2:78517785-78517804 | Msa1079390:CDS | 55.0% | |
| ! | AGCGTATGGTGGAGGAGTAC+CGG | + | chr7_2:78517793-78517812 | Msa1079390:CDS | 55.0% |
| TCAGTGTCTCGCCACCAAGA+CGG | - | chr7_2:78517830-78517849 | None:intergenic | 55.0% | |
| GCCATTGCTGCACATGACCA+TGG | + | chr7_2:78517867-78517886 | Msa1079390:CDS | 55.0% | |
| TGCACATGACCATGGTGTGC+AGG | + | chr7_2:78517875-78517894 | Msa1079390:CDS | 55.0% | |
| ACATGACCATGGTGTGCAGG+TGG | + | chr7_2:78517878-78517897 | Msa1079390:CDS | 55.0% | |
| GAGTTAAGGCCAGCAGTGAC+TGG | + | chr7_2:78517925-78517944 | Msa1079390:CDS | 55.0% | |
| !! | GACAGTTACGGTGTCACCAC+CGG | + | chr7_2:78517975-78517994 | Msa1079390:CDS | 55.0% |
| !! | ACAGTTACGGTGTCACCACC+GGG | + | chr7_2:78517976-78517995 | Msa1079390:CDS | 55.0% |
| ! | CACCACCTTGTTTGGTACGG+CGG | - | chr7_2:78518019-78518038 | None:intergenic | 55.0% |
| GCAGCTCTTGTTGCTGTGTG+TGG | - | chr7_2:78518765-78518784 | None:intergenic | 55.0% | |
| GCTGTGATTGTACCGCGAAG+TGG | - | chr7_2:78518894-78518913 | None:intergenic | 55.0% | |
| CGCGGTACAATCACAGCTTC+AGG | + | chr7_2:78518897-78518916 | Msa1079390:CDS | 55.0% | |
| !! | AACGGAACAGCCGTTGGTTC+CGG | + | chr7_2:78519086-78519105 | Msa1079390:CDS | 55.0% |
| CAGCCTCAATTTGACCAGGG+TGG | - | chr7_2:78519241-78519260 | None:intergenic | 55.0% | |
| GCAGCAGCCTCAATTTGACC+AGG | - | chr7_2:78519245-78519264 | None:intergenic | 55.0% | |
| GCAAGGACCGCATATGAGAG+TGG | + | chr7_2:78520217-78520236 | Msa1079390:CDS | 55.0% | |
| GTGAGAGAGGAGCTAGGAAC+TGG | + | chr7_2:78520298-78520317 | Msa1079390:CDS | 55.0% | |
| GAATTGGGGTGTGGCAGCTG+AGG | + | chr7_2:78517740-78517759 | Msa1079390:CDS | 60.0% | |
| ACAGCTCCACCTGCACACCA+TGG | - | chr7_2:78517887-78517906 | None:intergenic | 60.0% | |
| CTCCATCACCCAGTCACTGC+TGG | - | chr7_2:78517937-78517956 | None:intergenic | 60.0% | |
| !! | TACGGTGTCACCACCGGGTT+CGG | + | chr7_2:78517981-78518000 | Msa1079390:CDS | 60.0% |
| TTGTTTGGTACGGCGGTGCG+AGG | - | chr7_2:78518012-78518031 | None:intergenic | 60.0% | |
| TCGCACCGCCGTACCAAACA+AGG | + | chr7_2:78518011-78518030 | Msa1079390:CDS | 60.0% | |
| CACCGCCGTACCAAACAAGG+TGG | + | chr7_2:78518014-78518033 | Msa1079390:CDS | 60.0% | |
| !! | GGTGGAGGAGTACCGGAAGC+CGG | + | chr7_2:78517800-78517819 | Msa1079390:CDS | 65.0% |
| !! | CAAGACGGACCACCGGCTTC+CGG | - | chr7_2:78517815-78517834 | None:intergenic | 65.0% |
| AAGCCGGTGGTCCGTCTTGG+TGG | + | chr7_2:78517816-78517835 | Msa1079390:CDS | 65.0% | |
| TCGCCACCAAGACGGACCAC+CGG | - | chr7_2:78517822-78517841 | None:intergenic | 65.0% | |
| GGCCAGCAGTGACTGGGTGA+TGG | + | chr7_2:78517932-78517951 | Msa1079390:CDS | 65.0% | |
| TTTGGTACGGCGGTGCGAGG+TGG | - | chr7_2:78518009-78518028 | None:intergenic | 65.0% | |
| !! | GGAGGAGTACCGGAAGCCGG+TGG | + | chr7_2:78517803-78517822 | Msa1079390:CDS | 70.0% |
| CGGAAGCCGGTGGTCCGTCT+TGG | + | chr7_2:78517813-78517832 | Msa1079390:CDS | 70.0% | |
| ! | GTGCGAGGTGGCGCCGAACC+CGG | - | chr7_2:78517997-78518016 | None:intergenic | 75.0% |
| !! | CGAGGTGGCGCCGAACCCGG+TGG | - | chr7_2:78517994-78518013 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 78517418 | 78520622 | 78517418 | ID=Msa1079390;Name=Msa1079390 |
| chr7_2 | mRNA | 78517418 | 78520622 | 78517418 | ID=Msa1079390-mRNA-1;Parent=Msa1079390;Name=Msa1079390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=215|1|1|1|1|1|2|163|725 |
| chr7_2 | exon | 78517418 | 78518060 | 78517418 | ID=Msa1079390-mRNA-1:exon:19552;Parent=Msa1079390-mRNA-1 |
| chr7_2 | exon | 78518710 | 78520622 | 78518710 | ID=Msa1079390-mRNA-1:exon:19553;Parent=Msa1079390-mRNA-1 |
| chr7_2 | five_prime_UTR | 78517418 | 78517632 | 78517418 | ID=Msa1079390-mRNA-1:five_prime_utr;Parent=Msa1079390-mRNA-1 |
| chr7_2 | CDS | 78517633 | 78518060 | 78517633 | ID=Msa1079390-mRNA-1:cds;Parent=Msa1079390-mRNA-1 |
| chr7_2 | CDS | 78518710 | 78520459 | 78518710 | ID=Msa1079390-mRNA-1:cds;Parent=Msa1079390-mRNA-1 |
| chr7_2 | three_prime_UTR | 78520460 | 78520622 | 78520460 | ID=Msa1079390-mRNA-1:three_prime_utr;Parent=Msa1079390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
