AlfalfaGEDB | Msa1144610

M. sativa cultivar zhongmu-4 / Msa1144610

KEGG: K02989
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144610	XP_013450311.1	92.754	207	3	2	1	196	1	206	8.17e-135	385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144610	sp\|O65731\|RS5_CICAR	87.692	195	13	1	13	196	3	197	1.71e-121	344

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144610	I3SKT5	92.754	207	3	2	1	196	1	206	3.90e-135	385

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0086160	Msa1144610	0.809869	1.529058e-50	-8.615850e-47
Msa0093940	Msa1144610	-0.806205	9.211152e-50	-8.615850e-47
Msa0094210	Msa1144610	0.886580	3.023433e-72	-8.615850e-47
Msa0114600	Msa1144610	0.831972	1.232629e-55	-8.615850e-47
Msa0132460	Msa1144610	0.819521	1.111816e-52	-8.615850e-47
Msa0134580	Msa1144610	0.802015	6.856476e-49	-8.615850e-47
Msa0169710	Msa1144610	0.807624	4.614874e-50	-8.615850e-47
Msa0182050	Msa1144610	0.816255	6.075692e-52	-8.615850e-47
Msa0182100	Msa1144610	0.821665	3.578896e-53	-8.615850e-47
Msa0183840	Msa1144610	0.802707	4.936637e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144610	MtrunA17_Chr7g0268431	92.754	207	3	2	1	196	1	206	7.51e-139	385
Msa1144610	MtrunA17_Chr1g0176261	89.474	209	7	4	1	196	33	239	4.17e-129	362

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144610	AT2G37270.1	83.085	201	22	2	8	196	7	207	2.95e-120	339
Msa1144610	AT2G37270.2	83.085	201	22	2	8	196	7	207	2.95e-120	339
Msa1144610	AT3G11940.1	83.770	191	20	1	17	196	17	207	1.82e-118	335
Msa1144610	AT3G11940.2	83.770	191	20	1	17	196	17	207	1.82e-118	335

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Find 70 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACGGAAAGAAACTCA+TGG	0.646751	7_4:+20908213	Msa1144610:CDS
AACACGTCAGCTTGGAAAAC+TGG	0.359904	7_4:-20911329	None:intergenic
AACTCCAGCAGATCCAATTC+TGG	0.495047	7_4:-20910732	None:intergenic
AACTTCGACTGGGATAGCGA+CGG	0.675722	7_4:-20907543	None:intergenic
AAGCTACCTTGTAGATAGTG+CGG	0.671061	7_4:-20907422	None:intergenic
AAGGCAAAGCAAGAGTGACA+GGG	0.684074	7_4:-20907364	None:intergenic
AAGTCAAGCTCTTCAACCAA+TGG	0.580728	7_4:+20907582	Msa1144610:CDS
AATACTTCAACACGTCAGCT+TGG	0.541551	7_4:-20911337	None:intergenic
AATGATCCTTGAAACAGTCA+TGG	0.599615	7_4:-20911236	None:intergenic
ACAAGTCAATTCAACGTGAG+AGG	0.604212	7_4:-20911190	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCGTGAATAATTCAATGATT+AGG	-	chr7_4:20907506-20907525	None:intergenic	30.0%
CATTAAGGACCTATTTAGAT+TGG	-	chr7_4:20907952-20907971	None:intergenic	30.0%
CAATCTAAATAGGTCCTTAA+TGG	+	chr7_4:20907950-20907969	Msa1144610:intron	30.0%
GCATCAACTATAACTTGAAT+TGG	-	chr7_4:20908295-20908314	None:intergenic	30.0%
GGGAAAATAACAAAATGCAA+AGG	-	chr7_4:20908341-20908360	None:intergenic	30.0%
CTGCTTAATATGTCTTGATT+TGG	+	chr7_4:20908484-20908503	Msa1144610:intron	30.0%
ATTCAGGTATTCAAACCAAT+AGG	-	chr7_4:20908536-20908555	None:intergenic	30.0%
TACAAAAAATGCCATCATTC+AGG	-	chr7_4:20908552-20908571	None:intergenic	30.0%
TTGATTTACTGTTTCCCTAT+TGG	+	chr7_4:20908787-20908806	Msa1144610:intron	30.0%
ACATGCATTATTACTGTTGA+GGG	-	chr7_4:20908891-20908910	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	20907349	20911402	20907349	ID=Msa1144610;Name=Msa1144610
chr7_4	mRNA	20907349	20911402	20907349	ID=Msa1144610-mRNA-1;Parent=Msa1144610;Name=Msa1144610-mRNA-1;_AED=0.16;_eAED=0.16;_QI=91\|0.8\|0.66\|1\|0.8\|0.66\|6\|329\|196
chr7_4	exon	20907349	20907437	20907349	ID=Msa1144610-mRNA-1:exon:5004;Parent=Msa1144610-mRNA-1
chr7_4	exon	20907528	20907622	20907528	ID=Msa1144610-mRNA-1:exon:5005;Parent=Msa1144610-mRNA-1
chr7_4	exon	20908055	20908326	20908055	ID=Msa1144610-mRNA-1:exon:5006;Parent=Msa1144610-mRNA-1
chr7_4	exon	20910712	20910769	20910712	ID=Msa1144610-mRNA-1:exon:5007;Parent=Msa1144610-mRNA-1
chr7_4	exon	20910802	20910914	20910802	ID=Msa1144610-mRNA-1:exon:5008;Parent=Msa1144610-mRNA-1
chr7_4	exon	20911019	20911402	20911019	ID=Msa1144610-mRNA-1:exon:5009;Parent=Msa1144610-mRNA-1
chr7_4	five_prime_UTR	20907349	20907437	20907349	ID=Msa1144610-mRNA-1:five_prime_utr;Parent=Msa1144610-mRNA-1
chr7_4	five_prime_UTR	20907528	20907529	20907528	ID=Msa1144610-mRNA-1:five_prime_utr;Parent=Msa1144610-mRNA-1
chr7_4	CDS	20907530	20907622	20907530	ID=Msa1144610-mRNA-1:cds;Parent=Msa1144610-mRNA-1
chr7_4	CDS	20908055	20908326	20908055	ID=Msa1144610-mRNA-1:cds;Parent=Msa1144610-mRNA-1
chr7_4	CDS	20910712	20910769	20910712	ID=Msa1144610-mRNA-1:cds;Parent=Msa1144610-mRNA-1
chr7_4	CDS	20910802	20910914	20910802	ID=Msa1144610-mRNA-1:cds;Parent=Msa1144610-mRNA-1
chr7_4	CDS	20911019	20911073	20911019	ID=Msa1144610-mRNA-1:cds;Parent=Msa1144610-mRNA-1
chr7_4	three_prime_UTR	20911074	20911402	20911074	ID=Msa1144610-mRNA-1:three_prime_utr;Parent=Msa1144610-mRNA-1

Gene Sequence

>Msa1144610

ATGGCTGATGAAACCGTCGCTATCCCAGTCGAAGTTGATCCCAATCTAAACGAAGTCAAGCTCTTCAACCAATGGAGCTTTGACGACGTTCAGATTACCGATCTGTCTCTTGGGGATTACATTGGAGCAAGAGGATCCAAACATGCAACATATGTTCCTCACACTGCTGGTAGGTACTCAAAGAAGCGCTTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCACGGCAGAAACAACGGAAAGAAACTCATGGCTGTTAGGATCATTAAGCATGCCATGGAGATCATTCACTTGCTAACTGATCAGAATCCAATTCAAGTTATAGTTGATGCTGTCGTCAACAGTGGTCCTAGAGAAGATGCAACCAGAATTGGATCTGCTGGAGTTGTTAGGAGGCAGGCTGCCATATATCTTCTAACAACTGGTGCCCGTGAAGCTGCATTTAGGAACATTAAGACAATTGCTGAATGCTTGGCTGATGAACTCATTAACGCTGCCAAGGGTTCATCCAACAGCTATGCGATCAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAA

Protein sequence

>Msa1144610

MADETVAIPVEVDPNLNEVKLFNQWSFDDVQITDLSLGDYIGARGSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*