Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299540 | XP_013465057.1 | 88.715 | 319 | 10 | 2 | 1 | 294 | 1 | 318 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299540 | sp|Q754F0|SYM1_ASHGO | 26.136 | 176 | 100 | 3 | 127 | 273 | 8 | 182 | 2.64e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299540 | A0A072VBB5 | 88.715 | 319 | 10 | 2 | 1 | 294 | 1 | 318 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093940 | Msa0299540 | 0.944670 | 1.273059e-103 | -8.615850e-47 |
| Msa0114600 | Msa0299540 | -0.813914 | 2.010915e-51 | -8.615850e-47 |
| Msa0220410 | Msa0299540 | 0.959280 | 2.868096e-117 | -8.615850e-47 |
| Msa0261650 | Msa0299540 | 0.877128 | 8.052943e-69 | -8.615850e-47 |
| Msa0299540 | Msa0378620 | 0.815434 | 9.262841e-52 | -8.615850e-47 |
| Msa0299540 | Msa0388520 | -0.809513 | 1.822912e-50 | -8.615850e-47 |
| Msa0299540 | Msa0476730 | 0.809415 | 1.913608e-50 | -8.615850e-47 |
| Msa0299540 | Msa0521730 | -0.803782 | 2.958267e-49 | -8.615850e-47 |
| Msa0299540 | Msa0619320 | 0.818007 | 2.453444e-52 | -8.615850e-47 |
| Msa0299540 | Msa0704780 | 0.809395 | 1.932757e-50 | -8.615850e-47 |
| Msa0299540 | Msa0850520 | 0.807467 | 4.983955e-50 | -8.615850e-47 |
| Msa0299540 | Msa1085570 | 0.806007 | 1.013750e-49 | -8.615850e-47 |
| Msa0299540 | Msa1085850 | -0.800166 | 1.637363e-48 | -8.615850e-47 |
| Msa0299540 | Msa1269250 | 0.807146 | 5.829669e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299540 | MtrunA17_Chr2g0324001 | 88.715 | 319 | 10 | 2 | 1 | 294 | 1 | 318 | 0.0 | 563 |
| Msa0299540 | MtrunA17_Chr2g0318131 | 64.453 | 256 | 66 | 1 | 57 | 287 | 110 | 365 | 1.14e-119 | 347 |
| Msa0299540 | MtrunA17_Chr2g0324031 | 87.879 | 33 | 4 | 0 | 194 | 226 | 26 | 58 | 4.03e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299540 | AT4G03410.2 | 62.102 | 314 | 84 | 3 | 5 | 290 | 13 | 319 | 1.06e-139 | 399 |
| Msa0299540 | AT4G03410.1 | 62.581 | 310 | 81 | 3 | 5 | 286 | 13 | 315 | 1.36e-139 | 396 |
| Msa0299540 | AT1G52870.2 | 55.114 | 352 | 84 | 5 | 2 | 281 | 3 | 352 | 8.57e-126 | 363 |
| Msa0299540 | AT1G52870.1 | 53.455 | 275 | 79 | 4 | 2 | 229 | 3 | 275 | 2.69e-94 | 281 |
Find 108 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCATCTACTTTGTGGTTT+TGG | 0.095576 | 2_3:+54500728 | Msa0299540:CDS |
| AATATTAAATTATTCTTCTT+TGG | 0.169387 | 2_3:+54502939 | Msa0299540:three_prime_UTR |
| CTGTGGAACAAAGGCTTCTT+TGG | 0.173165 | 2_3:+54501357 | Msa0299540:CDS |
| GTTTGGTGCGAAATTAATTA+AGG | 0.189591 | 2_3:-54499173 | None:intergenic |
| TCTTAGTTACCTTAGAATTT+TGG | 0.194039 | 2_3:-54502291 | None:intergenic |
| CACAGGCAGGCTGGAAGCTT+TGG | 0.250296 | 2_3:+54501300 | Msa0299540:intron |
| TTCGCCCATCTGATTACTTA+TGG | 0.254055 | 2_3:+54501326 | Msa0299540:CDS |
| ATCAATGCTGCAATCGTTCT+TGG | 0.258440 | 2_3:+54499469 | Msa0299540:CDS |
| GCTGCAATCGTTCTTGGATT+TGG | 0.262559 | 2_3:+54499475 | Msa0299540:CDS |
| ATATTAAATTATTCTTCTTT+GGG | 0.263210 | 2_3:+54502940 | Msa0299540:three_prime_UTR |
| AAACTGTGTGGTCAGCTATT+TGG | 0.279478 | 2_3:+54500703 | Msa0299540:CDS |
| TGGACTGTATTGAGCTCATC+TGG | 0.292811 | 2_3:+54501381 | Msa0299540:CDS |
| TATACAGGATTGTACATAAT+AGG | 0.312831 | 2_3:-54502898 | None:intergenic |
| TGCGGATTGCGGTGCTGTGC+TGG | 0.314198 | 2_3:-54498931 | None:intergenic |
| ATGATCAATTGTGAGCAATT+TGG | 0.323543 | 2_3:-54499512 | None:intergenic |
| TTAAGCCGATTGTATATAAT+AGG | 0.328913 | 2_3:-54502979 | None:intergenic |
| GCATCGTATGTTCTTTATAC+AGG | 0.347558 | 2_3:-54502913 | None:intergenic |
| TCACAATTGATCATGATTAC+TGG | 0.351701 | 2_3:+54499521 | Msa0299540:CDS |
| TTGGCGGTGACGAATTATTC+AGG | 0.353350 | 2_3:+54502772 | Msa0299540:three_prime_UTR |
| TGTGGAACAAAGGCTTCTTT+GGG | 0.369696 | 2_3:+54501358 | Msa0299540:CDS |
| CTTGTTGGGTTTACTCTCCA+TGG | 0.385473 | 2_3:+54500503 | Msa0299540:CDS |
| TATACTTGTTGTGCATCCTT+TGG | 0.387734 | 2_3:+54502753 | Msa0299540:three_prime_UTR |
| TACACCAAGCCAAAATTCTA+AGG | 0.390257 | 2_3:+54502282 | Msa0299540:CDS |
| CTATTTAGATCAGGTCTTGT+TGG | 0.390942 | 2_3:+54500488 | Msa0299540:CDS |
| TTTGGTGCGAAATTAATTAA+GGG | 0.392774 | 2_3:-54499172 | None:intergenic |
| AAGAACGATTGCAGCATTGA+TGG | 0.399238 | 2_3:-54499467 | None:intergenic |
| AGTGGAGTTGTCTACTCAAT+TGG | 0.403111 | 2_3:+54500318 | Msa0299540:CDS |
| TTGGAACACCATCTACTTTG+TGG | 0.406483 | 2_3:+54500722 | Msa0299540:CDS |
| TATTTAGATCAGGTCTTGTT+GGG | 0.406785 | 2_3:+54500489 | Msa0299540:CDS |
| TGCGAAATTAATTAAGGGAT+TGG | 0.407194 | 2_3:-54499167 | None:intergenic |
| TGGTCAAAAGCAACTTTAGC+AGG | 0.412786 | 2_3:-54500681 | None:intergenic |
| GCATATATATTATATATAAC+AGG | 0.415377 | 2_3:+54499046 | Msa0299540:five_prime_UTR |
| GAAAGGAGGTAAGGAGATGT+GGG | 0.419167 | 2_3:-54499275 | None:intergenic |
| GGAACTCTGTCACTCTCAAC+TGG | 0.421878 | 2_3:-54498968 | None:intergenic |
| AAATAGCTGACCACACAGTT+TGG | 0.423298 | 2_3:-54500701 | None:intergenic |
| CAGGGACAACCCACCATTGT+TGG | 0.429883 | 2_3:-54500662 | None:intergenic |
| AGAAAGGAGGTAAGGAGATG+TGG | 0.435548 | 2_3:-54499276 | None:intergenic |
| TTGTCTACTCAATTGGAGAT+TGG | 0.442062 | 2_3:+54500325 | Msa0299540:CDS |
| TAGGCAATCCAATTGTGTTC+AGG | 0.443916 | 2_3:-54500249 | None:intergenic |
| TGCAGCATTGATGGCACGTC+CGG | 0.446757 | 2_3:-54499458 | None:intergenic |
| TTGGGAAGAGAAAGGAGGTA+AGG | 0.452969 | 2_3:-54499284 | None:intergenic |
| GGTTTCTTCTTCGCCTTCCA+AGG | 0.454215 | 2_3:+54499399 | Msa0299540:CDS |
| ACCCAAAACCACAAAGTAGA+TGG | 0.457211 | 2_3:-54500730 | None:intergenic |
| AGAGGATCGTGAAGCAGCTT+CGG | 0.458460 | 2_3:+54499345 | Msa0299540:CDS |
| CAAAATATATAGTGCTATGA+AGG | 0.459856 | 2_3:+54500434 | Msa0299540:intron |
| TTGCGGTGCTGTGCTGGAAA+TGG | 0.468112 | 2_3:-54498925 | None:intergenic |
| GAGATGTGGGGCTTTGAGAA+GGG | 0.469500 | 2_3:-54499262 | None:intergenic |
| TCTTTCTTTAAATTCTCTCA+TGG | 0.476604 | 2_3:+54499204 | Msa0299540:exon |
| GGTTCTAGTTGAGAATTGAT+TGG | 0.477105 | 2_3:-54499112 | None:intergenic |
| AAATTAATTAAGGGATTGGT+GGG | 0.477447 | 2_3:-54499163 | None:intergenic |
| ATCCGCCTATTATATACAAT+CGG | 0.477627 | 2_3:+54502974 | Msa0299540:three_prime_UTR |
| AATATGTGCCTGAACACAAT+TGG | 0.484652 | 2_3:+54500241 | Msa0299540:CDS |
| TTTGATTCTACAGAGAAAGA+AGG | 0.485854 | 2_3:-54499133 | None:intergenic |
| AATTGGAGATTGGATTGCTC+AGG | 0.486533 | 2_3:+54500335 | Msa0299540:CDS |
| TGCTTTCAGAGATTGCTCAT+AGG | 0.490513 | 2_3:-54500268 | None:intergenic |
| GAGGAAGTGTCAGAAACAAC+AGG | 0.491215 | 2_3:+54502253 | Msa0299540:CDS |
| CTCTCAACTGGAAGAGAAGA+GGG | 0.492330 | 2_3:-54498956 | None:intergenic |
| TTAGCTAAAATGGCAATAAG+TGG | 0.494093 | 2_3:+54500300 | Msa0299540:CDS |
| GGAGATGTGGGGCTTTGAGA+AGG | 0.505377 | 2_3:-54499263 | None:intergenic |
| AGGATCTCAATTGAAGTTGA+AGG | 0.512181 | 2_3:+54502679 | Msa0299540:three_prime_UTR |
| GAAATTAATTAAGGGATTGG+TGG | 0.516216 | 2_3:-54499164 | None:intergenic |
| TACTTATGGTGTGGTTCCTG+TGG | 0.517838 | 2_3:+54501340 | Msa0299540:CDS |
| ACTTGTTGTGCATCCTTTGG+CGG | 0.518337 | 2_3:+54502756 | Msa0299540:three_prime_UTR |
| AGCAACCTCTGTGATACCCT+TGG | 0.523659 | 2_3:-54499416 | None:intergenic |
| GTATAAAGAACATACGATGC+TGG | 0.523748 | 2_3:+54502916 | Msa0299540:three_prime_UTR |
| GAATAATTCGTCACCGCCAA+AGG | 0.526939 | 2_3:-54502769 | None:intergenic |
| GGGGCTTTGAGAAGGGAAGG+AGG | 0.527578 | 2_3:-54499255 | None:intergenic |
| TTAAATTATTCTTCTTTGGG+GGG | 0.531443 | 2_3:+54502943 | Msa0299540:three_prime_UTR |
| CGAGCGCGGCTATTTAGATC+AGG | 0.532514 | 2_3:+54500479 | Msa0299540:CDS |
| CAAAGAAGCCTTTGTTCCAC+AGG | 0.539036 | 2_3:-54501356 | None:intergenic |
| TGTGGGGCTTTGAGAAGGGA+AGG | 0.541270 | 2_3:-54499258 | None:intergenic |
| GGAACAAAGGCTTCTTTGGG+TGG | 0.543292 | 2_3:+54501361 | Msa0299540:CDS |
| TATTAAATTATTCTTCTTTG+GGG | 0.545614 | 2_3:+54502941 | Msa0299540:three_prime_UTR |
| CCACACCATAAGTAATCAGA+TGG | 0.560187 | 2_3:-54501331 | None:intergenic |
| GTTTCTTCTTCGCCTTCCAA+GGG | 0.562683 | 2_3:+54499400 | Msa0299540:CDS |
| GGACTGTATTGAGCTCATCT+GGG | 0.562988 | 2_3:+54501382 | Msa0299540:CDS |
| AATTGAAGTTGAAAATTCGA+AGG | 0.567007 | 2_3:+54502659 | Msa0299540:three_prime_UTR |
| GGATTTCGATATACTACATA+CGG | 0.568022 | 2_3:+54498871 | Msa0299540:five_prime_UTR |
| TTGGTTTGGGAAGAGAAAGG+AGG | 0.568112 | 2_3:-54499289 | None:intergenic |
| CCATCTGATTACTTATGGTG+TGG | 0.569311 | 2_3:+54501331 | Msa0299540:CDS |
| AGCCGATTGTATATAATAGG+CGG | 0.571592 | 2_3:-54502976 | None:intergenic |
| AATAGTGAGAAAGAGATCCA+TGG | 0.572551 | 2_3:-54500520 | None:intergenic |
| ATTAAATTATTCTTCTTTGG+GGG | 0.575116 | 2_3:+54502942 | Msa0299540:three_prime_UTR |
| ACAACCCACCATTGTTGGAA+AGG | 0.581867 | 2_3:-54500657 | None:intergenic |
| GGGCTTTGAGAAGGGAAGGA+GGG | 0.590501 | 2_3:-54499254 | None:intergenic |
| ATCAGAATCCCGAAAATCTG+AGG | 0.598586 | 2_3:+54502234 | Msa0299540:CDS |
| ACTCTCAACTGGAAGAGAAG+AGG | 0.604661 | 2_3:-54498957 | None:intergenic |
| GGTCAAAAGCAACTTTAGCA+GGG | 0.608265 | 2_3:-54500680 | None:intergenic |
| TAAGTAATCAGATGGGCGAA+AGG | 0.609767 | 2_3:-54501323 | None:intergenic |
| CATAATCAGCTCCGTTACAG+AGG | 0.615880 | 2_3:+54499327 | Msa0299540:CDS |
| CTCAACTGGAAGAGAAGAGG+GGG | 0.622743 | 2_3:-54498954 | None:intergenic |
| TGCTTCACGATCCTCTGTAA+CGG | 0.624438 | 2_3:-54499338 | None:intergenic |
| AAAGGAGGTAAGGAGATGTG+GGG | 0.626162 | 2_3:-54499274 | None:intergenic |
| CAATAATCACCTCACACAGT+TGG | 0.632374 | 2_3:-54500547 | None:intergenic |
| CGCACGCACAATGTCAACGT+GGG | 0.632810 | 2_3:+54498850 | None:intergenic |
| AATAGAAGAAGCAACTGACA+TGG | 0.637698 | 2_3:-54499227 | None:intergenic |
| ACTGACACTGATATTCTCAC+CGG | 0.639131 | 2_3:+54499439 | Msa0299540:CDS |
| ACAGGATTGTACATAATAGG+CGG | 0.644993 | 2_3:-54502895 | None:intergenic |
| GTGTGGTTCCTGTGGAACAA+AGG | 0.645875 | 2_3:+54501348 | Msa0299540:CDS |
| ACCTCTGTGATACCCTTGGA+AGG | 0.647729 | 2_3:-54499412 | None:intergenic |
| CTATTACTACCAACTGTGTG+AGG | 0.652660 | 2_3:+54500538 | Msa0299540:CDS |
| TCTCAACTGGAAGAGAAGAG+GGG | 0.668650 | 2_3:-54498955 | None:intergenic |
| CACACCATAAGTAATCAGAT+GGG | 0.679652 | 2_3:-54501330 | None:intergenic |
| GCGAAGAAGAAACCTCCTCG+AGG | 0.711152 | 2_3:-54499390 | None:intergenic |
| AAAAGACAGAAAAGTCCTCG+AGG | 0.718772 | 2_3:+54499375 | Msa0299540:CDS |
| GCCTTCCAAGGGTATCACAG+AGG | 0.723856 | 2_3:+54499411 | Msa0299540:CDS |
| AGACAGAAAAGTCCTCGAGG+AGG | 0.726431 | 2_3:+54499378 | Msa0299540:CDS |
| TCGCACGCACAATGTCAACG+TGG | 0.743406 | 2_3:+54498849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTGTTTCT+AGG | + | chr2_3:54502197-54502216 | Msa0299540:intron | 10.0% |
| !! | AATATTAAATTATTCTTCTT+TGG | + | chr2_3:54502939-54502958 | Msa0299540:three_prime_UTR | 10.0% |
| !! | ATATTAAATTATTCTTCTTT+GGG | + | chr2_3:54502940-54502959 | Msa0299540:three_prime_UTR | 10.0% |
| !! | GCATATATATTATATATAAC+AGG | + | chr2_3:54499046-54499065 | Msa0299540:five_prime_UTR | 15.0% |
| !! | ATAAATTAAGAAACATAGTT+TGG | - | chr2_3:54499967-54499986 | None:intergenic | 15.0% |
| !!! | ACAAATTTTTTTTTTTCAGT+CGG | + | chr2_3:54501465-54501484 | Msa0299540:intron | 15.0% |
| !! | TTAAATGAGATTTAATTACA+AGG | - | chr2_3:54501645-54501664 | None:intergenic | 15.0% |
| !! | AATTAAATCTCATTTAAGAA+TGG | + | chr2_3:54501648-54501667 | Msa0299540:intron | 15.0% |
| !!! | TAAGCAAAAATCAATTTTTT+AGG | + | chr2_3:54501814-54501833 | Msa0299540:intron | 15.0% |
| !!! | GAATTAGAATTTTTAATCAT+AGG | - | chr2_3:54502450-54502469 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCTTCTTTG+GGG | + | chr2_3:54502941-54502960 | Msa0299540:three_prime_UTR | 15.0% |
| !! | CAATTGTATGAGTTTAAAAA+TGG | - | chr2_3:54499023-54499042 | None:intergenic | 20.0% |
| !!! | CATTTTTAAACTCATACAAT+TGG | + | chr2_3:54499021-54499040 | Msa0299540:five_prime_UTR | 20.0% |
| !!! | AAAGAAAGATTTTGTTTGTT+TGG | - | chr2_3:54499193-54499212 | None:intergenic | 20.0% |
| !! | ATAGAAAAAGAAGCAAAATT+TGG | - | chr2_3:54499572-54499591 | None:intergenic | 20.0% |
| !!! | TCAATAATAAGCTAGTTTAT+TGG | - | chr2_3:54499643-54499662 | None:intergenic | 20.0% |
| !!! | TGTATTTTCTGTATTGTAAA+TGG | + | chr2_3:54500157-54500176 | Msa0299540:intron | 20.0% |
| !!! | TAAGAACTTATTTGTTTCTT+AGG | + | chr2_3:54500823-54500842 | Msa0299540:intron | 20.0% |
| !!! | AAGAACTTATTTGTTTCTTA+GGG | + | chr2_3:54500824-54500843 | Msa0299540:intron | 20.0% |
| !! | GATAAAAAATCAATTCAAAC+AGG | - | chr2_3:54500850-54500869 | None:intergenic | 20.0% |
| !!! | TGAATTGATTTTTTATCTAC+TGG | + | chr2_3:54500853-54500872 | Msa0299540:intron | 20.0% |
| !! | TGTTACAAAAATAAAGCAAA+AGG | + | chr2_3:54501113-54501132 | Msa0299540:intron | 20.0% |
| !! | CATTCATTAAATGATGTATT+TGG | + | chr2_3:54501839-54501858 | Msa0299540:intron | 20.0% |
| !!! | TAAGCAAAAATCAACTTTTT+AGG | - | chr2_3:54501903-54501922 | None:intergenic | 20.0% |
| !! | ATGACAGAAAAATAATACAA+CGG | - | chr2_3:54502320-54502339 | None:intergenic | 20.0% |
| !!! | TATTTTTCTGTCATGTTTTA+AGG | + | chr2_3:54502326-54502345 | Msa0299540:intron | 20.0% |
| !! | CAATATATTGAGAAAATTGA+TGG | - | chr2_3:54502491-54502510 | None:intergenic | 20.0% |
| !! | AATAAAACTGCGTAAAAATA+TGG | + | chr2_3:54502555-54502574 | Msa0299540:exon | 20.0% |
| !! | ATAAAACTGCGTAAAAATAT+GGG | + | chr2_3:54502556-54502575 | Msa0299540:exon | 20.0% |
| !! | ATTAAATTATTCTTCTTTGG+GGG | + | chr2_3:54502942-54502961 | Msa0299540:three_prime_UTR | 20.0% |
| !!! | ATAGCATCTTTATTTTACGT+GGG | - | chr2_3:54498992-54499011 | None:intergenic | 25.0% |
| !!! | AATAGCATCTTTATTTTACG+TGG | - | chr2_3:54498993-54499012 | None:intergenic | 25.0% |
| ! | TTGTATGAGTTTAAAAATGG+AGG | - | chr2_3:54499020-54499039 | None:intergenic | 25.0% |
| !! | AAATTAATTAAGGGATTGGT+GGG | - | chr2_3:54499166-54499185 | None:intergenic | 25.0% |
| !! | TTTGGTGCGAAATTAATTAA+GGG | - | chr2_3:54499175-54499194 | None:intergenic | 25.0% |
| ! | TCTTTCTTTAAATTCTCTCA+TGG | + | chr2_3:54499204-54499223 | Msa0299540:exon | 25.0% |
| ! | TGCTATAATCTAGTAGAAAA+AGG | + | chr2_3:54499769-54499788 | Msa0299540:intron | 25.0% |
| !! | TATTTTCTAATGACTCTGTT+CGG | - | chr2_3:54499874-54499893 | None:intergenic | 25.0% |
| ! | AGTTTGGTATAGATAGAATA+TGG | - | chr2_3:54499951-54499970 | None:intergenic | 25.0% |
| ! | TAAAGCCAAATTAAGAAACA+CGG | - | chr2_3:54500011-54500030 | None:intergenic | 25.0% |
| ! | ATGTATTATAGTAAAGCAGA+CGG | + | chr2_3:54500110-54500129 | Msa0299540:intron | 25.0% |
| ! | AAGAAGTTGAAAACTGATTA+GGG | + | chr2_3:54500180-54500199 | Msa0299540:intron | 25.0% |
| !!! | AAATCCAGTTTTAGCTAAAA+TGG | + | chr2_3:54500290-54500309 | Msa0299540:CDS | 25.0% |
| !! | CTTCATAGCACTATATATTT+TGG | - | chr2_3:54500436-54500455 | None:intergenic | 25.0% |
| ! | CAAAATATATAGTGCTATGA+AGG | + | chr2_3:54500434-54500453 | Msa0299540:intron | 25.0% |
| ! | ATTATTGTACATCTTTGGTT+TGG | + | chr2_3:54500563-54500582 | Msa0299540:intron | 25.0% |
| !! | AGTCAAACTATTTTCATACA+AGG | - | chr2_3:54500928-54500947 | None:intergenic | 25.0% |
| !! | GTAATTTTATTGTACTGTCA+CGG | + | chr2_3:54501052-54501071 | Msa0299540:intron | 25.0% |
| ! | GAGAAAATTGATGAAAGAAA+GGG | + | chr2_3:54501135-54501154 | Msa0299540:intron | 25.0% |
| ! | AGAAAATTGATGAAAGAAAG+GGG | + | chr2_3:54501136-54501155 | Msa0299540:intron | 25.0% |
| ! | AAAAACCAAACCAGATTAAT+TGG | + | chr2_3:54501551-54501570 | Msa0299540:intron | 25.0% |
| ! | TATGAGATACTTATCCAAAA+GGG | - | chr2_3:54501619-54501638 | None:intergenic | 25.0% |
| ! | AATATAGAGAAGAGTAGAAA+AGG | + | chr2_3:54501679-54501698 | Msa0299540:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr2_3:54501913-54501932 | Msa0299540:intron | 25.0% |
| ! | AAAAACCAGACCAATTTAAT+TGG | + | chr2_3:54502105-54502124 | Msa0299540:intron | 25.0% |
| ! | AAAATCCAATTAAATTGGTC+TGG | - | chr2_3:54502113-54502132 | None:intergenic | 25.0% |
| ! | AACGCAAAATCCAATTAAAT+TGG | - | chr2_3:54502118-54502137 | None:intergenic | 25.0% |
| !! | TCTTAGTTACCTTAGAATTT+TGG | - | chr2_3:54502294-54502313 | None:intergenic | 25.0% |
| ! | TAAAACTGCGTAAAAATATG+GGG | + | chr2_3:54502557-54502576 | Msa0299540:exon | 25.0% |
| ! | AATTGAAGTTGAAAATTCGA+AGG | + | chr2_3:54502659-54502678 | Msa0299540:three_prime_UTR | 25.0% |
| !! | TATGTTTTACTTCTTCTTTG+AGG | + | chr2_3:54502861-54502880 | Msa0299540:three_prime_UTR | 25.0% |
| !! | ATGTTTTACTTCTTCTTTGA+GGG | + | chr2_3:54502862-54502881 | Msa0299540:three_prime_UTR | 25.0% |
| ! | TATACAGGATTGTACATAAT+AGG | - | chr2_3:54502901-54502920 | None:intergenic | 25.0% |
| ! | TTAAATTATTCTTCTTTGGG+GGG | + | chr2_3:54502943-54502962 | Msa0299540:three_prime_UTR | 25.0% |
| GGATTTCGATATACTACATA+CGG | + | chr2_3:54498871-54498890 | Msa0299540:five_prime_UTR | 30.0% | |
| TTTGATTCTACAGAGAAAGA+AGG | - | chr2_3:54499136-54499155 | None:intergenic | 30.0% | |
| GAAATTAATTAAGGGATTGG+TGG | - | chr2_3:54499167-54499186 | None:intergenic | 30.0% | |
| TGCGAAATTAATTAAGGGAT+TGG | - | chr2_3:54499170-54499189 | None:intergenic | 30.0% | |
| !! | GTTTGGTGCGAAATTAATTA+AGG | - | chr2_3:54499176-54499195 | None:intergenic | 30.0% |
| ATGATCAATTGTGAGCAATT+TGG | - | chr2_3:54499515-54499534 | None:intergenic | 30.0% | |
| TCACAATTGATCATGATTAC+TGG | + | chr2_3:54499521-54499540 | Msa0299540:CDS | 30.0% | |
| GATTGAACTTAAGCTTATAG+AGG | + | chr2_3:54499598-54499617 | Msa0299540:intron | 30.0% | |
| ! | ATTGAGTTGTTTATCCAAAG+AGG | + | chr2_3:54499909-54499928 | Msa0299540:intron | 30.0% |
| TTTGACTATAATGATCTGTC+AGG | - | chr2_3:54500035-54500054 | None:intergenic | 30.0% | |
| TGTATTATAGTAAAGCAGAC+GGG | + | chr2_3:54500111-54500130 | Msa0299540:intron | 30.0% | |
| GAAGAAGTTGAAAACTGATT+AGG | + | chr2_3:54500179-54500198 | Msa0299540:intron | 30.0% | |
| TGATTAGGGTTTCATAATTC+AGG | + | chr2_3:54500194-54500213 | Msa0299540:intron | 30.0% | |
| GATTAGGGTTTCATAATTCA+GGG | + | chr2_3:54500195-54500214 | Msa0299540:intron | 30.0% | |
| !!! | ATTGCCATTTTAGCTAAAAC+TGG | - | chr2_3:54500297-54500316 | None:intergenic | 30.0% |
| TTAGCTAAAATGGCAATAAG+TGG | + | chr2_3:54500300-54500319 | Msa0299540:CDS | 30.0% | |
| !! | CTCAGGTATGTTTTTGAATT+TGG | + | chr2_3:54500352-54500371 | Msa0299540:intron | 30.0% |
| ! | AAATTATGAAGTGCCTATGT+TGG | + | chr2_3:54500382-54500401 | Msa0299540:intron | 30.0% |
| !! | TATTTAGATCAGGTCTTGTT+GGG | + | chr2_3:54500489-54500508 | Msa0299540:CDS | 30.0% |
| AGGTGATTATTGTACATCTT+TGG | + | chr2_3:54500558-54500577 | Msa0299540:intron | 30.0% | |
| !!! | TACATCTTTGGTTTGGATTT+TGG | + | chr2_3:54500570-54500589 | Msa0299540:intron | 30.0% |
| !!! | GATTTTTTATCTACTGGCAT+AGG | + | chr2_3:54500859-54500878 | Msa0299540:intron | 30.0% |
| GGAGAAAATTGATGAAAGAA+AGG | + | chr2_3:54501134-54501153 | Msa0299540:intron | 30.0% | |
| TAGTTCAAACCAACAATTCA+AGG | + | chr2_3:54501175-54501194 | Msa0299540:intron | 30.0% | |
| ATTGTTCATCCTTGAATTGT+TGG | - | chr2_3:54501187-54501206 | None:intergenic | 30.0% | |
| TCTAAACAAACAATTGTCTG+TGG | - | chr2_3:54501235-54501254 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTTCCCTAGTTT+GGG | - | chr2_3:54501540-54501559 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTTTTCCCTAGTT+TGG | - | chr2_3:54501541-54501560 | None:intergenic | 30.0% |
| ACAATTCACACCAATTAATC+TGG | - | chr2_3:54501564-54501583 | None:intergenic | 30.0% | |
| !!! | TTTTAAGTTCTTTGAGTCGT+TGG | + | chr2_3:54501586-54501605 | Msa0299540:intron | 30.0% |
| GTATGAGATACTTATCCAAA+AGG | - | chr2_3:54501620-54501639 | None:intergenic | 30.0% | |
| AGAGTAGAAAAGGAAAACAA+AGG | + | chr2_3:54501689-54501708 | Msa0299540:intron | 30.0% | |
| ! | AATATTTCGCAAAGCATCAA+GGG | - | chr2_3:54502032-54502051 | None:intergenic | 30.0% |
| AAATGTTGAACAGAATGCAT+TGG | + | chr2_3:54502070-54502089 | Msa0299540:intron | 30.0% | |
| ! | TAATTGGATTTTGCGTTCAT+TGG | + | chr2_3:54502121-54502140 | Msa0299540:intron | 30.0% |
| ! | AATTGGATTTTGCGTTCATT+GGG | + | chr2_3:54502122-54502141 | Msa0299540:intron | 30.0% |
| GTACTATTACTGTTAGAATG+TGG | - | chr2_3:54502407-54502426 | None:intergenic | 30.0% | |
| !!! | TTTTTACGCAGTTTTATTCC+TGG | - | chr2_3:54502553-54502572 | None:intergenic | 30.0% |
| ATCCGCCTATTATATACAAT+CGG | + | chr2_3:54502974-54502993 | Msa0299540:three_prime_UTR | 30.0% | |
| ! | GGTTCTAGTTGAGAATTGAT+TGG | - | chr2_3:54499115-54499134 | None:intergenic | 35.0% |
| AATAGAAGAAGCAACTGACA+TGG | - | chr2_3:54499230-54499249 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTGGGAAGAGAA+AGG | - | chr2_3:54499295-54499314 | None:intergenic | 35.0% |
| !!! | TATGATACGACGTCGTTTTT+TGG | - | chr2_3:54499311-54499330 | None:intergenic | 35.0% |
| ATCTCATATTCACACCTCTT+TGG | - | chr2_3:54499926-54499945 | None:intergenic | 35.0% | |
| GTATTATAGTAAAGCAGACG+GGG | + | chr2_3:54500112-54500131 | Msa0299540:intron | 35.0% | |
| AATATGTGCCTGAACACAAT+TGG | + | chr2_3:54500241-54500260 | Msa0299540:CDS | 35.0% | |
| TTGTCTACTCAATTGGAGAT+TGG | + | chr2_3:54500325-54500344 | Msa0299540:CDS | 35.0% | |
| ACGAAAATCCTATCCAACAT+AGG | - | chr2_3:54500398-54500417 | None:intergenic | 35.0% | |
| GCTCGATCAAACTCAAAAAT+AGG | - | chr2_3:54500464-54500483 | None:intergenic | 35.0% | |
| ! | CTATTTAGATCAGGTCTTGT+TGG | + | chr2_3:54500488-54500507 | Msa0299540:CDS | 35.0% |
| AATAGTGAGAAAGAGATCCA+TGG | - | chr2_3:54500523-54500542 | None:intergenic | 35.0% | |
| ! | CTCTTTTTCCTTTCCAACAA+TGG | + | chr2_3:54500649-54500668 | Msa0299540:CDS | 35.0% |
| ! | TTTTTCCTTTCCAACAATGG+TGG | + | chr2_3:54500652-54500671 | Msa0299540:CDS | 35.0% |
| ! | TTTTCCTTTCCAACAATGGT+GGG | + | chr2_3:54500653-54500672 | Msa0299540:CDS | 35.0% |
| ! | ACCATCTACTTTGTGGTTTT+GGG | + | chr2_3:54500729-54500748 | Msa0299540:CDS | 35.0% |
| GACTCTTTGGATAACATCTA+TGG | + | chr2_3:54500765-54500784 | Msa0299540:intron | 35.0% | |
| TAAGTTCTTACAGTGAGCAT+GGG | - | chr2_3:54500813-54500832 | None:intergenic | 35.0% | |
| ATAAGTTCTTACAGTGAGCA+TGG | - | chr2_3:54500814-54500833 | None:intergenic | 35.0% | |
| ATTACAGCATGTGAACAAAG+AGG | - | chr2_3:54501037-54501056 | None:intergenic | 35.0% | |
| TTCACTCTAATATGCTTCAC+AGG | + | chr2_3:54501283-54501302 | Msa0299540:intron | 35.0% | |
| CACACCATAAGTAATCAGAT+GGG | - | chr2_3:54501333-54501352 | None:intergenic | 35.0% | |
| TCACACCAATTAATCTGGTT+TGG | - | chr2_3:54501559-54501578 | None:intergenic | 35.0% | |
| GAAAAGGAAAACAAAGGAGA+AGG | + | chr2_3:54501695-54501714 | Msa0299540:intron | 35.0% | |
| TTCATTATTGTAGCCGATTG+CGG | - | chr2_3:54501743-54501762 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | - | chr2_3:54501800-54501819 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | - | chr2_3:54501801-54501820 | None:intergenic | 35.0% | |
| ! | CAATATTTCGCAAAGCATCA+AGG | - | chr2_3:54502033-54502052 | None:intergenic | 35.0% |
| GCGAAATATTGAGAGTTTGT+CGG | + | chr2_3:54502042-54502061 | Msa0299540:intron | 35.0% | |
| TACACCAAGCCAAAATTCTA+AGG | + | chr2_3:54502282-54502301 | Msa0299540:CDS | 35.0% | |
| !!! | GTTACCTTAGAATTTTGGCT+TGG | - | chr2_3:54502289-54502308 | None:intergenic | 35.0% |
| ATTTCGTGATAAGTTTCACG+AGG | - | chr2_3:54502363-54502382 | None:intergenic | 35.0% | |
| ! | AGTCATCAAATGCTTTTGCA+AGG | - | chr2_3:54502616-54502635 | None:intergenic | 35.0% |
| AGGATCTCAATTGAAGTTGA+AGG | + | chr2_3:54502679-54502698 | Msa0299540:three_prime_UTR | 35.0% | |
| !! | TATACTTGTTGTGCATCCTT+TGG | + | chr2_3:54502753-54502772 | Msa0299540:three_prime_UTR | 35.0% |
| ACAGGATTGTACATAATAGG+CGG | - | chr2_3:54502898-54502917 | None:intergenic | 35.0% | |
| GCATCGTATGTTCTTTATAC+AGG | - | chr2_3:54502916-54502935 | None:intergenic | 35.0% | |
| GTATAAAGAACATACGATGC+TGG | + | chr2_3:54502916-54502935 | Msa0299540:three_prime_UTR | 35.0% | |
| !!! | ACGACGTCGTTTTTTGGTTT+GGG | - | chr2_3:54499305-54499324 | None:intergenic | 40.0% |
| !!! | TACGACGTCGTTTTTTGGTT+TGG | - | chr2_3:54499306-54499325 | None:intergenic | 40.0% |
| AAAAGACAGAAAAGTCCTCG+AGG | + | chr2_3:54499375-54499394 | Msa0299540:CDS | 40.0% | |
| ACTGACACTGATATTCTCAC+CGG | + | chr2_3:54499439-54499458 | Msa0299540:CDS | 40.0% | |
| ! | AAGAACGATTGCAGCATTGA+TGG | - | chr2_3:54499470-54499489 | None:intergenic | 40.0% |
| ATCAATGCTGCAATCGTTCT+TGG | + | chr2_3:54499469-54499488 | Msa0299540:CDS | 40.0% | |
| CGTTGCCGTGTTTCTTAATT+TGG | + | chr2_3:54500003-54500022 | Msa0299540:intron | 40.0% | |
| AGGGTTTCATAATTCAGGGT+TGG | + | chr2_3:54500199-54500218 | Msa0299540:intron | 40.0% | |
| TAGGCAATCCAATTGTGTTC+AGG | - | chr2_3:54500252-54500271 | None:intergenic | 40.0% | |
| TGCTTTCAGAGATTGCTCAT+AGG | - | chr2_3:54500271-54500290 | None:intergenic | 40.0% | |
| AGTGGAGTTGTCTACTCAAT+TGG | + | chr2_3:54500318-54500337 | Msa0299540:CDS | 40.0% | |
| AATTGGAGATTGGATTGCTC+AGG | + | chr2_3:54500335-54500354 | Msa0299540:CDS | 40.0% | |
| ! | ATGAAGTGCCTATGTTGGAT+AGG | + | chr2_3:54500387-54500406 | Msa0299540:intron | 40.0% |
| !!! | TTTTTGAGTTTGATCGAGCG+CGG | + | chr2_3:54500465-54500484 | Msa0299540:CDS | 40.0% |
| CTATTACTACCAACTGTGTG+AGG | + | chr2_3:54500538-54500557 | Msa0299540:CDS | 40.0% | |
| CAATAATCACCTCACACAGT+TGG | - | chr2_3:54500550-54500569 | None:intergenic | 40.0% | |
| TTGTTTGCGTTGTGTAACAC+AGG | + | chr2_3:54500626-54500645 | Msa0299540:intron | 40.0% | |
| GGTCAAAAGCAACTTTAGCA+GGG | - | chr2_3:54500683-54500702 | None:intergenic | 40.0% | |
| TGGTCAAAAGCAACTTTAGC+AGG | - | chr2_3:54500684-54500703 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGACCAAACTGTG+TGG | + | chr2_3:54500691-54500710 | Msa0299540:CDS | 40.0% |
| AAATAGCTGACCACACAGTT+TGG | - | chr2_3:54500704-54500723 | None:intergenic | 40.0% | |
| AAACTGTGTGGTCAGCTATT+TGG | + | chr2_3:54500703-54500722 | Msa0299540:CDS | 40.0% | |
| TTGGAACACCATCTACTTTG+TGG | + | chr2_3:54500722-54500741 | Msa0299540:CDS | 40.0% | |
| ! | CACCATCTACTTTGTGGTTT+TGG | + | chr2_3:54500728-54500747 | Msa0299540:CDS | 40.0% |
| ACCCAAAACCACAAAGTAGA+TGG | - | chr2_3:54500733-54500752 | None:intergenic | 40.0% | |
| TTTGTTGCGTTTCGACTCTT+TGG | + | chr2_3:54500752-54500771 | Msa0299540:intron | 40.0% | |
| TAAGTAATCAGATGGGCGAA+AGG | - | chr2_3:54501326-54501345 | None:intergenic | 40.0% | |
| TTCGCCCATCTGATTACTTA+TGG | + | chr2_3:54501326-54501345 | Msa0299540:CDS | 40.0% | |
| CCACACCATAAGTAATCAGA+TGG | - | chr2_3:54501334-54501353 | None:intergenic | 40.0% | |
| CCATCTGATTACTTATGGTG+TGG | + | chr2_3:54501331-54501350 | Msa0299540:CDS | 40.0% | |
| TGTGGAACAAAGGCTTCTTT+GGG | + | chr2_3:54501358-54501377 | Msa0299540:CDS | 40.0% | |
| GAGTTCAATAAGACCGCAAT+CGG | + | chr2_3:54501727-54501746 | Msa0299540:intron | 40.0% | |
| GAGTAAGTATATACTCCCTC+TGG | + | chr2_3:54501782-54501801 | Msa0299540:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr2_3:54501916-54501935 | Msa0299540:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr2_3:54501917-54501936 | Msa0299540:intron | 40.0% | |
| ATCAGAATCCCGAAAATCTG+AGG | + | chr2_3:54502234-54502253 | Msa0299540:CDS | 40.0% | |
| ! | TGACACTTCCTCAGATTTTC+GGG | - | chr2_3:54502245-54502264 | None:intergenic | 40.0% |
| ! | CTGACACTTCCTCAGATTTT+CGG | - | chr2_3:54502246-54502265 | None:intergenic | 40.0% |
| TCTATATGTTGTGTACTGCC+AGG | + | chr2_3:54502532-54502551 | Msa0299540:intron | 40.0% | |
| TCTCAACTGGAAGAGAAGAG+GGG | - | chr2_3:54498958-54498977 | None:intergenic | 45.0% | |
| CTCTCAACTGGAAGAGAAGA+GGG | - | chr2_3:54498959-54498978 | None:intergenic | 45.0% | |
| ACTCTCAACTGGAAGAGAAG+AGG | - | chr2_3:54498960-54498979 | None:intergenic | 45.0% | |
| AAAGGAGGTAAGGAGATGTG+GGG | - | chr2_3:54499277-54499296 | None:intergenic | 45.0% | |
| GAAAGGAGGTAAGGAGATGT+GGG | - | chr2_3:54499278-54499297 | None:intergenic | 45.0% | |
| AGAAAGGAGGTAAGGAGATG+TGG | - | chr2_3:54499279-54499298 | None:intergenic | 45.0% | |
| TTGGGAAGAGAAAGGAGGTA+AGG | - | chr2_3:54499287-54499306 | None:intergenic | 45.0% | |
| !! | TTGGTTTGGGAAGAGAAAGG+AGG | - | chr2_3:54499292-54499311 | None:intergenic | 45.0% |
| CATAATCAGCTCCGTTACAG+AGG | + | chr2_3:54499327-54499346 | Msa0299540:CDS | 45.0% | |
| TGCTTCACGATCCTCTGTAA+CGG | - | chr2_3:54499341-54499360 | None:intergenic | 45.0% | |
| GTTTCTTCTTCGCCTTCCAA+GGG | + | chr2_3:54499400-54499419 | Msa0299540:CDS | 45.0% | |
| GCTGCAATCGTTCTTGGATT+TGG | + | chr2_3:54499475-54499494 | Msa0299540:CDS | 45.0% | |
| TTATAGTAAAGCAGACGGGG+AGG | + | chr2_3:54500115-54500134 | Msa0299540:intron | 45.0% | |
| CTTGTTGGGTTTACTCTCCA+TGG | + | chr2_3:54500503-54500522 | Msa0299540:CDS | 45.0% | |
| ACAACCCACCATTGTTGGAA+AGG | - | chr2_3:54500660-54500679 | None:intergenic | 45.0% | |
| TAGGCACTTGCGAAACTCTT+TGG | + | chr2_3:54500878-54500897 | Msa0299540:intron | 45.0% | |
| ATGAAAGAAAGGGGTCAGAG+AGG | + | chr2_3:54501145-54501164 | Msa0299540:intron | 45.0% | |
| CTCTAATATGCTTCACAGGC+AGG | + | chr2_3:54501287-54501306 | Msa0299540:intron | 45.0% | |
| TACTTATGGTGTGGTTCCTG+TGG | + | chr2_3:54501340-54501359 | Msa0299540:CDS | 45.0% | |
| CAAAGAAGCCTTTGTTCCAC+AGG | - | chr2_3:54501359-54501378 | None:intergenic | 45.0% | |
| CTGTGGAACAAAGGCTTCTT+TGG | + | chr2_3:54501357-54501376 | Msa0299540:CDS | 45.0% | |
| TGGACTGTATTGAGCTCATC+TGG | + | chr2_3:54501381-54501400 | Msa0299540:CDS | 45.0% | |
| GGACTGTATTGAGCTCATCT+GGG | + | chr2_3:54501382-54501401 | Msa0299540:CDS | 45.0% | |
| TCCGCTCAATGTTTCAGTGT+GGG | - | chr2_3:54501507-54501526 | None:intergenic | 45.0% | |
| TTCCGCTCAATGTTTCAGTG+TGG | - | chr2_3:54501508-54501527 | None:intergenic | 45.0% | |
| AAACATTGAGCGGAATGCGT+TGG | + | chr2_3:54501513-54501532 | Msa0299540:intron | 45.0% | |
| AATGCGTTGGACCCAAACTA+GGG | + | chr2_3:54501526-54501545 | Msa0299540:intron | 45.0% | |
| !!! | TCGTTGGTTCAATGCCCTTT+TGG | + | chr2_3:54501602-54501621 | Msa0299540:intron | 45.0% |
| TGCTTATTGTGTACTCCCTC+CGG | - | chr2_3:54501935-54501954 | None:intergenic | 45.0% | |
| ! | AAAGCATCAAGGGTTTGAGG+GGG | - | chr2_3:54502022-54502041 | None:intergenic | 45.0% |
| ! | CAAAGCATCAAGGGTTTGAG+GGG | - | chr2_3:54502023-54502042 | None:intergenic | 45.0% |
| ! | GCAAAGCATCAAGGGTTTGA+GGG | - | chr2_3:54502024-54502043 | None:intergenic | 45.0% |
| !! | GAGGAAGTGTCAGAAACAAC+AGG | + | chr2_3:54502253-54502272 | Msa0299540:CDS | 45.0% |
| TAAGTTTCACGAGGACTCTC+TGG | - | chr2_3:54502354-54502373 | None:intergenic | 45.0% | |
| !! | ACTTGTTGTGCATCCTTTGG+CGG | + | chr2_3:54502756-54502775 | Msa0299540:three_prime_UTR | 45.0% |
| GAATAATTCGTCACCGCCAA+AGG | - | chr2_3:54502772-54502791 | None:intergenic | 45.0% | |
| TTGGCGGTGACGAATTATTC+AGG | + | chr2_3:54502772-54502791 | Msa0299540:three_prime_UTR | 45.0% | |
| CTCAACTGGAAGAGAAGAGG+GGG | - | chr2_3:54498957-54498976 | None:intergenic | 50.0% | |
| GGAACTCTGTCACTCTCAAC+TGG | - | chr2_3:54498971-54498990 | None:intergenic | 50.0% | |
| !! | GAGATGTGGGGCTTTGAGAA+GGG | - | chr2_3:54499265-54499284 | None:intergenic | 50.0% |
| AGAGGATCGTGAAGCAGCTT+CGG | + | chr2_3:54499345-54499364 | Msa0299540:CDS | 50.0% | |
| AGACAGAAAAGTCCTCGAGG+AGG | + | chr2_3:54499378-54499397 | Msa0299540:CDS | 50.0% | |
| GGTTTCTTCTTCGCCTTCCA+AGG | + | chr2_3:54499399-54499418 | Msa0299540:CDS | 50.0% | |
| ACCTCTGTGATACCCTTGGA+AGG | - | chr2_3:54499415-54499434 | None:intergenic | 50.0% | |
| AGCAACCTCTGTGATACCCT+TGG | - | chr2_3:54499419-54499438 | None:intergenic | 50.0% | |
| AATATGCTTCACAGGCAGGC+TGG | + | chr2_3:54501291-54501310 | Msa0299540:intron | 50.0% | |
| GTGTGGTTCCTGTGGAACAA+AGG | + | chr2_3:54501348-54501367 | Msa0299540:CDS | 50.0% | |
| GGAACAAAGGCTTCTTTGGG+TGG | + | chr2_3:54501361-54501380 | Msa0299540:CDS | 50.0% | |
| GCCCACACTGAAACATTGAG+CGG | + | chr2_3:54501503-54501522 | Msa0299540:intron | 50.0% | |
| GAATGCGTTGGACCCAAACT+AGG | + | chr2_3:54501525-54501544 | Msa0299540:intron | 50.0% | |
| ! | CGCAAAGCATCAAGGGTTTG+AGG | - | chr2_3:54502025-54502044 | None:intergenic | 50.0% |
| !! | TTGCGGTGCTGTGCTGGAAA+TGG | - | chr2_3:54498928-54498947 | None:intergenic | 55.0% |
| !! | GGGCTTTGAGAAGGGAAGGA+GGG | - | chr2_3:54499257-54499276 | None:intergenic | 55.0% |
| !! | TGTGGGGCTTTGAGAAGGGA+AGG | - | chr2_3:54499261-54499280 | None:intergenic | 55.0% |
| !! | GGAGATGTGGGGCTTTGAGA+AGG | - | chr2_3:54499266-54499285 | None:intergenic | 55.0% |
| GCGAAGAAGAAACCTCCTCG+AGG | - | chr2_3:54499393-54499412 | None:intergenic | 55.0% | |
| !! | GCCTTCCAAGGGTATCACAG+AGG | + | chr2_3:54499411-54499430 | Msa0299540:CDS | 55.0% |
| !! | TGCAGCATTGATGGCACGTC+CGG | - | chr2_3:54499461-54499480 | None:intergenic | 55.0% |
| AGTAAAGCAGACGGGGAGGA+TGG | + | chr2_3:54500119-54500138 | Msa0299540:intron | 55.0% | |
| CGAGCGCGGCTATTTAGATC+AGG | + | chr2_3:54500479-54500498 | Msa0299540:CDS | 55.0% | |
| CAGGGACAACCCACCATTGT+TGG | - | chr2_3:54500665-54500684 | None:intergenic | 55.0% | |
| ! | AGAAGAGGGGGTGCGGATTG+CGG | - | chr2_3:54498945-54498964 | None:intergenic | 60.0% |
| CTGGAAGAGAAGAGGGGGTG+CGG | - | chr2_3:54498952-54498971 | None:intergenic | 60.0% | |
| !! | GGGGCTTTGAGAAGGGAAGG+AGG | - | chr2_3:54499258-54499277 | None:intergenic | 60.0% |
| CACAGGCAGGCTGGAAGCTT+TGG | + | chr2_3:54501300-54501319 | Msa0299540:intron | 60.0% | |
| !! | TGCGGATTGCGGTGCTGTGC+TGG | - | chr2_3:54498934-54498953 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54498854 | 54502997 | 54498854 | ID=Msa0299540;Name=Msa0299540 |
| chr2_3 | mRNA | 54498854 | 54502997 | 54498854 | ID=Msa0299540-mRNA-1;Parent=Msa0299540;Name=Msa0299540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=369|0.83|0.71|1|1|1|7|438|294 |
| chr2_3 | exon | 54498854 | 54499546 | 54498854 | ID=Msa0299540-mRNA-1:exon:17427;Parent=Msa0299540-mRNA-1 |
| chr2_3 | exon | 54500216 | 54500356 | 54500216 | ID=Msa0299540-mRNA-1:exon:17428;Parent=Msa0299540-mRNA-1 |
| chr2_3 | exon | 54500446 | 54500559 | 54500446 | ID=Msa0299540-mRNA-1:exon:17429;Parent=Msa0299540-mRNA-1 |
| chr2_3 | exon | 54500648 | 54500750 | 54500648 | ID=Msa0299540-mRNA-1:exon:17430;Parent=Msa0299540-mRNA-1 |
| chr2_3 | exon | 54501309 | 54501420 | 54501309 | ID=Msa0299540-mRNA-1:exon:17431;Parent=Msa0299540-mRNA-1 |
| chr2_3 | exon | 54502219 | 54502303 | 54502219 | ID=Msa0299540-mRNA-1:exon:17432;Parent=Msa0299540-mRNA-1 |
| chr2_3 | exon | 54502554 | 54502997 | 54502554 | ID=Msa0299540-mRNA-1:exon:17433;Parent=Msa0299540-mRNA-1 |
| chr2_3 | five_prime_UTR | 54498854 | 54499222 | 54498854 | ID=Msa0299540-mRNA-1:five_prime_utr;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54499223 | 54499546 | 54499223 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54500216 | 54500356 | 54500216 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54500446 | 54500559 | 54500446 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54500648 | 54500750 | 54500648 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54501309 | 54501420 | 54501309 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54502219 | 54502303 | 54502219 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | CDS | 54502554 | 54502559 | 54502554 | ID=Msa0299540-mRNA-1:cds;Parent=Msa0299540-mRNA-1 |
| chr2_3 | three_prime_UTR | 54502560 | 54502997 | 54502560 | ID=Msa0299540-mRNA-1:three_prime_utr;Parent=Msa0299540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
