AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0917830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0917830 MtrunA17_Chr4g0039731 46.291 337 152 8 152 464 161 492 4.94e-73 245
Msa0917830 MtrunA17_Chr3g0086081 33.624 229 134 4 172 389 4 225 7.71e-29 116
Msa0917830 MtrunA17_Chr4g0010341 30.081 246 120 6 153 387 181 385 1.89e-22 99.8
Msa0917830 MtrunA17_Chr8g0345501 25.574 305 198 9 161 438 413 715 4.75e-22 99.4
Msa0917830 MtrunA17_Chr1g0168171 56.962 79 30 2 222 296 1 79 3.47e-21 87.8
Msa0917830 MtrunA17_Chr4g0025081 30.435 253 149 10 160 387 232 482 2.17e-20 94.0
Msa0917830 MtrunA17_Chr1g0176161 26.911 327 209 12 159 457 158 482 4.52e-20 92.8
Msa0917830 MtrunA17_Chr2g0322881 23.494 332 203 15 161 452 337 657 2.57e-12 68.9
Msa0917830 MtrunA17_Chr1g0179631 23.881 335 222 10 138 455 492 810 7.09e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 157 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAATAGCATCTTTCTT+AGG 0.145906 6_2:+43385925 None:intergenic
GGCTATTAGGCGTCAATTTC+GGG 0.176665 6_2:-43385746 Msa0917830:CDS
GGACCACAGTTGATGTCTTT+TGG 0.233233 6_2:+43386202 None:intergenic
ACACAATTGTGAAGTTCTTA+TGG 0.250119 6_2:-43384083 Msa0917830:three_prime_UTR
GGTTGGACATCTAGTTCTTT+AGG 0.256896 6_2:+43386135 None:intergenic
TGGCTATTAGGCGTCAATTT+CGG 0.262175 6_2:-43385747 Msa0917830:CDS
GAGAGAAACGACTTCAATTA+TGG 0.263558 6_2:-43384517 Msa0917830:CDS
ATGCTGGTCTTCTTGAATAT+TGG 0.281800 6_2:-43385415 Msa0917830:CDS
ATAACCTGTGTCACTAGTTT+TGG 0.298958 6_2:+43383941 None:intergenic
CTCAATATGATGCGGAAATC+AGG 0.302840 6_2:-43385535 Msa0917830:CDS
CCATCCTGATGAACTCTTCT+TGG 0.306942 6_2:-43385165 Msa0917830:CDS
ATTGGTGACGTGTTATGTTT+TGG 0.308723 6_2:-43384036 Msa0917830:three_prime_UTR
GCATCCTCTCCCATCCATTT+AGG 0.314255 6_2:+43385440 None:intergenic
CTTCACAAAACAAGACTAAT+CGG 0.320914 6_2:-43385367 Msa0917830:CDS
CGAGGTAATTGTTATGGTAC+TGG 0.324310 6_2:-43384470 Msa0917830:CDS
AGTAGGTTGGACGGCTGGTC+GGG 0.331759 6_2:+43386089 None:intergenic
GATCAGCTTCAGCAGCTCTT+TGG 0.342233 6_2:+43384318 None:intergenic
ATAAAATACCCTTGACCAAT+TGG 0.342640 6_2:+43385889 None:intergenic
TTTAATTTCTACTAATTGTA+TGG 0.351738 6_2:-43384000 Msa0917830:three_prime_UTR
AAAAGGTTCCTCAAGATCTA+TGG 0.354768 6_2:-43385705 Msa0917830:CDS
CTACTGCTATGGAAGAATTC+AGG 0.367453 6_2:-43384265 Msa0917830:CDS
ATGCAATGAGGATGGCTATT+AGG 0.367943 6_2:-43385759 Msa0917830:CDS
GTTGGTGAGGTGGGCTCAAC+TGG 0.370950 6_2:+43386228 None:intergenic
TTATAATAGCATCTTTCTTA+GGG 0.373281 6_2:+43385926 None:intergenic
GTTGGCTACAACAAGTTTCC+TGG 0.374689 6_2:+43386284 None:intergenic
GCATGTCAGTAAGGCGCTTT+GGG 0.375371 6_2:+43385492 None:intergenic
TTGTCTCGAGGTAATTGTTA+TGG 0.375766 6_2:-43384476 Msa0917830:CDS
CAATTATGGGTAGATGTTGC+TGG 0.379900 6_2:-43384503 Msa0917830:CDS
GGGAAGTGGGATGGCTGGTC+GGG 0.380978 6_2:+43386173 None:intergenic
TGGACGACTGGTCGGGGAAG+TGG 0.384480 6_2:+43386159 None:intergenic
GGGAGGTTGAATGGCTGGTC+GGG 0.391578 6_2:+43386110 None:intergenic
TTTAGGTTGGACGACTGGTC+GGG 0.394842 6_2:+43386152 None:intergenic
AGCATGTCAGTAAGGCGCTT+TGG 0.396055 6_2:+43385491 None:intergenic
AACAAGACTAATCGGGGTTC+GGG 0.400300 6_2:-43385359 Msa0917830:CDS
AATTATGGGTAGATGTTGCT+GGG 0.404667 6_2:-43384502 Msa0917830:CDS
TCACCATGTTCTCTTTCAAT+TGG 0.408880 6_2:-43384054 Msa0917830:three_prime_UTR
TAGTGACACAGGTTATGTTT+TGG 0.410283 6_2:-43383934 Msa0917830:three_prime_UTR
GGTTGAATGGCTGGTCGGGC+AGG 0.414174 6_2:+43386114 None:intergenic
AGTGGGATGGCTGGTCGGGC+AGG 0.414174 6_2:+43386177 None:intergenic
CTAAAACACCAACAAACATT+AGG 0.423848 6_2:+43384121 None:intergenic
GACTGACAGTGTAAAATACT+TGG 0.426930 6_2:-43385197 Msa0917830:intron
TGATCATCTGCAAGGTGTGC+AGG 0.431034 6_2:-43385977 Msa0917830:CDS
TCTGACAGGAATATGTTTCA+TGG 0.431668 6_2:-43385562 Msa0917830:intron
TTCACAAAACAAGACTAATC+GGG 0.432488 6_2:-43385366 Msa0917830:CDS
AAACAAGACTAATCGGGGTT+CGG 0.436178 6_2:-43385360 Msa0917830:CDS
GGTCGGGGAAGTGGGATGGC+TGG 0.439301 6_2:+43386168 None:intergenic
GGCTGGTCGGGGAGGTTGAA+TGG 0.444848 6_2:+43386101 None:intergenic
CAATCTTCGTTAGTTGAGTT+AGG 0.445663 6_2:+43384576 None:intergenic
GGGGAAGTGGGATGGCTGGT+CGG 0.448275 6_2:+43386172 None:intergenic
AAGATTGATGAGAATTCTAA+TGG 0.450583 6_2:-43384560 Msa0917830:CDS
GGATGGCTGGTCGGGCAGGT+TGG 0.452958 6_2:+43386181 None:intergenic
TTTCTTAGGGGCCTCTTGCT+CGG 0.456169 6_2:+43385939 None:intergenic
GGCTGCAGCAGCACGTGCTG+AGG 0.459336 6_2:-43384354 Msa0917830:CDS
ACTAATCGGGGTTCGGGCAA+AGG 0.464856 6_2:-43385353 Msa0917830:CDS
TAAGAGGAAGTCTGGCGATT+GGG 0.469252 6_2:-43385135 Msa0917830:CDS
GTAGCCAAGAAGAGTTCATC+AGG 0.473619 6_2:+43385161 None:intergenic
GGTCGGGGAGGTTGAATGGC+TGG 0.475707 6_2:+43386105 None:intergenic
GAATGGCTGGTCGGGCAGGT+TGG 0.475842 6_2:+43386118 None:intergenic
GGTGATTGAAATGTTTCGTC+AGG 0.476769 6_2:-43384378 Msa0917830:CDS
TACCTTTGAACGAGCATTGG+TGG 0.478671 6_2:+43386335 None:intergenic
TAAAATACCCTTGACCAATT+GGG 0.480390 6_2:+43385890 None:intergenic
AGATTTACACCTAGCAAAGA+TGG 0.482324 6_2:-43385787 Msa0917830:CDS
AGAGAAACGACTTCAATTAT+GGG 0.482595 6_2:-43384516 Msa0917830:CDS
GAGGTAATTGTTATGGTACT+GGG 0.483970 6_2:-43384469 Msa0917830:CDS
CAGTAGGTTGGACGGCTGGT+CGG 0.485901 6_2:+43386088 None:intergenic
GGACGACTGGTCGGGGAAGT+GGG 0.487337 6_2:+43386160 None:intergenic
GTAGGTTGGACGGCTGGTCG+GGG 0.489707 6_2:+43386090 None:intergenic
GACTGGTCGGGGAAGTGGGA+TGG 0.491772 6_2:+43386164 None:intergenic
TCTTCTTGGCTACTCGTAAG+AGG 0.493331 6_2:-43385151 Msa0917830:CDS
TAATACCTTTGAACGAGCAT+TGG 0.494955 6_2:+43386332 None:intergenic
GCTACTCGTAAGAGGAAGTC+TGG 0.496029 6_2:-43385143 Msa0917830:CDS
GTTGCTTTAGCAAGATATCC+AGG 0.497813 6_2:+43386306 None:intergenic
AAGACCATCATACGCCCAAT+TGG 0.499185 6_2:-43385904 Msa0917830:CDS
GGGGAGGTTGAATGGCTGGT+CGG 0.499474 6_2:+43386109 None:intergenic
GGAAGCTTTAGAGAATCAAT+CGG 0.509751 6_2:-43384234 Msa0917830:CDS
GGACATCTAGTTCTTTAGGT+TGG 0.514643 6_2:+43386139 None:intergenic
AGATCAGTAGGTTGGACGGC+TGG 0.515008 6_2:+43386084 None:intergenic
GCATTAGCACCATCTTTGCT+AGG 0.518356 6_2:+43385778 None:intergenic
GAATCAATTCTCTACTGCTA+TGG 0.520159 6_2:-43384276 Msa0917830:CDS
CTTTAGGTTGGACGACTGGT+CGG 0.523584 6_2:+43386151 None:intergenic
AGTTCTTTAGGTTGGACGAC+TGG 0.524636 6_2:+43386147 None:intergenic
TTGACCAATTGGGCGTATGA+TGG 0.526388 6_2:+43385900 None:intergenic
GAGGTGGGCTCAACTGGCCG+TGG 0.535224 6_2:+43386234 None:intergenic
GCAGATGATCATCCTCCTCA+AGG 0.541005 6_2:+43385989 None:intergenic
AAGAGTTCATCAGGATGGAT+AGG 0.544009 6_2:+43385170 None:intergenic
CTGACAGGAATATGTTTCAT+GGG 0.544185 6_2:-43385561 Msa0917830:intron
GTAAGAGGAAGTCTGGCGAT+TGG 0.544893 6_2:-43385136 Msa0917830:CDS
CGTTCAAAGGTATTACAACC+TGG 0.548147 6_2:-43386324 Msa0917830:CDS
ATCATACGCCCAATTGGTCA+AGG 0.549638 6_2:-43385898 Msa0917830:CDS
TGTCCATACCACAGGTCGTA+AGG 0.551241 6_2:-43385324 Msa0917830:CDS
GGTAGGACCACTGGTGCTGG+TGG 0.551590 6_2:+43386045 None:intergenic
TGACCTCACCTAATGTTTGT+TGG 0.552315 6_2:-43384129 Msa0917830:three_prime_UTR
TTAGGTTGGACGACTGGTCG+GGG 0.552573 6_2:+43386153 None:intergenic
GTTTCAAACCATAGATCTTG+AGG 0.552921 6_2:+43385697 None:intergenic
AAACACACATACCGAGCAAG+AGG 0.553474 6_2:-43385950 Msa0917830:CDS
TCAAGGGAAGGTAGTGATGC+CGG 0.557311 6_2:+43386006 None:intergenic
TCTGATTGATCATCAAGAGC+AGG 0.560143 6_2:+43384155 None:intergenic
TTCCACCAATGCTCGTTCAA+AGG 0.564669 6_2:-43386337 Msa0917830:CDS
GGAAGAATTCAGGAAGTGCA+TGG 0.565201 6_2:-43384255 Msa0917830:CDS
AGTTGGACATCTAGATCAGT+AGG 0.566990 6_2:+43386072 None:intergenic
AATCGGGGTTCGGGCAAAGG+AGG 0.570234 6_2:-43385350 Msa0917830:CDS
CTGGTGCTGGTGGGTCAAGT+TGG 0.570292 6_2:+43386055 None:intergenic
TTAGAGAATCAATCGGGCGA+TGG 0.571971 6_2:-43384227 Msa0917830:CDS
GAGCCTTACGACCTGTGGTA+TGG 0.575889 6_2:+43385321 None:intergenic
ACTTGAGAAGGTAGGACCAC+TGG 0.576985 6_2:+43386036 None:intergenic
GGTTGGACGGCTGGTCGGGG+AGG 0.577584 6_2:+43386093 None:intergenic
CCAAGAAGAGTTCATCAGGA+TGG 0.580522 6_2:+43385165 None:intergenic
CCACGACGTGGCACTAGACA+TGG 0.582481 6_2:-43385297 Msa0917830:intron
GAAGGTAGGACCACTGGTGC+TGG 0.582738 6_2:+43386042 None:intergenic
GATCATCTGCAAGGTGTGCA+GGG 0.585289 6_2:-43385976 Msa0917830:CDS
GCCGGTGCAGTCACTTGAGA+AGG 0.587439 6_2:+43386024 None:intergenic
GATTGAAATGTTTCGTCAGG+AGG 0.588208 6_2:-43384375 Msa0917830:CDS
ATCTAGATCAGTAGGTTGGA+CGG 0.588695 6_2:+43386080 None:intergenic
TATAATAGCATCTTTCTTAG+GGG 0.592529 6_2:+43385927 None:intergenic
ATGGGAGAGGATGCATATGC+TGG 0.593184 6_2:-43385431 Msa0917830:CDS
GATTGGGTTGACAGTCGTGC+TGG 0.597801 6_2:-43385119 Msa0917830:CDS
TGCTCTTGATGATCAATCAG+AGG 0.598343 6_2:-43384153 Msa0917830:three_prime_UTR
TTATCTTTCAACATTAGACC+AGG 0.600042 6_2:-43384443 Msa0917830:CDS
ATTATGGGTAGATGTTGCTG+GGG 0.600229 6_2:-43384501 Msa0917830:CDS
AAGACCTAAATGGATGGGAG+AGG 0.600614 6_2:-43385444 Msa0917830:CDS
GATATCTTGCTAAAGCAACC+AGG 0.601805 6_2:-43386302 Msa0917830:CDS
GGAGGAGCTGTCCATACCAC+AGG 0.602462 6_2:-43385332 Msa0917830:CDS
GAAGCTTTAGAGAATCAATC+GGG 0.602628 6_2:-43384233 Msa0917830:CDS
CAGATGATCATCCTCCTCAA+GGG 0.604430 6_2:+43385990 None:intergenic
ACTTGACCCACCAGCACCAG+TGG 0.607508 6_2:-43386052 Msa0917830:CDS
ACTGACAGTGTAAAATACTT+GGG 0.608198 6_2:-43385196 Msa0917830:intron
AAAATGACTAGACAATGTCA+TGG 0.611773 6_2:-43386378 Msa0917830:CDS
ATCACTACCTTCCCTTGAGG+AGG 0.612047 6_2:-43386001 Msa0917830:CDS
GGACATCTAGATCAGTAGGT+TGG 0.615244 6_2:+43386076 None:intergenic
TTATGGGTAGATGTTGCTGG+GGG 0.616713 6_2:-43384500 Msa0917830:CDS
GGGGAAAGACCTAAATGGAT+GGG 0.621645 6_2:-43385449 Msa0917830:CDS
TAATGGTGATATGCAAGAGG+TGG 0.623058 6_2:-43384543 Msa0917830:CDS
TCACAAAACAAGACTAATCG+GGG 0.623382 6_2:-43385365 Msa0917830:CDS
ATGTTGTCCTCTTGAAAATG+AGG 0.624534 6_2:-43384399 Msa0917830:CDS
TGAGTCAGATGACTTACACC+TGG 0.624603 6_2:+43384425 None:intergenic
ACCTTCTCAAGTGACTGCAC+CGG 0.628487 6_2:-43386025 Msa0917830:CDS
TTCTAATGGTGATATGCAAG+AGG 0.631960 6_2:-43384546 Msa0917830:CDS
GGTGATATGCAAGAGGTGGA+CGG 0.632300 6_2:-43384539 Msa0917830:CDS
TTAACCAAAACTAGTGACAC+AGG 0.635406 6_2:-43383945 Msa0917830:three_prime_UTR
TGATCATCCTCCTCAAGGGA+AGG 0.637079 6_2:+43385994 None:intergenic
GAGGAGGATGATCATCTGCA+AGG 0.643850 6_2:-43385985 Msa0917830:CDS
GTGCAGTCACTTGAGAAGGT+AGG 0.645618 6_2:+43386028 None:intergenic
TCAAGAGCAGGATCATAATG+TGG 0.646262 6_2:+43384167 None:intergenic
GGCATCACTACCTTCCCTTG+AGG 0.646807 6_2:-43386004 Msa0917830:CDS
GTAGGACCACTGGTGCTGGT+GGG 0.647578 6_2:+43386046 None:intergenic
TCATACGCCCAATTGGTCAA+GGG 0.653662 6_2:-43385897 Msa0917830:intron
AGGTAATTGTTATGGTACTG+GGG 0.660624 6_2:-43384468 Msa0917830:CDS
TGGTGCTAATGCAATGAGGA+TGG 0.662918 6_2:-43385767 Msa0917830:CDS
ATGGGAGACTCAATATGATG+CGG 0.663539 6_2:-43385543 Msa0917830:CDS
ACACCAACAAACATTAGGTG+AGG 0.663720 6_2:+43384126 None:intergenic
TCACCAATTGAAAGAGAACA+TGG 0.665912 6_2:+43384051 None:intergenic
GTGGTGAGCCTTACGACCTG+TGG 0.668031 6_2:+43385316 None:intergenic
CCATGTCTAGTGCCACGTCG+TGG 0.693029 6_2:+43385297 None:intergenic
AATTGAAAGAGAACATGGTG+AGG 0.697328 6_2:+43384056 None:intergenic
TCGTAAGGCTCACCACGACG+TGG 0.712195 6_2:-43385309 Msa0917830:CDS
AATCCAAAAGACATCAACTG+TGG 0.734923 6_2:-43386205 Msa0917830:CDS
AAGATGGTGCTAATGCAATG+AGG 0.735156 6_2:-43385771 Msa0917830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTATAATTTCAAACA+CGG + chr6_2:43384399-43384418 None:intergenic 10.0%
!!! ATATGTGAACATATATATTT+TGG - chr6_2:43386030-43386049 Msa0917830:CDS 15.0%
!! TAATGATCAAAATACATATA+TGG - chr6_2:43386144-43386163 Msa0917830:CDS 15.0%
!! ATATGTGAACATATATAATT+TGG - chr6_2:43386254-43386273 Msa0917830:CDS 15.0%
!!! TTTAATTTCTACTAATTGTA+TGG - chr6_2:43387005-43387024 Msa0917830:intron 15.0%
!!! TTGATATTTTTGTTTGTGTT+TGG - chr6_2:43384264-43384283 Msa0917830:CDS 20.0%
!!! CAATAAATTTTCATCAAAGT+CGG - chr6_2:43384419-43384438 Msa0917830:CDS 20.0%
!! TTATAATAGCATCTTTCTTA+GGG + chr6_2:43385082-43385101 None:intergenic 20.0%
!! TTTATAATAGCATCTTTCTT+AGG + chr6_2:43385083-43385102 None:intergenic 20.0%
!! CTTACAAAAGTAAGATATAA+GGG - chr6_2:43385535-43385554 Msa0917830:CDS 20.0%
!! TTACAAAAGTAAGATATAAG+GGG - chr6_2:43385536-43385555 Msa0917830:CDS 20.0%
!! AGATATTAAAGAAATTGGAA+TGG + chr6_2:43385741-43385760 None:intergenic 20.0%
!! GAACTAGATATTAAAGAAAT+TGG + chr6_2:43385746-43385765 None:intergenic 20.0%
!!! AGACATTACTATTTGTTTTA+TGG - chr6_2:43385782-43385801 Msa0917830:CDS 20.0%
!!! ATAAGTTGTGTTTTTTTTAC+AGG - chr6_2:43386390-43386409 Msa0917830:intron 20.0%
!! TTTGGTTAACCAAAAAAATT+TGG + chr6_2:43387049-43387068 None:intergenic 20.0%
! TTTCAAACATTAGATGCATA+TGG - chr6_2:43383997-43384016 Msa0917830:three_prime_UTR 25.0%
! TATAATAGCATCTTTCTTAG+GGG + chr6_2:43385081-43385100 None:intergenic 25.0%
!!! TCTATGGTTTGAAACATTTT+CGG - chr6_2:43385316-43385335 Msa0917830:CDS 25.0%
!! AAAGAATAATGTTGCTTCAT+TGG - chr6_2:43385349-43385368 Msa0917830:CDS 25.0%
!!! CTATTTTTATATTGTCTGAC+AGG - chr6_2:43385429-43385448 Msa0917830:CDS 25.0%
! GCTTACAAAAGTAAGATATA+AGG - chr6_2:43385534-43385553 Msa0917830:CDS 25.0%
! TACAAAAGTAAGATATAAGG+GGG - chr6_2:43385537-43385556 Msa0917830:CDS 25.0%
! AAGATTGATGAGAATTCTAA+TGG - chr6_2:43386445-43386464 Msa0917830:intron 25.0%
!!! GTTGGTGTTTTAGTTTTTTT+TGG - chr6_2:43386894-43386913 Msa0917830:intron 25.0%
!! TAGGCTATTTTGTTTGTGAA+TGG - chr6_2:43383872-43383891 Msa0917830:three_prime_UTR 30.0%
!! AGGCTATTTTGTTTGTGAAT+GGG - chr6_2:43383873-43383892 Msa0917830:three_prime_UTR 30.0%
!! ATTTTGTTTGTGAATGGGTT+TGG - chr6_2:43383878-43383897 Msa0917830:three_prime_UTR 30.0%
!! TTTTTGTTTGTGTTTGGTTG+TGG - chr6_2:43384270-43384289 Msa0917830:CDS 30.0%
!! TTTTGTTTGTGTTTGGTTGT+GGG - chr6_2:43384271-43384290 Msa0917830:CDS 30.0%
!! TGTGAATTTTGGTACTGTAA+TGG - chr6_2:43384315-43384334 Msa0917830:CDS 30.0%
TATTTGTATTAACAGTGCAC+TGG - chr6_2:43384500-43384519 Msa0917830:CDS 30.0%
AAAATGACTAGACAATGTCA+TGG - chr6_2:43384627-43384646 Msa0917830:intron 30.0%
TAAAATACCCTTGACCAATT+GGG + chr6_2:43385118-43385137 None:intergenic 30.0%
ATAAAATACCCTTGACCAAT+TGG + chr6_2:43385119-43385138 None:intergenic 30.0%
CTTCACAAAACAAGACTAAT+CGG - chr6_2:43385638-43385657 Msa0917830:intron 30.0%
TTCACAAAACAAGACTAATC+GGG - chr6_2:43385639-43385658 Msa0917830:intron 30.0%
ACTGACAGTGTAAAATACTT+GGG - chr6_2:43385809-43385828 Msa0917830:intron 30.0%
CACAAGCACATAATGAATTA+TGG + chr6_2:43386073-43386092 None:intergenic 30.0%
ATGGATAAGTTATGTAAACC+TGG - chr6_2:43386163-43386182 Msa0917830:CDS 30.0%
TAACACATATCTCAAGATTG+TGG + chr6_2:43386230-43386249 None:intergenic 30.0%
! CAGAAGCACATAATGAATTA+TGG + chr6_2:43386297-43386316 None:intergenic 30.0%
AGAGAAACGACTTCAATTAT+GGG - chr6_2:43386489-43386508 Msa0917830:intron 30.0%
TTATCTTTCAACATTAGACC+AGG - chr6_2:43386562-43386581 Msa0917830:intron 30.0%
CTAAAACACCAACAAACATT+AGG + chr6_2:43386887-43386906 None:intergenic 30.0%
ACACAATTGTGAAGTTCTTA+TGG - chr6_2:43386922-43386941 Msa0917830:intron 30.0%
!!! CAGCATATGCCAAATTTTTT+TGG - chr6_2:43387037-43387056 Msa0917830:intron 30.0%
TATGAGCATGCTTATTACTG+AGG - chr6_2:43383944-43383963 Msa0917830:three_prime_UTR 35.0%
ACATTAGATGCATATGGAGA+TGG - chr6_2:43384003-43384022 Msa0917830:three_prime_UTR 35.0%
!!! CTTATTTTACGAGTGGAGTT+GGG - chr6_2:43384055-43384074 Msa0917830:three_prime_UTR 35.0%
! TAAGCTATGGGTGTGAATTT+TGG - chr6_2:43384304-43384323 Msa0917830:CDS 35.0%
CAACCATTACTTCATGCTTT+CGG - chr6_2:43384548-43384567 Msa0917830:CDS 35.0%
TAATACCTTTGAACGAGCAT+TGG + chr6_2:43384676-43384695 None:intergenic 35.0%
! GTTGATGTCTTTTGGATTGT+TGG + chr6_2:43384798-43384817 None:intergenic 35.0%
AATCCAAAAGACATCAACTG+TGG - chr6_2:43384800-43384819 Msa0917830:intron 35.0%
AGATTTACACCTAGCAAAGA+TGG - chr6_2:43385218-43385237 Msa0917830:intron 35.0%
AAAAGGTTCCTCAAGATCTA+TGG - chr6_2:43385300-43385319 Msa0917830:CDS 35.0%
GTTTCAAACCATAGATCTTG+AGG + chr6_2:43385311-43385330 None:intergenic 35.0%
!! GGTTTGAAACATTTTCGGTA+AGG - chr6_2:43385321-43385340 Msa0917830:CDS 35.0%
TCTGACAGGAATATGTTTCA+TGG - chr6_2:43385443-43385462 Msa0917830:CDS 35.0%
CTGACAGGAATATGTTTCAT+GGG - chr6_2:43385444-43385463 Msa0917830:CDS 35.0%
! CTTTTGTAAGCATGTCAGTA+AGG + chr6_2:43385525-43385544 None:intergenic 35.0%
!! ATGCTGGTCTTCTTGAATAT+TGG - chr6_2:43385590-43385609 Msa0917830:intron 35.0%
TCACAAAACAAGACTAATCG+GGG - chr6_2:43385640-43385659 Msa0917830:intron 35.0%
GACTGACAGTGTAAAATACT+TGG - chr6_2:43385808-43385827 Msa0917830:intron 35.0%
TCTCAAATTGCAAGTATTCC+AGG + chr6_2:43386184-43386203 None:intergenic 35.0%
CTCAAGATTGTGGACATATT+CGG + chr6_2:43386220-43386239 None:intergenic 35.0%
CAATCTTCGTTAGTTGAGTT+AGG + chr6_2:43386432-43386451 None:intergenic 35.0%
TTCTAATGGTGATATGCAAG+AGG - chr6_2:43386459-43386478 Msa0917830:intron 35.0%
GAGAGAAACGACTTCAATTA+TGG - chr6_2:43386488-43386507 Msa0917830:intron 35.0%
AATTATGGGTAGATGTTGCT+GGG - chr6_2:43386503-43386522 Msa0917830:intron 35.0%
TTGTCTCGAGGTAATTGTTA+TGG - chr6_2:43386529-43386548 Msa0917830:intron 35.0%
GAGGTAATTGTTATGGTACT+GGG - chr6_2:43386536-43386555 Msa0917830:intron 35.0%
AGGTAATTGTTATGGTACTG+GGG - chr6_2:43386537-43386556 Msa0917830:intron 35.0%
ATGTTGTCCTCTTGAAAATG+AGG - chr6_2:43386606-43386625 Msa0917830:intron 35.0%
!! TCAATCACCTCATTTTCAAG+AGG + chr6_2:43386616-43386635 None:intergenic 35.0%
GAATCAATTCTCTACTGCTA+TGG - chr6_2:43386729-43386748 Msa0917830:intron 35.0%
!! GGAAGCTTTAGAGAATCAAT+CGG - chr6_2:43386771-43386790 Msa0917830:intron 35.0%
!! GAAGCTTTAGAGAATCAATC+GGG - chr6_2:43386772-43386791 Msa0917830:intron 35.0%
AATTGAAAGAGAACATGGTG+AGG + chr6_2:43386952-43386971 None:intergenic 35.0%
TCACCATGTTCTCTTTCAAT+TGG - chr6_2:43386951-43386970 Msa0917830:intron 35.0%
TCACCAATTGAAAGAGAACA+TGG + chr6_2:43386957-43386976 None:intergenic 35.0%
!!! ATTGGTGACGTGTTATGTTT+TGG - chr6_2:43386969-43386988 Msa0917830:intron 35.0%
!!! TTGGTGACGTGTTATGTTTT+GGG - chr6_2:43386970-43386989 Msa0917830:intron 35.0%
TTAACCAAAACTAGTGACAC+AGG - chr6_2:43387060-43387079 Msa0917830:intron 35.0%
!! ATAACCTGTGTCACTAGTTT+TGG + chr6_2:43387067-43387086 None:intergenic 35.0%
! TAGTGACACAGGTTATGTTT+TGG - chr6_2:43387071-43387090 Msa0917830:intron 35.0%
! TTGTTTGTGAATGGGTTTGG+TGG - chr6_2:43383881-43383900 Msa0917830:three_prime_UTR 40.0%
!!! GCTTATTTTACGAGTGGAGT+TGG - chr6_2:43384054-43384073 Msa0917830:three_prime_UTR 40.0%
!!! AGTGTTTTCTGGGACTGTTT+TGG - chr6_2:43384221-43384240 Msa0917830:CDS 40.0%
!! CAAAGTCGGTGTTTTCAGTA+TGG - chr6_2:43384433-43384452 Msa0917830:CDS 40.0%
! CGAAAGCATGAAGTAATGGT+TGG + chr6_2:43384550-43384569 None:intergenic 40.0%
! CAACCGAAAGCATGAAGTAA+TGG + chr6_2:43384554-43384573 None:intergenic 40.0%
!! CGTTCAAAGGTATTACAACC+TGG - chr6_2:43384681-43384700 Msa0917830:intron 40.0%
! GTTGCTTTAGCAAGATATCC+AGG + chr6_2:43384702-43384721 None:intergenic 40.0%
GATATCTTGCTAAAGCAACC+AGG - chr6_2:43384703-43384722 Msa0917830:intron 40.0%
!!! GTGGCAACCCTAGTTTTTTT+CGG + chr6_2:43384755-43384774 None:intergenic 40.0%
GAAAAAAACTAGGGTTGCCA+CGG - chr6_2:43384754-43384773 Msa0917830:intron 40.0%
!! TTTTGGATTGTTGGTGAGGT+GGG + chr6_2:43384789-43384808 None:intergenic 40.0%
! TGTCTTTTGGATTGTTGGTG+AGG + chr6_2:43384793-43384812 None:intergenic 40.0%
!! GGACATCTAGTTCTTTAGGT+TGG + chr6_2:43384869-43384888 None:intergenic 40.0%
!! GGTTGGACATCTAGTTCTTT+AGG + chr6_2:43384873-43384892 None:intergenic 40.0%
! ATCTAGATCAGTAGGTTGGA+CGG + chr6_2:43384928-43384947 None:intergenic 40.0%
AGTTGGACATCTAGATCAGT+AGG + chr6_2:43384936-43384955 None:intergenic 40.0%
! AAGATGGTGCTAATGCAATG+AGG - chr6_2:43385234-43385253 Msa0917830:intron 40.0%
ATGCAATGAGGATGGCTATT+AGG - chr6_2:43385246-43385265 Msa0917830:intron 40.0%
TGGCTATTAGGCGTCAATTT+CGG - chr6_2:43385258-43385277 Msa0917830:intron 40.0%
!!! TGTTTTTTCGTGCTGGGAAA+AGG - chr6_2:43385283-43385302 Msa0917830:intron 40.0%
! GCTTCATTGGTTGAAAACTG+TGG - chr6_2:43385362-43385381 Msa0917830:CDS 40.0%
! CATATTTCTGTAGCAGCCAA+AGG + chr6_2:43385397-43385416 None:intergenic 40.0%
ATGGGAGACTCAATATGATG+CGG - chr6_2:43385462-43385481 Msa0917830:intron 40.0%
CTCAATATGATGCGGAAATC+AGG - chr6_2:43385470-43385489 Msa0917830:intron 40.0%
ATAAGGGGGAAAGACCTAAA+TGG - chr6_2:43385551-43385570 Msa0917830:CDS 40.0%
AAACAAGACTAATCGGGGTT+CGG - chr6_2:43385645-43385664 Msa0917830:intron 40.0%
AAGAGTTCATCAGGATGGAT+AGG + chr6_2:43385838-43385857 None:intergenic 40.0%
TAATGGTGATATGCAAGAGG+TGG - chr6_2:43386462-43386481 Msa0917830:intron 40.0%
CAATTATGGGTAGATGTTGC+TGG - chr6_2:43386502-43386521 Msa0917830:intron 40.0%
ATTATGGGTAGATGTTGCTG+GGG - chr6_2:43386504-43386523 Msa0917830:intron 40.0%
CGAGGTAATTGTTATGGTAC+TGG - chr6_2:43386535-43386554 Msa0917830:intron 40.0%
GGTGATTGAAATGTTTCGTC+AGG - chr6_2:43386627-43386646 Msa0917830:intron 40.0%
GATTGAAATGTTTCGTCAGG+AGG - chr6_2:43386630-43386649 Msa0917830:intron 40.0%
CTACTGCTATGGAAGAATTC+AGG - chr6_2:43386740-43386759 Msa0917830:intron 40.0%
TCAAGAGCAGGATCATAATG+TGG + chr6_2:43386841-43386860 None:intergenic 40.0%
TCTGATTGATCATCAAGAGC+AGG + chr6_2:43386853-43386872 None:intergenic 40.0%
! TGCTCTTGATGATCAATCAG+AGG - chr6_2:43386852-43386871 Msa0917830:intron 40.0%
TGACCTCACCTAATGTTTGT+TGG - chr6_2:43386876-43386895 Msa0917830:intron 40.0%
ACACCAACAAACATTAGGTG+AGG + chr6_2:43386882-43386901 None:intergenic 40.0%
!!! AGGTTATGTTTTGGCGCTTT+AGG - chr6_2:43387080-43387099 Msa0917830:intron 40.0%
TGCATATGGAGATGGATGCT+AGG - chr6_2:43384011-43384030 Msa0917830:three_prime_UTR 45.0%
CACTCGTAAAATAAGCACGC+CGG + chr6_2:43384050-43384069 None:intergenic 45.0%
TACCTCAAGAGGCAATCTCT+AGG + chr6_2:43384083-43384102 None:intergenic 45.0%
AGAGATTGCCTCTTGAGGTA+AGG - chr6_2:43384083-43384102 Msa0917830:three_prime_UTR 45.0%
!!! TTTTCTGGGACTGTTTTGGC+AGG - chr6_2:43384225-43384244 Msa0917830:CDS 45.0%
!!! TTTCTGGGACTGTTTTGGCA+GGG - chr6_2:43384226-43384245 Msa0917830:CDS 45.0%
TGTTTGTGTTTGGTTGTGGG+AGG - chr6_2:43384274-43384293 Msa0917830:CDS 45.0%
TATGCATACATGTCGTGCAC+TGG + chr6_2:43384461-43384480 None:intergenic 45.0%
TTCCACCAATGCTCGTTCAA+AGG - chr6_2:43384668-43384687 Msa0917830:intron 45.0%
!! TACCTTTGAACGAGCATTGG+TGG + chr6_2:43384673-43384692 None:intergenic 45.0%
GTTGGCTACAACAAGTTTCC+TGG + chr6_2:43384724-43384743 None:intergenic 45.0%
AGACGCGCCGAAAAAAACTA+GGG - chr6_2:43384745-43384764 Msa0917830:intron 45.0%
!! CTTTTGGATTGTTGGTGAGG+TGG + chr6_2:43384790-43384809 None:intergenic 45.0%
!! GGACCACAGTTGATGTCTTT+TGG + chr6_2:43384806-43384825 None:intergenic 45.0%
!! AGTTCTTTAGGTTGGACGAC+TGG + chr6_2:43384861-43384880 None:intergenic 45.0%
GGACATCTAGATCAGTAGGT+TGG + chr6_2:43384932-43384951 None:intergenic 45.0%
CAGATGATCATCCTCCTCAA+GGG + chr6_2:43385018-43385037 None:intergenic 45.0%
AAACACACATACCGAGCAAG+AGG - chr6_2:43385055-43385074 Msa0917830:intron 45.0%
AAGACCATCATACGCCCAAT+TGG - chr6_2:43385101-43385120 Msa0917830:intron 45.0%
TTGACCAATTGGGCGTATGA+TGG + chr6_2:43385108-43385127 None:intergenic 45.0%
ATCATACGCCCAATTGGTCA+AGG - chr6_2:43385107-43385126 Msa0917830:intron 45.0%
TCATACGCCCAATTGGTCAA+GGG - chr6_2:43385108-43385127 Msa0917830:intron 45.0%
GCATTAGCACCATCTTTGCT+AGG + chr6_2:43385230-43385249 None:intergenic 45.0%
! TGGTGCTAATGCAATGAGGA+TGG - chr6_2:43385238-43385257 Msa0917830:intron 45.0%
GGCTATTAGGCGTCAATTTC+GGG - chr6_2:43385259-43385278 Msa0917830:intron 45.0%
!!! TTCGGGATGTTTTTTCGTGC+TGG - chr6_2:43385276-43385295 Msa0917830:intron 45.0%
!!! TCGGGATGTTTTTTCGTGCT+GGG - chr6_2:43385277-43385296 Msa0917830:intron 45.0%
GGGGAAAGACCTAAATGGAT+GGG - chr6_2:43385556-43385575 Msa0917830:CDS 45.0%
AAGACCTAAATGGATGGGAG+AGG - chr6_2:43385561-43385580 Msa0917830:intron 45.0%
AACAAGACTAATCGGGGTTC+GGG - chr6_2:43385646-43385665 Msa0917830:intron 45.0%
CCAAGAAGAGTTCATCAGGA+TGG + chr6_2:43385843-43385862 None:intergenic 45.0%
CCATCCTGATGAACTCTTCT+TGG - chr6_2:43385840-43385859 Msa0917830:intron 45.0%
GTAGCCAAGAAGAGTTCATC+AGG + chr6_2:43385847-43385866 None:intergenic 45.0%
TCTTCTTGGCTACTCGTAAG+AGG - chr6_2:43385854-43385873 Msa0917830:intron 45.0%
TAAGAGGAAGTCTGGCGATT+GGG - chr6_2:43385870-43385889 Msa0917830:intron 45.0%
TTATGGGTAGATGTTGCTGG+GGG - chr6_2:43386505-43386524 Msa0917830:intron 45.0%
TGAGTCAGATGACTTACACC+TGG + chr6_2:43386583-43386602 None:intergenic 45.0%
! GGAAGAATTCAGGAAGTGCA+TGG - chr6_2:43386750-43386769 Msa0917830:intron 45.0%
TTAGAGAATCAATCGGGCGA+TGG - chr6_2:43386778-43386797 Msa0917830:intron 45.0%
!! CGTGTTATGTTTTGGGCTGT+AGG - chr6_2:43386977-43386996 Msa0917830:intron 45.0%
GCTAGGTAGTTCGAGTACTC+CGG - chr6_2:43384028-43384047 Msa0917830:three_prime_UTR 50.0%
!!! CGGCGTGCTTATTTTACGAG+TGG - chr6_2:43384048-43384067 Msa0917830:three_prime_UTR 50.0%
CACCTAGAGATTGCCTCTTG+AGG - chr6_2:43384078-43384097 Msa0917830:three_prime_UTR 50.0%
CAGACTCGCGAAACACCAAA+GGG + chr6_2:43384118-43384137 None:intergenic 50.0%
ACAGACTCGCGAAACACCAA+AGG + chr6_2:43384119-43384138 None:intergenic 50.0%
! TTGGTGTTTCGCGAGTCTGT+CGG - chr6_2:43384119-43384138 Msa0917830:three_prime_UTR 50.0%
!! TTTCGCGAGTCTGTCGGTTT+GGG - chr6_2:43384125-43384144 Msa0917830:three_prime_UTR 50.0%
! CCTGCTGTGCAGTGTTTTCT+GGG - chr6_2:43384211-43384230 Msa0917830:CDS 50.0%
!!! TTCTGGGACTGTTTTGGCAG+GGG - chr6_2:43384227-43384246 Msa0917830:CDS 50.0%
TTGTGTTTGGTTGTGGGAGG+TGG - chr6_2:43384277-43384296 Msa0917830:CDS 50.0%
TGTGTTTGGTTGTGGGAGGT+GGG - chr6_2:43384278-43384297 Msa0917830:CDS 50.0%
!!! TTTTTTTCGGCGCGTCTCGT+TGG + chr6_2:43384742-43384761 None:intergenic 50.0%
GAGACGCGCCGAAAAAAACT+AGG - chr6_2:43384744-43384763 Msa0917830:intron 50.0%
!! TTTAGGTTGGACGACTGGTC+GGG + chr6_2:43384856-43384875 None:intergenic 50.0%
!! CTTTAGGTTGGACGACTGGT+CGG + chr6_2:43384857-43384876 None:intergenic 50.0%
ACTTGAGAAGGTAGGACCAC+TGG + chr6_2:43384972-43384991 None:intergenic 50.0%
GTGCAGTCACTTGAGAAGGT+AGG + chr6_2:43384980-43384999 None:intergenic 50.0%
ACCTTCTCAAGTGACTGCAC+CGG - chr6_2:43384980-43384999 Msa0917830:intron 50.0%
TCAAGGGAAGGTAGTGATGC+CGG + chr6_2:43385002-43385021 None:intergenic 50.0%
ATCACTACCTTCCCTTGAGG+AGG - chr6_2:43385004-43385023 Msa0917830:intron 50.0%
TGATCATCCTCCTCAAGGGA+AGG + chr6_2:43385014-43385033 None:intergenic 50.0%
GCAGATGATCATCCTCCTCA+AGG + chr6_2:43385019-43385038 None:intergenic 50.0%
GAGGAGGATGATCATCTGCA+AGG - chr6_2:43385020-43385039 Msa0917830:intron 50.0%
TGATCATCTGCAAGGTGTGC+AGG - chr6_2:43385028-43385047 Msa0917830:intron 50.0%
GATCATCTGCAAGGTGTGCA+GGG - chr6_2:43385029-43385048 Msa0917830:intron 50.0%
TTTCTTAGGGGCCTCTTGCT+CGG + chr6_2:43385069-43385088 None:intergenic 50.0%
! ACTGTGGTGCCTTGTTCCTT+TGG - chr6_2:43385378-43385397 Msa0917830:CDS 50.0%
CTGTAGCAGCCAAAGGAACA+AGG + chr6_2:43385390-43385409 None:intergenic 50.0%
! GCATGTCAGTAAGGCGCTTT+GGG + chr6_2:43385516-43385535 None:intergenic 50.0%
! AGCATGTCAGTAAGGCGCTT+TGG + chr6_2:43385517-43385536 None:intergenic 50.0%
GGGGGAAAGACCTAAATGGA+TGG - chr6_2:43385555-43385574 Msa0917830:CDS 50.0%
GCATCCTCTCCCATCCATTT+AGG + chr6_2:43385568-43385587 None:intergenic 50.0%
ATGGGAGAGGATGCATATGC+TGG - chr6_2:43385574-43385593 Msa0917830:intron 50.0%
TGTCCATACCACAGGTCGTA+AGG - chr6_2:43385681-43385700 Msa0917830:intron 50.0%
GCTACTCGTAAGAGGAAGTC+TGG - chr6_2:43385862-43385881 Msa0917830:intron 50.0%
GTAAGAGGAAGTCTGGCGAT+TGG - chr6_2:43385869-43385888 Msa0917830:intron 50.0%
GGTGATATGCAAGAGGTGGA+CGG - chr6_2:43386466-43386485 Msa0917830:intron 50.0%
GATCAGCTTCAGCAGCTCTT+TGG + chr6_2:43386690-43386709 None:intergenic 50.0%
TGGCACTGCCTTACCTCAAG+AGG + chr6_2:43384094-43384113 None:intergenic 55.0%
! GTTTCGCGAGTCTGTCGGTT+TGG - chr6_2:43384124-43384143 Msa0917830:three_prime_UTR 55.0%
!! TTCGCGAGTCTGTCGGTTTG+GGG - chr6_2:43384126-43384145 Msa0917830:three_prime_UTR 55.0%
GCTCGGTTATGACTGCTGTC+AGG - chr6_2:43384158-43384177 Msa0917830:three_prime_UTR 55.0%
! GCCTGCTGTGCAGTGTTTTC+TGG - chr6_2:43384210-43384229 Msa0917830:CDS 55.0%
CCCAGAAAACACTGCACAGC+AGG + chr6_2:43384214-43384233 None:intergenic 55.0%
GTGTTTGGTTGTGGGAGGTG+GGG - chr6_2:43384279-43384298 Msa0917830:CDS 55.0%
TGTTTGGTTGTGGGAGGTGG+GGG - chr6_2:43384280-43384299 Msa0917830:CDS 55.0%
!! TTAGGTTGGACGACTGGTCG+GGG + chr6_2:43384855-43384874 None:intergenic 55.0%
! AGATCAGTAGGTTGGACGGC+TGG + chr6_2:43384924-43384943 None:intergenic 55.0%
GGCATCACTACCTTCCCTTG+AGG - chr6_2:43385001-43385020 Msa0917830:intron 55.0%
ACTAATCGGGGTTCGGGCAA+AGG - chr6_2:43385652-43385671 Msa0917830:intron 55.0%
GAGCCTTACGACCTGTGGTA+TGG + chr6_2:43385687-43385706 None:intergenic 55.0%
!! GATTGGGTTGACAGTCGTGC+TGG - chr6_2:43385886-43385905 Msa0917830:intron 55.0%
GTAAGGCAGTGCCAGCCCTT+TGG - chr6_2:43384100-43384119 Msa0917830:three_prime_UTR 60.0%
CTCGCGAAACACCAAAGGGC+TGG + chr6_2:43384114-43384133 None:intergenic 60.0%
!! TCGCGAGTCTGTCGGTTTGG+GGG - chr6_2:43384127-43384146 Msa0917830:three_prime_UTR 60.0%
GGAGGTGGGGGCTAAGCTAT+GGG - chr6_2:43384292-43384311 Msa0917830:CDS 60.0%
! GTTGGTGAGGTGGGCTCAAC+TGG + chr6_2:43384780-43384799 None:intergenic 60.0%
! GGGAGGTTGAATGGCTGGTC+GGG + chr6_2:43384898-43384917 None:intergenic 60.0%
GGGGAGGTTGAATGGCTGGT+CGG + chr6_2:43384899-43384918 None:intergenic 60.0%
! AGTAGGTTGGACGGCTGGTC+GGG + chr6_2:43384919-43384938 None:intergenic 60.0%
! CAGTAGGTTGGACGGCTGGT+CGG + chr6_2:43384920-43384939 None:intergenic 60.0%
!! CTGGTGCTGGTGGGTCAAGT+TGG + chr6_2:43384953-43384972 None:intergenic 60.0%
ACTTGACCCACCAGCACCAG+TGG - chr6_2:43384953-43384972 Msa0917830:intron 60.0%
!! GTAGGACCACTGGTGCTGGT+GGG + chr6_2:43384962-43384981 None:intergenic 60.0%
GAAGGTAGGACCACTGGTGC+TGG + chr6_2:43384966-43384985 None:intergenic 60.0%
GCCGGTGCAGTCACTTGAGA+AGG + chr6_2:43384984-43385003 None:intergenic 60.0%
AATCGGGGTTCGGGCAAAGG+AGG - chr6_2:43385655-43385674 Msa0917830:intron 60.0%
GGAGGAGCTGTCCATACCAC+AGG - chr6_2:43385673-43385692 Msa0917830:intron 60.0%
GTGGTGAGCCTTACGACCTG+TGG + chr6_2:43385692-43385711 None:intergenic 60.0%
TCGTAAGGCTCACCACGACG+TGG - chr6_2:43385696-43385715 Msa0917830:CDS 60.0%
CCATGTCTAGTGCCACGTCG+TGG + chr6_2:43385711-43385730 None:intergenic 60.0%
CCACGACGTGGCACTAGACA+TGG - chr6_2:43385708-43385727 Msa0917830:CDS 60.0%
GTTGCTGGGGGTTTGTCTCG+AGG - chr6_2:43386517-43386536 Msa0917830:intron 60.0%
!! CGCGAGTCTGTCGGTTTGGG+GGG - chr6_2:43384128-43384147 Msa0917830:three_prime_UTR 65.0%
!! TGTCGGTTTGGGGGGTCTGC+TGG - chr6_2:43384136-43384155 Msa0917830:three_prime_UTR 65.0%
! GTTTGGGGGGTCTGCTGGCT+CGG - chr6_2:43384141-43384160 Msa0917830:three_prime_UTR 65.0%
GGGAGGTGGGGGCTAAGCTA+TGG - chr6_2:43384291-43384310 Msa0917830:CDS 65.0%
! GGGAAGTGGGATGGCTGGTC+GGG + chr6_2:43384835-43384854 None:intergenic 65.0%
GGGGAAGTGGGATGGCTGGT+CGG + chr6_2:43384836-43384855 None:intergenic 65.0%
! GACTGGTCGGGGAAGTGGGA+TGG + chr6_2:43384844-43384863 None:intergenic 65.0%
! GGACGACTGGTCGGGGAAGT+GGG + chr6_2:43384848-43384867 None:intergenic 65.0%
! TGGACGACTGGTCGGGGAAG+TGG + chr6_2:43384849-43384868 None:intergenic 65.0%
! GAATGGCTGGTCGGGCAGGT+TGG + chr6_2:43384890-43384909 None:intergenic 65.0%
! GGTTGAATGGCTGGTCGGGC+AGG + chr6_2:43384894-43384913 None:intergenic 65.0%
GGTCGGGGAGGTTGAATGGC+TGG + chr6_2:43384903-43384922 None:intergenic 65.0%
! GGCTGGTCGGGGAGGTTGAA+TGG + chr6_2:43384907-43384926 None:intergenic 65.0%
! GTAGGTTGGACGGCTGGTCG+GGG + chr6_2:43384918-43384937 None:intergenic 65.0%
! GGTAGGACCACTGGTGCTGG+TGG + chr6_2:43384963-43384982 None:intergenic 65.0%
! GAGGTGGGCTCAACTGGCCG+TGG + chr6_2:43384774-43384793 None:intergenic 70.0%
! GGATGGCTGGTCGGGCAGGT+TGG + chr6_2:43384827-43384846 None:intergenic 70.0%
! AGTGGGATGGCTGGTCGGGC+AGG + chr6_2:43384831-43384850 None:intergenic 70.0%
GGTCGGGGAAGTGGGATGGC+TGG + chr6_2:43384840-43384859 None:intergenic 70.0%
GGCTGCAGCAGCACGTGCTG+AGG - chr6_2:43386651-43386670 Msa0917830:intron 70.0%
! GGTTGGACGGCTGGTCGGGG+AGG + chr6_2:43384915-43384934 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 43383854 43387173 43383854 ID=Msa0917830;Name=Msa0917830
chr6_2 mRNA 43383854 43387173 43383854 ID=Msa0917830-mRNA-1;Parent=Msa0917830;Name=Msa0917830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=10|0.66|0.42|0.85|0.66|0.57|7|354|464
chr6_2 exon 43383854 43384615 43383854 ID=Msa0917830-mRNA-1:exon:6910;Parent=Msa0917830-mRNA-1
chr6_2 exon 43385109 43385210 43385109 ID=Msa0917830-mRNA-1:exon:6909;Parent=Msa0917830-mRNA-1
chr6_2 exon 43385298 43385471 43385298 ID=Msa0917830-mRNA-1:exon:6908;Parent=Msa0917830-mRNA-1
chr6_2 exon 43385484 43385576 43385484 ID=Msa0917830-mRNA-1:exon:6907;Parent=Msa0917830-mRNA-1
chr6_2 exon 43385690 43385807 43385690 ID=Msa0917830-mRNA-1:exon:6906;Parent=Msa0917830-mRNA-1
chr6_2 exon 43385898 43386400 43385898 ID=Msa0917830-mRNA-1:exon:6905;Parent=Msa0917830-mRNA-1
chr6_2 exon 43387167 43387173 43387167 ID=Msa0917830-mRNA-1:exon:6904;Parent=Msa0917830-mRNA-1
chr6_2 five_prime_UTR 43387167 43387173 43387167 ID=Msa0917830-mRNA-1:five_prime_utr;Parent=Msa0917830-mRNA-1
chr6_2 five_prime_UTR 43386398 43386400 43386398 ID=Msa0917830-mRNA-1:five_prime_utr;Parent=Msa0917830-mRNA-1
chr6_2 CDS 43385898 43386397 43385898 ID=Msa0917830-mRNA-1:cds;Parent=Msa0917830-mRNA-1
chr6_2 CDS 43385690 43385807 43385690 ID=Msa0917830-mRNA-1:cds;Parent=Msa0917830-mRNA-1
chr6_2 CDS 43385484 43385576 43385484 ID=Msa0917830-mRNA-1:cds;Parent=Msa0917830-mRNA-1
chr6_2 CDS 43385298 43385471 43385298 ID=Msa0917830-mRNA-1:cds;Parent=Msa0917830-mRNA-1
chr6_2 CDS 43385109 43385210 43385109 ID=Msa0917830-mRNA-1:cds;Parent=Msa0917830-mRNA-1
chr6_2 CDS 43384208 43384615 43384208 ID=Msa0917830-mRNA-1:cds;Parent=Msa0917830-mRNA-1
chr6_2 three_prime_UTR 43383854 43384207 43383854 ID=Msa0917830-mRNA-1:three_prime_utr;Parent=Msa0917830-mRNA-1
Gene Sequence

>Msa0917830

ATGACTAGACAATGTCATGGAACTAAGCGAAAAGAGTCTTCCACCAATGCTCGTTCAAAGGTATTACAACCTGGATATCTTGCTAAAGCAACCAGGAAACTTGTTGTAGCCAACGAGACGCGCCGAAAAAAACTAGGGTTGCCACGGCCAGTTGAGCCCACCTCACCAACAATCCAAAAGACATCAACTGTGGTCCAACCTGCCCGACCAGCCATCCCACTTCCCCGACCAGTCGTCCAACCTAAAGAACTAGATGTCCAACCTGCCCGACCAGCCATTCAACCTCCCCGACCAGCCGTCCAACCTACTGATCTAGATGTCCAACTTGACCCACCAGCACCAGTGGTCCTACCTTCTCAAGTGACTGCACCGGCATCACTACCTTCCCTTGAGGAGGATGATCATCTGCAAGGTGTGCAGGGAGAAAACACACATACCGAGCAAGAGGCCCCTAAGAAAGATGCTATTATAAAGACCATCATACGCCCAATTGGTCAAGGATTTACACCTAGCAAAGATGGTGCTAATGCAATGAGGATGGCTATTAGGCGTCAATTTCGGGATGTTTTTTCGTGCTGGGAAAAGGTTCCTCAAGATCTATGGTTTGAAACATTTTCGGAATATGTTTCATGGGAGACTCAATATGATGCGGAAATCAGGAGCATATTTGATAAAAAGTGCCCAAAGCGCCTTACTGACATGCTTACAAAAGGGGAAAGACCTAAATGGATGGGAGAGGATGCATATGCTGGTCTTCTTGAATATTGGAAGAGTGACAAATTCAACAAGCTTTCTTCACAAAACAAGACTAATCGGGGTTCGGGCAAAGGAGGAGCTGTCCATACCACAGGTCGTAAGGCTCACCACGACGTGGCACTAGACATGTGTAAAATACTTGGGCGACCTATCCATCCTGATGAACTCTTCTTGGCTACTCGTAAGAGGAAGTCTGGCGATTGGGTTGACAGTCGTGCTGGAAAAACTTATGATAACTATCAGCAACGCCTAACTCAACTAACGAAGATTGATGAGAATTCTAATGGTGATATGCAAGAGGTGGACGGAGAGAAACGACTTCAATTATGGGTAGATGTTGCTGGGGGTTTGTCTCGAGGTAATTGTTATGGTACTGGGGCTTTATCTTTCAACATTAGACCAGGTGTAAGTCATCTGACTCAAGAATGTTGTCCTCTTGAAAATGAGGTGATTGAAATGTTTCGTCAGGAGGCTGCAGCAGCACGTGCTGAGGCTGCTACAGCGAACCAAAGAGCTGCTGAAGCTGATCAGCGTTCTCAACAGCTAGAGAATCAATTCTCTACTGCTATGGAAGAATTCAGGAAGTGCATGGAAGCTTTAGAGAATCAATCGGGCGATGGTTCTTGTAGTACTATTTGA
Protein sequence

>Msa0917830

MTRQCHGTKRKESSTNARSKVLQPGYLAKATRKLVVANETRRKKLGLPRPVEPTSPTIQKTSTVVQPARPAIPLPRPVVQPKELDVQPARPAIQPPRPAVQPTDLDVQLDPPAPVVLPSQVTAPASLPSLEEDDHLQGVQGENTHTEQEAPKKDAIIKTIIRPIGQGFTPSKDGANAMRMAIRRQFRDVFSCWEKVPQDLWFETFSEYVSWETQYDAEIRSIFDKKCPKRLTDMLTKGERPKWMGEDAYAGLLEYWKSDKFNKLSSQNKTNRGSGKGGAVHTTGRKAHHDVALDMCKILGRPIHPDELFLATRKRKSGDWVDSRAGKTYDNYQQRLTQLTKIDENSNGDMQEVDGEKRLQLWVDVAGGLSRGNCYGTGALSFNIRPGVSHLTQECCPLENEVIEMFRQEAAAARAEAATANQRAAEADQRSQQLENQFSTAMEEFRKCMEALENQSGDGSCSTI*