AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887810 MtrunA17_Chr4g0039731 43.850 374 168 7 86 424 161 527 1.75e-77 256
Msa0887810 MtrunA17_Chr3g0086081 32.618 233 135 4 106 327 4 225 1.29e-29 117
Msa0887810 MtrunA17_Chr8g0345501 26.557 305 199 9 95 376 413 715 1.73e-24 106
Msa0887810 MtrunA17_Chr4g0010341 36.364 143 84 2 87 222 181 323 1.13e-23 102
Msa0887810 MtrunA17_Chr1g0168171 60.759 79 29 2 156 233 1 78 7.08e-23 92.4
Msa0887810 MtrunA17_Chr4g0025081 30.315 254 154 9 93 325 231 482 1.33e-21 97.1
Msa0887810 MtrunA17_Chr1g0176161 29.921 254 155 9 93 325 158 409 8.29e-21 94.7
Msa0887810 MtrunA17_Chr1g0179631 23.100 329 222 8 90 393 512 834 2.30e-13 72.4
Msa0887810 MtrunA17_Chr2g0322881 22.671 322 215 11 95 390 337 650 7.49e-13 70.5
Msa0887810 MtrunA17_Chr7g0231401 23.427 286 181 11 133 390 325 600 9.13e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 140 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAATAGCATCTTTCTT+AGG 0.145906 6_1:-50763506 None:intergenic
GGCTATTAGGCGTCAATTTC+GGG 0.176665 6_1:+50763685 Msa0887810:CDS
GAGAGAAACGACTTCAATTA+TGG 0.254171 6_1:+50764913 Msa0887810:CDS
GGTTGGACATCTAGTTCTTT+AGG 0.256896 6_1:-50763296 None:intergenic
GAGGTAATTGTTATGGTATT+GGG 0.258770 6_1:+50764961 Msa0887810:CDS
TGGCTATTAGGCGTCAATTT+CGG 0.262175 6_1:+50763684 Msa0887810:CDS
ATGCTGGTCTTCTTGAATAT+TGG 0.281800 6_1:+50764016 Msa0887810:CDS
ATTGGTGACGTGTTATGTTT+TGG 0.295242 6_1:+50765394 Msa0887810:three_prime_UTR
ATAACCTGTGTCACTAGTTT+TGG 0.298958 6_1:-50765489 None:intergenic
CTCAATATGATGCGGAAATC+AGG 0.302840 6_1:+50763896 Msa0887810:CDS
CCATCCTGATGAACTCTTCT+TGG 0.306942 6_1:+50764266 Msa0887810:CDS
GCATCCTCTCCCATCCATTT+AGG 0.314255 6_1:-50763991 None:intergenic
GCTTACAAAAGTAAGATATA+AGG 0.320544 6_1:+50763960 Msa0887810:CDS
CTTCACAAAACAAGACTAAT+CGG 0.320914 6_1:+50764064 Msa0887810:CDS
CGAGGTAATTGTTATGGTAT+TGG 0.325099 6_1:+50764960 Msa0887810:CDS
AGTAGGTTGGACGGCTGGTC+GGG 0.331759 6_1:-50763342 None:intergenic
GATCAGCTTCAGCAGCTCTT+TGG 0.342233 6_1:-50765112 None:intergenic
ATAAAATACCCTTGACCAAT+TGG 0.342640 6_1:-50763542 None:intergenic
TTTAATTTCTACTAATTGTA+TGG 0.351738 6_1:+50765430 Msa0887810:three_prime_UTR
AAAAGGTTCCTCAAGATCTA+TGG 0.354768 6_1:+50763726 Msa0887810:CDS
CTACTGCTATGGAAGAATTC+AGG 0.367453 6_1:+50765165 Msa0887810:CDS
ATGCAATGAGGATGGCTATT+AGG 0.367943 6_1:+50763672 Msa0887810:CDS
TTATAATAGCATCTTTCTTA+GGG 0.373281 6_1:-50763505 None:intergenic
GCATGTCAGTAAGGCGCTTT+GGG 0.375371 6_1:-50763939 None:intergenic
TTGTCTCGAGGTAATTGTTA+TGG 0.375766 6_1:+50764954 Msa0887810:CDS
GGTCGGGGAGGTTGGATGGC+TGG 0.377425 6_1:-50763326 None:intergenic
CAATTATGGGTAGATGTTGC+TGG 0.379900 6_1:+50764927 Msa0887810:CDS
CTTACAAAAGTAAGATATAA+GGG 0.382660 6_1:+50763961 Msa0887810:CDS
GGTTGGATGGCTGGTCGGGC+AGG 0.388938 6_1:-50763317 None:intergenic
GGGAGGTTGGATGGCTGGTC+GGG 0.392962 6_1:-50763321 None:intergenic
AGCATGTCAGTAAGGCGCTT+TGG 0.396055 6_1:-50763940 None:intergenic
GGACGGCTGGTCGGGGAGGT+TGG 0.399368 6_1:-50763334 None:intergenic
AACAAGACTAATCGGGGTTC+GGG 0.400300 6_1:+50764072 Msa0887810:CDS
AATTATGGGTAGATGTTGCT+GGG 0.404667 6_1:+50764928 Msa0887810:CDS
TCACCATGTTCTCTTTCAAT+TGG 0.408880 6_1:+50765376 Msa0887810:three_prime_UTR
TAGTGACACAGGTTATGTTT+TGG 0.410283 6_1:+50765496 Msa0887810:three_prime_UTR
CTAAAACACCAACAAACATT+AGG 0.423848 6_1:-50765309 None:intergenic
GACTGACAGTGTAAAATACT+TGG 0.426930 6_1:+50764234 Msa0887810:intron
TGATCATCTGCAAGGTGTGC+AGG 0.431034 6_1:+50763454 Msa0887810:CDS
TCTGACAGGAATATGTTTCA+TGG 0.431668 6_1:+50763869 Msa0887810:intron
CAATCTTCGTTAGTTGAGTC+AGG 0.432364 6_1:-50764854 None:intergenic
TTCACAAAACAAGACTAATC+GGG 0.432488 6_1:+50764065 Msa0887810:CDS
AAACAAGACTAATCGGGGTT+CGG 0.436178 6_1:+50764071 Msa0887810:CDS
GGGGAGGTTGGATGGCTGGT+CGG 0.446752 6_1:-50763322 None:intergenic
AAGATTGATGAGAATTCTAA+TGG 0.450583 6_1:+50764870 Msa0887810:CDS
TTTCTTAGGGGCCTCTTGCT+CGG 0.456169 6_1:-50763492 None:intergenic
GGCTGCAGCAGCACGTGCTG+AGG 0.459336 6_1:+50765076 Msa0887810:CDS
GGATGGCTGGTCGGGCAGGT+TGG 0.462997 6_1:-50763313 None:intergenic
ACTAATCGGGGTTCGGGCAA+AGG 0.464856 6_1:+50764078 Msa0887810:CDS
GGCTGGTCGGGGAGGTTGGA+TGG 0.466137 6_1:-50763330 None:intergenic
TAAGAGGAAGTCTGGCGATT+GGG 0.469252 6_1:+50764296 Msa0887810:CDS
AGAGAAACGACTTCAATTAT+GGG 0.470876 6_1:+50764914 Msa0887810:CDS
GTAGCCAAGAAGAGTTCATC+AGG 0.473619 6_1:-50764270 None:intergenic
GGTGATTGAAATGTTTCGTC+AGG 0.476769 6_1:+50765052 Msa0887810:CDS
ATCTAGTTCTTTAGGTTGGA+CGG 0.477088 6_1:-50763288 None:intergenic
TAAAATACCCTTGACCAATT+GGG 0.480390 6_1:-50763541 None:intergenic
AGATTTACACCTAGCAAAGA+TGG 0.482324 6_1:+50763644 Msa0887810:intron
CAGTAGGTTGGACGGCTGGT+CGG 0.485901 6_1:-50763343 None:intergenic
GTAGGTTGGACGGCTGGTCG+GGG 0.489707 6_1:-50763341 None:intergenic
TCTTCTTGGCTACTCGTAAG+AGG 0.493331 6_1:+50764280 Msa0887810:CDS
GCTACTCGTAAGAGGAAGTC+TGG 0.496029 6_1:+50764288 Msa0887810:CDS
AAGACCATCATACGCCCAAT+TGG 0.499185 6_1:+50763527 Msa0887810:CDS
GGAAGCTTTAGAGAATCAAT+CGG 0.509751 6_1:+50765196 Msa0887810:CDS
GGACATCTAGTTCTTTAGGT+TGG 0.514643 6_1:-50763292 None:intergenic
AGATCAGTAGGTTGGACGGC+TGG 0.515008 6_1:-50763347 None:intergenic
GCATTAGCACCATCTTTGCT+AGG 0.518356 6_1:-50763653 None:intergenic
GAATCAATTCTCTACTGCTA+TGG 0.520159 6_1:+50765154 Msa0887810:CDS
TTGACCAATTGGGCGTATGA+TGG 0.526388 6_1:-50763531 None:intergenic
GCAGATGATCATCCTCCTCA+AGG 0.541005 6_1:-50763442 None:intergenic
ACACAATTGTGAAGTTCGTA+TGG 0.542407 6_1:+50765347 Msa0887810:three_prime_UTR
AAGAGTTCATCAGGATGGAT+AGG 0.544009 6_1:-50764261 None:intergenic
CTGACAGGAATATGTTTCAT+GGG 0.544185 6_1:+50763870 Msa0887810:intron
GTAAGAGGAAGTCTGGCGAT+TGG 0.544893 6_1:+50764295 Msa0887810:CDS
ATCATACGCCCAATTGGTCA+AGG 0.549638 6_1:+50763533 Msa0887810:CDS
TGTCCATACCACAGGTCGTA+AGG 0.551241 6_1:+50764107 Msa0887810:CDS
GGTAGGACCACTGGTGCTGG+TGG 0.551590 6_1:-50763386 None:intergenic
TGACCTCACCTAATGTTTGT+TGG 0.552315 6_1:+50765301 Msa0887810:exon
GTTTCAAACCATAGATCTTG+AGG 0.552921 6_1:-50763734 None:intergenic
AAACACACATACCGAGCAAG+AGG 0.553474 6_1:+50763481 Msa0887810:CDS
TCAAGGGAAGGTAGTGATGC+CGG 0.557311 6_1:-50763425 None:intergenic
AGGTAATTGTTATGGTATTG+GGG 0.559314 6_1:+50764962 Msa0887810:CDS
TCTGATTGATCATCAAGAGC+AGG 0.560143 6_1:-50765275 None:intergenic
AGTTGGACATCTAGATCAGT+AGG 0.566990 6_1:-50763359 None:intergenic
TTAGAGAATCAATCGGGCAA+TGG 0.569674 6_1:+50765203 Msa0887810:CDS
AATCGGGGTTCGGGCAAAGG+AGG 0.570234 6_1:+50764081 Msa0887810:CDS
CTGGTGCTGGTGGGTCAAGT+TGG 0.570292 6_1:-50763376 None:intergenic
GAGCCTTACGACCTGTGGTA+TGG 0.575889 6_1:-50764110 None:intergenic
ACTTGAGAAGGTAGGACCAC+TGG 0.576985 6_1:-50763395 None:intergenic
GGTTGGACGGCTGGTCGGGG+AGG 0.577584 6_1:-50763338 None:intergenic
CCAAGAAGAGTTCATCAGGA+TGG 0.580522 6_1:-50764266 None:intergenic
CCACGACGTGGCACTAGACA+TGG 0.582481 6_1:+50764134 Msa0887810:CDS
GAAGGTAGGACCACTGGTGC+TGG 0.582738 6_1:-50763389 None:intergenic
GGAAGAATTCAGGAAGCGCA+TGG 0.584480 6_1:+50765175 Msa0887810:CDS
GATCATCTGCAAGGTGTGCA+GGG 0.585289 6_1:+50763455 Msa0887810:CDS
GCCGGTGCAGTCACTTGAGA+AGG 0.587439 6_1:-50763407 None:intergenic
GATTGAAATGTTTCGTCAGG+AGG 0.588208 6_1:+50765055 Msa0887810:CDS
ATCTAGATCAGTAGGTTGGA+CGG 0.588695 6_1:-50763351 None:intergenic
TAATGGTGATATGCAAGAGG+TGG 0.590246 6_1:+50764887 Msa0887810:CDS
TATAATAGCATCTTTCTTAG+GGG 0.592529 6_1:-50763504 None:intergenic
ATGGGAGAGGATGCATATGC+TGG 0.593184 6_1:+50764000 Msa0887810:CDS
GATTGGGTTGACAGTCGTGC+TGG 0.597801 6_1:+50764312 Msa0887810:CDS
TGCTCTTGATGATCAATCAG+AGG 0.598343 6_1:+50765277 Msa0887810:CDS
TTATCTTTCAACATTAGACC+AGG 0.600042 6_1:+50764987 Msa0887810:CDS
ATTATGGGTAGATGTTGCTG+GGG 0.600229 6_1:+50764929 Msa0887810:CDS
AAGACCTAAATGGATGGGAG+AGG 0.600614 6_1:+50763987 Msa0887810:CDS
GGAGGAGCTGTCCATACCAC+AGG 0.602462 6_1:+50764099 Msa0887810:CDS
GAAGCTTTAGAGAATCAATC+GGG 0.602628 6_1:+50765197 Msa0887810:CDS
CAGATGATCATCCTCCTCAA+GGG 0.604430 6_1:-50763441 None:intergenic
ACTTGACCCACCAGCACCAG+TGG 0.607508 6_1:+50763379 Msa0887810:CDS
ACTGACAGTGTAAAATACTT+GGG 0.608198 6_1:+50764235 Msa0887810:intron
ATCACTACCTTCCCTTGAGG+AGG 0.612047 6_1:+50763430 Msa0887810:CDS
GGACATCTAGATCAGTAGGT+TGG 0.615244 6_1:-50763355 None:intergenic
TTATGGGTAGATGTTGCTGG+GGG 0.616713 6_1:+50764930 Msa0887810:CDS
TTACAAAAGTAAGATATAAG+GGG 0.619851 6_1:+50763962 Msa0887810:CDS
AATGGTGATATGCAAGAGGT+GGG 0.621480 6_1:+50764888 Msa0887810:CDS
GGGGAAAGACCTAAATGGAT+GGG 0.621645 6_1:+50763982 Msa0887810:CDS
TCACAAAACAAGACTAATCG+GGG 0.623382 6_1:+50764066 Msa0887810:CDS
TGAGTCAGATGACTTACACC+TGG 0.624603 6_1:-50765005 None:intergenic
TACAAAAGTAAGATATAAGG+GGG 0.626187 6_1:+50763963 Msa0887810:CDS
ACCTTCTCAAGTGACTGCAC+CGG 0.628487 6_1:+50763406 Msa0887810:CDS
TTCTAATGGTGATATGCAAG+AGG 0.631960 6_1:+50764884 Msa0887810:CDS
TTAACCAAAACTAGTGACAC+AGG 0.635406 6_1:+50765485 Msa0887810:three_prime_UTR
TGATCATCCTCCTCAAGGGA+AGG 0.637079 6_1:-50763437 None:intergenic
GAGGAGGATGATCATCTGCA+AGG 0.643850 6_1:+50763446 Msa0887810:CDS
ATGTTGTCCTCCTGAAAATG+AGG 0.644414 6_1:+50765031 Msa0887810:CDS
GTGCAGTCACTTGAGAAGGT+AGG 0.645618 6_1:-50763403 None:intergenic
TCAAGAGCAGGATCATAATG+TGG 0.646262 6_1:-50765263 None:intergenic
GGCATCACTACCTTCCCTTG+AGG 0.646807 6_1:+50763427 Msa0887810:CDS
GTAGGACCACTGGTGCTGGT+GGG 0.647578 6_1:-50763385 None:intergenic
TCATACGCCCAATTGGTCAA+GGG 0.653662 6_1:+50763534 Msa0887810:CDS
TGGTGCTAATGCAATGAGGA+TGG 0.662918 6_1:+50763664 Msa0887810:CDS
ATGGGAGACTCAATATGATG+CGG 0.663539 6_1:+50763888 Msa0887810:CDS
ACACCAACAAACATTAGGTG+AGG 0.663720 6_1:-50765304 None:intergenic
TCACCAATTGAAAGAGAACA+TGG 0.665912 6_1:-50765379 None:intergenic
GTGGTGAGCCTTACGACCTG+TGG 0.668031 6_1:-50764115 None:intergenic
GGTGATATGCAAGAGGTGGG+CGG 0.675105 6_1:+50764891 Msa0887810:CDS
CCATGTCTAGTGCCACGTCG+TGG 0.693029 6_1:-50764134 None:intergenic
AATTGAAAGAGAACATGGTG+AGG 0.697328 6_1:-50765374 None:intergenic
TCGTAAGGCTCACCACGACG+TGG 0.712195 6_1:+50764122 Msa0887810:CDS
AAGATGGTGCTAATGCAATG+AGG 0.735156 6_1:+50763660 Msa0887810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGATCAAAATACATATA+TGG + chr6_1:50764570-50764589 Msa0887810:intron 15.0%
!! ATATGTGAACATATATAATT+TGG + chr6_1:50764680-50764699 Msa0887810:intron 15.0%
!!! TTTAATTTCTACTAATTGTA+TGG + chr6_1:50765430-50765449 Msa0887810:three_prime_UTR 15.0%
!! TAATGATCAAAATACATATA+TGG + chr6_1:50764570-50764589 Msa0887810:intron 15.0%
!! ATATGTGAACATATATAATT+TGG + chr6_1:50764680-50764699 Msa0887810:intron 15.0%
!!! TTTAATTTCTACTAATTGTA+TGG + chr6_1:50765430-50765449 Msa0887810:three_prime_UTR 15.0%
!! TTATAATAGCATCTTTCTTA+GGG - chr6_1:50763508-50763527 None:intergenic 20.0%
!! TTTATAATAGCATCTTTCTT+AGG - chr6_1:50763509-50763528 None:intergenic 20.0%
!! CTTACAAAAGTAAGATATAA+GGG + chr6_1:50763961-50763980 Msa0887810:CDS 20.0%
!! TTACAAAAGTAAGATATAAG+GGG + chr6_1:50763962-50763981 Msa0887810:CDS 20.0%
!! AGATATTAAAGAAATTGGAA+TGG - chr6_1:50764167-50764186 None:intergenic 20.0%
!! GAACTAGATATTAAAGAAAT+TGG - chr6_1:50764172-50764191 None:intergenic 20.0%
!!! AGACATTACTATTTGTTTTA+TGG + chr6_1:50764208-50764227 Msa0887810:intron 20.0%
!! ATATGTGAACATATATATTC+TGG + chr6_1:50764456-50764475 Msa0887810:intron 20.0%
!!! AATAAGTTGTGTTTTTTTAC+AGG + chr6_1:50764815-50764834 Msa0887810:intron 20.0%
!! TTTGGTTAACCAAAAAAATT+TGG - chr6_1:50765474-50765493 None:intergenic 20.0%
!! TTATAATAGCATCTTTCTTA+GGG - chr6_1:50763508-50763527 None:intergenic 20.0%
!! TTTATAATAGCATCTTTCTT+AGG - chr6_1:50763509-50763528 None:intergenic 20.0%
!! CTTACAAAAGTAAGATATAA+GGG + chr6_1:50763961-50763980 Msa0887810:CDS 20.0%
!! TTACAAAAGTAAGATATAAG+GGG + chr6_1:50763962-50763981 Msa0887810:CDS 20.0%
!! AGATATTAAAGAAATTGGAA+TGG - chr6_1:50764167-50764186 None:intergenic 20.0%
!! GAACTAGATATTAAAGAAAT+TGG - chr6_1:50764172-50764191 None:intergenic 20.0%
!!! AGACATTACTATTTGTTTTA+TGG + chr6_1:50764208-50764227 Msa0887810:intron 20.0%
!! ATATGTGAACATATATATTC+TGG + chr6_1:50764456-50764475 Msa0887810:intron 20.0%
!!! AATAAGTTGTGTTTTTTTAC+AGG + chr6_1:50764815-50764834 Msa0887810:intron 20.0%
!! TTTGGTTAACCAAAAAAATT+TGG - chr6_1:50765474-50765493 None:intergenic 20.0%
! TATAATAGCATCTTTCTTAG+GGG - chr6_1:50763507-50763526 None:intergenic 25.0%
!!! TCTATGGTTTGAAACATTTT+CGG + chr6_1:50763742-50763761 Msa0887810:CDS 25.0%
!! AAAGAATAATGTTGCTTCAT+TGG + chr6_1:50763775-50763794 Msa0887810:intron 25.0%
!!! CTATTTTTATATTGTCTGAC+AGG + chr6_1:50763855-50763874 Msa0887810:intron 25.0%
! GCTTACAAAAGTAAGATATA+AGG + chr6_1:50763960-50763979 Msa0887810:CDS 25.0%
! TACAAAAGTAAGATATAAGG+GGG + chr6_1:50763963-50763982 Msa0887810:CDS 25.0%
! AAGATTGATGAGAATTCTAA+TGG + chr6_1:50764870-50764889 Msa0887810:CDS 25.0%
!!! GTTGGTGTTTTAGTTTTTTT+TGG + chr6_1:50765319-50765338 Msa0887810:three_prime_UTR 25.0%
! TATAATAGCATCTTTCTTAG+GGG - chr6_1:50763507-50763526 None:intergenic 25.0%
!!! TCTATGGTTTGAAACATTTT+CGG + chr6_1:50763742-50763761 Msa0887810:CDS 25.0%
!! AAAGAATAATGTTGCTTCAT+TGG + chr6_1:50763775-50763794 Msa0887810:intron 25.0%
!!! CTATTTTTATATTGTCTGAC+AGG + chr6_1:50763855-50763874 Msa0887810:intron 25.0%
! GCTTACAAAAGTAAGATATA+AGG + chr6_1:50763960-50763979 Msa0887810:CDS 25.0%
! TACAAAAGTAAGATATAAGG+GGG + chr6_1:50763963-50763982 Msa0887810:CDS 25.0%
! AAGATTGATGAGAATTCTAA+TGG + chr6_1:50764870-50764889 Msa0887810:CDS 25.0%
!!! GTTGGTGTTTTAGTTTTTTT+TGG + chr6_1:50765319-50765338 Msa0887810:three_prime_UTR 25.0%
TAAAATACCCTTGACCAATT+GGG - chr6_1:50763544-50763563 None:intergenic 30.0%
ATAAAATACCCTTGACCAAT+TGG - chr6_1:50763545-50763564 None:intergenic 30.0%
CTTCACAAAACAAGACTAAT+CGG + chr6_1:50764064-50764083 Msa0887810:CDS 30.0%
TTCACAAAACAAGACTAATC+GGG + chr6_1:50764065-50764084 Msa0887810:CDS 30.0%
ACTGACAGTGTAAAATACTT+GGG + chr6_1:50764235-50764254 Msa0887810:intron 30.0%
CACAAGCACATAATGAATTA+TGG - chr6_1:50764499-50764518 None:intergenic 30.0%
ATGGATAAGTTATGTAAACC+TGG + chr6_1:50764589-50764608 Msa0887810:intron 30.0%
TAACACATATCTCAAGATTG+TGG - chr6_1:50764656-50764675 None:intergenic 30.0%
! CAGAAGCACATAATGAATTA+TGG - chr6_1:50764723-50764742 None:intergenic 30.0%
AGAGAAACGACTTCAATTAT+GGG + chr6_1:50764914-50764933 Msa0887810:CDS 30.0%
GAGGTAATTGTTATGGTATT+GGG + chr6_1:50764961-50764980 Msa0887810:CDS 30.0%
AGGTAATTGTTATGGTATTG+GGG + chr6_1:50764962-50764981 Msa0887810:CDS 30.0%
TTATCTTTCAACATTAGACC+AGG + chr6_1:50764987-50765006 Msa0887810:CDS 30.0%
! ATTTCAATCACCTCATTTTC+AGG - chr6_1:50765044-50765063 None:intergenic 30.0%
CTAAAACACCAACAAACATT+AGG - chr6_1:50765312-50765331 None:intergenic 30.0%
!!! CAGCATATGCCAAATTTTTT+TGG + chr6_1:50765462-50765481 Msa0887810:three_prime_UTR 30.0%
TAAAATACCCTTGACCAATT+GGG - chr6_1:50763544-50763563 None:intergenic 30.0%
ATAAAATACCCTTGACCAAT+TGG - chr6_1:50763545-50763564 None:intergenic 30.0%
CTTCACAAAACAAGACTAAT+CGG + chr6_1:50764064-50764083 Msa0887810:CDS 30.0%
TTCACAAAACAAGACTAATC+GGG + chr6_1:50764065-50764084 Msa0887810:CDS 30.0%
ACTGACAGTGTAAAATACTT+GGG + chr6_1:50764235-50764254 Msa0887810:intron 30.0%
CACAAGCACATAATGAATTA+TGG - chr6_1:50764499-50764518 None:intergenic 30.0%
ATGGATAAGTTATGTAAACC+TGG + chr6_1:50764589-50764608 Msa0887810:intron 30.0%
TAACACATATCTCAAGATTG+TGG - chr6_1:50764656-50764675 None:intergenic 30.0%
! CAGAAGCACATAATGAATTA+TGG - chr6_1:50764723-50764742 None:intergenic 30.0%
AGAGAAACGACTTCAATTAT+GGG + chr6_1:50764914-50764933 Msa0887810:CDS 30.0%
GAGGTAATTGTTATGGTATT+GGG + chr6_1:50764961-50764980 Msa0887810:CDS 30.0%
AGGTAATTGTTATGGTATTG+GGG + chr6_1:50764962-50764981 Msa0887810:CDS 30.0%
TTATCTTTCAACATTAGACC+AGG + chr6_1:50764987-50765006 Msa0887810:CDS 30.0%
! ATTTCAATCACCTCATTTTC+AGG - chr6_1:50765044-50765063 None:intergenic 30.0%
CTAAAACACCAACAAACATT+AGG - chr6_1:50765312-50765331 None:intergenic 30.0%
!!! CAGCATATGCCAAATTTTTT+TGG + chr6_1:50765462-50765481 Msa0887810:three_prime_UTR 30.0%
TATGAAAGAAGACTTGGCTA+AGG + chr6_1:50763225-50763244 Msa0887810:intron 35.0%
!! ATCTAGTTCTTTAGGTTGGA+CGG - chr6_1:50763291-50763310 None:intergenic 35.0%
AGATTTACACCTAGCAAAGA+TGG + chr6_1:50763644-50763663 Msa0887810:intron 35.0%
AAAAGGTTCCTCAAGATCTA+TGG + chr6_1:50763726-50763745 Msa0887810:CDS 35.0%
GTTTCAAACCATAGATCTTG+AGG - chr6_1:50763737-50763756 None:intergenic 35.0%
!! GGTTTGAAACATTTTCGGTA+AGG + chr6_1:50763747-50763766 Msa0887810:intron 35.0%
TCTGACAGGAATATGTTTCA+TGG + chr6_1:50763869-50763888 Msa0887810:intron 35.0%
CTGACAGGAATATGTTTCAT+GGG + chr6_1:50763870-50763889 Msa0887810:intron 35.0%
! CTTTTGTAAGCATGTCAGTA+AGG - chr6_1:50763951-50763970 None:intergenic 35.0%
!! ATGCTGGTCTTCTTGAATAT+TGG + chr6_1:50764016-50764035 Msa0887810:CDS 35.0%
TCACAAAACAAGACTAATCG+GGG + chr6_1:50764066-50764085 Msa0887810:CDS 35.0%
GACTGACAGTGTAAAATACT+TGG + chr6_1:50764234-50764253 Msa0887810:intron 35.0%
TCTCAAATTGCAAGTATTCC+AGG - chr6_1:50764610-50764629 None:intergenic 35.0%
CTCAAGATTGTGGACATATT+CGG - chr6_1:50764646-50764665 None:intergenic 35.0%
TTCTAATGGTGATATGCAAG+AGG + chr6_1:50764884-50764903 Msa0887810:CDS 35.0%
GAGAGAAACGACTTCAATTA+TGG + chr6_1:50764913-50764932 Msa0887810:CDS 35.0%
AATTATGGGTAGATGTTGCT+GGG + chr6_1:50764928-50764947 Msa0887810:CDS 35.0%
TTGTCTCGAGGTAATTGTTA+TGG + chr6_1:50764954-50764973 Msa0887810:CDS 35.0%
CGAGGTAATTGTTATGGTAT+TGG + chr6_1:50764960-50764979 Msa0887810:CDS 35.0%
GAATCAATTCTCTACTGCTA+TGG + chr6_1:50765154-50765173 Msa0887810:CDS 35.0%
!! GGAAGCTTTAGAGAATCAAT+CGG + chr6_1:50765196-50765215 Msa0887810:CDS 35.0%
!! GAAGCTTTAGAGAATCAATC+GGG + chr6_1:50765197-50765216 Msa0887810:CDS 35.0%
ACACAATTGTGAAGTTCGTA+TGG + chr6_1:50765347-50765366 Msa0887810:three_prime_UTR 35.0%
AATTGAAAGAGAACATGGTG+AGG - chr6_1:50765377-50765396 None:intergenic 35.0%
TCACCATGTTCTCTTTCAAT+TGG + chr6_1:50765376-50765395 Msa0887810:three_prime_UTR 35.0%
TCACCAATTGAAAGAGAACA+TGG - chr6_1:50765382-50765401 None:intergenic 35.0%
!!! ATTGGTGACGTGTTATGTTT+TGG + chr6_1:50765394-50765413 Msa0887810:three_prime_UTR 35.0%
!!! TTGGTGACGTGTTATGTTTT+GGG + chr6_1:50765395-50765414 Msa0887810:three_prime_UTR 35.0%
TTAACCAAAACTAGTGACAC+AGG + chr6_1:50765485-50765504 Msa0887810:three_prime_UTR 35.0%
!! ATAACCTGTGTCACTAGTTT+TGG - chr6_1:50765492-50765511 None:intergenic 35.0%
! TAGTGACACAGGTTATGTTT+TGG + chr6_1:50765496-50765515 Msa0887810:three_prime_UTR 35.0%
TATGAAAGAAGACTTGGCTA+AGG + chr6_1:50763225-50763244 Msa0887810:intron 35.0%
!! ATCTAGTTCTTTAGGTTGGA+CGG - chr6_1:50763291-50763310 None:intergenic 35.0%
AGATTTACACCTAGCAAAGA+TGG + chr6_1:50763644-50763663 Msa0887810:intron 35.0%
AAAAGGTTCCTCAAGATCTA+TGG + chr6_1:50763726-50763745 Msa0887810:CDS 35.0%
GTTTCAAACCATAGATCTTG+AGG - chr6_1:50763737-50763756 None:intergenic 35.0%
!! GGTTTGAAACATTTTCGGTA+AGG + chr6_1:50763747-50763766 Msa0887810:intron 35.0%
TCTGACAGGAATATGTTTCA+TGG + chr6_1:50763869-50763888 Msa0887810:intron 35.0%
CTGACAGGAATATGTTTCAT+GGG + chr6_1:50763870-50763889 Msa0887810:intron 35.0%
! CTTTTGTAAGCATGTCAGTA+AGG - chr6_1:50763951-50763970 None:intergenic 35.0%
!! ATGCTGGTCTTCTTGAATAT+TGG + chr6_1:50764016-50764035 Msa0887810:CDS 35.0%
TCACAAAACAAGACTAATCG+GGG + chr6_1:50764066-50764085 Msa0887810:CDS 35.0%
GACTGACAGTGTAAAATACT+TGG + chr6_1:50764234-50764253 Msa0887810:intron 35.0%
TCTCAAATTGCAAGTATTCC+AGG - chr6_1:50764610-50764629 None:intergenic 35.0%
CTCAAGATTGTGGACATATT+CGG - chr6_1:50764646-50764665 None:intergenic 35.0%
TTCTAATGGTGATATGCAAG+AGG + chr6_1:50764884-50764903 Msa0887810:CDS 35.0%
GAGAGAAACGACTTCAATTA+TGG + chr6_1:50764913-50764932 Msa0887810:CDS 35.0%
AATTATGGGTAGATGTTGCT+GGG + chr6_1:50764928-50764947 Msa0887810:CDS 35.0%
TTGTCTCGAGGTAATTGTTA+TGG + chr6_1:50764954-50764973 Msa0887810:CDS 35.0%
CGAGGTAATTGTTATGGTAT+TGG + chr6_1:50764960-50764979 Msa0887810:CDS 35.0%
GAATCAATTCTCTACTGCTA+TGG + chr6_1:50765154-50765173 Msa0887810:CDS 35.0%
!! GGAAGCTTTAGAGAATCAAT+CGG + chr6_1:50765196-50765215 Msa0887810:CDS 35.0%
!! GAAGCTTTAGAGAATCAATC+GGG + chr6_1:50765197-50765216 Msa0887810:CDS 35.0%
ACACAATTGTGAAGTTCGTA+TGG + chr6_1:50765347-50765366 Msa0887810:three_prime_UTR 35.0%
AATTGAAAGAGAACATGGTG+AGG - chr6_1:50765377-50765396 None:intergenic 35.0%
TCACCATGTTCTCTTTCAAT+TGG + chr6_1:50765376-50765395 Msa0887810:three_prime_UTR 35.0%
TCACCAATTGAAAGAGAACA+TGG - chr6_1:50765382-50765401 None:intergenic 35.0%
!!! ATTGGTGACGTGTTATGTTT+TGG + chr6_1:50765394-50765413 Msa0887810:three_prime_UTR 35.0%
!!! TTGGTGACGTGTTATGTTTT+GGG + chr6_1:50765395-50765414 Msa0887810:three_prime_UTR 35.0%
TTAACCAAAACTAGTGACAC+AGG + chr6_1:50765485-50765504 Msa0887810:three_prime_UTR 35.0%
!! ATAACCTGTGTCACTAGTTT+TGG - chr6_1:50765492-50765511 None:intergenic 35.0%
! TAGTGACACAGGTTATGTTT+TGG + chr6_1:50765496-50765515 Msa0887810:three_prime_UTR 35.0%
TTCTTTCATAGCGGCCAATT+CGG - chr6_1:50763215-50763234 None:intergenic 40.0%
AGCCAAGTCTTCTTTCATAG+CGG - chr6_1:50763224-50763243 None:intergenic 40.0%
!! GGACATCTAGTTCTTTAGGT+TGG - chr6_1:50763295-50763314 None:intergenic 40.0%
!! GGTTGGACATCTAGTTCTTT+AGG - chr6_1:50763299-50763318 None:intergenic 40.0%
! ATCTAGATCAGTAGGTTGGA+CGG - chr6_1:50763354-50763373 None:intergenic 40.0%
AGTTGGACATCTAGATCAGT+AGG - chr6_1:50763362-50763381 None:intergenic 40.0%
! AAGATGGTGCTAATGCAATG+AGG + chr6_1:50763660-50763679 Msa0887810:CDS 40.0%
ATGCAATGAGGATGGCTATT+AGG + chr6_1:50763672-50763691 Msa0887810:CDS 40.0%
TGGCTATTAGGCGTCAATTT+CGG + chr6_1:50763684-50763703 Msa0887810:CDS 40.0%
!!! TGTTTTTTCGTGCTGGGAAA+AGG + chr6_1:50763709-50763728 Msa0887810:CDS 40.0%
! GCTTCATTGGTTGAAAACTG+TGG + chr6_1:50763788-50763807 Msa0887810:intron 40.0%
ATGGGAGACTCAATATGATG+CGG + chr6_1:50763888-50763907 Msa0887810:CDS 40.0%
CTCAATATGATGCGGAAATC+AGG + chr6_1:50763896-50763915 Msa0887810:CDS 40.0%
ATAAGGGGGAAAGACCTAAA+TGG + chr6_1:50763977-50763996 Msa0887810:CDS 40.0%
AAACAAGACTAATCGGGGTT+CGG + chr6_1:50764071-50764090 Msa0887810:CDS 40.0%
AAGAGTTCATCAGGATGGAT+AGG - chr6_1:50764264-50764283 None:intergenic 40.0%
CAATCTTCGTTAGTTGAGTC+AGG - chr6_1:50764857-50764876 None:intergenic 40.0%
TAATGGTGATATGCAAGAGG+TGG + chr6_1:50764887-50764906 Msa0887810:CDS 40.0%
AATGGTGATATGCAAGAGGT+GGG + chr6_1:50764888-50764907 Msa0887810:CDS 40.0%
CAATTATGGGTAGATGTTGC+TGG + chr6_1:50764927-50764946 Msa0887810:CDS 40.0%
ATTATGGGTAGATGTTGCTG+GGG + chr6_1:50764929-50764948 Msa0887810:CDS 40.0%
ATGTTGTCCTCCTGAAAATG+AGG + chr6_1:50765031-50765050 Msa0887810:CDS 40.0%
!! TCAATCACCTCATTTTCAGG+AGG - chr6_1:50765041-50765060 None:intergenic 40.0%
GGTGATTGAAATGTTTCGTC+AGG + chr6_1:50765052-50765071 Msa0887810:CDS 40.0%
GATTGAAATGTTTCGTCAGG+AGG + chr6_1:50765055-50765074 Msa0887810:CDS 40.0%
CTACTGCTATGGAAGAATTC+AGG + chr6_1:50765165-50765184 Msa0887810:CDS 40.0%
TTAGAGAATCAATCGGGCAA+TGG + chr6_1:50765203-50765222 Msa0887810:CDS 40.0%
TCAAGAGCAGGATCATAATG+TGG - chr6_1:50765266-50765285 None:intergenic 40.0%
TCTGATTGATCATCAAGAGC+AGG - chr6_1:50765278-50765297 None:intergenic 40.0%
! TGCTCTTGATGATCAATCAG+AGG + chr6_1:50765277-50765296 Msa0887810:CDS 40.0%
TGACCTCACCTAATGTTTGT+TGG + chr6_1:50765301-50765320 Msa0887810:exon 40.0%
ACACCAACAAACATTAGGTG+AGG - chr6_1:50765307-50765326 None:intergenic 40.0%
!!! CGTGTTATGTTTTGGGTTGT+AGG + chr6_1:50765402-50765421 Msa0887810:three_prime_UTR 40.0%
!!! AGGTTATGTTTTGGCGCTTT+AGG + chr6_1:50765505-50765524 Msa0887810:three_prime_UTR 40.0%
TTCTTTCATAGCGGCCAATT+CGG - chr6_1:50763215-50763234 None:intergenic 40.0%
AGCCAAGTCTTCTTTCATAG+CGG - chr6_1:50763224-50763243 None:intergenic 40.0%
!! GGACATCTAGTTCTTTAGGT+TGG - chr6_1:50763295-50763314 None:intergenic 40.0%
!! GGTTGGACATCTAGTTCTTT+AGG - chr6_1:50763299-50763318 None:intergenic 40.0%
! ATCTAGATCAGTAGGTTGGA+CGG - chr6_1:50763354-50763373 None:intergenic 40.0%
AGTTGGACATCTAGATCAGT+AGG - chr6_1:50763362-50763381 None:intergenic 40.0%
! AAGATGGTGCTAATGCAATG+AGG + chr6_1:50763660-50763679 Msa0887810:CDS 40.0%
ATGCAATGAGGATGGCTATT+AGG + chr6_1:50763672-50763691 Msa0887810:CDS 40.0%
TGGCTATTAGGCGTCAATTT+CGG + chr6_1:50763684-50763703 Msa0887810:CDS 40.0%
!!! TGTTTTTTCGTGCTGGGAAA+AGG + chr6_1:50763709-50763728 Msa0887810:CDS 40.0%
! GCTTCATTGGTTGAAAACTG+TGG + chr6_1:50763788-50763807 Msa0887810:intron 40.0%
ATGGGAGACTCAATATGATG+CGG + chr6_1:50763888-50763907 Msa0887810:CDS 40.0%
CTCAATATGATGCGGAAATC+AGG + chr6_1:50763896-50763915 Msa0887810:CDS 40.0%
ATAAGGGGGAAAGACCTAAA+TGG + chr6_1:50763977-50763996 Msa0887810:CDS 40.0%
AAACAAGACTAATCGGGGTT+CGG + chr6_1:50764071-50764090 Msa0887810:CDS 40.0%
AAGAGTTCATCAGGATGGAT+AGG - chr6_1:50764264-50764283 None:intergenic 40.0%
CAATCTTCGTTAGTTGAGTC+AGG - chr6_1:50764857-50764876 None:intergenic 40.0%
TAATGGTGATATGCAAGAGG+TGG + chr6_1:50764887-50764906 Msa0887810:CDS 40.0%
AATGGTGATATGCAAGAGGT+GGG + chr6_1:50764888-50764907 Msa0887810:CDS 40.0%
CAATTATGGGTAGATGTTGC+TGG + chr6_1:50764927-50764946 Msa0887810:CDS 40.0%
ATTATGGGTAGATGTTGCTG+GGG + chr6_1:50764929-50764948 Msa0887810:CDS 40.0%
ATGTTGTCCTCCTGAAAATG+AGG + chr6_1:50765031-50765050 Msa0887810:CDS 40.0%
!! TCAATCACCTCATTTTCAGG+AGG - chr6_1:50765041-50765060 None:intergenic 40.0%
GGTGATTGAAATGTTTCGTC+AGG + chr6_1:50765052-50765071 Msa0887810:CDS 40.0%
GATTGAAATGTTTCGTCAGG+AGG + chr6_1:50765055-50765074 Msa0887810:CDS 40.0%
CTACTGCTATGGAAGAATTC+AGG + chr6_1:50765165-50765184 Msa0887810:CDS 40.0%
TTAGAGAATCAATCGGGCAA+TGG + chr6_1:50765203-50765222 Msa0887810:CDS 40.0%
TCAAGAGCAGGATCATAATG+TGG - chr6_1:50765266-50765285 None:intergenic 40.0%
TCTGATTGATCATCAAGAGC+AGG - chr6_1:50765278-50765297 None:intergenic 40.0%
! TGCTCTTGATGATCAATCAG+AGG + chr6_1:50765277-50765296 Msa0887810:CDS 40.0%
TGACCTCACCTAATGTTTGT+TGG + chr6_1:50765301-50765320 Msa0887810:exon 40.0%
ACACCAACAAACATTAGGTG+AGG - chr6_1:50765307-50765326 None:intergenic 40.0%
!!! CGTGTTATGTTTTGGGTTGT+AGG + chr6_1:50765402-50765421 Msa0887810:three_prime_UTR 40.0%
!!! AGGTTATGTTTTGGCGCTTT+AGG + chr6_1:50765505-50765524 Msa0887810:three_prime_UTR 40.0%
GAGCATTAGCCAAGTCATTG+CGG - chr6_1:50763266-50763285 None:intergenic 45.0%
GGACATCTAGATCAGTAGGT+TGG - chr6_1:50763358-50763377 None:intergenic 45.0%
CAGATGATCATCCTCCTCAA+GGG - chr6_1:50763444-50763463 None:intergenic 45.0%
AAACACACATACCGAGCAAG+AGG + chr6_1:50763481-50763500 Msa0887810:CDS 45.0%
AAGACCATCATACGCCCAAT+TGG + chr6_1:50763527-50763546 Msa0887810:CDS 45.0%
TTGACCAATTGGGCGTATGA+TGG - chr6_1:50763534-50763553 None:intergenic 45.0%
ATCATACGCCCAATTGGTCA+AGG + chr6_1:50763533-50763552 Msa0887810:CDS 45.0%
TCATACGCCCAATTGGTCAA+GGG + chr6_1:50763534-50763553 Msa0887810:CDS 45.0%
GCATTAGCACCATCTTTGCT+AGG - chr6_1:50763656-50763675 None:intergenic 45.0%
! TGGTGCTAATGCAATGAGGA+TGG + chr6_1:50763664-50763683 Msa0887810:CDS 45.0%
GGCTATTAGGCGTCAATTTC+GGG + chr6_1:50763685-50763704 Msa0887810:CDS 45.0%
!!! TTCGGGATGTTTTTTCGTGC+TGG + chr6_1:50763702-50763721 Msa0887810:CDS 45.0%
!!! TCGGGATGTTTTTTCGTGCT+GGG + chr6_1:50763703-50763722 Msa0887810:CDS 45.0%
! CATATTTCTGCAGCAGCCAA+AGG - chr6_1:50763823-50763842 None:intergenic 45.0%
GGGGAAAGACCTAAATGGAT+GGG + chr6_1:50763982-50764001 Msa0887810:CDS 45.0%
AAGACCTAAATGGATGGGAG+AGG + chr6_1:50763987-50764006 Msa0887810:CDS 45.0%
AACAAGACTAATCGGGGTTC+GGG + chr6_1:50764072-50764091 Msa0887810:CDS 45.0%
CCAAGAAGAGTTCATCAGGA+TGG - chr6_1:50764269-50764288 None:intergenic 45.0%
CCATCCTGATGAACTCTTCT+TGG + chr6_1:50764266-50764285 Msa0887810:CDS 45.0%
GTAGCCAAGAAGAGTTCATC+AGG - chr6_1:50764273-50764292 None:intergenic 45.0%
TCTTCTTGGCTACTCGTAAG+AGG + chr6_1:50764280-50764299 Msa0887810:CDS 45.0%
TAAGAGGAAGTCTGGCGATT+GGG + chr6_1:50764296-50764315 Msa0887810:CDS 45.0%
TTATGGGTAGATGTTGCTGG+GGG + chr6_1:50764930-50764949 Msa0887810:CDS 45.0%
TGAGTCAGATGACTTACACC+TGG - chr6_1:50765008-50765027 None:intergenic 45.0%
GAGCATTAGCCAAGTCATTG+CGG - chr6_1:50763266-50763285 None:intergenic 45.0%
GGACATCTAGATCAGTAGGT+TGG - chr6_1:50763358-50763377 None:intergenic 45.0%
CAGATGATCATCCTCCTCAA+GGG - chr6_1:50763444-50763463 None:intergenic 45.0%
AAACACACATACCGAGCAAG+AGG + chr6_1:50763481-50763500 Msa0887810:CDS 45.0%
AAGACCATCATACGCCCAAT+TGG + chr6_1:50763527-50763546 Msa0887810:CDS 45.0%
TTGACCAATTGGGCGTATGA+TGG - chr6_1:50763534-50763553 None:intergenic 45.0%
ATCATACGCCCAATTGGTCA+AGG + chr6_1:50763533-50763552 Msa0887810:CDS 45.0%
TCATACGCCCAATTGGTCAA+GGG + chr6_1:50763534-50763553 Msa0887810:CDS 45.0%
GCATTAGCACCATCTTTGCT+AGG - chr6_1:50763656-50763675 None:intergenic 45.0%
! TGGTGCTAATGCAATGAGGA+TGG + chr6_1:50763664-50763683 Msa0887810:CDS 45.0%
GGCTATTAGGCGTCAATTTC+GGG + chr6_1:50763685-50763704 Msa0887810:CDS 45.0%
!!! TTCGGGATGTTTTTTCGTGC+TGG + chr6_1:50763702-50763721 Msa0887810:CDS 45.0%
!!! TCGGGATGTTTTTTCGTGCT+GGG + chr6_1:50763703-50763722 Msa0887810:CDS 45.0%
! CATATTTCTGCAGCAGCCAA+AGG - chr6_1:50763823-50763842 None:intergenic 45.0%
GGGGAAAGACCTAAATGGAT+GGG + chr6_1:50763982-50764001 Msa0887810:CDS 45.0%
AAGACCTAAATGGATGGGAG+AGG + chr6_1:50763987-50764006 Msa0887810:CDS 45.0%
AACAAGACTAATCGGGGTTC+GGG + chr6_1:50764072-50764091 Msa0887810:CDS 45.0%
CCAAGAAGAGTTCATCAGGA+TGG - chr6_1:50764269-50764288 None:intergenic 45.0%
CCATCCTGATGAACTCTTCT+TGG + chr6_1:50764266-50764285 Msa0887810:CDS 45.0%
GTAGCCAAGAAGAGTTCATC+AGG - chr6_1:50764273-50764292 None:intergenic 45.0%
TCTTCTTGGCTACTCGTAAG+AGG + chr6_1:50764280-50764299 Msa0887810:CDS 45.0%
TAAGAGGAAGTCTGGCGATT+GGG + chr6_1:50764296-50764315 Msa0887810:CDS 45.0%
TTATGGGTAGATGTTGCTGG+GGG + chr6_1:50764930-50764949 Msa0887810:CDS 45.0%
TGAGTCAGATGACTTACACC+TGG - chr6_1:50765008-50765027 None:intergenic 45.0%
GGCCGCTATGAAAGAAGACT+TGG + chr6_1:50763219-50763238 Msa0887810:intron 50.0%
TAGCCAAGTCATTGCGGACA+TGG - chr6_1:50763260-50763279 None:intergenic 50.0%
ACTTGAGAAGGTAGGACCAC+TGG - chr6_1:50763398-50763417 None:intergenic 50.0%
GTGCAGTCACTTGAGAAGGT+AGG - chr6_1:50763406-50763425 None:intergenic 50.0%
ACCTTCTCAAGTGACTGCAC+CGG + chr6_1:50763406-50763425 Msa0887810:CDS 50.0%
TCAAGGGAAGGTAGTGATGC+CGG - chr6_1:50763428-50763447 None:intergenic 50.0%
ATCACTACCTTCCCTTGAGG+AGG + chr6_1:50763430-50763449 Msa0887810:CDS 50.0%
TGATCATCCTCCTCAAGGGA+AGG - chr6_1:50763440-50763459 None:intergenic 50.0%
GCAGATGATCATCCTCCTCA+AGG - chr6_1:50763445-50763464 None:intergenic 50.0%
GAGGAGGATGATCATCTGCA+AGG + chr6_1:50763446-50763465 Msa0887810:CDS 50.0%
TGATCATCTGCAAGGTGTGC+AGG + chr6_1:50763454-50763473 Msa0887810:CDS 50.0%
GATCATCTGCAAGGTGTGCA+GGG + chr6_1:50763455-50763474 Msa0887810:CDS 50.0%
TTTCTTAGGGGCCTCTTGCT+CGG - chr6_1:50763495-50763514 None:intergenic 50.0%
! ACTGTGGTGCCTTGTTCCTT+TGG + chr6_1:50763804-50763823 Msa0887810:intron 50.0%
! GCATGTCAGTAAGGCGCTTT+GGG - chr6_1:50763942-50763961 None:intergenic 50.0%
! AGCATGTCAGTAAGGCGCTT+TGG - chr6_1:50763943-50763962 None:intergenic 50.0%
GGGGGAAAGACCTAAATGGA+TGG + chr6_1:50763981-50764000 Msa0887810:CDS 50.0%
GCATCCTCTCCCATCCATTT+AGG - chr6_1:50763994-50764013 None:intergenic 50.0%
ATGGGAGAGGATGCATATGC+TGG + chr6_1:50764000-50764019 Msa0887810:CDS 50.0%
TGTCCATACCACAGGTCGTA+AGG + chr6_1:50764107-50764126 Msa0887810:CDS 50.0%
GCTACTCGTAAGAGGAAGTC+TGG + chr6_1:50764288-50764307 Msa0887810:CDS 50.0%
GTAAGAGGAAGTCTGGCGAT+TGG + chr6_1:50764295-50764314 Msa0887810:CDS 50.0%
GATCAGCTTCAGCAGCTCTT+TGG - chr6_1:50765115-50765134 None:intergenic 50.0%
! GGAAGAATTCAGGAAGCGCA+TGG + chr6_1:50765175-50765194 Msa0887810:CDS 50.0%
GGCCGCTATGAAAGAAGACT+TGG + chr6_1:50763219-50763238 Msa0887810:intron 50.0%
TAGCCAAGTCATTGCGGACA+TGG - chr6_1:50763260-50763279 None:intergenic 50.0%
ACTTGAGAAGGTAGGACCAC+TGG - chr6_1:50763398-50763417 None:intergenic 50.0%
GTGCAGTCACTTGAGAAGGT+AGG - chr6_1:50763406-50763425 None:intergenic 50.0%
ACCTTCTCAAGTGACTGCAC+CGG + chr6_1:50763406-50763425 Msa0887810:CDS 50.0%
TCAAGGGAAGGTAGTGATGC+CGG - chr6_1:50763428-50763447 None:intergenic 50.0%
ATCACTACCTTCCCTTGAGG+AGG + chr6_1:50763430-50763449 Msa0887810:CDS 50.0%
TGATCATCCTCCTCAAGGGA+AGG - chr6_1:50763440-50763459 None:intergenic 50.0%
GCAGATGATCATCCTCCTCA+AGG - chr6_1:50763445-50763464 None:intergenic 50.0%
GAGGAGGATGATCATCTGCA+AGG + chr6_1:50763446-50763465 Msa0887810:CDS 50.0%
TGATCATCTGCAAGGTGTGC+AGG + chr6_1:50763454-50763473 Msa0887810:CDS 50.0%
GATCATCTGCAAGGTGTGCA+GGG + chr6_1:50763455-50763474 Msa0887810:CDS 50.0%
TTTCTTAGGGGCCTCTTGCT+CGG - chr6_1:50763495-50763514 None:intergenic 50.0%
! ACTGTGGTGCCTTGTTCCTT+TGG + chr6_1:50763804-50763823 Msa0887810:intron 50.0%
! GCATGTCAGTAAGGCGCTTT+GGG - chr6_1:50763942-50763961 None:intergenic 50.0%
! AGCATGTCAGTAAGGCGCTT+TGG - chr6_1:50763943-50763962 None:intergenic 50.0%
GGGGGAAAGACCTAAATGGA+TGG + chr6_1:50763981-50764000 Msa0887810:CDS 50.0%
GCATCCTCTCCCATCCATTT+AGG - chr6_1:50763994-50764013 None:intergenic 50.0%
ATGGGAGAGGATGCATATGC+TGG + chr6_1:50764000-50764019 Msa0887810:CDS 50.0%
TGTCCATACCACAGGTCGTA+AGG + chr6_1:50764107-50764126 Msa0887810:CDS 50.0%
GCTACTCGTAAGAGGAAGTC+TGG + chr6_1:50764288-50764307 Msa0887810:CDS 50.0%
GTAAGAGGAAGTCTGGCGAT+TGG + chr6_1:50764295-50764314 Msa0887810:CDS 50.0%
GATCAGCTTCAGCAGCTCTT+TGG - chr6_1:50765115-50765134 None:intergenic 50.0%
! GGAAGAATTCAGGAAGCGCA+TGG + chr6_1:50765175-50765194 Msa0887810:CDS 50.0%
TGCTCAGCTTCGTGCCGAAT+TGG + chr6_1:50763198-50763217 Msa0887810:intron 55.0%
ACGCCATGTCCGCAATGACT+TGG + chr6_1:50763254-50763273 Msa0887810:intron 55.0%
! AGATCAGTAGGTTGGACGGC+TGG - chr6_1:50763350-50763369 None:intergenic 55.0%
GGCATCACTACCTTCCCTTG+AGG + chr6_1:50763427-50763446 Msa0887810:CDS 55.0%
CTGCAGCAGCCAAAGGAACA+AGG - chr6_1:50763816-50763835 None:intergenic 55.0%
ACTAATCGGGGTTCGGGCAA+AGG + chr6_1:50764078-50764097 Msa0887810:CDS 55.0%
GAGCCTTACGACCTGTGGTA+TGG - chr6_1:50764113-50764132 None:intergenic 55.0%
!! GATTGGGTTGACAGTCGTGC+TGG + chr6_1:50764312-50764331 Msa0887810:CDS 55.0%
GGTGATATGCAAGAGGTGGG+CGG + chr6_1:50764891-50764910 Msa0887810:CDS 55.0%
TGCTCAGCTTCGTGCCGAAT+TGG + chr6_1:50763198-50763217 Msa0887810:intron 55.0%
ACGCCATGTCCGCAATGACT+TGG + chr6_1:50763254-50763273 Msa0887810:intron 55.0%
! AGATCAGTAGGTTGGACGGC+TGG - chr6_1:50763350-50763369 None:intergenic 55.0%
GGCATCACTACCTTCCCTTG+AGG + chr6_1:50763427-50763446 Msa0887810:CDS 55.0%
CTGCAGCAGCCAAAGGAACA+AGG - chr6_1:50763816-50763835 None:intergenic 55.0%
ACTAATCGGGGTTCGGGCAA+AGG + chr6_1:50764078-50764097 Msa0887810:CDS 55.0%
GAGCCTTACGACCTGTGGTA+TGG - chr6_1:50764113-50764132 None:intergenic 55.0%
!! GATTGGGTTGACAGTCGTGC+TGG + chr6_1:50764312-50764331 Msa0887810:CDS 55.0%
GGTGATATGCAAGAGGTGGG+CGG + chr6_1:50764891-50764910 Msa0887810:CDS 55.0%
! AGTAGGTTGGACGGCTGGTC+GGG - chr6_1:50763345-50763364 None:intergenic 60.0%
! CAGTAGGTTGGACGGCTGGT+CGG - chr6_1:50763346-50763365 None:intergenic 60.0%
!! CTGGTGCTGGTGGGTCAAGT+TGG - chr6_1:50763379-50763398 None:intergenic 60.0%
ACTTGACCCACCAGCACCAG+TGG + chr6_1:50763379-50763398 Msa0887810:CDS 60.0%
!! GTAGGACCACTGGTGCTGGT+GGG - chr6_1:50763388-50763407 None:intergenic 60.0%
GAAGGTAGGACCACTGGTGC+TGG - chr6_1:50763392-50763411 None:intergenic 60.0%
GCCGGTGCAGTCACTTGAGA+AGG - chr6_1:50763410-50763429 None:intergenic 60.0%
AATCGGGGTTCGGGCAAAGG+AGG + chr6_1:50764081-50764100 Msa0887810:CDS 60.0%
GGAGGAGCTGTCCATACCAC+AGG + chr6_1:50764099-50764118 Msa0887810:CDS 60.0%
GTGGTGAGCCTTACGACCTG+TGG - chr6_1:50764118-50764137 None:intergenic 60.0%
TCGTAAGGCTCACCACGACG+TGG + chr6_1:50764122-50764141 Msa0887810:CDS 60.0%
CCATGTCTAGTGCCACGTCG+TGG - chr6_1:50764137-50764156 None:intergenic 60.0%
CCACGACGTGGCACTAGACA+TGG + chr6_1:50764134-50764153 Msa0887810:CDS 60.0%
GTTGCTGGGGGTTTGTCTCG+AGG + chr6_1:50764942-50764961 Msa0887810:CDS 60.0%
! AGTAGGTTGGACGGCTGGTC+GGG - chr6_1:50763345-50763364 None:intergenic 60.0%
! CAGTAGGTTGGACGGCTGGT+CGG - chr6_1:50763346-50763365 None:intergenic 60.0%
!! CTGGTGCTGGTGGGTCAAGT+TGG - chr6_1:50763379-50763398 None:intergenic 60.0%
ACTTGACCCACCAGCACCAG+TGG + chr6_1:50763379-50763398 Msa0887810:CDS 60.0%
!! GTAGGACCACTGGTGCTGGT+GGG - chr6_1:50763388-50763407 None:intergenic 60.0%
GAAGGTAGGACCACTGGTGC+TGG - chr6_1:50763392-50763411 None:intergenic 60.0%
GCCGGTGCAGTCACTTGAGA+AGG - chr6_1:50763410-50763429 None:intergenic 60.0%
AATCGGGGTTCGGGCAAAGG+AGG + chr6_1:50764081-50764100 Msa0887810:CDS 60.0%
GGAGGAGCTGTCCATACCAC+AGG + chr6_1:50764099-50764118 Msa0887810:CDS 60.0%
GTGGTGAGCCTTACGACCTG+TGG - chr6_1:50764118-50764137 None:intergenic 60.0%
TCGTAAGGCTCACCACGACG+TGG + chr6_1:50764122-50764141 Msa0887810:CDS 60.0%
CCATGTCTAGTGCCACGTCG+TGG - chr6_1:50764137-50764156 None:intergenic 60.0%
CCACGACGTGGCACTAGACA+TGG + chr6_1:50764134-50764153 Msa0887810:CDS 60.0%
GTTGCTGGGGGTTTGTCTCG+AGG + chr6_1:50764942-50764961 Msa0887810:CDS 60.0%
! GGGAGGTTGGATGGCTGGTC+GGG - chr6_1:50763324-50763343 None:intergenic 65.0%
GGGGAGGTTGGATGGCTGGT+CGG - chr6_1:50763325-50763344 None:intergenic 65.0%
! GTAGGTTGGACGGCTGGTCG+GGG - chr6_1:50763344-50763363 None:intergenic 65.0%
! GGTAGGACCACTGGTGCTGG+TGG - chr6_1:50763389-50763408 None:intergenic 65.0%
! GGGAGGTTGGATGGCTGGTC+GGG - chr6_1:50763324-50763343 None:intergenic 65.0%
GGGGAGGTTGGATGGCTGGT+CGG - chr6_1:50763325-50763344 None:intergenic 65.0%
! GTAGGTTGGACGGCTGGTCG+GGG - chr6_1:50763344-50763363 None:intergenic 65.0%
! GGTAGGACCACTGGTGCTGG+TGG - chr6_1:50763389-50763408 None:intergenic 65.0%
! GGATGGCTGGTCGGGCAGGT+TGG - chr6_1:50763316-50763335 None:intergenic 70.0%
! GGTTGGATGGCTGGTCGGGC+AGG - chr6_1:50763320-50763339 None:intergenic 70.0%
GGTCGGGGAGGTTGGATGGC+TGG - chr6_1:50763329-50763348 None:intergenic 70.0%
! GGCTGGTCGGGGAGGTTGGA+TGG - chr6_1:50763333-50763352 None:intergenic 70.0%
GGCTGCAGCAGCACGTGCTG+AGG + chr6_1:50765076-50765095 Msa0887810:CDS 70.0%
! GGATGGCTGGTCGGGCAGGT+TGG - chr6_1:50763316-50763335 None:intergenic 70.0%
! GGTTGGATGGCTGGTCGGGC+AGG - chr6_1:50763320-50763339 None:intergenic 70.0%
GGTCGGGGAGGTTGGATGGC+TGG - chr6_1:50763329-50763348 None:intergenic 70.0%
! GGCTGGTCGGGGAGGTTGGA+TGG - chr6_1:50763333-50763352 None:intergenic 70.0%
GGCTGCAGCAGCACGTGCTG+AGG + chr6_1:50765076-50765095 Msa0887810:CDS 70.0%
! GGACGGCTGGTCGGGGAGGT+TGG - chr6_1:50763337-50763356 None:intergenic 75.0%
! GGTTGGACGGCTGGTCGGGG+AGG - chr6_1:50763341-50763360 None:intergenic 75.0%
! GGACGGCTGGTCGGGGAGGT+TGG - chr6_1:50763337-50763356 None:intergenic 75.0%
! GGTTGGACGGCTGGTCGGGG+AGG - chr6_1:50763341-50763360 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 50763175 50765598 50763175 ID=Msa0887810;Name=Msa0887810
chr6_1 mRNA 50763175 50765598 50763175 ID=Msa0887810-mRNA-1;Parent=Msa0887810;Name=Msa0887810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.8|0.66|0.83|1|1|6|285|425
chr6_1 exon 50763175 50763208 50763175 ID=Msa0887810-mRNA-1:exon:10361;Parent=Msa0887810-mRNA-1
chr6_1 exon 50763288 50763555 50763288 ID=Msa0887810-mRNA-1:exon:10362;Parent=Msa0887810-mRNA-1
chr6_1 exon 50763646 50763763 50763646 ID=Msa0887810-mRNA-1:exon:10363;Parent=Msa0887810-mRNA-1
chr6_1 exon 50763877 50764155 50763877 ID=Msa0887810-mRNA-1:exon:10364;Parent=Msa0887810-mRNA-1
chr6_1 exon 50764243 50764344 50764243 ID=Msa0887810-mRNA-1:exon:10365;Parent=Msa0887810-mRNA-1
chr6_1 exon 50764837 50765598 50764837 ID=Msa0887810-mRNA-1:exon:10366;Parent=Msa0887810-mRNA-1
chr6_1 CDS 50763175 50763208 50763175 ID=Msa0887810-mRNA-1:cds;Parent=Msa0887810-mRNA-1
chr6_1 CDS 50763288 50763555 50763288 ID=Msa0887810-mRNA-1:cds;Parent=Msa0887810-mRNA-1
chr6_1 CDS 50763646 50763763 50763646 ID=Msa0887810-mRNA-1:cds;Parent=Msa0887810-mRNA-1
chr6_1 CDS 50763877 50764155 50763877 ID=Msa0887810-mRNA-1:cds;Parent=Msa0887810-mRNA-1
chr6_1 CDS 50764243 50764344 50764243 ID=Msa0887810-mRNA-1:cds;Parent=Msa0887810-mRNA-1
chr6_1 CDS 50764837 50765313 50764837 ID=Msa0887810-mRNA-1:cds;Parent=Msa0887810-mRNA-1
chr6_1 three_prime_UTR 50765314 50765598 50765314 ID=Msa0887810-mRNA-1:three_prime_utr;Parent=Msa0887810-mRNA-1
Gene Sequence

>Msa0887810

ATGGCTAACTTTGAAGAAGAAAATGCTCAGCTTCCCGTCCAACCTAAAGAACTAGATGTCCAACCTGCCCGACCAGCCATCCAACCTCCCCGACCAGCCGTCCAACCTACTGATCTAGATGTCCAACTTGACCCACCAGCACCAGTGGTCCTACCTTCTCAAGTGACTGCACCGGCATCACTACCTTCCCTTGAGGAGGATGATCATCTGCAAGGTGTGCAGGGAGAAAACACACATACCGAGCAAGAGGCCCCTAAGAAAGATGCTATTATAAAGACCATCATACGCCCAATTGGTCAAGGATTTACACCTAGCAAAGATGGTGCTAATGCAATGAGGATGGCTATTAGGCGTCAATTTCGGGATGTTTTTTCGTGCTGGGAAAAGGTTCCTCAAGATCTATGGTTTGAAACATTTTCGGAATATGTTTCATGGGAGACTCAATATGATGCGGAAATCAGGAGCATATTTGATAAAAAGTGCCCAAAGCGCCTTACTGACATGCTTACAAAAGTAAGATATAAGGGGGAAAGACCTAAATGGATGGGAGAGGATGCATATGCTGGTCTTCTTGAATATTGGAAGAGTGACAAATTCAACAAGCTTTCTTCACAAAACAAGACTAATCGGGGTTCGGGCAAAGGAGGAGCTGTCCATACCACAGGTCGTAAGGCTCACCACGACGTGGCACTAGACATGTGTAAAATACTTGGGCGACCTATCCATCCTGATGAACTCTTCTTGGCTACTCGTAAGAGGAAGTCTGGCGATTGGGTTGACAGTCGTGCTGGAAAAACTTATGATAACTATCAGCAGCGCCTGACTCAACTAACGAAGATTGATGAGAATTCTAATGGTGATATGCAAGAGGTGGGCGGAGAGAAACGACTTCAATTATGGGTAGATGTTGCTGGGGGTTTGTCTCGAGGTAATTGTTATGGTATTGGGGCTTTATCTTTCAACATTAGACCAGGTGTAAGTCATCTGACTCAAGAATGTTGTCCTCCTGAAAATGAGGTGATTGAAATGTTTCGTCAGGAGGCTGCAGCAGCACGTGCTGAGGCTGCTGCAGCGAACCAAAGAGCTGCTGAAGCTGATCAGCGTTCTCAACAGCTAGAGAATCAATTCTCTACTGCTATGGAAGAATTCAGGAAGCGCATGGAAGCTTTAGAGAATCAATCGGGCAATGGTTCTTGTAGTACTATTCGATCTCATCACAGTCAACATCCACATTATGATCCTGCTCTTGATGATCAATCAGAGGATGACCTCACCTAA
Protein sequence

>Msa0887810

MANFEEENAQLPVQPKELDVQPARPAIQPPRPAVQPTDLDVQLDPPAPVVLPSQVTAPASLPSLEEDDHLQGVQGENTHTEQEAPKKDAIIKTIIRPIGQGFTPSKDGANAMRMAIRRQFRDVFSCWEKVPQDLWFETFSEYVSWETQYDAEIRSIFDKKCPKRLTDMLTKVRYKGERPKWMGEDAYAGLLEYWKSDKFNKLSSQNKTNRGSGKGGAVHTTGRKAHHDVALDMCKILGRPIHPDELFLATRKRKSGDWVDSRAGKTYDNYQQRLTQLTKIDENSNGDMQEVGGEKRLQLWVDVAGGLSRGNCYGIGALSFNIRPGVSHLTQECCPPENEVIEMFRQEAAAARAEAAAANQRAAEADQRSQQLENQFSTAMEEFRKRMEALENQSGNGSCSTIRSHHSQHPHYDPALDDQSEDDLT*