Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259870 | GAU49407.1 | 43.112 | 392 | 194 | 8 | 116 | 490 | 9 | 388 | 3.18e-83 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259870 | A0A2Z6PS77 | 43.112 | 392 | 194 | 8 | 116 | 490 | 9 | 388 | 1.52e-83 | 280 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0259870 | Msa0887810 | 0.800645 | 1.307729e-48 | -8.615850e-47 |
| Msa0259870 | Msa0917830 | 0.850578 | 1.550840e-60 | -8.615850e-47 |
| Msa0259870 | Msa0956020 | 0.884954 | 1.232444e-71 | -8.615850e-47 |
| Msa0259870 | Msa1109230 | 0.906688 | 1.135761e-80 | -8.615850e-47 |
| Msa0259870 | Msa1248720 | 0.903819 | 2.337024e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259870 | MtrunA17_Chr4g0039731 | 43.583 | 374 | 165 | 8 | 158 | 492 | 161 | 527 | 6.07e-74 | 249 |
| Msa0259870 | MtrunA17_Chr3g0086081 | 32.189 | 233 | 132 | 4 | 178 | 395 | 4 | 225 | 8.76e-28 | 114 |
| Msa0259870 | MtrunA17_Chr8g0345501 | 25.902 | 305 | 197 | 9 | 167 | 444 | 413 | 715 | 1.22e-22 | 101 |
| Msa0259870 | MtrunA17_Chr4g0010341 | 35.664 | 143 | 81 | 2 | 159 | 290 | 181 | 323 | 3.62e-22 | 99.4 |
| Msa0259870 | MtrunA17_Chr1g0168171 | 57.692 | 78 | 29 | 2 | 228 | 301 | 1 | 78 | 2.50e-20 | 85.5 |
| Msa0259870 | MtrunA17_Chr4g0025081 | 30.315 | 254 | 150 | 10 | 165 | 393 | 231 | 482 | 3.47e-20 | 93.6 |
| Msa0259870 | MtrunA17_Chr1g0176161 | 26.911 | 327 | 209 | 12 | 165 | 463 | 158 | 482 | 1.73e-19 | 91.3 |
| Msa0259870 | MtrunA17_Chr1g0179631 | 22.973 | 370 | 243 | 11 | 123 | 461 | 476 | 834 | 7.10e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 161 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATAATAGCATCTTTCTT+AGG | 0.145906 | 2_2:-57258514 | None:intergenic |
| TGGCTATTAGGCGTCAATTT+AGG | 0.150991 | 2_2:+57258692 | Msa0259870:CDS |
| GGACCACAGTTGATGTCTTT+TGG | 0.233233 | 2_2:-57258237 | None:intergenic |
| ATTGGTGATGTGTTATGTTT+TGG | 0.241401 | 2_2:+57260401 | Msa0259870:three_prime_UTR |
| ACACAATTGTGAAGTTCTTA+TGG | 0.250119 | 2_2:+57260354 | Msa0259870:three_prime_UTR |
| GAGAGAAACGACTTCAATTA+TGG | 0.254171 | 2_2:+57259921 | Msa0259870:CDS |
| GGTTGGACATCTAGTTCTTT+AGG | 0.256896 | 2_2:-57258304 | None:intergenic |
| TGGACGGCTGGTCGGGGAAG+TGG | 0.260132 | 2_2:-57258280 | None:intergenic |
| ATAACCTGTGTCACTAGTTT+TGG | 0.298958 | 2_2:-57260496 | None:intergenic |
| GGCTATTAGGCGTCAATTTA+GGG | 0.299701 | 2_2:+57258693 | Msa0259870:CDS |
| CTCAATATGATGCGGAAATC+AGG | 0.302840 | 2_2:+57258904 | Msa0259870:CDS |
| CCATCCTGATGAACTCTTCT+TGG | 0.306942 | 2_2:+57259274 | Msa0259870:CDS |
| TTTAGGTTGGACGGCTGGTC+GGG | 0.310466 | 2_2:-57258287 | None:intergenic |
| GCATCCTCTCCCATCCATTT+AGG | 0.314255 | 2_2:-57258999 | None:intergenic |
| AGTAGGTTGGACGGCTGGTC+GGG | 0.317922 | 2_2:-57258350 | None:intergenic |
| CTTCACAAAACAAGACTAAT+CGG | 0.320914 | 2_2:+57259072 | Msa0259870:CDS |
| CGAGGTAATTGTTATGGTAC+TGG | 0.324310 | 2_2:+57259968 | Msa0259870:CDS |
| ATGCTGGTCTTCTCGAATAT+TGG | 0.325418 | 2_2:+57259024 | Msa0259870:CDS |
| GATCAGCTTCAGCAGCTCTT+TGG | 0.342233 | 2_2:-57260120 | None:intergenic |
| ACCACTGGTGCTGGTGGGTC+AGG | 0.342578 | 2_2:-57258388 | None:intergenic |
| ATAAAATACCCTTGACCAAT+TGG | 0.342640 | 2_2:-57258550 | None:intergenic |
| TTTAATTTCTACTAATTGTA+TGG | 0.351738 | 2_2:+57260437 | Msa0259870:three_prime_UTR |
| AAAAGGTTCCTCAAGATCTA+TGG | 0.354768 | 2_2:+57258734 | Msa0259870:CDS |
| CTACTGCTATGGAAGAATTC+AGG | 0.367453 | 2_2:+57260173 | Msa0259870:CDS |
| ATGCAATGAGGATGGCTATT+AGG | 0.367943 | 2_2:+57258680 | Msa0259870:CDS |
| GTTGGTGAGGTGGGCTCAAC+TGG | 0.370950 | 2_2:-57258211 | None:intergenic |
| TTATAATAGCATCTTTCTTA+GGG | 0.373281 | 2_2:-57258513 | None:intergenic |
| GTTGGCTACAACAAGTTTCC+TGG | 0.374689 | 2_2:-57258155 | None:intergenic |
| GCATGTCAGTAAGGCGCTTT+GGG | 0.375371 | 2_2:-57258947 | None:intergenic |
| TTGTCTCGAGGTAATTGTTA+TGG | 0.375766 | 2_2:+57259962 | Msa0259870:CDS |
| GGTCGGGGAGGTTGGATGGC+TGG | 0.377425 | 2_2:-57258334 | None:intergenic |
| CAATTATGGGTAGATGTTGC+TGG | 0.379900 | 2_2:+57259935 | Msa0259870:CDS |
| GGGAAGTGGGATGGCTGGTC+GGG | 0.380978 | 2_2:-57258266 | None:intergenic |
| GGTTGGATGGCTGGTCGGGC+AGG | 0.388938 | 2_2:-57258325 | None:intergenic |
| GGGAGGTTGGATGGCTGGTC+GGG | 0.392962 | 2_2:-57258329 | None:intergenic |
| AGCATGTCAGTAAGGCGCTT+TGG | 0.396055 | 2_2:-57258948 | None:intergenic |
| GGACGGCTGGTCGGGGAGGT+TGG | 0.399368 | 2_2:-57258342 | None:intergenic |
| AATTATGGGTAGATGTTGCT+GGG | 0.404667 | 2_2:+57259936 | Msa0259870:CDS |
| AACAAGACTAATCGGGGTTC+GGG | 0.408769 | 2_2:+57259080 | Msa0259870:CDS |
| TCACCATGTTCTCTTTCAAT+TGG | 0.408880 | 2_2:+57260383 | Msa0259870:three_prime_UTR |
| TAGTGACACAGGTTATGTTT+TGG | 0.410283 | 2_2:+57260503 | Msa0259870:three_prime_UTR |
| GGTCGGGGAAGTGGGATGGC+TGG | 0.414065 | 2_2:-57258271 | None:intergenic |
| AGTGGGATGGCTGGTCGGGC+AGG | 0.414174 | 2_2:-57258262 | None:intergenic |
| GACTGACAGTGTAAAATACT+TGG | 0.426930 | 2_2:+57259242 | Msa0259870:intron |
| ACTAATCGGGGTTCGGGTAA+AGG | 0.427835 | 2_2:+57259086 | Msa0259870:CDS |
| TGATCATCTGCAAGGTGTGC+AGG | 0.431034 | 2_2:+57258462 | Msa0259870:CDS |
| TCTGACAGGAATATGTTTCA+TGG | 0.431668 | 2_2:+57258877 | Msa0259870:intron |
| CAATCTTCGTTAGTTGAGTC+AGG | 0.432364 | 2_2:-57259862 | None:intergenic |
| TTCACAAAACAAGACTAATC+GGG | 0.432488 | 2_2:+57259073 | Msa0259870:CDS |
| AAACAAGACTAATCGGGGTT+CGG | 0.436178 | 2_2:+57259079 | Msa0259870:CDS |
| CTTTAGGTTGGACGGCTGGT+CGG | 0.440694 | 2_2:-57258288 | None:intergenic |
| GGACGGCTGGTCGGGGAAGT+GGG | 0.440695 | 2_2:-57258279 | None:intergenic |
| GGGGAGGTTGGATGGCTGGT+CGG | 0.446752 | 2_2:-57258330 | None:intergenic |
| GGGGAAGTGGGATGGCTGGT+CGG | 0.448275 | 2_2:-57258267 | None:intergenic |
| AAGATTGATGAGAATTCTAA+TGG | 0.450583 | 2_2:+57259878 | Msa0259870:CDS |
| GGATGGCTGGTCGGGCAGGT+TGG | 0.452958 | 2_2:-57258258 | None:intergenic |
| TTTCTTAGGGGCCTCTTGCT+CGG | 0.456169 | 2_2:-57258500 | None:intergenic |
| GGCTGCAGCAGCACGTGCTG+AGG | 0.459336 | 2_2:+57260084 | Msa0259870:CDS |
| GGATGGCTGGTCGGGCAGGT+TGG | 0.462997 | 2_2:-57258321 | None:intergenic |
| GGCTGGTCGGGGAGGTTGGA+TGG | 0.466137 | 2_2:-57258338 | None:intergenic |
| TAAGAGGAAGTCTGGCGATT+GGG | 0.469252 | 2_2:+57259304 | Msa0259870:CDS |
| AGAGAAACGACTTCAATTAT+GGG | 0.470876 | 2_2:+57259922 | Msa0259870:CDS |
| GGCTGGTCGGGGAAGTGGGA+TGG | 0.472110 | 2_2:-57258275 | None:intergenic |
| GTAGCCAAGAAGAGTTCATC+AGG | 0.473619 | 2_2:-57259278 | None:intergenic |
| AGTTCTTTAGGTTGGACGGC+TGG | 0.475146 | 2_2:-57258292 | None:intergenic |
| GGTGATTGAAATGTTTCGTC+AGG | 0.476769 | 2_2:+57260060 | Msa0259870:CDS |
| ATCTAGTTCTTTAGGTTGGA+CGG | 0.477088 | 2_2:-57258296 | None:intergenic |
| CAGTAGGTTGGACGGCTGGT+CGG | 0.477532 | 2_2:-57258351 | None:intergenic |
| TACCTTTGAACGAGCATTGG+TGG | 0.478671 | 2_2:-57258104 | None:intergenic |
| TAAAATACCCTTGACCAATT+GGG | 0.480390 | 2_2:-57258549 | None:intergenic |
| CTGGTGCTGGTGGGTCAGGT+TGG | 0.482169 | 2_2:-57258384 | None:intergenic |
| AGATTTACACCTAGCAAAGA+TGG | 0.482324 | 2_2:+57258652 | Msa0259870:intron |
| GAGGTAATTGTTATGGTACT+GGG | 0.483970 | 2_2:+57259969 | Msa0259870:CDS |
| TCTTCTTGGCTACTCGTAAG+AGG | 0.493331 | 2_2:+57259288 | Msa0259870:CDS |
| TAATACCTTTGAACGAGCAT+TGG | 0.494955 | 2_2:-57258107 | None:intergenic |
| GCTACTCGTAAGAGGAAGTC+TGG | 0.496029 | 2_2:+57259296 | Msa0259870:CDS |
| GTTGCTTTAGCAAGATATCC+AGG | 0.497813 | 2_2:-57258133 | None:intergenic |
| AAGACCATCATACGCCCAAT+TGG | 0.499185 | 2_2:+57258535 | Msa0259870:CDS |
| TCAAGGGAAGGTGGTGATGC+CGG | 0.499428 | 2_2:-57258433 | None:intergenic |
| GTAGGTTGGACGGCTGGTCG+GGG | 0.508095 | 2_2:-57258349 | None:intergenic |
| GGAAGCTTTAGAGAATCAAT+CGG | 0.509751 | 2_2:+57260204 | Msa0259870:CDS |
| GGACATCTAGTTCTTTAGGT+TGG | 0.514643 | 2_2:-57258300 | None:intergenic |
| GCATTAGCACCATCTTTGCT+AGG | 0.518356 | 2_2:-57258661 | None:intergenic |
| TTAGGTTGGACGGCTGGTCG+GGG | 0.518978 | 2_2:-57258286 | None:intergenic |
| GAATCAATTCTCTACTGCTA+TGG | 0.520159 | 2_2:+57260162 | Msa0259870:CDS |
| CTAAAACATCAACAAACATC+AGG | 0.525609 | 2_2:-57260317 | None:intergenic |
| TTGACCAATTGGGCGTATGA+TGG | 0.526388 | 2_2:-57258539 | None:intergenic |
| GAGGTGGGCTCAACTGGCCG+TGG | 0.535224 | 2_2:-57258205 | None:intergenic |
| ACCTGACCCACCAGCACCAG+TGG | 0.536903 | 2_2:+57258387 | Msa0259870:CDS |
| GCAGATGATCATCCTCCTCA+AGG | 0.541005 | 2_2:-57258450 | None:intergenic |
| AGAACAGTAGGTTGGACGGC+TGG | 0.541215 | 2_2:-57258355 | None:intergenic |
| AAGAGTTCATCAGGATGGAT+AGG | 0.544009 | 2_2:-57259269 | None:intergenic |
| CTGACAGGAATATGTTTCAT+GGG | 0.544185 | 2_2:+57258878 | Msa0259870:intron |
| GTAAGAGGAAGTCTGGCGAT+TGG | 0.544893 | 2_2:+57259303 | Msa0259870:CDS |
| CGTTCAAAGGTATTACAACC+TGG | 0.548147 | 2_2:+57258115 | Msa0259870:CDS |
| ATCATACGCCCAATTGGTCA+AGG | 0.549638 | 2_2:+57258541 | Msa0259870:CDS |
| TGTCCATACCACAGGTCGTA+AGG | 0.551241 | 2_2:+57259115 | Msa0259870:CDS |
| GGTAGGACCACTGGTGCTGG+TGG | 0.551590 | 2_2:-57258394 | None:intergenic |
| GTTTCAAACCATAGATCTTG+AGG | 0.552921 | 2_2:-57258742 | None:intergenic |
| AAACACACATACCGAGCAAG+AGG | 0.553474 | 2_2:+57258489 | Msa0259870:CDS |
| TCTGATTGATCATCAAGAGC+AGG | 0.560143 | 2_2:-57260283 | None:intergenic |
| TTCCACCAATGCTCGTTCAA+AGG | 0.564669 | 2_2:+57258102 | Msa0259870:CDS |
| TTAGAGAATCAATCGGGCGA+TGG | 0.571971 | 2_2:+57260211 | Msa0259870:CDS |
| GAGCCTTACGACCTGTGGTA+TGG | 0.575889 | 2_2:-57259118 | None:intergenic |
| ACTTGAGAAGGTAGGACCAC+TGG | 0.576985 | 2_2:-57258403 | None:intergenic |
| GGTTGGACGGCTGGTCGGGG+AGG | 0.577584 | 2_2:-57258346 | None:intergenic |
| ATCTAGAACAGTAGGTTGGA+CGG | 0.579045 | 2_2:-57258359 | None:intergenic |
| GGTTGGACATCTAGAACAGT+AGG | 0.579564 | 2_2:-57258367 | None:intergenic |
| CCAAGAAGAGTTCATCAGGA+TGG | 0.580522 | 2_2:-57259274 | None:intergenic |
| CCACGACGTGGCACTAGACA+TGG | 0.582481 | 2_2:+57259142 | Msa0259870:CDS |
| GAAGGTAGGACCACTGGTGC+TGG | 0.582738 | 2_2:-57258397 | None:intergenic |
| GGAAGAATTCAGGAAGCGCA+TGG | 0.584480 | 2_2:+57260183 | Msa0259870:CDS |
| GATCATCTGCAAGGTGTGCA+GGG | 0.585289 | 2_2:+57258463 | Msa0259870:CDS |
| GCCGGTGCAGTCACTTGAGA+AGG | 0.587439 | 2_2:-57258415 | None:intergenic |
| GATTGAAATGTTTCGTCAGG+AGG | 0.588208 | 2_2:+57260063 | Msa0259870:CDS |
| TAATGGTGATATGCAAGAGG+TGG | 0.590246 | 2_2:+57259895 | Msa0259870:CDS |
| TATAATAGCATCTTTCTTAG+GGG | 0.592529 | 2_2:-57258512 | None:intergenic |
| ATGGGAGAGGATGCATATGC+TGG | 0.593184 | 2_2:+57259008 | Msa0259870:CDS |
| GATTGGGTTGACAGTCGTGC+TGG | 0.597801 | 2_2:+57259320 | Msa0259870:CDS |
| TGCTCTTGATGATCAATCAG+AGG | 0.598343 | 2_2:+57260285 | Msa0259870:CDS |
| TTATCTTTCAACATTAGACC+AGG | 0.600042 | 2_2:+57259995 | Msa0259870:CDS |
| ATTATGGGTAGATGTTGCTG+GGG | 0.600229 | 2_2:+57259937 | Msa0259870:CDS |
| AATCGGGGTTCGGGTAAAGG+AGG | 0.600362 | 2_2:+57259089 | Msa0259870:CDS |
| AAGACCTAAATGGATGGGAG+AGG | 0.600614 | 2_2:+57258995 | Msa0259870:CDS |
| GATATCTTGCTAAAGCAACC+AGG | 0.601805 | 2_2:+57258137 | Msa0259870:CDS |
| GGAGGAGCTGTCCATACCAC+AGG | 0.602462 | 2_2:+57259107 | Msa0259870:CDS |
| GAAGCTTTAGAGAATCAATC+GGG | 0.602628 | 2_2:+57260205 | Msa0259870:CDS |
| CAGATGATCATCCTCCTCAA+GGG | 0.604430 | 2_2:-57258449 | None:intergenic |
| ACTGACAGTGTAAAATACTT+GGG | 0.608198 | 2_2:+57259243 | Msa0259870:intron |
| AAAATGACTAGACAATGTCA+TGG | 0.611773 | 2_2:+57258061 | Msa0259870:CDS |
| TTATGGGTAGATGTTGCTGG+GGG | 0.616713 | 2_2:+57259938 | Msa0259870:CDS |
| ATCACCACCTTCCCTTGAGG+AGG | 0.618148 | 2_2:+57258438 | Msa0259870:CDS |
| AATGGTGATATGCAAGAGGT+GGG | 0.621480 | 2_2:+57259896 | Msa0259870:CDS |
| GGGGAAAGACCTAAATGGAT+GGG | 0.621645 | 2_2:+57258990 | Msa0259870:CDS |
| TCACAAAACAAGACTAATCG+GGG | 0.623382 | 2_2:+57259074 | Msa0259870:CDS |
| TGAGTCAGATGACTTACACC+TGG | 0.624603 | 2_2:-57260013 | None:intergenic |
| ACCTTCTCAAGTGACTGCAC+CGG | 0.628487 | 2_2:+57258414 | Msa0259870:CDS |
| TTCTAATGGTGATATGCAAG+AGG | 0.631960 | 2_2:+57259892 | Msa0259870:CDS |
| TGATCATCCTCCTCAAGGGA+AGG | 0.632341 | 2_2:-57258445 | None:intergenic |
| TCATCCTCCTCAAGGGAAGG+TGG | 0.633047 | 2_2:-57258442 | None:intergenic |
| TTAACCAAAACTAGTGACAC+AGG | 0.635406 | 2_2:+57260492 | Msa0259870:three_prime_UTR |
| TCACCAATTGAAAGAGAACA+TGG | 0.636740 | 2_2:-57260386 | None:intergenic |
| GGCATCACCACCTTCCCTTG+AGG | 0.637498 | 2_2:+57258435 | Msa0259870:CDS |
| GGACATCTAGAACAGTAGGT+TGG | 0.640065 | 2_2:-57258363 | None:intergenic |
| GAGGAGGATGATCATCTGCA+AGG | 0.643850 | 2_2:+57258454 | Msa0259870:CDS |
| ATGTTGTCCTCCTGAAAATG+AGG | 0.644414 | 2_2:+57260039 | Msa0259870:CDS |
| GTGCAGTCACTTGAGAAGGT+AGG | 0.645618 | 2_2:-57258411 | None:intergenic |
| TCAAGAGCAGGATCATAATG+TGG | 0.646262 | 2_2:-57260271 | None:intergenic |
| GTAGGACCACTGGTGCTGGT+GGG | 0.647578 | 2_2:-57258393 | None:intergenic |
| TCATACGCCCAATTGGTCAA+GGG | 0.653662 | 2_2:+57258542 | Msa0259870:CDS |
| AGGTAATTGTTATGGTACTG+GGG | 0.660624 | 2_2:+57259970 | Msa0259870:CDS |
| TGGTGCTAATGCAATGAGGA+TGG | 0.662918 | 2_2:+57258672 | Msa0259870:CDS |
| ATGGGAGACTCAATATGATG+CGG | 0.663539 | 2_2:+57258896 | Msa0259870:CDS |
| ACATCAACAAACATCAGGTG+AGG | 0.663720 | 2_2:-57260312 | None:intergenic |
| GTGGTGAGCCTTACGACCTG+TGG | 0.668031 | 2_2:-57259123 | None:intergenic |
| GGTGATATGCAAGAGGTGGG+CGG | 0.675105 | 2_2:+57259899 | Msa0259870:CDS |
| CCATGTCTAGTGCCACGTCG+TGG | 0.693029 | 2_2:-57259142 | None:intergenic |
| AATTGAAAGAGAACATGGTG+AGG | 0.697328 | 2_2:-57260381 | None:intergenic |
| TCGTAAGGCTCACCACGACG+TGG | 0.712195 | 2_2:+57259130 | Msa0259870:CDS |
| AATCCAAAAGACATCAACTG+TGG | 0.734923 | 2_2:+57258234 | Msa0259870:CDS |
| AAGATGGTGCTAATGCAATG+AGG | 0.735156 | 2_2:+57258668 | Msa0259870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTGTTTATTGTT+TGG | + | chr2_2:57256993-57257012 | Msa0259870:intron | 10.0% |
| !!! | TATAATTTTAGAAAAACAAT+CGG | - | chr2_2:57257076-57257095 | None:intergenic | 10.0% |
| !! | TTTAATTATAATTTCAAACA+CGG | - | chr2_2:57257833-57257852 | None:intergenic | 10.0% |
| !! | TAATGATCAAAATACATATA+TGG | + | chr2_2:57259578-57259597 | Msa0259870:intron | 15.0% |
| !! | ATATGTGAACATATATAATT+TGG | + | chr2_2:57259688-57259707 | Msa0259870:intron | 15.0% |
| !!! | TTTAATTTCTACTAATTGTA+TGG | + | chr2_2:57260437-57260456 | Msa0259870:three_prime_UTR | 15.0% |
| !! | TTCTCGTTCATTTAATTAAA+AGG | + | chr2_2:57257191-57257210 | Msa0259870:intron | 20.0% |
| !! | TCTCGTTCATTTAATTAAAA+GGG | + | chr2_2:57257192-57257211 | Msa0259870:intron | 20.0% |
| !!! | TTGATATTTTTGTTTGTGTT+TGG | + | chr2_2:57257698-57257717 | Msa0259870:intron | 20.0% |
| !! | TTATAATAGCATCTTTCTTA+GGG | - | chr2_2:57258516-57258535 | None:intergenic | 20.0% |
| !! | TTTATAATAGCATCTTTCTT+AGG | - | chr2_2:57258517-57258536 | None:intergenic | 20.0% |
| !! | CTTACAAAAGTAAGATATAA+GGG | + | chr2_2:57258969-57258988 | Msa0259870:intron | 20.0% |
| !! | TTACAAAAGTAAGATATAAG+GGG | + | chr2_2:57258970-57258989 | Msa0259870:intron | 20.0% |
| !! | AGATATTAAAGAAATTGGAA+TGG | - | chr2_2:57259175-57259194 | None:intergenic | 20.0% |
| !! | GAACTAGATATTAAAGAAAT+TGG | - | chr2_2:57259180-57259199 | None:intergenic | 20.0% |
| !!! | AGACATTACTATTTGTTTTA+TGG | + | chr2_2:57259216-57259235 | Msa0259870:intron | 20.0% |
| !! | ATATGTGAACATATATATTC+TGG | + | chr2_2:57259464-57259483 | Msa0259870:intron | 20.0% |
| !!! | AATAAGTTGTGTTTTTTTAC+AGG | + | chr2_2:57259823-57259842 | Msa0259870:intron | 20.0% |
| !!! | TGTTGATGTTTTAGTTTTTT+TGG | + | chr2_2:57260326-57260345 | Msa0259870:three_prime_UTR | 20.0% |
| !! | TTTGGTTAACCAAAAAAATT+TGG | - | chr2_2:57260481-57260500 | None:intergenic | 20.0% |
| ! | TGAAAAGTTATGAGCTTATA+CGG | + | chr2_2:57257136-57257155 | Msa0259870:intron | 25.0% |
| !!! | GGCATTTTGTTTGATATTTT+AGG | + | chr2_2:57257287-57257306 | Msa0259870:intron | 25.0% |
| ! | TTTCAAACATTAGATGCATA+TGG | + | chr2_2:57257431-57257450 | Msa0259870:intron | 25.0% |
| ! | CAATAAATCTTCATCAAAGT+CGG | + | chr2_2:57257853-57257872 | Msa0259870:intron | 25.0% |
| ! | TATAATAGCATCTTTCTTAG+GGG | - | chr2_2:57258515-57258534 | None:intergenic | 25.0% |
| !!! | TCTATGGTTTGAAACATTTT+CGG | + | chr2_2:57258750-57258769 | Msa0259870:CDS | 25.0% |
| !! | AAAGAATAATGTTGCTTCAT+TGG | + | chr2_2:57258783-57258802 | Msa0259870:intron | 25.0% |
| !!! | CTATTTTTATATTGTCTGAC+AGG | + | chr2_2:57258863-57258882 | Msa0259870:intron | 25.0% |
| ! | GCTTACAAAAGTAAGATATA+AGG | + | chr2_2:57258968-57258987 | Msa0259870:intron | 25.0% |
| ! | TACAAAAGTAAGATATAAGG+GGG | + | chr2_2:57258971-57258990 | Msa0259870:intron | 25.0% |
| ! | AAGATTGATGAGAATTCTAA+TGG | + | chr2_2:57259878-57259897 | Msa0259870:CDS | 25.0% |
| !! | TAGGCTATTTTGTTTGTGAA+TGG | + | chr2_2:57257306-57257325 | Msa0259870:intron | 30.0% |
| !! | AGGCTATTTTGTTTGTGAAT+GGG | + | chr2_2:57257307-57257326 | Msa0259870:intron | 30.0% |
| !! | ATTTTGTTTGTGAATGGGTT+TGG | + | chr2_2:57257312-57257331 | Msa0259870:intron | 30.0% |
| TATGAGCATGCTTATTAATG+AGG | + | chr2_2:57257378-57257397 | Msa0259870:intron | 30.0% | |
| !! | TTTTTGTTTGTGTTTGGTTG+TGG | + | chr2_2:57257704-57257723 | Msa0259870:intron | 30.0% |
| !! | TTTTGTTTGTGTTTGGTTGT+GGG | + | chr2_2:57257705-57257724 | Msa0259870:intron | 30.0% |
| !! | TGTGAATTTTGGTACTGTAA+TGG | + | chr2_2:57257749-57257768 | Msa0259870:intron | 30.0% |
| TATTTGTATTAACAGTGCAC+TGG | + | chr2_2:57257934-57257953 | Msa0259870:intron | 30.0% | |
| AAAATGACTAGACAATGTCA+TGG | + | chr2_2:57258061-57258080 | Msa0259870:CDS | 30.0% | |
| TAAAATACCCTTGACCAATT+GGG | - | chr2_2:57258552-57258571 | None:intergenic | 30.0% | |
| ATAAAATACCCTTGACCAAT+TGG | - | chr2_2:57258553-57258572 | None:intergenic | 30.0% | |
| CTTCACAAAACAAGACTAAT+CGG | + | chr2_2:57259072-57259091 | Msa0259870:CDS | 30.0% | |
| TTCACAAAACAAGACTAATC+GGG | + | chr2_2:57259073-57259092 | Msa0259870:CDS | 30.0% | |
| ACTGACAGTGTAAAATACTT+GGG | + | chr2_2:57259243-57259262 | Msa0259870:intron | 30.0% | |
| CACAAGCACATAATGAATTA+TGG | - | chr2_2:57259507-57259526 | None:intergenic | 30.0% | |
| ATGGATAAGTTATGTAAACC+TGG | + | chr2_2:57259597-57259616 | Msa0259870:intron | 30.0% | |
| TAACACATATCTCAAGATTG+TGG | - | chr2_2:57259664-57259683 | None:intergenic | 30.0% | |
| ! | ATTTGGAATCTTGTACTGAA+TGG | + | chr2_2:57259705-57259724 | Msa0259870:intron | 30.0% |
| ! | CAGAAGCACATAATGAATTA+TGG | - | chr2_2:57259731-57259750 | None:intergenic | 30.0% |
| AGAGAAACGACTTCAATTAT+GGG | + | chr2_2:57259922-57259941 | Msa0259870:CDS | 30.0% | |
| TTATCTTTCAACATTAGACC+AGG | + | chr2_2:57259995-57260014 | Msa0259870:CDS | 30.0% | |
| ! | ATTTCAATCACCTCATTTTC+AGG | - | chr2_2:57260052-57260071 | None:intergenic | 30.0% |
| CTAAAACATCAACAAACATC+AGG | - | chr2_2:57260320-57260339 | None:intergenic | 30.0% | |
| ACACAATTGTGAAGTTCTTA+TGG | + | chr2_2:57260354-57260373 | Msa0259870:three_prime_UTR | 30.0% | |
| !!! | ATTGGTGATGTGTTATGTTT+TGG | + | chr2_2:57260401-57260420 | Msa0259870:three_prime_UTR | 30.0% |
| !!! | TTGGTGATGTGTTATGTTTT+GGG | + | chr2_2:57260402-57260421 | Msa0259870:three_prime_UTR | 30.0% |
| !!! | CAGCATATGCCAAATTTTTT+TGG | + | chr2_2:57260469-57260488 | Msa0259870:three_prime_UTR | 30.0% |
| ACATTAGATGCATATGGAGA+TGG | + | chr2_2:57257437-57257456 | Msa0259870:intron | 35.0% | |
| !!! | CTTATTTTACGAGTGGAGTT+AGG | + | chr2_2:57257489-57257508 | Msa0259870:intron | 35.0% |
| ! | TAAGCTATGGGTGTGAATTT+TGG | + | chr2_2:57257738-57257757 | Msa0259870:intron | 35.0% |
| CAACCATTACTTCATGCTTT+CGG | + | chr2_2:57257982-57258001 | Msa0259870:intron | 35.0% | |
| TAATACCTTTGAACGAGCAT+TGG | - | chr2_2:57258110-57258129 | None:intergenic | 35.0% | |
| ! | GTTGATGTCTTTTGGATTGT+TGG | - | chr2_2:57258232-57258251 | None:intergenic | 35.0% |
| AATCCAAAAGACATCAACTG+TGG | + | chr2_2:57258234-57258253 | Msa0259870:CDS | 35.0% | |
| !! | ATCTAGTTCTTTAGGTTGGA+CGG | - | chr2_2:57258299-57258318 | None:intergenic | 35.0% |
| AGATTTACACCTAGCAAAGA+TGG | + | chr2_2:57258652-57258671 | Msa0259870:intron | 35.0% | |
| AAAAGGTTCCTCAAGATCTA+TGG | + | chr2_2:57258734-57258753 | Msa0259870:CDS | 35.0% | |
| GTTTCAAACCATAGATCTTG+AGG | - | chr2_2:57258745-57258764 | None:intergenic | 35.0% | |
| !! | GGTTTGAAACATTTTCGGTA+AGG | + | chr2_2:57258755-57258774 | Msa0259870:intron | 35.0% |
| TCTGACAGGAATATGTTTCA+TGG | + | chr2_2:57258877-57258896 | Msa0259870:intron | 35.0% | |
| CTGACAGGAATATGTTTCAT+GGG | + | chr2_2:57258878-57258897 | Msa0259870:intron | 35.0% | |
| ! | CTTTTGTAAGCATGTCAGTA+AGG | - | chr2_2:57258959-57258978 | None:intergenic | 35.0% |
| TCACAAAACAAGACTAATCG+GGG | + | chr2_2:57259074-57259093 | Msa0259870:CDS | 35.0% | |
| GACTGACAGTGTAAAATACT+TGG | + | chr2_2:57259242-57259261 | Msa0259870:intron | 35.0% | |
| TCTCAAATTGCTAGTATTCC+AGG | - | chr2_2:57259618-57259637 | None:intergenic | 35.0% | |
| CTCAAGATTGTGGACATATT+CGG | - | chr2_2:57259654-57259673 | None:intergenic | 35.0% | |
| TTCTAATGGTGATATGCAAG+AGG | + | chr2_2:57259892-57259911 | Msa0259870:CDS | 35.0% | |
| GAGAGAAACGACTTCAATTA+TGG | + | chr2_2:57259921-57259940 | Msa0259870:CDS | 35.0% | |
| AATTATGGGTAGATGTTGCT+GGG | + | chr2_2:57259936-57259955 | Msa0259870:CDS | 35.0% | |
| TTGTCTCGAGGTAATTGTTA+TGG | + | chr2_2:57259962-57259981 | Msa0259870:CDS | 35.0% | |
| GAGGTAATTGTTATGGTACT+GGG | + | chr2_2:57259969-57259988 | Msa0259870:CDS | 35.0% | |
| AGGTAATTGTTATGGTACTG+GGG | + | chr2_2:57259970-57259989 | Msa0259870:CDS | 35.0% | |
| GAATCAATTCTCTACTGCTA+TGG | + | chr2_2:57260162-57260181 | Msa0259870:CDS | 35.0% | |
| !! | GGAAGCTTTAGAGAATCAAT+CGG | + | chr2_2:57260204-57260223 | Msa0259870:CDS | 35.0% |
| !! | GAAGCTTTAGAGAATCAATC+GGG | + | chr2_2:57260205-57260224 | Msa0259870:CDS | 35.0% |
| AATTGAAAGAGAACATGGTG+AGG | - | chr2_2:57260384-57260403 | None:intergenic | 35.0% | |
| TCACCATGTTCTCTTTCAAT+TGG | + | chr2_2:57260383-57260402 | Msa0259870:three_prime_UTR | 35.0% | |
| TCACCAATTGAAAGAGAACA+TGG | - | chr2_2:57260389-57260408 | None:intergenic | 35.0% | |
| TTAACCAAAACTAGTGACAC+AGG | + | chr2_2:57260492-57260511 | Msa0259870:three_prime_UTR | 35.0% | |
| !! | ATAACCTGTGTCACTAGTTT+TGG | - | chr2_2:57260499-57260518 | None:intergenic | 35.0% |
| ! | TAGTGACACAGGTTATGTTT+TGG | + | chr2_2:57260503-57260522 | Msa0259870:three_prime_UTR | 35.0% |
| ! | TTGTTTGTGAATGGGTTTGG+TGG | + | chr2_2:57257315-57257334 | Msa0259870:intron | 40.0% |
| !!! | AGTGTTTTCTGGGACTGTTT+TGG | + | chr2_2:57257655-57257674 | Msa0259870:intron | 40.0% |
| !! | CAAAGTCGGTGTTTTCAGTA+TGG | + | chr2_2:57257867-57257886 | Msa0259870:intron | 40.0% |
| ! | CGAAAGCATGAAGTAATGGT+TGG | - | chr2_2:57257984-57258003 | None:intergenic | 40.0% |
| ! | CAACCGAAAGCATGAAGTAA+TGG | - | chr2_2:57257988-57258007 | None:intergenic | 40.0% |
| !! | CGTTCAAAGGTATTACAACC+TGG | + | chr2_2:57258115-57258134 | Msa0259870:CDS | 40.0% |
| ! | GTTGCTTTAGCAAGATATCC+AGG | - | chr2_2:57258136-57258155 | None:intergenic | 40.0% |
| GATATCTTGCTAAAGCAACC+AGG | + | chr2_2:57258137-57258156 | Msa0259870:CDS | 40.0% | |
| !!! | GTGGCAACCCTAGTTTTTTT+CGG | - | chr2_2:57258189-57258208 | None:intergenic | 40.0% |
| GAAAAAAACTAGGGTTGCCA+CGG | + | chr2_2:57258188-57258207 | Msa0259870:CDS | 40.0% | |
| !! | TTTTGGATTGTTGGTGAGGT+GGG | - | chr2_2:57258223-57258242 | None:intergenic | 40.0% |
| ! | TGTCTTTTGGATTGTTGGTG+AGG | - | chr2_2:57258227-57258246 | None:intergenic | 40.0% |
| !! | GGACATCTAGTTCTTTAGGT+TGG | - | chr2_2:57258303-57258322 | None:intergenic | 40.0% |
| !! | GGTTGGACATCTAGTTCTTT+AGG | - | chr2_2:57258307-57258326 | None:intergenic | 40.0% |
| ! | ATCTAGAACAGTAGGTTGGA+CGG | - | chr2_2:57258362-57258381 | None:intergenic | 40.0% |
| ! | AAGATGGTGCTAATGCAATG+AGG | + | chr2_2:57258668-57258687 | Msa0259870:CDS | 40.0% |
| ATGCAATGAGGATGGCTATT+AGG | + | chr2_2:57258680-57258699 | Msa0259870:CDS | 40.0% | |
| TGGCTATTAGGCGTCAATTT+AGG | + | chr2_2:57258692-57258711 | Msa0259870:CDS | 40.0% | |
| GGCTATTAGGCGTCAATTTA+GGG | + | chr2_2:57258693-57258712 | Msa0259870:CDS | 40.0% | |
| !!! | TTAGGGATGTTTTTTCGTGC+TGG | + | chr2_2:57258710-57258729 | Msa0259870:CDS | 40.0% |
| !!! | TAGGGATGTTTTTTCGTGCT+GGG | + | chr2_2:57258711-57258730 | Msa0259870:CDS | 40.0% |
| !!! | TGTTTTTTCGTGCTGGGAAA+AGG | + | chr2_2:57258717-57258736 | Msa0259870:CDS | 40.0% |
| ! | GCTTCATTGGTTGAAAACTG+TGG | + | chr2_2:57258796-57258815 | Msa0259870:intron | 40.0% |
| ATGGGAGACTCAATATGATG+CGG | + | chr2_2:57258896-57258915 | Msa0259870:CDS | 40.0% | |
| CTCAATATGATGCGGAAATC+AGG | + | chr2_2:57258904-57258923 | Msa0259870:CDS | 40.0% | |
| ATAAGGGGGAAAGACCTAAA+TGG | + | chr2_2:57258985-57259004 | Msa0259870:intron | 40.0% | |
| !! | ATGCTGGTCTTCTCGAATAT+TGG | + | chr2_2:57259024-57259043 | Msa0259870:CDS | 40.0% |
| AAACAAGACTAATCGGGGTT+CGG | + | chr2_2:57259079-57259098 | Msa0259870:CDS | 40.0% | |
| AAGAGTTCATCAGGATGGAT+AGG | - | chr2_2:57259272-57259291 | None:intergenic | 40.0% | |
| CAATCTTCGTTAGTTGAGTC+AGG | - | chr2_2:57259865-57259884 | None:intergenic | 40.0% | |
| TAATGGTGATATGCAAGAGG+TGG | + | chr2_2:57259895-57259914 | Msa0259870:CDS | 40.0% | |
| AATGGTGATATGCAAGAGGT+GGG | + | chr2_2:57259896-57259915 | Msa0259870:CDS | 40.0% | |
| CAATTATGGGTAGATGTTGC+TGG | + | chr2_2:57259935-57259954 | Msa0259870:CDS | 40.0% | |
| ATTATGGGTAGATGTTGCTG+GGG | + | chr2_2:57259937-57259956 | Msa0259870:CDS | 40.0% | |
| CGAGGTAATTGTTATGGTAC+TGG | + | chr2_2:57259968-57259987 | Msa0259870:CDS | 40.0% | |
| ATGTTGTCCTCCTGAAAATG+AGG | + | chr2_2:57260039-57260058 | Msa0259870:CDS | 40.0% | |
| !! | TCAATCACCTCATTTTCAGG+AGG | - | chr2_2:57260049-57260068 | None:intergenic | 40.0% |
| GGTGATTGAAATGTTTCGTC+AGG | + | chr2_2:57260060-57260079 | Msa0259870:CDS | 40.0% | |
| GATTGAAATGTTTCGTCAGG+AGG | + | chr2_2:57260063-57260082 | Msa0259870:CDS | 40.0% | |
| CTACTGCTATGGAAGAATTC+AGG | + | chr2_2:57260173-57260192 | Msa0259870:CDS | 40.0% | |
| TCAAGAGCAGGATCATAATG+TGG | - | chr2_2:57260274-57260293 | None:intergenic | 40.0% | |
| TCTGATTGATCATCAAGAGC+AGG | - | chr2_2:57260286-57260305 | None:intergenic | 40.0% | |
| ! | TGCTCTTGATGATCAATCAG+AGG | + | chr2_2:57260285-57260304 | Msa0259870:CDS | 40.0% |
| ACATCAACAAACATCAGGTG+AGG | - | chr2_2:57260315-57260334 | None:intergenic | 40.0% | |
| !! | TGTGTTATGTTTTGGGCTGT+AGG | + | chr2_2:57260409-57260428 | Msa0259870:three_prime_UTR | 40.0% |
| !!! | AGGTTATGTTTTGGCGCTTT+AGG | + | chr2_2:57260512-57260531 | Msa0259870:three_prime_UTR | 40.0% |
| TGCATATGGAGATGGATGCT+AGG | + | chr2_2:57257445-57257464 | Msa0259870:intron | 45.0% | |
| CACTCGTAAAATAAGCACGC+CGG | - | chr2_2:57257484-57257503 | None:intergenic | 45.0% | |
| TACCTCAAGAGGCAATCTCT+AGG | - | chr2_2:57257517-57257536 | None:intergenic | 45.0% | |
| AGAGATTGCCTCTTGAGGTA+AGG | + | chr2_2:57257517-57257536 | Msa0259870:intron | 45.0% | |
| !!! | TTTTCTGGGACTGTTTTGGC+AGG | + | chr2_2:57257659-57257678 | Msa0259870:intron | 45.0% |
| !!! | TTTCTGGGACTGTTTTGGCA+GGG | + | chr2_2:57257660-57257679 | Msa0259870:intron | 45.0% |
| TGTTTGTGTTTGGTTGTGGG+AGG | + | chr2_2:57257708-57257727 | Msa0259870:intron | 45.0% | |
| TATGCATACATGTCGTGCAC+TGG | - | chr2_2:57257895-57257914 | None:intergenic | 45.0% | |
| TTCCACCAATGCTCGTTCAA+AGG | + | chr2_2:57258102-57258121 | Msa0259870:CDS | 45.0% | |
| !! | TACCTTTGAACGAGCATTGG+TGG | - | chr2_2:57258107-57258126 | None:intergenic | 45.0% |
| GTTGGCTACAACAAGTTTCC+TGG | - | chr2_2:57258158-57258177 | None:intergenic | 45.0% | |
| AGACGCGCCGAAAAAAACTA+GGG | + | chr2_2:57258179-57258198 | Msa0259870:CDS | 45.0% | |
| !! | CTTTTGGATTGTTGGTGAGG+TGG | - | chr2_2:57258224-57258243 | None:intergenic | 45.0% |
| !! | GGACCACAGTTGATGTCTTT+TGG | - | chr2_2:57258240-57258259 | None:intergenic | 45.0% |
| ! | GGACATCTAGAACAGTAGGT+TGG | - | chr2_2:57258366-57258385 | None:intergenic | 45.0% |
| ! | GGTTGGACATCTAGAACAGT+AGG | - | chr2_2:57258370-57258389 | None:intergenic | 45.0% |
| CAGATGATCATCCTCCTCAA+GGG | - | chr2_2:57258452-57258471 | None:intergenic | 45.0% | |
| AAACACACATACCGAGCAAG+AGG | + | chr2_2:57258489-57258508 | Msa0259870:CDS | 45.0% | |
| AAGACCATCATACGCCCAAT+TGG | + | chr2_2:57258535-57258554 | Msa0259870:CDS | 45.0% | |
| TTGACCAATTGGGCGTATGA+TGG | - | chr2_2:57258542-57258561 | None:intergenic | 45.0% | |
| ATCATACGCCCAATTGGTCA+AGG | + | chr2_2:57258541-57258560 | Msa0259870:CDS | 45.0% | |
| TCATACGCCCAATTGGTCAA+GGG | + | chr2_2:57258542-57258561 | Msa0259870:CDS | 45.0% | |
| GCATTAGCACCATCTTTGCT+AGG | - | chr2_2:57258664-57258683 | None:intergenic | 45.0% | |
| ! | TGGTGCTAATGCAATGAGGA+TGG | + | chr2_2:57258672-57258691 | Msa0259870:CDS | 45.0% |
| ! | CATATTTCTGCAGCAGCCAA+AGG | - | chr2_2:57258831-57258850 | None:intergenic | 45.0% |
| GGGGAAAGACCTAAATGGAT+GGG | + | chr2_2:57258990-57259009 | Msa0259870:CDS | 45.0% | |
| AAGACCTAAATGGATGGGAG+AGG | + | chr2_2:57258995-57259014 | Msa0259870:CDS | 45.0% | |
| AACAAGACTAATCGGGGTTC+GGG | + | chr2_2:57259080-57259099 | Msa0259870:CDS | 45.0% | |
| CCAAGAAGAGTTCATCAGGA+TGG | - | chr2_2:57259277-57259296 | None:intergenic | 45.0% | |
| CCATCCTGATGAACTCTTCT+TGG | + | chr2_2:57259274-57259293 | Msa0259870:CDS | 45.0% | |
| GTAGCCAAGAAGAGTTCATC+AGG | - | chr2_2:57259281-57259300 | None:intergenic | 45.0% | |
| TCTTCTTGGCTACTCGTAAG+AGG | + | chr2_2:57259288-57259307 | Msa0259870:CDS | 45.0% | |
| TAAGAGGAAGTCTGGCGATT+GGG | + | chr2_2:57259304-57259323 | Msa0259870:CDS | 45.0% | |
| TTATGGGTAGATGTTGCTGG+GGG | + | chr2_2:57259938-57259957 | Msa0259870:CDS | 45.0% | |
| TGAGTCAGATGACTTACACC+TGG | - | chr2_2:57260016-57260035 | None:intergenic | 45.0% | |
| TTAGAGAATCAATCGGGCGA+TGG | + | chr2_2:57260211-57260230 | Msa0259870:CDS | 45.0% | |
| !!! | TTTTTTTATTATCTATTTTA+AGG | + | chr2_2:57257266-57257285 | Msa0259870:intron | 5.0% |
| GCTAGGTAGTTCGAGTACTC+CGG | + | chr2_2:57257462-57257481 | Msa0259870:intron | 50.0% | |
| !!! | CGGCGTGCTTATTTTACGAG+TGG | + | chr2_2:57257482-57257501 | Msa0259870:intron | 50.0% |
| CACCTAGAGATTGCCTCTTG+AGG | + | chr2_2:57257512-57257531 | Msa0259870:intron | 50.0% | |
| CAGACTCGCGAAACACCAAA+GGG | - | chr2_2:57257552-57257571 | None:intergenic | 50.0% | |
| ACAGACTCGCGAAACACCAA+AGG | - | chr2_2:57257553-57257572 | None:intergenic | 50.0% | |
| ! | TTGGTGTTTCGCGAGTCTGT+CGG | + | chr2_2:57257553-57257572 | Msa0259870:intron | 50.0% |
| !! | TTTCGCGAGTCTGTCGGTTT+GGG | + | chr2_2:57257559-57257578 | Msa0259870:intron | 50.0% |
| ! | CCTGCTGTGCAGTGTTTTCT+GGG | + | chr2_2:57257645-57257664 | Msa0259870:intron | 50.0% |
| !!! | TTCTGGGACTGTTTTGGCAG+GGG | + | chr2_2:57257661-57257680 | Msa0259870:intron | 50.0% |
| TTGTGTTTGGTTGTGGGAGG+TGG | + | chr2_2:57257711-57257730 | Msa0259870:intron | 50.0% | |
| TGTGTTTGGTTGTGGGAGGT+GGG | + | chr2_2:57257712-57257731 | Msa0259870:intron | 50.0% | |
| !!! | TTTTTTTCGGCGCGTCTCGT+TGG | - | chr2_2:57258176-57258195 | None:intergenic | 50.0% |
| GAGACGCGCCGAAAAAAACT+AGG | + | chr2_2:57258178-57258197 | Msa0259870:CDS | 50.0% | |
| !! | AGTTCTTTAGGTTGGACGGC+TGG | - | chr2_2:57258295-57258314 | None:intergenic | 50.0% |
| ACTTGAGAAGGTAGGACCAC+TGG | - | chr2_2:57258406-57258425 | None:intergenic | 50.0% | |
| GTGCAGTCACTTGAGAAGGT+AGG | - | chr2_2:57258414-57258433 | None:intergenic | 50.0% | |
| ACCTTCTCAAGTGACTGCAC+CGG | + | chr2_2:57258414-57258433 | Msa0259870:CDS | 50.0% | |
| TGATCATCCTCCTCAAGGGA+AGG | - | chr2_2:57258448-57258467 | None:intergenic | 50.0% | |
| GCAGATGATCATCCTCCTCA+AGG | - | chr2_2:57258453-57258472 | None:intergenic | 50.0% | |
| GAGGAGGATGATCATCTGCA+AGG | + | chr2_2:57258454-57258473 | Msa0259870:CDS | 50.0% | |
| TGATCATCTGCAAGGTGTGC+AGG | + | chr2_2:57258462-57258481 | Msa0259870:CDS | 50.0% | |
| GATCATCTGCAAGGTGTGCA+GGG | + | chr2_2:57258463-57258482 | Msa0259870:CDS | 50.0% | |
| TTTCTTAGGGGCCTCTTGCT+CGG | - | chr2_2:57258503-57258522 | None:intergenic | 50.0% | |
| ! | ACTGTGGTGCCTTGTTCCTT+TGG | + | chr2_2:57258812-57258831 | Msa0259870:intron | 50.0% |
| ! | GCATGTCAGTAAGGCGCTTT+GGG | - | chr2_2:57258950-57258969 | None:intergenic | 50.0% |
| ! | AGCATGTCAGTAAGGCGCTT+TGG | - | chr2_2:57258951-57258970 | None:intergenic | 50.0% |
| GGGGGAAAGACCTAAATGGA+TGG | + | chr2_2:57258989-57259008 | Msa0259870:intron | 50.0% | |
| GCATCCTCTCCCATCCATTT+AGG | - | chr2_2:57259002-57259021 | None:intergenic | 50.0% | |
| ATGGGAGAGGATGCATATGC+TGG | + | chr2_2:57259008-57259027 | Msa0259870:CDS | 50.0% | |
| ACTAATCGGGGTTCGGGTAA+AGG | + | chr2_2:57259086-57259105 | Msa0259870:CDS | 50.0% | |
| TGTCCATACCACAGGTCGTA+AGG | + | chr2_2:57259115-57259134 | Msa0259870:CDS | 50.0% | |
| GCTACTCGTAAGAGGAAGTC+TGG | + | chr2_2:57259296-57259315 | Msa0259870:CDS | 50.0% | |
| GTAAGAGGAAGTCTGGCGAT+TGG | + | chr2_2:57259303-57259322 | Msa0259870:CDS | 50.0% | |
| GATCAGCTTCAGCAGCTCTT+TGG | - | chr2_2:57260123-57260142 | None:intergenic | 50.0% | |
| ! | GGAAGAATTCAGGAAGCGCA+TGG | + | chr2_2:57260183-57260202 | Msa0259870:CDS | 50.0% |
| TGGCACTGCCTTACCTCAAG+AGG | - | chr2_2:57257528-57257547 | None:intergenic | 55.0% | |
| ! | GTTTCGCGAGTCTGTCGGTT+TGG | + | chr2_2:57257558-57257577 | Msa0259870:intron | 55.0% |
| !! | TTCGCGAGTCTGTCGGTTTG+GGG | + | chr2_2:57257560-57257579 | Msa0259870:intron | 55.0% |
| GCTCGGTTATGACTGCTGTC+AGG | + | chr2_2:57257592-57257611 | Msa0259870:intron | 55.0% | |
| ! | GCCTGCTGTGCAGTGTTTTC+TGG | + | chr2_2:57257644-57257663 | Msa0259870:intron | 55.0% |
| CCCAGAAAACACTGCACAGC+AGG | - | chr2_2:57257648-57257667 | None:intergenic | 55.0% | |
| GTGTTTGGTTGTGGGAGGTG+GGG | + | chr2_2:57257713-57257732 | Msa0259870:intron | 55.0% | |
| TGTTTGGTTGTGGGAGGTGG+GGG | + | chr2_2:57257714-57257733 | Msa0259870:intron | 55.0% | |
| !! | TTTAGGTTGGACGGCTGGTC+GGG | - | chr2_2:57258290-57258309 | None:intergenic | 55.0% |
| !! | CTTTAGGTTGGACGGCTGGT+CGG | - | chr2_2:57258291-57258310 | None:intergenic | 55.0% |
| ! | AGAACAGTAGGTTGGACGGC+TGG | - | chr2_2:57258358-57258377 | None:intergenic | 55.0% |
| ! | TCAAGGGAAGGTGGTGATGC+CGG | - | chr2_2:57258436-57258455 | None:intergenic | 55.0% |
| ATCACCACCTTCCCTTGAGG+AGG | + | chr2_2:57258438-57258457 | Msa0259870:CDS | 55.0% | |
| TCATCCTCCTCAAGGGAAGG+TGG | - | chr2_2:57258445-57258464 | None:intergenic | 55.0% | |
| CTGCAGCAGCCAAAGGAACA+AGG | - | chr2_2:57258824-57258843 | None:intergenic | 55.0% | |
| AATCGGGGTTCGGGTAAAGG+AGG | + | chr2_2:57259089-57259108 | Msa0259870:CDS | 55.0% | |
| GAGCCTTACGACCTGTGGTA+TGG | - | chr2_2:57259121-57259140 | None:intergenic | 55.0% | |
| !! | GATTGGGTTGACAGTCGTGC+TGG | + | chr2_2:57259320-57259339 | Msa0259870:CDS | 55.0% |
| GGTGATATGCAAGAGGTGGG+CGG | + | chr2_2:57259899-57259918 | Msa0259870:CDS | 55.0% | |
| GTAAGGCAGTGCCAGCCCTT+TGG | + | chr2_2:57257534-57257553 | Msa0259870:intron | 60.0% | |
| CTCGCGAAACACCAAAGGGC+TGG | - | chr2_2:57257548-57257567 | None:intergenic | 60.0% | |
| !! | TCGCGAGTCTGTCGGTTTGG+GGG | + | chr2_2:57257561-57257580 | Msa0259870:intron | 60.0% |
| GGAGGTGGGGGCTAAGCTAT+GGG | + | chr2_2:57257726-57257745 | Msa0259870:intron | 60.0% | |
| ! | GTTGGTGAGGTGGGCTCAAC+TGG | - | chr2_2:57258214-57258233 | None:intergenic | 60.0% |
| !! | TTAGGTTGGACGGCTGGTCG+GGG | - | chr2_2:57258289-57258308 | None:intergenic | 60.0% |
| ! | AGTAGGTTGGACGGCTGGTC+GGG | - | chr2_2:57258353-57258372 | None:intergenic | 60.0% |
| ! | CAGTAGGTTGGACGGCTGGT+CGG | - | chr2_2:57258354-57258373 | None:intergenic | 60.0% |
| !! | GTAGGACCACTGGTGCTGGT+GGG | - | chr2_2:57258396-57258415 | None:intergenic | 60.0% |
| GAAGGTAGGACCACTGGTGC+TGG | - | chr2_2:57258400-57258419 | None:intergenic | 60.0% | |
| GCCGGTGCAGTCACTTGAGA+AGG | - | chr2_2:57258418-57258437 | None:intergenic | 60.0% | |
| GGCATCACCACCTTCCCTTG+AGG | + | chr2_2:57258435-57258454 | Msa0259870:CDS | 60.0% | |
| GGAGGAGCTGTCCATACCAC+AGG | + | chr2_2:57259107-57259126 | Msa0259870:CDS | 60.0% | |
| GTGGTGAGCCTTACGACCTG+TGG | - | chr2_2:57259126-57259145 | None:intergenic | 60.0% | |
| TCGTAAGGCTCACCACGACG+TGG | + | chr2_2:57259130-57259149 | Msa0259870:CDS | 60.0% | |
| CCATGTCTAGTGCCACGTCG+TGG | - | chr2_2:57259145-57259164 | None:intergenic | 60.0% | |
| CCACGACGTGGCACTAGACA+TGG | + | chr2_2:57259142-57259161 | Msa0259870:CDS | 60.0% | |
| GTTGCTGGGGGTTTGTCTCG+AGG | + | chr2_2:57259950-57259969 | Msa0259870:CDS | 60.0% | |
| !! | CGCGAGTCTGTCGGTTTGGG+GGG | + | chr2_2:57257562-57257581 | Msa0259870:intron | 65.0% |
| !! | TGTCGGTTTGGGGGGTCTGC+TGG | + | chr2_2:57257570-57257589 | Msa0259870:intron | 65.0% |
| ! | GTTTGGGGGGTCTGCTGGCT+CGG | + | chr2_2:57257575-57257594 | Msa0259870:intron | 65.0% |
| GGGAGGTGGGGGCTAAGCTA+TGG | + | chr2_2:57257725-57257744 | Msa0259870:intron | 65.0% | |
| ! | GGGAAGTGGGATGGCTGGTC+GGG | - | chr2_2:57258269-57258288 | None:intergenic | 65.0% |
| GGGGAAGTGGGATGGCTGGT+CGG | - | chr2_2:57258270-57258289 | None:intergenic | 65.0% | |
| ! | GGGAGGTTGGATGGCTGGTC+GGG | - | chr2_2:57258332-57258351 | None:intergenic | 65.0% |
| GGGGAGGTTGGATGGCTGGT+CGG | - | chr2_2:57258333-57258352 | None:intergenic | 65.0% | |
| ! | GTAGGTTGGACGGCTGGTCG+GGG | - | chr2_2:57258352-57258371 | None:intergenic | 65.0% |
| !! | CTGGTGCTGGTGGGTCAGGT+TGG | - | chr2_2:57258387-57258406 | None:intergenic | 65.0% |
| ACCTGACCCACCAGCACCAG+TGG | + | chr2_2:57258387-57258406 | Msa0259870:CDS | 65.0% | |
| !! | ACCACTGGTGCTGGTGGGTC+AGG | - | chr2_2:57258391-57258410 | None:intergenic | 65.0% |
| ! | GGTAGGACCACTGGTGCTGG+TGG | - | chr2_2:57258397-57258416 | None:intergenic | 65.0% |
| ! | GAGGTGGGCTCAACTGGCCG+TGG | - | chr2_2:57258208-57258227 | None:intergenic | 70.0% |
| ! | GGATGGCTGGTCGGGCAGGT+TGG | - | chr2_2:57258261-57258280 | None:intergenic | 70.0% |
| ! | AGTGGGATGGCTGGTCGGGC+AGG | - | chr2_2:57258265-57258284 | None:intergenic | 70.0% |
| GGTCGGGGAAGTGGGATGGC+TGG | - | chr2_2:57258274-57258293 | None:intergenic | 70.0% | |
| ! | GGCTGGTCGGGGAAGTGGGA+TGG | - | chr2_2:57258278-57258297 | None:intergenic | 70.0% |
| ! | GGACGGCTGGTCGGGGAAGT+GGG | - | chr2_2:57258282-57258301 | None:intergenic | 70.0% |
| ! | TGGACGGCTGGTCGGGGAAG+TGG | - | chr2_2:57258283-57258302 | None:intergenic | 70.0% |
| ! | GGATGGCTGGTCGGGCAGGT+TGG | - | chr2_2:57258261-57258280 | None:intergenic | 70.0% |
| ! | GGTTGGATGGCTGGTCGGGC+AGG | - | chr2_2:57258328-57258347 | None:intergenic | 70.0% |
| GGTCGGGGAGGTTGGATGGC+TGG | - | chr2_2:57258337-57258356 | None:intergenic | 70.0% | |
| ! | GGCTGGTCGGGGAGGTTGGA+TGG | - | chr2_2:57258341-57258360 | None:intergenic | 70.0% |
| GGCTGCAGCAGCACGTGCTG+AGG | + | chr2_2:57260084-57260103 | Msa0259870:CDS | 70.0% | |
| ! | GGACGGCTGGTCGGGGAGGT+TGG | - | chr2_2:57258345-57258364 | None:intergenic | 75.0% |
| ! | GGTTGGACGGCTGGTCGGGG+AGG | - | chr2_2:57258286-57258305 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57256964 | 57260605 | 57256964 | ID=Msa0259870;Name=Msa0259870 |
| chr2_2 | mRNA | 57256964 | 57260605 | 57256964 | ID=Msa0259870-mRNA-1;Parent=Msa0259870;Name=Msa0259870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.57|0.37|0.75|0.57|0.5|8|284|493 |
| chr2_2 | exon | 57256964 | 57256970 | 57256964 | ID=Msa0259870-mRNA-1:exon:17354;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57257309 | 57257316 | 57257309 | ID=Msa0259870-mRNA-1:exon:17355;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57258061 | 57258563 | 57258061 | ID=Msa0259870-mRNA-1:exon:17356;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57258654 | 57258771 | 57258654 | ID=Msa0259870-mRNA-1:exon:17357;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57258885 | 57258977 | 57258885 | ID=Msa0259870-mRNA-1:exon:17358;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57258990 | 57259163 | 57258990 | ID=Msa0259870-mRNA-1:exon:17359;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57259251 | 57259352 | 57259251 | ID=Msa0259870-mRNA-1:exon:17360;Parent=Msa0259870-mRNA-1 |
| chr2_2 | exon | 57259845 | 57260605 | 57259845 | ID=Msa0259870-mRNA-1:exon:17361;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57256964 | 57256970 | 57256964 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57257309 | 57257316 | 57257309 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57258061 | 57258563 | 57258061 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57258654 | 57258771 | 57258654 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57258885 | 57258977 | 57258885 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57258990 | 57259163 | 57258990 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57259251 | 57259352 | 57259251 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | CDS | 57259845 | 57260321 | 57259845 | ID=Msa0259870-mRNA-1:cds;Parent=Msa0259870-mRNA-1 |
| chr2_2 | three_prime_UTR | 57260322 | 57260605 | 57260322 | ID=Msa0259870-mRNA-1:three_prime_utr;Parent=Msa0259870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
