AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261650 MtrunA17_Chr2g0324001 95.652 230 9 1 1 230 1 229 2.03e-160 447
Msa0261650 MtrunA17_Chr2g0318131 68.966 174 54 0 57 230 110 283 2.44e-88 266
Msa0261650 MtrunA17_Chr2g0324031 87.879 33 4 0 194 226 26 58 2.67e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261650 AT4G03410.1 65.939 229 68 2 5 230 13 234 5.27e-108 315
Msa0261650 AT4G03410.2 65.939 229 68 2 5 230 13 234 8.91e-108 316
Msa0261650 AT1G52870.1 53.623 276 79 4 2 230 3 276 1.14e-94 280
Msa0261650 AT1G52870.2 53.623 276 79 4 2 230 3 276 2.14e-93 279

Find 115 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATCTACTTTGTGGTTT+TGG 0.095576 2_2:-60188129 Msa0261650:CDS
CTGTGGAACAAAGGCTTCTT+TGG 0.173165 2_2:-60187500 Msa0261650:CDS
AATATTAAATTATTCTTCTT+TGG 0.183962 2_2:-60184542 Msa0261650:three_prime_UTR
GTTTGGTGCGAAATTAATTA+AGG 0.189591 2_2:+60189684 None:intergenic
TCTTAGTTACCTTAGAATTT+TGG 0.194039 2_2:+60185207 None:intergenic
CACAGGCAGGCTGGAAGCTT+TGG 0.250296 2_2:-60187557 Msa0261650:intron
TTCGCCCATCTGATTACTTA+TGG 0.254055 2_2:-60187531 Msa0261650:CDS
ATCAATGCTGCAATCGTTCT+TGG 0.258440 2_2:-60189388 Msa0261650:CDS
GCTGCAATCGTTCTTGGATT+TGG 0.262559 2_2:-60189382 Msa0261650:CDS
ATATTAAATTATTCTTCTTT+GGG 0.263210 2_2:-60184541 Msa0261650:three_prime_UTR
TCCGCCTATTATATACTTTC+CGG 0.278321 2_2:-60184488 Msa0261650:three_prime_UTR
AAACTGTGTGGTCAGCTATT+TGG 0.279478 2_2:-60188154 Msa0261650:CDS
TGGACTGTATTGAGCTCATC+TGG 0.292811 2_2:-60187476 Msa0261650:exon
TATACAGGATTGTACATAAT+AGG 0.312831 2_2:+60184583 None:intergenic
ATGATCAATTGTGAGCAATT+TGG 0.323543 2_2:+60189345 None:intergenic
TCATCGTATGTTCTTTATAC+AGG 0.324573 2_2:+60184568 None:intergenic
ACAACCGGAAAGTATATAAT+AGG 0.349601 2_2:+60184484 None:intergenic
TCACAATTGATCATGATTAC+TGG 0.351701 2_2:-60189336 Msa0261650:CDS
TTGGCGGTGACGAATTATTC+AGG 0.353350 2_2:-60184709 Msa0261650:three_prime_UTR
GAAAGGAGGTAGGGAGATGT+GGG 0.356126 2_2:+60189582 None:intergenic
TGTGGAACAAAGGCTTCTTT+GGG 0.369696 2_2:-60187499 Msa0261650:CDS
AGAAAGGAGGTAGGGAGATG+TGG 0.370599 2_2:+60189581 None:intergenic
CTTGTTGGGTTTACTCTCCA+TGG 0.385473 2_2:-60188354 Msa0261650:CDS
TATACTTGTTGTGCATCCTT+TGG 0.387734 2_2:-60184728 Msa0261650:three_prime_UTR
TACACCAAGCCAAAATTCTA+AGG 0.390257 2_2:-60185216 Msa0261650:intron
CTATTTAGATCAGGTCTTGT+TGG 0.390942 2_2:-60188369 Msa0261650:CDS
TTTGGTGCGAAATTAATTAA+GGG 0.392774 2_2:+60189685 None:intergenic
AAGAACGATTGCAGCATTGA+TGG 0.399238 2_2:+60189390 None:intergenic
AGTGGAGTTGTCTACTCAAT+TGG 0.403111 2_2:-60188539 Msa0261650:CDS
TTGGAACACCATCTACTTTG+TGG 0.406483 2_2:-60188135 Msa0261650:CDS
TATTTAGATCAGGTCTTGTT+GGG 0.406785 2_2:-60188368 Msa0261650:CDS
TGCGAAATTAATTAAGGGAT+TGG 0.407194 2_2:+60189690 None:intergenic
TGGTCAAAAGCAACTTTAGC+AGG 0.412786 2_2:+60188176 None:intergenic
GGAACTCGGTCACTCTCAAC+TGG 0.421878 2_2:+60189868 None:intergenic
AAATAGCTGACCACACAGTT+TGG 0.423298 2_2:+60188156 None:intergenic
CAGGGACAACCCACCATTGT+TGG 0.429883 2_2:+60188195 None:intergenic
ATAGGCGGATTGTATATAAT+AGG 0.435845 2_2:+60184502 None:intergenic
TCTACAGAGAAAGAAGGTTC+TGG 0.435948 2_2:+60189730 None:intergenic
TTGTCTACTCAATTGGAGAT+TGG 0.442062 2_2:-60188532 Msa0261650:CDS
TAGGCAATCCAATTGTGTTC+AGG 0.443916 2_2:+60188608 None:intergenic
TGCAGCATTGATGGCACGTC+CGG 0.446757 2_2:+60189399 None:intergenic
CAATTGGTAGCATATGTAAC+AGG 0.447107 2_2:-60189799 Msa0261650:five_prime_UTR
GAGATGTGGGGCTTTGAGAA+GGG 0.453423 2_2:+60189595 None:intergenic
GGTTTCTTCTTCGCCTTCCA+AGG 0.454215 2_2:-60189458 Msa0261650:CDS
ACCCAAAACCACAAAGTAGA+TGG 0.457211 2_2:+60188127 None:intergenic
AGAGGATCGTGAAGCAGCTT+CGG 0.458460 2_2:-60189512 Msa0261650:CDS
CAAAATATATAGTGCTATGA+AGG 0.459856 2_2:-60188423 Msa0261650:intron
GGTTCTGGTTGAGAATTGAT+TGG 0.465415 2_2:+60189745 None:intergenic
TTTGGGAAGAGAAAGGAGGT+AGG 0.471467 2_2:+60189572 None:intergenic
CGGTCACTCTCAACTGGAAG+AGG 0.472790 2_2:+60189874 None:intergenic
TCTTTCTTTAAATTCTCTCA+TGG 0.476604 2_2:-60189653 Msa0261650:exon
AAATTAATTAAGGGATTGGT+GGG 0.477447 2_2:+60189694 None:intergenic
AAGTGATAATAGATTACAAC+CGG 0.480845 2_2:+60184469 None:intergenic
GGAGATGTGGGGCTTTGAGA+AGG 0.481259 2_2:+60189594 None:intergenic
AATATGTGCCTGAACACAAT+TGG 0.484652 2_2:-60188616 Msa0261650:CDS
TTTGATTCTACAGAGAAAGA+AGG 0.485854 2_2:+60189724 None:intergenic
AATTGGAGATTGGATTGCTC+AGG 0.486533 2_2:-60188522 Msa0261650:intron
TGCTTTCAGAGATTGCTCAT+AGG 0.490513 2_2:+60188589 None:intergenic
GAGGAAGTGTCAGAAACAAC+AGG 0.491215 2_2:-60185245 Msa0261650:three_prime_UTR
TTAGCTAAAATGGCAATAAG+TGG 0.494093 2_2:-60188557 Msa0261650:CDS
GGTCACTCTCAACTGGAAGA+GGG 0.499254 2_2:+60189875 None:intergenic
TTGGGAAGAGAAAGGAGGTA+GGG 0.500264 2_2:+60189573 None:intergenic
AATATGCTTCACAGGCAGGC+TGG 0.502341 2_2:-60187566 Msa0261650:intron
AGGATCTCAATTGAAGTTGA+AGG 0.512181 2_2:-60184802 Msa0261650:three_prime_UTR
GAAATTAATTAAGGGATTGG+TGG 0.516216 2_2:+60189693 None:intergenic
TACTTATGGTGTGGTTCCTG+TGG 0.517838 2_2:-60187517 Msa0261650:CDS
ACTTGTTGTGCATCCTTTGG+CGG 0.518337 2_2:-60184725 Msa0261650:three_prime_UTR
AGCAACCTCTGTGATACCCT+TGG 0.523659 2_2:+60189441 None:intergenic
GAATAATTCGTCACCGCCAA+AGG 0.526939 2_2:+60184712 None:intergenic
GGGGCTTTGAGAAGGGAAGG+AGG 0.527578 2_2:+60189602 None:intergenic
TTAAATTATTCTTCTTTGGG+GGG 0.531443 2_2:-60184538 Msa0261650:three_prime_UTR
CGAGCGCGGCTATTTAGATC+AGG 0.532514 2_2:-60188378 Msa0261650:CDS
GTCACTCTCAACTGGAAGAG+GGG 0.536779 2_2:+60189876 None:intergenic
GTATAAAGAACATACGATGA+TGG 0.536818 2_2:-60184565 Msa0261650:three_prime_UTR
CAAAGAAGCCTTTGTTCCAC+AGG 0.539036 2_2:+60187501 None:intergenic
TTGGTTTGGGAAGAGAAAGG+AGG 0.539173 2_2:+60189568 None:intergenic
TGTGGGGCTTTGAGAAGGGA+AGG 0.541270 2_2:+60189599 None:intergenic
GGAACAAAGGCTTCTTTGGG+TGG 0.543292 2_2:-60187496 Msa0261650:CDS
TATTAAATTATTCTTCTTTG+GGG 0.545614 2_2:-60184540 Msa0261650:three_prime_UTR
CCACACCATAAGTAATCAGA+TGG 0.560187 2_2:+60187526 None:intergenic
GTTTCTTCTTCGCCTTCCAA+GGG 0.562683 2_2:-60189457 Msa0261650:CDS
GGACTGTATTGAGCTCATCT+GGG 0.562988 2_2:-60187475 Msa0261650:exon
AATTGAAGTTGAAAATTCGA+AGG 0.567007 2_2:-60184822 Msa0261650:three_prime_UTR
GGATTTCGATATACTACATA+CGG 0.568022 2_2:-60189949 Msa0261650:five_prime_UTR
CCATCTGATTACTTATGGTG+TGG 0.569311 2_2:-60187526 Msa0261650:CDS
AATAGTGAGAAAGAGATCCA+TGG 0.572551 2_2:+60188337 None:intergenic
TCACTCTCAACTGGAAGAGG+GGG 0.574559 2_2:+60189877 None:intergenic
ATTAAATTATTCTTCTTTGG+GGG 0.575116 2_2:-60184539 Msa0261650:three_prime_UTR
TGACTCAGCTTAAAATTCGA+AGG 0.575848 2_2:-60184850 Msa0261650:three_prime_UTR
ACTACATACGGCAATTGAAG+TGG 0.577583 2_2:-60189937 Msa0261650:five_prime_UTR
ACAACCCACCATTGTTGGAA+AGG 0.581867 2_2:+60188200 None:intergenic
GGGCTTTGAGAAGGGAAGGA+GGG 0.590501 2_2:+60189603 None:intergenic
ATCAGAATCCCGAAAATCTG+AGG 0.598586 2_2:-60185264 Msa0261650:three_prime_UTR
GGTCAAAAGCAACTTTAGCA+GGG 0.608265 2_2:+60188177 None:intergenic
TAAGTAATCAGATGGGCGAA+AGG 0.609767 2_2:+60187534 None:intergenic
CATAATCAGCTCCGTTACAG+AGG 0.615880 2_2:-60189530 Msa0261650:CDS
TGCTTCACGATCCTCTGTAA+CGG 0.624438 2_2:+60189519 None:intergenic
CAATAATCACCTCACACAGT+TGG 0.632374 2_2:+60188310 None:intergenic
CGCACGCACAATGTCAACGT+GGG 0.632810 2_2:-60189970 None:intergenic
AATAGAAGAAGCAACTGACA+TGG 0.637698 2_2:+60189630 None:intergenic
ACTGACACTGATATTCTCAC+CGG 0.639131 2_2:-60189418 Msa0261650:CDS
ACCGGAAAGTATATAATAGG+CGG 0.640507 2_2:+60184487 None:intergenic
GGCGGATTGTATATAATAGG+CGG 0.640755 2_2:+60184505 None:intergenic
ACAGGATTGTACATAATAGG+CGG 0.644993 2_2:+60184586 None:intergenic
GTGTGGTTCCTGTGGAACAA+AGG 0.645875 2_2:-60187509 Msa0261650:CDS
ACCTCTGTGATACCCTTGGA+AGG 0.647729 2_2:+60189445 None:intergenic
CACTCTCAACTGGAAGAGGG+GGG 0.650595 2_2:+60189878 None:intergenic
CTATTACTACCAACTGTGTG+AGG 0.652660 2_2:-60188319 Msa0261650:intron
AAAGGAGGTAGGGAGATGTG+GGG 0.663791 2_2:+60189583 None:intergenic
CACACCATAAGTAATCAGAT+GGG 0.679652 2_2:+60187527 None:intergenic
GCGAAGAAGAAACCTCCTCG+AGG 0.711152 2_2:+60189467 None:intergenic
AAAAGACAGAAAAGTCCTCG+AGG 0.718772 2_2:-60189482 Msa0261650:CDS
GCCTTCCAAGGGTATCACAG+AGG 0.723856 2_2:-60189446 Msa0261650:CDS
AGACAGAAAAGTCCTCGAGG+AGG 0.726431 2_2:-60189479 Msa0261650:CDS
TCGCACGCACAATGTCAACG+TGG 0.743406 2_2:-60189971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAGTTTTAAGAATAAATA+GGG - chr2_2:60187870-60187889 Msa0261650:intron 10.0%
!!! AATATTATTCTAAAATCAAA+AGG - chr2_2:60187982-60188001 Msa0261650:intron 10.0%
!!! ATATTATTCTAAAATCAAAA+GGG - chr2_2:60187983-60188002 Msa0261650:intron 10.0%
!!! TTAAGTTTTAAGAATAAATA+GGG - chr2_2:60187870-60187889 Msa0261650:intron 10.0%
!!! AATATTATTCTAAAATCAAA+AGG - chr2_2:60187982-60188001 Msa0261650:intron 10.0%
!!! ATATTATTCTAAAATCAAAA+GGG - chr2_2:60187983-60188002 Msa0261650:intron 10.0%
!!! TTTTTTTTTTTTTTGTTTCT+AGG - chr2_2:60189125-60189144 Msa0261650:intron 10.0%
!! AATATTAAATTATTCTTCTT+TGG - chr2_2:60189884-60189903 Msa0261650:five_prime_UTR 10.0%
!! ATATTAAATTATTCTTCTTT+GGG - chr2_2:60189885-60189904 Msa0261650:five_prime_UTR 10.0%
!! ATAAATTAAGAAACATAGTT+TGG + chr2_2:60185536-60185555 None:intergenic 15.0%
!! TTAAATGAGATTTAATTACA+AGG + chr2_2:60187212-60187231 None:intergenic 15.0%
!! AATTAAATCTCATTTAAGAA+TGG - chr2_2:60187215-60187234 Msa0261650:intron 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG - chr2_2:60187381-60187400 Msa0261650:intron 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG + chr2_2:60187381-60187400 None:intergenic 15.0%
!!! GTTAAGTTTTAAGAATAAAT+AGG - chr2_2:60187869-60187888 Msa0261650:intron 15.0%
!!! TAAGTTTTAAGAATAAATAG+GGG - chr2_2:60187871-60187890 Msa0261650:intron 15.0%
!! TGATATAGAAGAATAAAATA+GGG + chr2_2:60188014-60188033 None:intergenic 15.0%
!!! TATTTTTGAGAAAAAAATAC+AGG + chr2_2:60188651-60188670 None:intergenic 15.0%
!!! GTTAAGTTTTAAGAATAAAT+AGG - chr2_2:60187869-60187888 Msa0261650:intron 15.0%
!!! TAAGTTTTAAGAATAAATAG+GGG - chr2_2:60187871-60187890 Msa0261650:intron 15.0%
!! TGATATAGAAGAATAAAATA+GGG + chr2_2:60188014-60188033 None:intergenic 15.0%
!!! GAATTAGAATTTTTAATCAT+AGG + chr2_2:60189378-60189397 None:intergenic 15.0%
!! TATTAAATTATTCTTCTTTG+GGG - chr2_2:60189886-60189905 Msa0261650:five_prime_UTR 15.0%
!!! CAATTGTATGAGTTTTAAAA+TGG + chr2_2:60184613-60184632 None:intergenic 20.0%
!!! CATTTTAAAACTCATACAAT+TGG - chr2_2:60184611-60184630 Msa0261650:three_prime_UTR 20.0%
!!! AAAGAAAGATTTTGTTTGTT+TGG + chr2_2:60184762-60184781 None:intergenic 20.0%
!! ATAGAAAAAGAAGCAAAATT+TGG + chr2_2:60185141-60185160 None:intergenic 20.0%
!!! TCAATAATAAGCTAGTTTAT+TGG + chr2_2:60185212-60185231 None:intergenic 20.0%
!!! TGTATTTTCTGTATTGTAAA+TGG - chr2_2:60185726-60185745 Msa0261650:intron 20.0%
!!! TAAGAACTTATTTGTTTCTT+AGG - chr2_2:60186392-60186411 Msa0261650:intron 20.0%
!!! AAGAACTTATTTGTTTCTTA+GGG - chr2_2:60186393-60186412 Msa0261650:intron 20.0%
!! GATAAAAAATCAATTCAAAC+AGG + chr2_2:60186419-60186438 None:intergenic 20.0%
!!! TGAATTGATTTTTTATCTAC+TGG - chr2_2:60186422-60186441 Msa0261650:intron 20.0%
!! TGTTACAAAAATAAAGCAAA+AGG - chr2_2:60186682-60186701 Msa0261650:intron 20.0%
!!! ACACAATTTTTTTTTTCAGT+CGG - chr2_2:60187032-60187051 Msa0261650:intron 20.0%
!! CATTCATTAAATGATGTATT+TGG - chr2_2:60187406-60187425 Msa0261650:intron 20.0%
!! ATAATTAATTAAGTCAGTAG+TGG - chr2_2:60187843-60187862 Msa0261650:intron 20.0%
!! TAATTAATTAAGTCAGTAGT+GGG - chr2_2:60187844-60187863 Msa0261650:intron 20.0%
!! CTGATATAGAAGAATAAAAT+AGG + chr2_2:60188015-60188034 None:intergenic 20.0%
!!! TTTTATTCTTCTATATCAGT+TGG - chr2_2:60188016-60188035 Msa0261650:intron 20.0%
!! ATAATTAATTAAGTCAGTAG+TGG - chr2_2:60187843-60187862 Msa0261650:intron 20.0%
!! TAATTAATTAAGTCAGTAGT+GGG - chr2_2:60187844-60187863 Msa0261650:intron 20.0%
!! CTGATATAGAAGAATAAAAT+AGG + chr2_2:60188015-60188034 None:intergenic 20.0%
!!! TTTTATTCTTCTATATCAGT+TGG - chr2_2:60188016-60188035 Msa0261650:intron 20.0%
!! CAATATATTGAGAAAATTGA+TGG + chr2_2:60189419-60189438 None:intergenic 20.0%
!! AATAAAACTGCGTAAAAATA+TGG - chr2_2:60189483-60189502 Msa0261650:CDS 20.0%
!! ATAAAACTGCGTAAAAATAT+GGG - chr2_2:60189484-60189503 Msa0261650:CDS 20.0%
!! AAAAACTATATATAGGTTCA+TGG - chr2_2:60189509-60189528 Msa0261650:CDS 20.0%
!! ATTAAATTATTCTTCTTTGG+GGG - chr2_2:60189887-60189906 Msa0261650:five_prime_UTR 20.0%
!!! ATAGCATCTTTATTTTACGT+GGG + chr2_2:60184582-60184601 None:intergenic 25.0%
!!! AATAGCATCTTTATTTTACG+TGG + chr2_2:60184583-60184602 None:intergenic 25.0%
!!! TTGTATGAGTTTTAAAATGG+AGG + chr2_2:60184610-60184629 None:intergenic 25.0%
!! AAATTAATTAAGGGATTGGT+GGG + chr2_2:60184735-60184754 None:intergenic 25.0%
!! TTTGGTGCGAAATTAATTAA+GGG + chr2_2:60184744-60184763 None:intergenic 25.0%
! TCTTTCTTTAAATTCTCTCA+TGG - chr2_2:60184773-60184792 Msa0261650:three_prime_UTR 25.0%
! CTTCAAGTAAGTTATAACTT+CGG + chr2_2:60185303-60185322 None:intergenic 25.0%
! TGCTATAATCTAGTAGAAAA+AGG - chr2_2:60185338-60185357 Msa0261650:intron 25.0%
!! TATTTTCTAATGACTCTGTT+CGG + chr2_2:60185443-60185462 None:intergenic 25.0%
! AGTTTGGTATAGATAGAATA+TGG + chr2_2:60185520-60185539 None:intergenic 25.0%
! TAAAGCCAAATTAAGAAACA+CGG + chr2_2:60185580-60185599 None:intergenic 25.0%
! ATGTATTATAGTAAAGCAGA+CGG - chr2_2:60185679-60185698 Msa0261650:intron 25.0%
! AAGAAGTTGAAAACTGATTA+GGG - chr2_2:60185749-60185768 Msa0261650:intron 25.0%
!!! AAATCCAGTTTTAGCTAAAA+TGG - chr2_2:60185859-60185878 Msa0261650:intron 25.0%
!! AAATTATGAAGTGCTTATGT+TGG - chr2_2:60185951-60185970 Msa0261650:intron 25.0%
!! CTTCATAGCACTATATATTT+TGG + chr2_2:60186005-60186024 None:intergenic 25.0%
! CAAAATATATAGTGCTATGA+AGG - chr2_2:60186003-60186022 Msa0261650:intron 25.0%
! ATTATTGTACATCTTTGGTT+TGG - chr2_2:60186132-60186151 Msa0261650:intron 25.0%
!! AGTCAAACTATTTTCATACA+AGG + chr2_2:60186497-60186516 None:intergenic 25.0%
!! GTAATTTTATTGTACTGTCA+CGG - chr2_2:60186621-60186640 Msa0261650:intron 25.0%
! GAGAAAATTGATGAAAGAAA+GGG - chr2_2:60186704-60186723 Msa0261650:intron 25.0%
! AGAAAATTGATGAAAGAAAG+GGG - chr2_2:60186705-60186724 Msa0261650:intron 25.0%
! AAAAACCAAACCAGATTAAT+TGG - chr2_2:60187118-60187137 Msa0261650:intron 25.0%
! TATGAGATACTTATCCAAAA+GGG + chr2_2:60187186-60187205 None:intergenic 25.0%
! AATATAGAGAAGAGTAGAAA+AGG - chr2_2:60187246-60187265 Msa0261650:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr2_2:60187480-60187499 Msa0261650:exon 25.0%
!! AATATTTCACAAAGCATCAA+GGG + chr2_2:60187599-60187618 None:intergenic 25.0%
! AAAAACCAGACCAATTTAAT+TGG - chr2_2:60187672-60187691 Msa0261650:intron 25.0%
! AAAATCCAATTAAATTGGTC+TGG + chr2_2:60187680-60187699 None:intergenic 25.0%
! AACGCAAAATCCAATTAAAT+TGG + chr2_2:60187685-60187704 None:intergenic 25.0%
!!! ATTTATTTGGCGTTTTAAAC+CGG - chr2_2:60188297-60188316 Msa0261650:intron 25.0%
! TTGCAATAAAGAAATGAGTA+TGG - chr2_2:60188579-60188598 Msa0261650:CDS 25.0%
! TGCAATAAAGAAATGAGTAT+GGG - chr2_2:60188580-60188599 Msa0261650:CDS 25.0%
!! TGTCATTATACTTCAAGTTA+TGG - chr2_2:60188728-60188747 Msa0261650:intron 25.0%
!! GTCATTATACTTCAAGTTAT+GGG - chr2_2:60188729-60188748 Msa0261650:intron 25.0%
!! TCTTAGTTACCTTAGAATTT+TGG + chr2_2:60189222-60189241 None:intergenic 25.0%
! ATGGCAGAAAAATAATACAA+CGG + chr2_2:60189248-60189267 None:intergenic 25.0%
!! TATTTTTCTGCCATGTTTTA+AGG - chr2_2:60189254-60189273 Msa0261650:intron 25.0%
! TAAAACTGCGTAAAAATATG+GGG - chr2_2:60189485-60189504 Msa0261650:CDS 25.0%
! ATGGGGAAAAAACTATATAT+AGG - chr2_2:60189502-60189521 Msa0261650:CDS 25.0%
! AATTGAAGTTGAAAATTCGA+AGG - chr2_2:60189604-60189623 Msa0261650:CDS 25.0%
!! TATGTTTTACTTCTTCTTTG+AGG - chr2_2:60189806-60189825 Msa0261650:five_prime_UTR 25.0%
!! ATGTTTTACTTCTTCTTTGA+GGG - chr2_2:60189807-60189826 Msa0261650:five_prime_UTR 25.0%
! TATACAGGATTGTACATAAT+AGG + chr2_2:60189846-60189865 None:intergenic 25.0%
! TTAAATTATTCTTCTTTGGG+GGG - chr2_2:60189888-60189907 Msa0261650:five_prime_UTR 25.0%
! AAGTGATAATAGATTACAAC+CGG + chr2_2:60189960-60189979 None:intergenic 25.0%
GGATTTCGATATACTACATA+CGG - chr2_2:60184477-60184496 Msa0261650:three_prime_UTR 30.0%
TTTGATTCTACAGAGAAAGA+AGG + chr2_2:60184705-60184724 None:intergenic 30.0%
GAAATTAATTAAGGGATTGG+TGG + chr2_2:60184736-60184755 None:intergenic 30.0%
TGCGAAATTAATTAAGGGAT+TGG + chr2_2:60184739-60184758 None:intergenic 30.0%
!! GTTTGGTGCGAAATTAATTA+AGG + chr2_2:60184745-60184764 None:intergenic 30.0%
ATGATCAATTGTGAGCAATT+TGG + chr2_2:60185084-60185103 None:intergenic 30.0%
TCACAATTGATCATGATTAC+TGG - chr2_2:60185090-60185109 Msa0261650:intron 30.0%
GATTGAACTTAAGCTTATAG+AGG - chr2_2:60185167-60185186 Msa0261650:intron 30.0%
! ATTGAGTTGTTTATCCAAAG+AGG - chr2_2:60185478-60185497 Msa0261650:intron 30.0%
TTTGACTATAATGATCTGTC+AGG + chr2_2:60185604-60185623 None:intergenic 30.0%
TGTATTATAGTAAAGCAGAC+GGG - chr2_2:60185680-60185699 Msa0261650:intron 30.0%
GAAGAAGTTGAAAACTGATT+AGG - chr2_2:60185748-60185767 Msa0261650:intron 30.0%
TGATTAGGGTTTCATAATTC+AGG - chr2_2:60185763-60185782 Msa0261650:intron 30.0%
GATTAGGGTTTCATAATTCA+GGG - chr2_2:60185764-60185783 Msa0261650:intron 30.0%
!!! ATTGCCATTTTAGCTAAAAC+TGG + chr2_2:60185866-60185885 None:intergenic 30.0%
TTAGCTAAAATGGCAATAAG+TGG - chr2_2:60185869-60185888 Msa0261650:intron 30.0%
!! CTCAGGTATGTTTTTGAATT+TGG - chr2_2:60185921-60185940 Msa0261650:intron 30.0%
!! TATTTAGATCAGGTCTTGTT+GGG - chr2_2:60186058-60186077 Msa0261650:intron 30.0%
AGGTGATTATTGTACATCTT+TGG - chr2_2:60186127-60186146 Msa0261650:intron 30.0%
!!! TACATCTTTGGTTTGGATTT+TGG - chr2_2:60186139-60186158 Msa0261650:intron 30.0%
!!! GATTTTTTATCTACTGGCAT+AGG - chr2_2:60186428-60186447 Msa0261650:intron 30.0%
GGAGAAAATTGATGAAAGAA+AGG - chr2_2:60186703-60186722 Msa0261650:intron 30.0%
TAGTTCAAACCAACAATTCA+AGG - chr2_2:60186744-60186763 Msa0261650:intron 30.0%
ATTGTTCATCCTTGAATTGT+TGG + chr2_2:60186756-60186775 None:intergenic 30.0%
TCTAAACAAACAATTGTCTG+TGG + chr2_2:60186804-60186823 None:intergenic 30.0%
!!! TTGGTTTTTTTCCCTAGTTT+GGG + chr2_2:60187107-60187126 None:intergenic 30.0%
!!! TTTGGTTTTTTTCCCTAGTT+TGG + chr2_2:60187108-60187127 None:intergenic 30.0%
ACAATTCACACCAATTAATC+TGG + chr2_2:60187131-60187150 None:intergenic 30.0%
!!! TTTTAAGTTCTTTGAGTCGT+TGG - chr2_2:60187153-60187172 Msa0261650:intron 30.0%
GTATGAGATACTTATCCAAA+AGG + chr2_2:60187187-60187206 None:intergenic 30.0%
AGAGTAGAAAAGGAAAACAA+AGG - chr2_2:60187256-60187275 Msa0261650:intron 30.0%
! CAATATTTCACAAAGCATCA+AGG + chr2_2:60187600-60187619 None:intergenic 30.0%
GTGAAATATTGAGAGTTTGT+CGG - chr2_2:60187609-60187628 Msa0261650:intron 30.0%
AAATGTTGAACAGAATGCAT+TGG - chr2_2:60187637-60187656 Msa0261650:intron 30.0%
! TAATTGGATTTTGCGTTCAT+TGG - chr2_2:60187688-60187707 Msa0261650:intron 30.0%
! AATTGGATTTTGCGTTCATT+GGG - chr2_2:60187689-60187708 Msa0261650:intron 30.0%
AGTAGTTAATTACGCAGTTA+TGG - chr2_2:60187799-60187818 Msa0261650:intron 30.0%
ATAATATTGCAGAACTTCGA+GGG + chr2_2:60187970-60187989 None:intergenic 30.0%
AATAATATTGCAGAACTTCG+AGG + chr2_2:60187971-60187990 None:intergenic 30.0%
GCAATAAAGAAATGAGTATG+GGG - chr2_2:60188581-60188600 Msa0261650:CDS 30.0%
ACAAACAGAGTATATGATCA+AGG - chr2_2:60188676-60188695 Msa0261650:intron 30.0%
AGTAGTTAATTACGCAGTTA+TGG - chr2_2:60187799-60187818 Msa0261650:intron 30.0%
ATAATATTGCAGAACTTCGA+GGG + chr2_2:60187970-60187989 None:intergenic 30.0%
AATAATATTGCAGAACTTCG+AGG + chr2_2:60187971-60187990 None:intergenic 30.0%
GTACTATTACTGTTAGAATG+TGG + chr2_2:60189335-60189354 None:intergenic 30.0%
!!! TTTTTACGCAGTTTTATTCC+TGG + chr2_2:60189481-60189500 None:intergenic 30.0%
TCATCGTATGTTCTTTATAC+AGG + chr2_2:60189861-60189880 None:intergenic 30.0%
GTATAAAGAACATACGATGA+TGG - chr2_2:60189861-60189880 Msa0261650:five_prime_UTR 30.0%
!! ATAGGCGGATTGTATATAAT+AGG + chr2_2:60189927-60189946 None:intergenic 30.0%
! ACAACCGGAAAGTATATAAT+AGG + chr2_2:60189945-60189964 None:intergenic 30.0%
!!! CTTTATTTTACGTGGGAACT+CGG + chr2_2:60184575-60184594 None:intergenic 35.0%
! CAATTGGTAGCATATGTAAC+AGG - chr2_2:60184627-60184646 Msa0261650:three_prime_UTR 35.0%
AATAGAAGAAGCAACTGACA+TGG + chr2_2:60184799-60184818 None:intergenic 35.0%
!!! TTTTTGGTTTGGGAAGAGAA+AGG + chr2_2:60184864-60184883 None:intergenic 35.0%
!!! TATGATACGACGTCGTTTTT+TGG + chr2_2:60184880-60184899 None:intergenic 35.0%
ATCTCATATTCACACCTCTT+TGG + chr2_2:60185495-60185514 None:intergenic 35.0%
GTATTATAGTAAAGCAGACG+GGG - chr2_2:60185681-60185700 Msa0261650:intron 35.0%
AATATGTGCCTGAACACAAT+TGG - chr2_2:60185810-60185829 Msa0261650:intron 35.0%
TTGTCTACTCAATTGGAGAT+TGG - chr2_2:60185894-60185913 Msa0261650:intron 35.0%
! ATGAAGTGCTTATGTTGGAT+AGG - chr2_2:60185956-60185975 Msa0261650:intron 35.0%
! TGAAGTGCTTATGTTGGATA+GGG - chr2_2:60185957-60185976 Msa0261650:intron 35.0%
GCTCGATCAAACTCAAAAAT+AGG + chr2_2:60186033-60186052 None:intergenic 35.0%
! CTATTTAGATCAGGTCTTGT+TGG - chr2_2:60186057-60186076 Msa0261650:intron 35.0%
AATAGTGAGAAAGAGATCCA+TGG + chr2_2:60186092-60186111 None:intergenic 35.0%
! CTCTTTTTCCTTTCCAACAA+TGG - chr2_2:60186218-60186237 Msa0261650:intron 35.0%
! TTTTTCCTTTCCAACAATGG+TGG - chr2_2:60186221-60186240 Msa0261650:intron 35.0%
! TTTTCCTTTCCAACAATGGT+GGG - chr2_2:60186222-60186241 Msa0261650:intron 35.0%
! ACCATCTACTTTGTGGTTTT+GGG - chr2_2:60186298-60186317 Msa0261650:intron 35.0%
GACTCTTTGGATAACATCTA+TGG - chr2_2:60186334-60186353 Msa0261650:intron 35.0%
TAAGTTCTTACAGTGAGCAT+GGG + chr2_2:60186382-60186401 None:intergenic 35.0%
ATAAGTTCTTACAGTGAGCA+TGG + chr2_2:60186383-60186402 None:intergenic 35.0%
ATTACAGCATGTGAACAAAG+AGG + chr2_2:60186606-60186625 None:intergenic 35.0%
TTCACTCTAATATGCTTCAC+AGG - chr2_2:60186852-60186871 Msa0261650:intron 35.0%
CACACCATAAGTAATCAGAT+GGG + chr2_2:60186902-60186921 None:intergenic 35.0%
TCACACCAATTAATCTGGTT+TGG + chr2_2:60187126-60187145 None:intergenic 35.0%
GAAAAGGAAAACAAAGGAGA+AGG - chr2_2:60187262-60187281 Msa0261650:intron 35.0%
TTCATTATTGTAGCCGATTG+CGG + chr2_2:60187310-60187329 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr2_2:60187367-60187386 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr2_2:60187368-60187387 None:intergenic 35.0%
! TTAATTAAGTCAGTAGTGGG+AGG - chr2_2:60187847-60187866 Msa0261650:intron 35.0%
! ATCAGTTGGTTTCTATCAAC+TGG - chr2_2:60188030-60188049 Msa0261650:intron 35.0%
AAACTCCATTTCTGCCATAA+CGG + chr2_2:60188086-60188105 None:intergenic 35.0%
TGTTCTCGCTTGCATTTATT+TGG - chr2_2:60188284-60188303 Msa0261650:intron 35.0%
AGGTTTGGAAGATGTAGAAA+TGG - chr2_2:60188465-60188484 Msa0261650:intron 35.0%
GGTTTGGAAGATGTAGAAAT+GGG - chr2_2:60188466-60188485 Msa0261650:intron 35.0%
GTTTGGAAGATGTAGAAATG+GGG - chr2_2:60188467-60188486 Msa0261650:intron 35.0%
CACAATCATGACATGCATAT+GGG + chr2_2:60188518-60188537 None:intergenic 35.0%
! TTAATTAAGTCAGTAGTGGG+AGG - chr2_2:60187847-60187866 Msa0261650:intron 35.0%
TACACCAAGCCAAAATTCTA+AGG - chr2_2:60189210-60189229 Msa0261650:intron 35.0%
!!! GTTACCTTAGAATTTTGGCT+TGG + chr2_2:60189217-60189236 None:intergenic 35.0%
ATTTCGTGATAAGTTTCACC+AGG + chr2_2:60189291-60189310 None:intergenic 35.0%
! AGTCATCAAATGCTTTTGCA+AGG + chr2_2:60189561-60189580 None:intergenic 35.0%
TGACTCAGCTTAAAATTCGA+AGG - chr2_2:60189576-60189595 Msa0261650:CDS 35.0%
AGGATCTCAATTGAAGTTGA+AGG - chr2_2:60189596-60189615 Msa0261650:CDS 35.0%
!! TATACTTGTTGTGCATCCTT+TGG - chr2_2:60189698-60189717 Msa0261650:five_prime_UTR 35.0%
ACAGGATTGTACATAATAGG+CGG + chr2_2:60189843-60189862 None:intergenic 35.0%
TCCGCCTATTATATACTTTC+CGG - chr2_2:60189938-60189957 Msa0261650:five_prime_UTR 35.0%
! ACCGGAAAGTATATAATAGG+CGG + chr2_2:60189942-60189961 None:intergenic 35.0%
ACTACATACGGCAATTGAAG+TGG - chr2_2:60184489-60184508 Msa0261650:three_prime_UTR 40.0%
! GGTTCTGGTTGAGAATTGAT+TGG + chr2_2:60184684-60184703 None:intergenic 40.0%
TCTACAGAGAAAGAAGGTTC+TGG + chr2_2:60184699-60184718 None:intergenic 40.0%
!!! ACGACGTCGTTTTTTGGTTT+GGG + chr2_2:60184874-60184893 None:intergenic 40.0%
!!! TACGACGTCGTTTTTTGGTT+TGG + chr2_2:60184875-60184894 None:intergenic 40.0%
AAAAGACAGAAAAGTCCTCG+AGG - chr2_2:60184944-60184963 Msa0261650:three_prime_UTR 40.0%
ACTGACACTGATATTCTCAC+CGG - chr2_2:60185008-60185027 Msa0261650:intron 40.0%
! AAGAACGATTGCAGCATTGA+TGG + chr2_2:60185039-60185058 None:intergenic 40.0%
ATCAATGCTGCAATCGTTCT+TGG - chr2_2:60185038-60185057 Msa0261650:intron 40.0%
CGTTGCCGTGTTTCTTAATT+TGG - chr2_2:60185572-60185591 Msa0261650:intron 40.0%
AGGGTTTCATAATTCAGGGT+TGG - chr2_2:60185768-60185787 Msa0261650:intron 40.0%
TAGGCAATCCAATTGTGTTC+AGG + chr2_2:60185821-60185840 None:intergenic 40.0%
TGCTTTCAGAGATTGCTCAT+AGG + chr2_2:60185840-60185859 None:intergenic 40.0%
AGTGGAGTTGTCTACTCAAT+TGG - chr2_2:60185887-60185906 Msa0261650:intron 40.0%
AATTGGAGATTGGATTGCTC+AGG - chr2_2:60185904-60185923 Msa0261650:intron 40.0%
!!! TTTTTGAGTTTGATCGAGCG+CGG - chr2_2:60186034-60186053 Msa0261650:intron 40.0%
CTATTACTACCAACTGTGTG+AGG - chr2_2:60186107-60186126 Msa0261650:intron 40.0%
CAATAATCACCTCACACAGT+TGG + chr2_2:60186119-60186138 None:intergenic 40.0%
TTGTTTGCGTTGTGTAACAC+AGG - chr2_2:60186195-60186214 Msa0261650:intron 40.0%
GGTCAAAAGCAACTTTAGCA+GGG + chr2_2:60186252-60186271 None:intergenic 40.0%
TGGTCAAAAGCAACTTTAGC+AGG + chr2_2:60186253-60186272 None:intergenic 40.0%
!! TTGCTTTTGACCAAACTGTG+TGG - chr2_2:60186260-60186279 Msa0261650:intron 40.0%
AAATAGCTGACCACACAGTT+TGG + chr2_2:60186273-60186292 None:intergenic 40.0%
AAACTGTGTGGTCAGCTATT+TGG - chr2_2:60186272-60186291 Msa0261650:intron 40.0%
TTGGAACACCATCTACTTTG+TGG - chr2_2:60186291-60186310 Msa0261650:intron 40.0%
! CACCATCTACTTTGTGGTTT+TGG - chr2_2:60186297-60186316 Msa0261650:intron 40.0%
ACCCAAAACCACAAAGTAGA+TGG + chr2_2:60186302-60186321 None:intergenic 40.0%
TTTGTTGCGTTTCGACTCTT+TGG - chr2_2:60186321-60186340 Msa0261650:intron 40.0%
TAAGTAATCAGATGGGCGAA+AGG + chr2_2:60186895-60186914 None:intergenic 40.0%
TTCGCCCATCTGATTACTTA+TGG - chr2_2:60186895-60186914 Msa0261650:intron 40.0%
CCACACCATAAGTAATCAGA+TGG + chr2_2:60186903-60186922 None:intergenic 40.0%
CCATCTGATTACTTATGGTG+TGG - chr2_2:60186900-60186919 Msa0261650:intron 40.0%
TGTGGAACAAAGGCTTCTTT+GGG - chr2_2:60186927-60186946 Msa0261650:intron 40.0%
GAGTTCAATAAGACCGCAAT+CGG - chr2_2:60187294-60187313 Msa0261650:intron 40.0%
GAGTAAGTATATACTCCCTC+TGG - chr2_2:60187349-60187368 Msa0261650:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr2_2:60187483-60187502 Msa0261650:exon 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr2_2:60187484-60187503 Msa0261650:exon 40.0%
! ACAAAGCATCAAGGGTTTGA+GGG + chr2_2:60187591-60187610 None:intergenic 40.0%
! ATGGAGTTTCGAGTGTTTGA+TGG - chr2_2:60188097-60188116 Msa0261650:intron 40.0%
ATGGCAAAGAAGATGCATAC+TGG - chr2_2:60188116-60188135 Msa0261650:intron 40.0%
AAAGAGAGATACACCAGATG+AGG - chr2_2:60188168-60188187 Msa0261650:CDS 40.0%
TATGCCAACTAACCTGTTGA+TGG + chr2_2:60188264-60188283 None:intergenic 40.0%
!! GGCGTTTTAAACCGGAATAT+CGG - chr2_2:60188305-60188324 Msa0261650:intron 40.0%
!! GCGTTTTAAACCGGAATATC+GGG - chr2_2:60188306-60188325 Msa0261650:intron 40.0%
TCCTCTTCTTCATCAGACAT+AGG + chr2_2:60188340-60188359 None:intergenic 40.0%
AGAGGAACCTGAAACTGAAT+TGG - chr2_2:60188354-60188373 Msa0261650:CDS 40.0%
AACCTGAAACTGAATTGGAG+TGG - chr2_2:60188359-60188378 Msa0261650:CDS 40.0%
AACCACTCCAATTCAGTTTC+AGG + chr2_2:60188364-60188383 None:intergenic 40.0%
GATAGGAGAAGAGAAAGGTT+TGG - chr2_2:60188450-60188469 Msa0261650:intron 40.0%
CCACAATCATGACATGCATA+TGG + chr2_2:60188519-60188538 None:intergenic 40.0%
CCATATGCATGTCATGATTG+TGG - chr2_2:60188516-60188535 Msa0261650:intron 40.0%
GCATGTCATGATTGTGGAAA+TGG - chr2_2:60188522-60188541 Msa0261650:intron 40.0%
CATGATTGTGGAAATGGAAC+AGG - chr2_2:60188528-60188547 Msa0261650:CDS 40.0%
AGAGATAAGGGGAACTACTA+TGG - chr2_2:60188606-60188625 Msa0261650:CDS 40.0%
GAGATAAGGGGAACTACTAT+GGG - chr2_2:60188607-60188626 Msa0261650:CDS 40.0%
ATACAGGATGATTGATGTCG+TGG + chr2_2:60188635-60188654 None:intergenic 40.0%
TTAGGATATCCTTCACCTTG+AGG - chr2_2:60188766-60188785 Msa0261650:intron 40.0%
AAAGATTCACCTTGTCCTCA+AGG + chr2_2:60188784-60188803 None:intergenic 40.0%
TGAGGACAAGGTGAATCTTT+AGG - chr2_2:60188784-60188803 Msa0261650:intron 40.0%
! GACAAGGTGAATCTTTAGGA+GGG - chr2_2:60188788-60188807 Msa0261650:intron 40.0%
! ACAAGGTGAATCTTTAGGAG+GGG - chr2_2:60188789-60188808 Msa0261650:intron 40.0%
ATCAGAATCCCGAAAATCTG+AGG - chr2_2:60189162-60189181 Msa0261650:intron 40.0%
! TGACACTTCCTCAGATTTTC+GGG + chr2_2:60189173-60189192 None:intergenic 40.0%
! CTGACACTTCCTCAGATTTT+CGG + chr2_2:60189174-60189193 None:intergenic 40.0%
!! CTCTCTGGAACCTTAAAACA+TGG + chr2_2:60189267-60189286 None:intergenic 40.0%
TCTATATGTTGTGTACTGCC+AGG - chr2_2:60189460-60189479 Msa0261650:CDS 40.0%
!! GGCGGATTGTATATAATAGG+CGG + chr2_2:60189924-60189943 None:intergenic 40.0%
TTGGGAAGAGAAAGGAGGTA+GGG + chr2_2:60184856-60184875 None:intergenic 45.0%
TTTGGGAAGAGAAAGGAGGT+AGG + chr2_2:60184857-60184876 None:intergenic 45.0%
!! TTGGTTTGGGAAGAGAAAGG+AGG + chr2_2:60184861-60184880 None:intergenic 45.0%
CATAATCAGCTCCGTTACAG+AGG - chr2_2:60184896-60184915 Msa0261650:three_prime_UTR 45.0%
TGCTTCACGATCCTCTGTAA+CGG + chr2_2:60184910-60184929 None:intergenic 45.0%
GTTTCTTCTTCGCCTTCCAA+GGG - chr2_2:60184969-60184988 Msa0261650:intron 45.0%
GCTGCAATCGTTCTTGGATT+TGG - chr2_2:60185044-60185063 Msa0261650:intron 45.0%
TTATAGTAAAGCAGACGGGG+AGG - chr2_2:60185684-60185703 Msa0261650:intron 45.0%
CTTGTTGGGTTTACTCTCCA+TGG - chr2_2:60186072-60186091 Msa0261650:intron 45.0%
ACAACCCACCATTGTTGGAA+AGG + chr2_2:60186229-60186248 None:intergenic 45.0%
TAGGCACTTGCGAAACTCTT+TGG - chr2_2:60186447-60186466 Msa0261650:intron 45.0%
ATGAAAGAAAGGGGTCAGAG+AGG - chr2_2:60186714-60186733 Msa0261650:intron 45.0%
CTCTAATATGCTTCACAGGC+AGG - chr2_2:60186856-60186875 Msa0261650:intron 45.0%
TACTTATGGTGTGGTTCCTG+TGG - chr2_2:60186909-60186928 Msa0261650:intron 45.0%
CAAAGAAGCCTTTGTTCCAC+AGG + chr2_2:60186928-60186947 None:intergenic 45.0%
CTGTGGAACAAAGGCTTCTT+TGG - chr2_2:60186926-60186945 Msa0261650:intron 45.0%
TGGACTGTATTGAGCTCATC+TGG - chr2_2:60186950-60186969 Msa0261650:intron 45.0%
GGACTGTATTGAGCTCATCT+GGG - chr2_2:60186951-60186970 Msa0261650:intron 45.0%
TCCGCTCAATGTTTCAGTGT+GGG + chr2_2:60187074-60187093 None:intergenic 45.0%
TTCCGCTCAATGTTTCAGTG+TGG + chr2_2:60187075-60187094 None:intergenic 45.0%
AAACATTGAGCGGAATGCGT+TGG - chr2_2:60187080-60187099 Msa0261650:intron 45.0%
AATGCGTTGGACCCAAACTA+GGG - chr2_2:60187093-60187112 Msa0261650:intron 45.0%
!!! TCGTTGGTTCAATGCCCTTT+TGG - chr2_2:60187169-60187188 Msa0261650:intron 45.0%
TGCTTATTGTGTACTCCCTC+CGG + chr2_2:60187502-60187521 None:intergenic 45.0%
! AAAGCATCAAGGGTTTGAGG+GGG + chr2_2:60187589-60187608 None:intergenic 45.0%
! CAAAGCATCAAGGGTTTGAG+GGG + chr2_2:60187590-60187609 None:intergenic 45.0%
! CACAAAGCATCAAGGGTTTG+AGG + chr2_2:60187592-60187611 None:intergenic 45.0%
GGGAGAGAAGAGAAGATTGA+GGG - chr2_2:60187891-60187910 Msa0261650:intron 45.0%
GGAGAGAAGAGAAGATTGAG+GGG - chr2_2:60187892-60187911 Msa0261650:intron 45.0%
ATCTGAGGATTTGACTGGGA+AGG - chr2_2:60187916-60187935 Msa0261650:intron 45.0%
TCTGAGGATTTGACTGGGAA+GGG - chr2_2:60187917-60187936 Msa0261650:intron 45.0%
!! AAGGGGCCATTTTGGCATTA+GGG - chr2_2:60187935-60187954 Msa0261650:intron 45.0%
!! TGGTATCAGAGCATCGATCT+TGG - chr2_2:60188050-60188069 Msa0261650:intron 45.0%
TTTCTGCCATAACGGTACCA+CGG + chr2_2:60188078-60188097 None:intergenic 45.0%
TGGTACCGTTATGGCAGAAA+TGG - chr2_2:60188078-60188097 Msa0261650:intron 45.0%
GCAAAGAAGATGCATACTGG+TGG - chr2_2:60188119-60188138 Msa0261650:intron 45.0%
TCTGTCAGTTTCTCCTCATC+TGG + chr2_2:60188184-60188203 None:intergenic 45.0%
! GATGCGTTGATGTTACTCAG+AGG - chr2_2:60188202-60188221 Msa0261650:CDS 45.0%
GGCATGATATCCCGATATTC+CGG + chr2_2:60188319-60188338 None:intergenic 45.0%
GCCTATGTCTGATGAAGAAG+AGG - chr2_2:60188336-60188355 Msa0261650:CDS 45.0%
TCAACCACAAGATAGTGACC+AGG - chr2_2:60188408-60188427 Msa0261650:CDS 45.0%
CAACCACAAGATAGTGACCA+GGG - chr2_2:60188409-60188428 Msa0261650:CDS 45.0%
TTTCCCTGGTCACTATCTTG+TGG + chr2_2:60188415-60188434 None:intergenic 45.0%
ACCTTTCTCTTCTCCTATCG+CGG + chr2_2:60188449-60188468 None:intergenic 45.0%
TGAGTATGGGGTCAGAGATA+AGG - chr2_2:60188593-60188612 Msa0261650:CDS 45.0%
GAGTATGGGGTCAGAGATAA+GGG - chr2_2:60188594-60188613 Msa0261650:CDS 45.0%
AGTATGGGGTCAGAGATAAG+GGG - chr2_2:60188595-60188614 Msa0261650:CDS 45.0%
! TACTTCAAGTTATGGGACCC+AGG - chr2_2:60188736-60188755 Msa0261650:intron 45.0%
GATATCCTAAGTGTCCACCT+GGG + chr2_2:60188756-60188775 None:intergenic 45.0%
TATCCTTCACCTTGAGGACA+AGG - chr2_2:60188772-60188791 Msa0261650:intron 45.0%
GGACAAGGTGAATCTTTAGG+AGG - chr2_2:60188787-60188806 Msa0261650:intron 45.0%
GGGAGAGAAGAGAAGATTGA+GGG - chr2_2:60187891-60187910 Msa0261650:intron 45.0%
GGAGAGAAGAGAAGATTGAG+GGG - chr2_2:60187892-60187911 Msa0261650:intron 45.0%
ATCTGAGGATTTGACTGGGA+AGG - chr2_2:60187916-60187935 Msa0261650:intron 45.0%
TCTGAGGATTTGACTGGGAA+GGG - chr2_2:60187917-60187936 Msa0261650:intron 45.0%
!! AAGGGGCCATTTTGGCATTA+GGG - chr2_2:60187935-60187954 Msa0261650:intron 45.0%
!! GAGGAAGTGTCAGAAACAAC+AGG - chr2_2:60189181-60189200 Msa0261650:intron 45.0%
! TTTAAGGTTCCAGAGAGTCC+TGG - chr2_2:60189270-60189289 Msa0261650:intron 45.0%
TAAGTTTCACCAGGACTCTC+TGG + chr2_2:60189282-60189301 None:intergenic 45.0%
!! ACTTGTTGTGCATCCTTTGG+CGG - chr2_2:60189701-60189720 Msa0261650:five_prime_UTR 45.0%
GAATAATTCGTCACCGCCAA+AGG + chr2_2:60189717-60189736 None:intergenic 45.0%
TTGGCGGTGACGAATTATTC+AGG - chr2_2:60189717-60189736 Msa0261650:five_prime_UTR 45.0%
TCACTCTCAACTGGAAGAGG+GGG + chr2_2:60184552-60184571 None:intergenic 50.0%
GTCACTCTCAACTGGAAGAG+GGG + chr2_2:60184553-60184572 None:intergenic 50.0%
GGTCACTCTCAACTGGAAGA+GGG + chr2_2:60184554-60184573 None:intergenic 50.0%
!! GAGATGTGGGGCTTTGAGAA+GGG + chr2_2:60184834-60184853 None:intergenic 50.0%
AAAGGAGGTAGGGAGATGTG+GGG + chr2_2:60184846-60184865 None:intergenic 50.0%
GAAAGGAGGTAGGGAGATGT+GGG + chr2_2:60184847-60184866 None:intergenic 50.0%
AGAAAGGAGGTAGGGAGATG+TGG + chr2_2:60184848-60184867 None:intergenic 50.0%
AGAGGATCGTGAAGCAGCTT+CGG - chr2_2:60184914-60184933 Msa0261650:three_prime_UTR 50.0%
AGACAGAAAAGTCCTCGAGG+AGG - chr2_2:60184947-60184966 Msa0261650:three_prime_UTR 50.0%
GGTTTCTTCTTCGCCTTCCA+AGG - chr2_2:60184968-60184987 Msa0261650:intron 50.0%
ACCTCTGTGATACCCTTGGA+AGG + chr2_2:60184984-60185003 None:intergenic 50.0%
AGCAACCTCTGTGATACCCT+TGG + chr2_2:60184988-60185007 None:intergenic 50.0%
AATATGCTTCACAGGCAGGC+TGG - chr2_2:60186860-60186879 Msa0261650:intron 50.0%
GTGTGGTTCCTGTGGAACAA+AGG - chr2_2:60186917-60186936 Msa0261650:intron 50.0%
GGAACAAAGGCTTCTTTGGG+TGG - chr2_2:60186930-60186949 Msa0261650:intron 50.0%
GCCCACACTGAAACATTGAG+CGG - chr2_2:60187070-60187089 Msa0261650:intron 50.0%
GAATGCGTTGGACCCAAACT+AGG - chr2_2:60187092-60187111 Msa0261650:intron 50.0%
GGGGAGAGAAGAGAAGATTG+AGG - chr2_2:60187890-60187909 Msa0261650:intron 50.0%
!! AGAAGATTGAGGGGCATCTG+AGG - chr2_2:60187901-60187920 Msa0261650:intron 50.0%
GGGCATCTGAGGATTTGACT+GGG - chr2_2:60187912-60187931 Msa0261650:intron 50.0%
CTGAGGATTTGACTGGGAAG+GGG - chr2_2:60187918-60187937 Msa0261650:intron 50.0%
!! GAAGGGGCCATTTTGGCATT+AGG - chr2_2:60187934-60187953 Msa0261650:intron 50.0%
GCACCTCCCTAATGCCAAAA+TGG + chr2_2:60187944-60187963 None:intergenic 50.0%
TTGGAACCGTGGTACCGTTA+TGG - chr2_2:60188069-60188088 Msa0261650:intron 50.0%
GATTCCACCAGTGTGACCAT+TGG + chr2_2:60188237-60188256 None:intergenic 50.0%
GACGCCATCAACAGGTTAGT+TGG - chr2_2:60188257-60188276 Msa0261650:intron 50.0%
TTGGAGTGGTTGACGACTCA+AGG - chr2_2:60188373-60188392 Msa0261650:CDS 50.0%
AATCCAAATCCCACCGCGAT+AGG - chr2_2:60188433-60188452 Msa0261650:intron 50.0%
TTCTCTTCTCCTATCGCGGT+GGG + chr2_2:60188445-60188464 None:intergenic 50.0%
TTTCTCTTCTCCTATCGCGG+TGG + chr2_2:60188446-60188465 None:intergenic 50.0%
ACCGCGATAGGAGAAGAGAA+AGG - chr2_2:60188445-60188464 Msa0261650:intron 50.0%
! TTCAAGTTATGGGACCCAGG+TGG - chr2_2:60188739-60188758 Msa0261650:intron 50.0%
GGATATCCTAAGTGTCCACC+TGG + chr2_2:60188757-60188776 None:intergenic 50.0%
TCACCTTGTCCTCAAGGTGA+AGG + chr2_2:60188778-60188797 None:intergenic 50.0%
GGGGAGAGAAGAGAAGATTG+AGG - chr2_2:60187890-60187909 Msa0261650:intron 50.0%
!! AGAAGATTGAGGGGCATCTG+AGG - chr2_2:60187901-60187920 Msa0261650:intron 50.0%
GGGCATCTGAGGATTTGACT+GGG - chr2_2:60187912-60187931 Msa0261650:intron 50.0%
CTGAGGATTTGACTGGGAAG+GGG - chr2_2:60187918-60187937 Msa0261650:intron 50.0%
!! GAAGGGGCCATTTTGGCATT+AGG - chr2_2:60187934-60187953 Msa0261650:intron 50.0%
GCACCTCCCTAATGCCAAAA+TGG + chr2_2:60187944-60187963 None:intergenic 50.0%
CACTCTCAACTGGAAGAGGG+GGG + chr2_2:60184551-60184570 None:intergenic 55.0%
CGGTCACTCTCAACTGGAAG+AGG + chr2_2:60184555-60184574 None:intergenic 55.0%
GGAACTCGGTCACTCTCAAC+TGG + chr2_2:60184561-60184580 None:intergenic 55.0%
!! GGGCTTTGAGAAGGGAAGGA+GGG + chr2_2:60184826-60184845 None:intergenic 55.0%
!! TGTGGGGCTTTGAGAAGGGA+AGG + chr2_2:60184830-60184849 None:intergenic 55.0%
!! GGAGATGTGGGGCTTTGAGA+AGG + chr2_2:60184835-60184854 None:intergenic 55.0%
GCGAAGAAGAAACCTCCTCG+AGG + chr2_2:60184962-60184981 None:intergenic 55.0%
!! GCCTTCCAAGGGTATCACAG+AGG - chr2_2:60184980-60184999 Msa0261650:intron 55.0%
!! TGCAGCATTGATGGCACGTC+CGG + chr2_2:60185030-60185049 None:intergenic 55.0%
AGTAAAGCAGACGGGGAGGA+TGG - chr2_2:60185688-60185707 Msa0261650:intron 55.0%
CGAGCGCGGCTATTTAGATC+AGG - chr2_2:60186048-60186067 Msa0261650:intron 55.0%
CAGGGACAACCCACCATTGT+TGG + chr2_2:60186234-60186253 None:intergenic 55.0%
! GGGGCATCTGAGGATTTGAC+TGG - chr2_2:60187911-60187930 Msa0261650:intron 55.0%
! TGACTGGGAAGGGGCCATTT+TGG - chr2_2:60187927-60187946 Msa0261650:intron 55.0%
!! GGGCCATTTTGGCATTAGGG+AGG - chr2_2:60187938-60187957 Msa0261650:intron 55.0%
!! GAGCATCGATCTTGGAACCG+TGG - chr2_2:60188058-60188077 Msa0261650:intron 55.0%
CTGGTGGCTGCTATGCATTG+AGG - chr2_2:60188135-60188154 Msa0261650:CDS 55.0%
GTGGAATCGACGCCATCAAC+AGG - chr2_2:60188249-60188268 Msa0261650:intron 55.0%
CGGTGGGATTTGGATTTCCC+TGG + chr2_2:60188429-60188448 None:intergenic 55.0%
TCTCCTATCGCGGTGGGATT+TGG + chr2_2:60188439-60188458 None:intergenic 55.0%
! GGGGCATCTGAGGATTTGAC+TGG - chr2_2:60187911-60187930 Msa0261650:intron 55.0%
! TGACTGGGAAGGGGCCATTT+TGG - chr2_2:60187927-60187946 Msa0261650:intron 55.0%
!! GGGCCATTTTGGCATTAGGG+AGG - chr2_2:60187938-60187957 Msa0261650:intron 55.0%
!! GGGGCTTTGAGAAGGGAAGG+AGG + chr2_2:60184827-60184846 None:intergenic 60.0%
CACAGGCAGGCTGGAAGCTT+TGG - chr2_2:60186869-60186888 Msa0261650:intron 60.0%
TCAGAGGTCGTGCTCGCCAA+TGG - chr2_2:60188218-60188237 Msa0261650:intron 60.0%
GTGCTCGCCAATGGTCACAC+TGG - chr2_2:60188227-60188246 Msa0261650:intron 60.0%
CTCGCCAATGGTCACACTGG+TGG - chr2_2:60188230-60188249 Msa0261650:intron 60.0%
TGGGACCCAGGTGGACACTT+AGG - chr2_2:60188748-60188767 Msa0261650:intron 60.0%
!! GGGGGGTGCTGTGCTGGAAA+TGG + chr2_2:60184534-60184553 None:intergenic 65.0%
!! GGAAGAGGGGGGTGCTGTGC+TGG + chr2_2:60184540-60184559 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 60184460 60189988 60184460 ID=Msa0261650;Name=Msa0261650
chr2_2 mRNA 60184460 60189988 60184460 ID=Msa0261650-mRNA-1;Parent=Msa0261650;Name=Msa0261650-mRNA-1;_AED=0.10;_eAED=0.10;_QI=332|0.83|0.85|1|0.66|0.71|7|619|256
chr2_2 exon 60184460 60184966 60184460 ID=Msa0261650-mRNA-1:exon:18519;Parent=Msa0261650-mRNA-1
chr2_2 exon 60185217 60185301 60185217 ID=Msa0261650-mRNA-1:exon:18518;Parent=Msa0261650-mRNA-1
chr2_2 exon 60187459 60187574 60187459 ID=Msa0261650-mRNA-1:exon:18517;Parent=Msa0261650-mRNA-1
chr2_2 exon 60188129 60188231 60188129 ID=Msa0261650-mRNA-1:exon:18516;Parent=Msa0261650-mRNA-1
chr2_2 exon 60188320 60188433 60188320 ID=Msa0261650-mRNA-1:exon:18515;Parent=Msa0261650-mRNA-1
chr2_2 exon 60188523 60188663 60188523 ID=Msa0261650-mRNA-1:exon:18514;Parent=Msa0261650-mRNA-1
chr2_2 exon 60189333 60189988 60189333 ID=Msa0261650-mRNA-1:exon:18513;Parent=Msa0261650-mRNA-1
chr2_2 five_prime_UTR 60189657 60189988 60189657 ID=Msa0261650-mRNA-1:five_prime_utr;Parent=Msa0261650-mRNA-1
chr2_2 CDS 60189333 60189656 60189333 ID=Msa0261650-mRNA-1:cds;Parent=Msa0261650-mRNA-1
chr2_2 CDS 60188523 60188663 60188523 ID=Msa0261650-mRNA-1:cds;Parent=Msa0261650-mRNA-1
chr2_2 CDS 60188320 60188433 60188320 ID=Msa0261650-mRNA-1:cds;Parent=Msa0261650-mRNA-1
chr2_2 CDS 60188129 60188231 60188129 ID=Msa0261650-mRNA-1:cds;Parent=Msa0261650-mRNA-1
chr2_2 CDS 60187486 60187574 60187486 ID=Msa0261650-mRNA-1:cds;Parent=Msa0261650-mRNA-1
chr2_2 three_prime_UTR 60187459 60187485 60187459 ID=Msa0261650-mRNA-1:three_prime_utr;Parent=Msa0261650-mRNA-1
chr2_2 three_prime_UTR 60185217 60185301 60185217 ID=Msa0261650-mRNA-1:three_prime_utr;Parent=Msa0261650-mRNA-1
chr2_2 three_prime_UTR 60184460 60184966 60184460 ID=Msa0261650-mRNA-1:three_prime_utr;Parent=Msa0261650-mRNA-1
Gene Sequence

>Msa0261650

ATGGCCATGTCAGTTGCTTCTTCTATTTGCACCCTCCTTCCCTTCTCAAAGCCCCACATCTCCCTACCTCCTTTCTCTTCCCAAACCAAAAAACGACGTCGTATCATAATCAGCTCCGTTACAGAGGATCGTGAAGCAGCTTCGGTTGTATCAAAAGACAGAAAAGTCCTCGAGGAGGTTTCTTCTTCGCCTTCCAAGGGTATCACAGAGGTTGCTACTGACACTGATATTCTCACCGGACGTGCCATCAATGCTGCAATCGTTCTTGGATTTGGAGCTTTTGCTGTCACCAAATTGCTCACAATTGATCATGATTACTGGCATGGTTGGACACTTTATGAGATACTGAAATATGTGCCTGAACACAATTGGATTGCCTATGAGCAATCTCTGAAAGCAAATCCAGTTTTAGCTAAAATGGCAATAAGTGGAGTTGTCTACTCAATTGGAGATTGGATTGCTCAGTGCTATGAAGGAAAGCCTATTTTTGAGTTTGATCGAGCGCGGCTATTTAGATCAGGTCTTGTTGGGTTTACTCTCCATGGATCTCTTTCTCACTATTACTACCAACTGTGTGAGGCTCTTTTTCCTTTCCAACAATGGTGGGTTGTCCCTGCTAAAGTTGCTTTTGACCAAACTGTGTGGTCAGCTATTTGGAACACCATCTACTTTGTGGTTTTGGGCAGGCTGGAAGCTTTGGCCTTTCGCCCATCTGATTACTTATGGTGTGGTTCCTGTGGAACAAAGGCTTCTTTGGGTGGACTGTATTGA
Protein sequence

>Msa0261650

MAMSVASSICTLLPFSKPHISLPPFSSQTKKRRRIIISSVTEDREAASVVSKDRKVLEEVSSSPSKGITEVATDTDILTGRAINAAIVLGFGAFAVTKLLTIDHDYWHGWTLYEILKYVPEHNWIAYEQSLKANPVLAKMAISGVVYSIGDWIAQCYEGKPIFEFDRARLFRSGLVGFTLHGSLSHYYYQLCEALFPFQQWWVVPAKVAFDQTVWSAIWNTIYFVVLGRLEALAFRPSDYLWCGSCGTKASLGGLY*