AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0877410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877410 MtrunA17_Chr6g0459351 88.288 111 13 0 1 111 1 111 6.17e-68 205
Msa0877410 MtrunA17_Chr6g0459281 86.486 111 15 0 1 111 1 111 8.31e-68 204
Msa0877410 MtrunA17_Chr6g0459261 80.180 111 22 0 1 111 13 123 7.99e-61 187
Msa0877410 MtrunA17_Chr6g0459271 79.279 111 23 0 1 111 1 111 7.61e-60 184
Msa0877410 MtrunA17_Chr6g0459301 77.679 112 24 1 1 111 1 112 2.89e-57 178
Msa0877410 MtrunA17_Chr6g0459331 76.577 111 26 0 1 111 1 111 2.91e-57 177
Msa0877410 MtrunA17_Chr7g0266981 57.658 111 46 1 1 111 1 110 6.92e-41 136
Msa0877410 MtrunA17_Chr4g0044111 56.757 111 47 1 1 111 1 110 9.40e-40 133
Msa0877410 MtrunA17_Chr7g0266891 57.576 99 41 1 13 111 7 104 2.16e-36 124
Msa0877410 MtrunA17_Chr7g0270461 57.143 98 41 1 12 109 45 141 4.62e-32 110
Msa0877410 MtrunA17_Chr7g0270441 57.000 100 42 1 12 111 5 103 1.35e-30 109
Msa0877410 MtrunA17_Chr2g0324021 59.140 93 37 1 12 104 5 96 7.63e-30 107
Msa0877410 MtrunA17_Chr7g0267011 48.485 99 50 1 12 110 7 104 6.70e-29 103
Msa0877410 MtrunA17_Chr7g0270451 56.667 90 38 1 12 101 5 93 2.00e-28 103
Msa0877410 MtrunA17_Chr4g0025971 44.737 114 61 2 1 113 1 113 2.03e-27 101
Msa0877410 MtrunA17_Chr4g0026001 47.059 102 53 1 12 113 13 113 2.68e-27 101
Msa0877410 MtrunA17_Chr4g0044131 48.485 99 50 1 12 110 7 104 1.21e-26 99.8
Msa0877410 MtrunA17_Chr4g0025981 44.954 109 58 2 5 113 34 140 1.68e-26 100
Msa0877410 MtrunA17_Chr7g0244061 55.056 89 38 2 12 100 28 114 9.26e-26 97.8
Msa0877410 MtrunA17_Chr6g0459341 86.538 52 7 0 1 52 1 52 2.52e-25 91.7
Msa0877410 MtrunA17_Chr4g0040371 48.980 98 46 2 12 109 18 111 3.97e-24 93.2
Msa0877410 MtrunA17_Chr7g0252031 48.387 93 46 2 12 104 34 124 1.73e-22 89.4
Msa0877410 MtrunA17_Chr7g0266991 43.000 100 39 2 12 111 24 105 6.46e-20 81.3
Msa0877410 MtrunA17_Chr7g0268591 41.346 104 59 2 7 110 27 128 1.66e-19 81.3
Msa0877410 MtrunA17_Chr3g0084871 46.739 92 47 2 12 102 15 105 7.46e-19 79.3
Msa0877410 MtrunA17_Chr7g0267001 48.718 78 39 1 12 89 7 83 1.49e-17 75.5
Msa0877410 MtrunA17_Chr4g0045041 35.294 102 54 2 14 104 5 105 3.72e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877410 AT2G47140.1 58.065 93 38 1 12 104 5 96 1.18e-32 115
Msa0877410 AT2G47130.1 52.688 93 43 1 9 101 2 93 4.67e-29 105
Msa0877410 AT3G29250.3 50.526 95 46 1 7 101 36 129 1.91e-26 100
Msa0877410 AT2G47120.1 46.875 96 50 1 9 104 2 96 3.59e-26 98.6
Msa0877410 AT3G29250.2 50.538 93 45 1 9 101 2 93 3.69e-26 98.6
Msa0877410 AT3G29260.1 48.387 93 47 1 12 104 5 96 4.25e-26 98.2
Msa0877410 AT2G47120.2 47.312 93 48 1 12 104 6 97 2.09e-25 96.7
Msa0877410 AT3G29250.1 49.485 97 46 2 7 101 36 131 1.61e-24 94.7
Msa0877410 AT3G51680.1 46.667 105 51 2 1 101 20 123 1.91e-22 89.4
Msa0877410 AT3G26770.1 45.161 93 49 2 12 104 40 130 3.11e-20 83.6
Msa0877410 AT3G26760.1 41.237 97 55 2 6 102 29 123 6.24e-20 82.8
Msa0877410 AT4G03140.1 41.000 100 57 2 12 111 77 174 8.59e-20 82.8
Msa0877410 AT3G42960.1 43.299 97 51 2 6 102 1 93 2.83e-18 77.8
Msa0877410 AT1G52340.1 44.681 94 47 3 12 101 17 109 1.51e-17 76.3

Find 69 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCGAAGCACGCAATAAT+AGG 0.205116 6_1:-16816031 Msa0877410:three_prime_UTR
GTGGATGGTAGCTATGTTTC+TGG 0.232178 6_1:-16815764 Msa0877410:three_prime_UTR
CATTCACTAACAACAATCTT+AGG 0.241211 6_1:-16816799 Msa0877410:CDS
ATACAAGAAATAAATATAAT+TGG 0.311293 6_1:-16815612 Msa0877410:three_prime_UTR
TAGTGCCCCATGAATATAAA+AGG 0.316621 6_1:-16816869 Msa0877410:five_prime_UTR
GGCAGATGCTGTGTTGTTCT+TGG 0.317529 6_1:-16815828 Msa0877410:three_prime_UTR
TACCATGCGTTCACCTTGTT+CGG 0.342845 6_1:+16816706 None:intergenic
CAATCGACAGTCAATACTTA+TGG 0.350908 6_1:-16816566 Msa0877410:CDS
GATATTATGTTTAGCAATGC+TGG 0.362324 6_1:-16816257 Msa0877410:CDS
GCCAATGCCGCTGGCACCTC+CGG 0.364087 6_1:+16816751 None:intergenic
AGTGAATGTAGGTGCATCTA+TGG 0.374597 6_1:+16816627 None:intergenic
CTTGATTTCCCAACTCGTCT+TGG 0.391032 6_1:+16816669 None:intergenic
GTGCTTCGACATTATGTAAT+CGG 0.396590 6_1:+16816042 None:intergenic
CGTCTCTTTGCCAATGCCGC+TGG 0.405832 6_1:+16816742 None:intergenic
ATACTTCAACTAGAAGTGTT+AGG 0.406698 6_1:+16815654 None:intergenic
ACCGGAGGTGCCAGCGGCAT+TGG 0.425693 6_1:-16816752 Msa0877410:CDS
AACTTGCAAAGCATGGGATA+AGG 0.445636 6_1:-16815985 Msa0877410:three_prime_UTR
AACAACAATCTTAGGTTAGC+AGG 0.450218 6_1:-16816791 Msa0877410:CDS
TTGTTCTCAGTTAACATTCG+AGG 0.461567 6_1:-16816175 Msa0877410:three_prime_UTR
GTGTGCACGGCTAGCGTCGC+CGG 0.471191 6_1:-16816088 Msa0877410:three_prime_UTR
TCCAACACAGTTTGATCAGA+TGG 0.473176 6_1:+16816224 None:intergenic
GCCGACATCCAAGACGAGTT+GGG 0.474113 6_1:-16816677 Msa0877410:CDS
GAATGTTAACTGAGAACAAA+TGG 0.474911 6_1:+16816179 None:intergenic
GTGAATTGTGTATCACCAAA+TGG 0.474979 6_1:-16815962 Msa0877410:three_prime_UTR
TGTCGAAGCACGCAATAATA+GGG 0.476932 6_1:-16816030 Msa0877410:three_prime_UTR
GGAGAATACAAGAGGTTGGA+AGG 0.477377 6_1:-16815875 Msa0877410:three_prime_UTR
TCCCAACTCGTCTTGGATGT+CGG 0.482522 6_1:+16816676 None:intergenic
CTCAGTTAACATTCGAGGAA+TGG 0.485569 6_1:-16816170 Msa0877410:three_prime_UTR
CGCCGACATCCAAGACGAGT+TGG 0.490614 6_1:-16816678 Msa0877410:CDS
ACTTGCAAAGCATGGGATAA+GGG 0.492055 6_1:-16815984 Msa0877410:three_prime_UTR
ACATGTAAATTGCTAGATGC+AGG 0.492615 6_1:-16815923 Msa0877410:three_prime_UTR
GGCAAAATAGCCATCGTCAC+CGG 0.494254 6_1:-16816770 Msa0877410:CDS
AATGGTGTTGCTAATCCATT+TGG 0.497446 6_1:+16815947 None:intergenic
GGCCTTGATCTTCGTGTGGA+TGG 0.499300 6_1:-16815779 Msa0877410:three_prime_UTR
AATCAAGTTGCTGCATCCAT+TGG 0.502662 6_1:-16816653 Msa0877410:CDS
TCTAGCAATTTACATGTCAA+TGG 0.504616 6_1:+16815929 None:intergenic
ATATTATGTTTAGCAATGCT+GGG 0.517928 6_1:-16816256 Msa0877410:CDS
AATAATAGGGTTGATGCGTT+CGG 0.520347 6_1:-16816017 Msa0877410:three_prime_UTR
GAGGGGTAGCATTGTGTGCA+CGG 0.524508 6_1:-16816101 Msa0877410:three_prime_UTR
TCCATCTGATCAAACTGTGT+TGG 0.527521 6_1:-16816225 Msa0877410:CDS
AATGAATCTGACTTTGTCAC+TGG 0.533236 6_1:-16815800 Msa0877410:three_prime_UTR
AGTGTGCAACTTGCAAAGCA+TGG 0.534452 6_1:-16815992 Msa0877410:three_prime_UTR
GTGCATGTCTTTGCCGAACA+AGG 0.542837 6_1:-16816719 Msa0877410:CDS
CAAGTTGCTGCATCCATTGG+AGG 0.543473 6_1:-16816650 Msa0877410:CDS
CTTCAAGCCACCATGGCTAC+CGG 0.548980 6_1:+16816069 None:intergenic
CAGCGGCATTGGCAAAGAGA+CGG 0.557214 6_1:-16816741 Msa0877410:CDS
GCTAGCGTCGCCGGTAGCCA+TGG 0.557609 6_1:-16816079 Msa0877410:three_prime_UTR
TACCATCCACACGAAGATCA+AGG 0.559297 6_1:+16815777 None:intergenic
CACTGGCCTTGATCTTCGTG+TGG 0.560496 6_1:-16815783 Msa0877410:three_prime_UTR
ATACAAGAGGTTGGAAGGAG+TGG 0.561860 6_1:-16815870 Msa0877410:three_prime_UTR
ATGAATATAAAAGGCTAGCA+TGG 0.568984 6_1:-16816860 Msa0877410:five_prime_UTR
GTTGAAGTATTAGAGATGTA+CGG 0.569807 6_1:-16815641 Msa0877410:three_prime_UTR
TGGATGGTAGCTATGTTTCT+GGG 0.569954 6_1:-16815763 Msa0877410:three_prime_UTR
GTGTGCAACTTGCAAAGCAT+GGG 0.574953 6_1:-16815991 Msa0877410:three_prime_UTR
GCTGGCACCTCCGGTGACGA+TGG 0.584463 6_1:+16816760 None:intergenic
GAAACATGTGGCACATGCAA+TGG 0.588365 6_1:-16816137 Msa0877410:three_prime_UTR
ATCGTCACCGGAGGTGCCAG+CGG 0.590387 6_1:-16816758 Msa0877410:CDS
GGTGCATCTATGGCCTCCAA+TGG 0.599803 6_1:+16816637 None:intergenic
CAATGGTGGACGAGTGCGTG+AGG 0.606383 6_1:-16816120 Msa0877410:three_prime_UTR
TGCCGAACAAGGTGAACGCA+TGG 0.615018 6_1:-16816708 Msa0877410:CDS
AGCGTCGCCGGTAGCCATGG+TGG 0.624023 6_1:-16816076 Msa0877410:three_prime_UTR
ACATGTGGCACATGCAATGG+TGG 0.628492 6_1:-16816134 Msa0877410:three_prime_UTR
CGGTTAACTTCAAGCCACCA+TGG 0.628720 6_1:+16816062 None:intergenic
TGCTACGTCACAGTGAATGT+AGG 0.629129 6_1:+16816616 None:intergenic
ATGGTGGACGAGTGCGTGAG+GGG 0.655370 6_1:-16816118 Msa0877410:three_prime_UTR
AATGGTGGACGAGTGCGTGA+GGG 0.675478 6_1:-16816119 Msa0877410:three_prime_UTR
AAAATAGCCATCGTCACCGG+AGG 0.676812 6_1:-16816767 Msa0877410:CDS
GGCATTGTGCGTGAAACATG+TGG 0.681076 6_1:-16816149 Msa0877410:three_prime_UTR
GGTTCTCAACACTAAACATG+TGG 0.686817 6_1:-16815849 Msa0877410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATACATTAACAAAAA+TGG - chr6_1:16815528-16815547 Msa0877410:three_prime_UTR 10.0%
!! ATACAAGAAATAAATATAAT+TGG - chr6_1:16816747-16816766 Msa0877410:CDS 10.0%
!! ATAAAAAAAATAATCAAACA+TGG + chr6_1:16816803-16816822 None:intergenic 10.0%
!!! TTTTTATACATTAACAAAAA+TGG - chr6_1:16815528-16815547 Msa0877410:three_prime_UTR 10.0%
!! ATACAAGAAATAAATATAAT+TGG - chr6_1:16816747-16816766 Msa0877410:CDS 10.0%
!! ATAAAAAAAATAATCAAACA+TGG + chr6_1:16816803-16816822 None:intergenic 10.0%
!!! TTTTGTTAATGTATAAAAAG+TGG + chr6_1:16815527-16815546 None:intergenic 15.0%
!!! TTTTGTTAATGTATAAAAAG+TGG + chr6_1:16815527-16815546 None:intergenic 15.0%
! CACAAATGATTCATGATATT+AGG - chr6_1:16815934-16815953 Msa0877410:three_prime_UTR 25.0%
! ATATTATGTTTAGCAATGCT+GGG - chr6_1:16816103-16816122 Msa0877410:three_prime_UTR 25.0%
!!! AAGACAGTTGATTTGATTTT+TGG - chr6_1:16816463-16816482 Msa0877410:intron 25.0%
! CACAAATGATTCATGATATT+AGG - chr6_1:16815934-16815953 Msa0877410:three_prime_UTR 25.0%
! ATATTATGTTTAGCAATGCT+GGG - chr6_1:16816103-16816122 Msa0877410:three_prime_UTR 25.0%
!!! AAGACAGTTGATTTGATTTT+TGG - chr6_1:16816463-16816482 Msa0877410:intron 25.0%
!!! TGCTAGCCTTTTATATTCAT+GGG + chr6_1:16815499-16815518 None:intergenic 30.0%
!!! ATGCTAGCCTTTTATATTCA+TGG + chr6_1:16815500-16815519 None:intergenic 30.0%
ATGAATATAAAAGGCTAGCA+TGG - chr6_1:16815499-16815518 Msa0877410:three_prime_UTR 30.0%
CATTCACTAACAACAATCTT+AGG - chr6_1:16815560-16815579 Msa0877410:three_prime_UTR 30.0%
TCACACAACATATCTATCTA+TGG + chr6_1:16816037-16816056 None:intergenic 30.0%
AACATAATATCTACCTGTTG+CGG + chr6_1:16816093-16816112 None:intergenic 30.0%
GATATTATGTTTAGCAATGC+TGG - chr6_1:16816102-16816121 Msa0877410:three_prime_UTR 30.0%
GAATGTTAACTGAGAACAAA+TGG + chr6_1:16816183-16816202 None:intergenic 30.0%
TCTAGCAATTTACATGTCAA+TGG + chr6_1:16816433-16816452 None:intergenic 30.0%
!! TGATTTTTGGAGAATACAAG+AGG - chr6_1:16816476-16816495 Msa0877410:intron 30.0%
!! ATACTTCAACTAGAAGTGTT+AGG + chr6_1:16816708-16816727 None:intergenic 30.0%
! GTTGAAGTATTAGAGATGTA+CGG - chr6_1:16816718-16816737 Msa0877410:CDS 30.0%
!!! TGCTAGCCTTTTATATTCAT+GGG + chr6_1:16815499-16815518 None:intergenic 30.0%
!!! ATGCTAGCCTTTTATATTCA+TGG + chr6_1:16815500-16815519 None:intergenic 30.0%
ATGAATATAAAAGGCTAGCA+TGG - chr6_1:16815499-16815518 Msa0877410:three_prime_UTR 30.0%
CATTCACTAACAACAATCTT+AGG - chr6_1:16815560-16815579 Msa0877410:three_prime_UTR 30.0%
TCACACAACATATCTATCTA+TGG + chr6_1:16816037-16816056 None:intergenic 30.0%
AACATAATATCTACCTGTTG+CGG + chr6_1:16816093-16816112 None:intergenic 30.0%
GATATTATGTTTAGCAATGC+TGG - chr6_1:16816102-16816121 Msa0877410:three_prime_UTR 30.0%
GAATGTTAACTGAGAACAAA+TGG + chr6_1:16816183-16816202 None:intergenic 30.0%
TCTAGCAATTTACATGTCAA+TGG + chr6_1:16816433-16816452 None:intergenic 30.0%
!! TGATTTTTGGAGAATACAAG+AGG - chr6_1:16816476-16816495 Msa0877410:intron 30.0%
!! ATACTTCAACTAGAAGTGTT+AGG + chr6_1:16816708-16816727 None:intergenic 30.0%
! GTTGAAGTATTAGAGATGTA+CGG - chr6_1:16816718-16816737 Msa0877410:CDS 30.0%
TAGTGCCCCATGAATATAAA+AGG - chr6_1:16815490-16815509 Msa0877410:three_prime_UTR 35.0%
!!! GCTAGCCTTTTATATTCATG+GGG + chr6_1:16815498-16815517 None:intergenic 35.0%
AACAACAATCTTAGGTTAGC+AGG - chr6_1:16815568-16815587 Msa0877410:three_prime_UTR 35.0%
CAATCGACAGTCAATACTTA+TGG - chr6_1:16815793-16815812 Msa0877410:three_prime_UTR 35.0%
!!! AGTTATTTCTTTTCCGCAAC+AGG - chr6_1:16816077-16816096 Msa0877410:three_prime_UTR 35.0%
TTGTTCTCAGTTAACATTCG+AGG - chr6_1:16816184-16816203 Msa0877410:exon 35.0%
GTGCTTCGACATTATGTAAT+CGG + chr6_1:16816320-16816339 None:intergenic 35.0%
!! AATAATAGGGTTGATGCGTT+CGG - chr6_1:16816342-16816361 Msa0877410:intron 35.0%
GTGAATTGTGTATCACCAAA+TGG - chr6_1:16816397-16816416 Msa0877410:intron 35.0%
!! AATGGTGTTGCTAATCCATT+TGG + chr6_1:16816415-16816434 None:intergenic 35.0%
ACATGTAAATTGCTAGATGC+AGG - chr6_1:16816436-16816455 Msa0877410:intron 35.0%
!! TTTTGGAGAATACAAGAGGT+TGG - chr6_1:16816480-16816499 Msa0877410:intron 35.0%
AATGAATCTGACTTTGTCAC+TGG - chr6_1:16816559-16816578 Msa0877410:intron 35.0%
TAGTGCCCCATGAATATAAA+AGG - chr6_1:16815490-16815509 Msa0877410:three_prime_UTR 35.0%
!!! GCTAGCCTTTTATATTCATG+GGG + chr6_1:16815498-16815517 None:intergenic 35.0%
AACAACAATCTTAGGTTAGC+AGG - chr6_1:16815568-16815587 Msa0877410:three_prime_UTR 35.0%
CAATCGACAGTCAATACTTA+TGG - chr6_1:16815793-16815812 Msa0877410:three_prime_UTR 35.0%
!!! AGTTATTTCTTTTCCGCAAC+AGG - chr6_1:16816077-16816096 Msa0877410:three_prime_UTR 35.0%
TTGTTCTCAGTTAACATTCG+AGG - chr6_1:16816184-16816203 Msa0877410:exon 35.0%
GTGCTTCGACATTATGTAAT+CGG + chr6_1:16816320-16816339 None:intergenic 35.0%
!! AATAATAGGGTTGATGCGTT+CGG - chr6_1:16816342-16816361 Msa0877410:intron 35.0%
GTGAATTGTGTATCACCAAA+TGG - chr6_1:16816397-16816416 Msa0877410:intron 35.0%
!! AATGGTGTTGCTAATCCATT+TGG + chr6_1:16816415-16816434 None:intergenic 35.0%
ACATGTAAATTGCTAGATGC+AGG - chr6_1:16816436-16816455 Msa0877410:intron 35.0%
!! TTTTGGAGAATACAAGAGGT+TGG - chr6_1:16816480-16816499 Msa0877410:intron 35.0%
AATGAATCTGACTTTGTCAC+TGG - chr6_1:16816559-16816578 Msa0877410:intron 35.0%
! AATCAAGTTGCTGCATCCAT+TGG - chr6_1:16815706-16815725 Msa0877410:three_prime_UTR 40.0%
AGTGAATGTAGGTGCATCTA+TGG + chr6_1:16815735-16815754 None:intergenic 40.0%
TCCATCTGATCAAACTGTGT+TGG - chr6_1:16816134-16816153 Msa0877410:three_prime_UTR 40.0%
TCCAACACAGTTTGATCAGA+TGG + chr6_1:16816138-16816157 None:intergenic 40.0%
CTCAGTTAACATTCGAGGAA+TGG - chr6_1:16816189-16816208 Msa0877410:exon 40.0%
ATGTCGAAGCACGCAATAAT+AGG - chr6_1:16816328-16816347 Msa0877410:intron 40.0%
TGTCGAAGCACGCAATAATA+GGG - chr6_1:16816329-16816348 Msa0877410:intron 40.0%
AACTTGCAAAGCATGGGATA+AGG - chr6_1:16816374-16816393 Msa0877410:intron 40.0%
ACTTGCAAAGCATGGGATAA+GGG - chr6_1:16816375-16816394 Msa0877410:intron 40.0%
GGTTCTCAACACTAAACATG+TGG - chr6_1:16816510-16816529 Msa0877410:intron 40.0%
TGGATGGTAGCTATGTTTCT+GGG - chr6_1:16816596-16816615 Msa0877410:CDS 40.0%
! AATCAAGTTGCTGCATCCAT+TGG - chr6_1:16815706-16815725 Msa0877410:three_prime_UTR 40.0%
AGTGAATGTAGGTGCATCTA+TGG + chr6_1:16815735-16815754 None:intergenic 40.0%
TCCATCTGATCAAACTGTGT+TGG - chr6_1:16816134-16816153 Msa0877410:three_prime_UTR 40.0%
TCCAACACAGTTTGATCAGA+TGG + chr6_1:16816138-16816157 None:intergenic 40.0%
CTCAGTTAACATTCGAGGAA+TGG - chr6_1:16816189-16816208 Msa0877410:exon 40.0%
ATGTCGAAGCACGCAATAAT+AGG - chr6_1:16816328-16816347 Msa0877410:intron 40.0%
TGTCGAAGCACGCAATAATA+GGG - chr6_1:16816329-16816348 Msa0877410:intron 40.0%
AACTTGCAAAGCATGGGATA+AGG - chr6_1:16816374-16816393 Msa0877410:intron 40.0%
ACTTGCAAAGCATGGGATAA+GGG - chr6_1:16816375-16816394 Msa0877410:intron 40.0%
GGTTCTCAACACTAAACATG+TGG - chr6_1:16816510-16816529 Msa0877410:intron 40.0%
TGGATGGTAGCTATGTTTCT+GGG - chr6_1:16816596-16816615 Msa0877410:CDS 40.0%
TACCATGCGTTCACCTTGTT+CGG + chr6_1:16815656-16815675 None:intergenic 45.0%
CTTGATTTCCCAACTCGTCT+TGG + chr6_1:16815693-16815712 None:intergenic 45.0%
TGCTACGTCACAGTGAATGT+AGG + chr6_1:16815746-16815765 None:intergenic 45.0%
GAAACATGTGGCACATGCAA+TGG - chr6_1:16816222-16816241 Msa0877410:CDS 45.0%
AGTGTGCAACTTGCAAAGCA+TGG - chr6_1:16816367-16816386 Msa0877410:intron 45.0%
GTGTGCAACTTGCAAAGCAT+GGG - chr6_1:16816368-16816387 Msa0877410:intron 45.0%
GGAGAATACAAGAGGTTGGA+AGG - chr6_1:16816484-16816503 Msa0877410:intron 45.0%
ATACAAGAGGTTGGAAGGAG+TGG - chr6_1:16816489-16816508 Msa0877410:intron 45.0%
TACCATCCACACGAAGATCA+AGG + chr6_1:16816585-16816604 None:intergenic 45.0%
GTGGATGGTAGCTATGTTTC+TGG - chr6_1:16816595-16816614 Msa0877410:CDS 45.0%
TACCATGCGTTCACCTTGTT+CGG + chr6_1:16815656-16815675 None:intergenic 45.0%
CTTGATTTCCCAACTCGTCT+TGG + chr6_1:16815693-16815712 None:intergenic 45.0%
TGCTACGTCACAGTGAATGT+AGG + chr6_1:16815746-16815765 None:intergenic 45.0%
GAAACATGTGGCACATGCAA+TGG - chr6_1:16816222-16816241 Msa0877410:CDS 45.0%
AGTGTGCAACTTGCAAAGCA+TGG - chr6_1:16816367-16816386 Msa0877410:intron 45.0%
GTGTGCAACTTGCAAAGCAT+GGG - chr6_1:16816368-16816387 Msa0877410:intron 45.0%
GGAGAATACAAGAGGTTGGA+AGG - chr6_1:16816484-16816503 Msa0877410:intron 45.0%
ATACAAGAGGTTGGAAGGAG+TGG - chr6_1:16816489-16816508 Msa0877410:intron 45.0%
TACCATCCACACGAAGATCA+AGG + chr6_1:16816585-16816604 None:intergenic 45.0%
GTGGATGGTAGCTATGTTTC+TGG - chr6_1:16816595-16816614 Msa0877410:CDS 45.0%
!!! ATTAACTAATTTTAAATATT+AGG - chr6_1:16815826-16815845 Msa0877410:three_prime_UTR 5.0%
!!! TTTTTTTTATATTCTAAATT+TGG - chr6_1:16816813-16816832 Msa0877410:CDS 5.0%
!!! ATTAACTAATTTTAAATATT+AGG - chr6_1:16815826-16815845 Msa0877410:three_prime_UTR 5.0%
!!! TTTTTTTTATATTCTAAATT+TGG - chr6_1:16816813-16816832 Msa0877410:CDS 5.0%
GGCAAAATAGCCATCGTCAC+CGG - chr6_1:16815589-16815608 Msa0877410:three_prime_UTR 50.0%
AAAATAGCCATCGTCACCGG+AGG - chr6_1:16815592-16815611 Msa0877410:three_prime_UTR 50.0%
GTGCATGTCTTTGCCGAACA+AGG - chr6_1:16815640-16815659 Msa0877410:three_prime_UTR 50.0%
TCCCAACTCGTCTTGGATGT+CGG + chr6_1:16815686-16815705 None:intergenic 50.0%
CAAGTTGCTGCATCCATTGG+AGG - chr6_1:16815709-16815728 Msa0877410:three_prime_UTR 50.0%
GGCATTGTGCGTGAAACATG+TGG - chr6_1:16816210-16816229 Msa0877410:CDS 50.0%
ACATGTGGCACATGCAATGG+TGG - chr6_1:16816225-16816244 Msa0877410:CDS 50.0%
CGGTTAACTTCAAGCCACCA+TGG + chr6_1:16816300-16816319 None:intergenic 50.0%
! GGCAGATGCTGTGTTGTTCT+TGG - chr6_1:16816531-16816550 Msa0877410:intron 50.0%
GGCAAAATAGCCATCGTCAC+CGG - chr6_1:16815589-16815608 Msa0877410:three_prime_UTR 50.0%
AAAATAGCCATCGTCACCGG+AGG - chr6_1:16815592-16815611 Msa0877410:three_prime_UTR 50.0%
GTGCATGTCTTTGCCGAACA+AGG - chr6_1:16815640-16815659 Msa0877410:three_prime_UTR 50.0%
TCCCAACTCGTCTTGGATGT+CGG + chr6_1:16815686-16815705 None:intergenic 50.0%
CAAGTTGCTGCATCCATTGG+AGG - chr6_1:16815709-16815728 Msa0877410:three_prime_UTR 50.0%
GGCATTGTGCGTGAAACATG+TGG - chr6_1:16816210-16816229 Msa0877410:CDS 50.0%
ACATGTGGCACATGCAATGG+TGG - chr6_1:16816225-16816244 Msa0877410:CDS 50.0%
CGGTTAACTTCAAGCCACCA+TGG + chr6_1:16816300-16816319 None:intergenic 50.0%
! GGCAGATGCTGTGTTGTTCT+TGG - chr6_1:16816531-16816550 Msa0877410:intron 50.0%
!! CAGCGGCATTGGCAAAGAGA+CGG - chr6_1:16815618-16815637 Msa0877410:three_prime_UTR 55.0%
TGCCGAACAAGGTGAACGCA+TGG - chr6_1:16815651-16815670 Msa0877410:three_prime_UTR 55.0%
GCCGACATCCAAGACGAGTT+GGG - chr6_1:16815682-16815701 Msa0877410:three_prime_UTR 55.0%
GGTGCATCTATGGCCTCCAA+TGG + chr6_1:16815725-16815744 None:intergenic 55.0%
!! AATGGTGGACGAGTGCGTGA+GGG - chr6_1:16816240-16816259 Msa0877410:CDS 55.0%
GAGGGGTAGCATTGTGTGCA+CGG - chr6_1:16816258-16816277 Msa0877410:CDS 55.0%
CTTCAAGCCACCATGGCTAC+CGG + chr6_1:16816293-16816312 None:intergenic 55.0%
!! CACTGGCCTTGATCTTCGTG+TGG - chr6_1:16816576-16816595 Msa0877410:CDS 55.0%
GGCCTTGATCTTCGTGTGGA+TGG - chr6_1:16816580-16816599 Msa0877410:CDS 55.0%
!! CAGCGGCATTGGCAAAGAGA+CGG - chr6_1:16815618-16815637 Msa0877410:three_prime_UTR 55.0%
TGCCGAACAAGGTGAACGCA+TGG - chr6_1:16815651-16815670 Msa0877410:three_prime_UTR 55.0%
GCCGACATCCAAGACGAGTT+GGG - chr6_1:16815682-16815701 Msa0877410:three_prime_UTR 55.0%
GGTGCATCTATGGCCTCCAA+TGG + chr6_1:16815725-16815744 None:intergenic 55.0%
!! AATGGTGGACGAGTGCGTGA+GGG - chr6_1:16816240-16816259 Msa0877410:CDS 55.0%
GAGGGGTAGCATTGTGTGCA+CGG - chr6_1:16816258-16816277 Msa0877410:CDS 55.0%
CTTCAAGCCACCATGGCTAC+CGG + chr6_1:16816293-16816312 None:intergenic 55.0%
!! CACTGGCCTTGATCTTCGTG+TGG - chr6_1:16816576-16816595 Msa0877410:CDS 55.0%
GGCCTTGATCTTCGTGTGGA+TGG - chr6_1:16816580-16816599 Msa0877410:CDS 55.0%
CGTCTCTTTGCCAATGCCGC+TGG + chr6_1:16815620-16815639 None:intergenic 60.0%
CGCCGACATCCAAGACGAGT+TGG - chr6_1:16815681-16815700 Msa0877410:three_prime_UTR 60.0%
!! CAATGGTGGACGAGTGCGTG+AGG - chr6_1:16816239-16816258 Msa0877410:CDS 60.0%
!! ATGGTGGACGAGTGCGTGAG+GGG - chr6_1:16816241-16816260 Msa0877410:CDS 60.0%
CGTCTCTTTGCCAATGCCGC+TGG + chr6_1:16815620-16815639 None:intergenic 60.0%
CGCCGACATCCAAGACGAGT+TGG - chr6_1:16815681-16815700 Msa0877410:three_prime_UTR 60.0%
!! CAATGGTGGACGAGTGCGTG+AGG - chr6_1:16816239-16816258 Msa0877410:CDS 60.0%
!! ATGGTGGACGAGTGCGTGAG+GGG - chr6_1:16816241-16816260 Msa0877410:CDS 60.0%
!! ATCGTCACCGGAGGTGCCAG+CGG - chr6_1:16815601-16815620 Msa0877410:three_prime_UTR 65.0%
!! ATCGTCACCGGAGGTGCCAG+CGG - chr6_1:16815601-16815620 Msa0877410:three_prime_UTR 65.0%
GCTGGCACCTCCGGTGACGA+TGG + chr6_1:16815602-16815621 None:intergenic 70.0%
!! ACCGGAGGTGCCAGCGGCAT+TGG - chr6_1:16815607-16815626 Msa0877410:three_prime_UTR 70.0%
GCCAATGCCGCTGGCACCTC+CGG + chr6_1:16815611-16815630 None:intergenic 70.0%
GTGTGCACGGCTAGCGTCGC+CGG - chr6_1:16816271-16816290 Msa0877410:intron 70.0%
GCTAGCGTCGCCGGTAGCCA+TGG - chr6_1:16816280-16816299 Msa0877410:intron 70.0%
AGCGTCGCCGGTAGCCATGG+TGG - chr6_1:16816283-16816302 Msa0877410:intron 70.0%
GCTGGCACCTCCGGTGACGA+TGG + chr6_1:16815602-16815621 None:intergenic 70.0%
!! ACCGGAGGTGCCAGCGGCAT+TGG - chr6_1:16815607-16815626 Msa0877410:three_prime_UTR 70.0%
GCCAATGCCGCTGGCACCTC+CGG + chr6_1:16815611-16815630 None:intergenic 70.0%
GTGTGCACGGCTAGCGTCGC+CGG - chr6_1:16816271-16816290 Msa0877410:intron 70.0%
GCTAGCGTCGCCGGTAGCCA+TGG - chr6_1:16816280-16816299 Msa0877410:intron 70.0%
AGCGTCGCCGGTAGCCATGG+TGG - chr6_1:16816283-16816302 Msa0877410:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 16815483 16816898 16815483 ID=Msa0877410;Name=Msa0877410
chr6_1 mRNA 16815483 16816898 16815483 ID=Msa0877410-mRNA-1;Parent=Msa0877410;Name=Msa0877410-mRNA-1;_AED=0.34;_eAED=0.34;_QI=64|1|1|1|1|1|2|719|117
chr6_1 exon 16815483 16816282 16815483 ID=Msa0877410-mRNA-1:exon:4720;Parent=Msa0877410-mRNA-1
chr6_1 exon 16816562 16816898 16816562 ID=Msa0877410-mRNA-1:exon:4719;Parent=Msa0877410-mRNA-1
chr6_1 five_prime_UTR 16816835 16816898 16816835 ID=Msa0877410-mRNA-1:five_prime_utr;Parent=Msa0877410-mRNA-1
chr6_1 CDS 16816562 16816834 16816562 ID=Msa0877410-mRNA-1:cds;Parent=Msa0877410-mRNA-1
chr6_1 CDS 16816202 16816282 16816202 ID=Msa0877410-mRNA-1:cds;Parent=Msa0877410-mRNA-1
chr6_1 three_prime_UTR 16815483 16816201 16815483 ID=Msa0877410-mRNA-1:three_prime_utr;Parent=Msa0877410-mRNA-1
Gene Sequence

>Msa0877410

ATGGCAGAAGCTTCATTCACTAACAACAATCTTAGGTTAGCAGGCAAAATAGCCATCGTCACCGGAGGTGCCAGCGGCATTGGCAAAGAGACGGTGCATGTCTTTGCCGAACAAGGTGAACGCATGGTAGTGATCGCCGACATCCAAGACGAGTTGGGAAATCAAGTTGCTGCATCCATTGGAGGCCATAGATGCACCTACATTCACTGTGACGTAGCAAACGAAGATCAAATCAAAAATCTCGTTCAATCGACAGTCAATACTTATGGACAAGTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCATCTGATCAAACTGTGTTGGAAACTCGACATTTCTCAAGCTGA

Protein sequence

>Msa0877410

MAEASFTNNNLRLAGKIAIVTGGASGIGKETVHVFAEQGERMVVIADIQDELGNQVAASIGGHRCTYIHCDVANEDQIKNLVQSTVNTYGQVDIMFSNAGIASPSDQTVLETRHFSS*