Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093940 | XP_013465057.1 | 88.088 | 319 | 11 | 2 | 1 | 293 | 1 | 318 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093940 | sp|Q754F0|SYM1_ASHGO | 26.705 | 176 | 98 | 3 | 127 | 272 | 8 | 182 | 1.14e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093940 | A0A072VBB5 | 88.088 | 319 | 11 | 2 | 1 | 293 | 1 | 318 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093940 | Msa0220410 | 0.909958 | 3.200952e-82 | -8.615850e-47 |
| Msa0093940 | Msa0261650 | 0.915989 | 3.050339e-85 | -8.615850e-47 |
| Msa0093940 | Msa0299540 | 0.944670 | 1.273059e-103 | -8.615850e-47 |
| Msa0093940 | Msa0619320 | 0.809717 | 1.647894e-50 | -8.615850e-47 |
| Msa0093940 | Msa1144610 | -0.806205 | 9.211152e-50 | -8.615850e-47 |
| Msa0093940 | Msa1344080 | 0.810322 | 1.221048e-50 | -8.615850e-47 |
| Msa0093940 | Msa1344610 | 0.816069 | 6.687284e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093940 | MtrunA17_Chr2g0324001 | 88.088 | 319 | 11 | 2 | 1 | 293 | 1 | 318 | 0.0 | 558 |
| Msa0093940 | MtrunA17_Chr2g0318131 | 64.453 | 256 | 65 | 1 | 57 | 286 | 110 | 365 | 2.01e-119 | 347 |
| Msa0093940 | MtrunA17_Chr2g0324031 | 84.848 | 33 | 5 | 0 | 194 | 226 | 26 | 58 | 1.09e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093940 | AT4G03410.2 | 61.783 | 314 | 84 | 3 | 5 | 289 | 13 | 319 | 7.54e-139 | 396 |
| Msa0093940 | AT4G03410.1 | 62.258 | 310 | 81 | 3 | 5 | 285 | 13 | 315 | 1.07e-138 | 394 |
| Msa0093940 | AT1G52870.2 | 54.830 | 352 | 84 | 5 | 2 | 280 | 3 | 352 | 5.28e-125 | 361 |
| Msa0093940 | AT1G52870.1 | 53.333 | 270 | 77 | 4 | 2 | 224 | 3 | 270 | 7.63e-92 | 275 |
Find 112 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGTTACCTTAGAATTT+TGG | 0.151729 | 1_2:+77023539 | None:intergenic |
| AATATTAAATTATTCTTCTT+TGG | 0.169387 | 1_2:-77022874 | Msa0093940:three_prime_UTR |
| CTGTGGAACAAAGGCTTCTT+TGG | 0.173165 | 1_2:-77024474 | Msa0093940:CDS |
| GTTTGGTGCGAAATTAATTA+AGG | 0.189591 | 1_2:+77026659 | None:intergenic |
| CACAGGCAGGCTGGAAGCTT+TGG | 0.250296 | 1_2:-77024531 | Msa0093940:intron |
| TTCGCCCATCTGATTACTTA+TGG | 0.254055 | 1_2:-77024505 | Msa0093940:CDS |
| ATCAATGCTGCAATCGTTCT+TGG | 0.258440 | 1_2:-77026363 | Msa0093940:CDS |
| GCTGCAATCGTTCTTGGATT+TGG | 0.262559 | 1_2:-77026357 | Msa0093940:CDS |
| ATATTAAATTATTCTTCTTT+GGG | 0.263210 | 1_2:-77022873 | Msa0093940:three_prime_UTR |
| TCCGCCTATTATATACTTTC+CGG | 0.278321 | 1_2:-77022820 | Msa0093940:three_prime_UTR |
| AAACTGTGTGGTCAGCTATT+TGG | 0.279478 | 1_2:-77025128 | Msa0093940:CDS |
| TGGACTGTATTGAGCTCATC+TGG | 0.292811 | 1_2:-77024450 | Msa0093940:CDS |
| TATACAGGATTGTACATAAT+AGG | 0.312831 | 1_2:+77022915 | None:intergenic |
| TGCGGATTGCGGTGCTGTGC+TGG | 0.314198 | 1_2:+77026895 | None:intergenic |
| ATGATCAATTGTGAGCAATT+TGG | 0.323543 | 1_2:+77026320 | None:intergenic |
| GCATCGTATGTTCTTTATAC+AGG | 0.347558 | 1_2:+77022900 | None:intergenic |
| ACAACCGGAAAGTATATAAT+AGG | 0.349601 | 1_2:+77022816 | None:intergenic |
| TCACAATTGATCATGATTAC+TGG | 0.351701 | 1_2:-77026311 | Msa0093940:CDS |
| TTGGCGGTGACGAATTATTC+AGG | 0.353350 | 1_2:-77023041 | Msa0093940:three_prime_UTR |
| TACACCAATCCAAAATTCTA+AGG | 0.355059 | 1_2:-77023548 | Msa0093940:intron |
| TGTGGAACAAAGGCTTCTTT+GGG | 0.369696 | 1_2:-77024473 | Msa0093940:CDS |
| CTTGTTGGGTTTACTCTCCA+TGG | 0.385473 | 1_2:-77025328 | Msa0093940:CDS |
| TATACTTGTTGTGCATCCTT+TGG | 0.387734 | 1_2:-77023060 | Msa0093940:three_prime_UTR |
| CTATTTAGATCAGGTCTTGT+TGG | 0.390942 | 1_2:-77025343 | Msa0093940:CDS |
| TTTGGTGCGAAATTAATTAA+GGG | 0.392774 | 1_2:+77026660 | None:intergenic |
| AAGAACGATTGCAGCATTGA+TGG | 0.399238 | 1_2:+77026365 | None:intergenic |
| AGTGGAGTTGTCTACTCAAT+TGG | 0.403111 | 1_2:-77025514 | Msa0093940:CDS |
| TTGGAACACCATCTACTTTG+TGG | 0.406483 | 1_2:-77025109 | Msa0093940:intron |
| TATTTAGATCAGGTCTTGTT+GGG | 0.406785 | 1_2:-77025342 | Msa0093940:CDS |
| TGCGAAATTAATTAAGGGAT+TGG | 0.407194 | 1_2:+77026665 | None:intergenic |
| TGGTCAAAAGCAACTTTAGC+AGG | 0.412786 | 1_2:+77025150 | None:intergenic |
| GCATATATATTATATATAAC+AGG | 0.415788 | 1_2:-77026780 | Msa0093940:five_prime_UTR |
| GAAAGGAGGTAAGGAGATGT+GGG | 0.419167 | 1_2:+77026557 | None:intergenic |
| GGAACTCTGTCACTCTCAAC+TGG | 0.421878 | 1_2:+77026858 | None:intergenic |
| AAATAGCTGACCACACAGTT+TGG | 0.423298 | 1_2:+77025130 | None:intergenic |
| CAGGGACAACCCACCATTGT+TGG | 0.429883 | 1_2:+77025169 | None:intergenic |
| AGAAAGGAGGTAAGGAGATG+TGG | 0.435548 | 1_2:+77026556 | None:intergenic |
| ATAGGCGGATTGTATATAAT+AGG | 0.435845 | 1_2:+77022834 | None:intergenic |
| TTGTCTACTCAATTGGAGAT+TGG | 0.442062 | 1_2:-77025507 | Msa0093940:CDS |
| TAGGCAATCCAATTGTGTTC+AGG | 0.443916 | 1_2:+77025583 | None:intergenic |
| TGCAGCATTGATGGCACGTC+CGG | 0.446757 | 1_2:+77026374 | None:intergenic |
| TTGGGAAGAGAAAGGAGGTA+AGG | 0.452969 | 1_2:+77026548 | None:intergenic |
| GGTTTCTTCTTCGCCTTCCA+AGG | 0.454215 | 1_2:-77026433 | Msa0093940:CDS |
| ACCCAAAACCACAAAGTAGA+TGG | 0.457211 | 1_2:+77025101 | None:intergenic |
| AGAGGATCGTGAAGCAGCTT+CGG | 0.458460 | 1_2:-77026487 | Msa0093940:CDS |
| CAAAATATATAGTGCTATGA+AGG | 0.459856 | 1_2:-77025397 | Msa0093940:intron |
| TTGCGGTGCTGTGCTGGAAA+TGG | 0.468112 | 1_2:+77026901 | None:intergenic |
| GAGATGTGGGGCTTTGAGAA+GGG | 0.469500 | 1_2:+77026570 | None:intergenic |
| TCTTTCTTTAAATTCTCTCA+TGG | 0.476604 | 1_2:-77026628 | Msa0093940:exon |
| GGTTCTAGTTGAGAATTGAT+TGG | 0.477105 | 1_2:+77026720 | None:intergenic |
| AAATTAATTAAGGGATTGGT+GGG | 0.477447 | 1_2:+77026669 | None:intergenic |
| AAGTGATAATAGATTACAAC+CGG | 0.480845 | 1_2:+77022801 | None:intergenic |
| AATATGTGCCTGAACACAAT+TGG | 0.484652 | 1_2:-77025591 | Msa0093940:CDS |
| TTTGATTCTACAGAGAAAGA+AGG | 0.485854 | 1_2:+77026699 | None:intergenic |
| AATTGGAGATTGGATTGCTC+AGG | 0.486533 | 1_2:-77025497 | Msa0093940:intron |
| TGCTTTCAGAGATTGCTCAT+AGG | 0.490513 | 1_2:+77025564 | None:intergenic |
| GAGGAAGTGTCAGAAACAAC+AGG | 0.491215 | 1_2:-77023577 | Msa0093940:CDS |
| CTCTCAACTGGAAGAGAAGA+GGG | 0.492330 | 1_2:+77026870 | None:intergenic |
| TTAGCTAAAATGGCAATAAG+TGG | 0.494093 | 1_2:-77025532 | Msa0093940:CDS |
| AATATGCTTCACAGGCAGGC+TGG | 0.502341 | 1_2:-77024540 | Msa0093940:intron |
| GGAGATGTGGGGCTTTGAGA+AGG | 0.505377 | 1_2:+77026569 | None:intergenic |
| AGGATCTCAATTGAAGTTGA+AGG | 0.512181 | 1_2:-77023134 | Msa0093940:three_prime_UTR |
| GAAATTAATTAAGGGATTGG+TGG | 0.516216 | 1_2:+77026668 | None:intergenic |
| TACTTATGGTGTGGTTCCTG+TGG | 0.517838 | 1_2:-77024491 | Msa0093940:CDS |
| ACTTGTTGTGCATCCTTTGG+CGG | 0.518337 | 1_2:-77023057 | Msa0093940:three_prime_UTR |
| AGCAACCTCTGTGATACCCT+TGG | 0.523659 | 1_2:+77026416 | None:intergenic |
| GTATAAAGAACATACGATGC+TGG | 0.523748 | 1_2:-77022897 | Msa0093940:three_prime_UTR |
| GAATAATTCGTCACCGCCAA+AGG | 0.526939 | 1_2:+77023044 | None:intergenic |
| GGGGCTTTGAGAAGGGAAGG+AGG | 0.527578 | 1_2:+77026577 | None:intergenic |
| TTAAATTATTCTTCTTTGGG+GGG | 0.531443 | 1_2:-77022870 | Msa0093940:three_prime_UTR |
| CGAGCGCGGCTATTTAGATC+AGG | 0.532514 | 1_2:-77025352 | Msa0093940:CDS |
| CAAAGAAGCCTTTGTTCCAC+AGG | 0.539036 | 1_2:+77024475 | None:intergenic |
| TGTGGGGCTTTGAGAAGGGA+AGG | 0.541270 | 1_2:+77026574 | None:intergenic |
| GGAACAAAGGCTTCTTTGGG+TGG | 0.543292 | 1_2:-77024470 | Msa0093940:CDS |
| TATTAAATTATTCTTCTTTG+GGG | 0.545614 | 1_2:-77022872 | Msa0093940:three_prime_UTR |
| CCACACCATAAGTAATCAGA+TGG | 0.560187 | 1_2:+77024500 | None:intergenic |
| GTTTCTTCTTCGCCTTCCAA+GGG | 0.562683 | 1_2:-77026432 | Msa0093940:CDS |
| GGACTGTATTGAGCTCATCT+GGG | 0.562988 | 1_2:-77024449 | Msa0093940:CDS |
| AATTGAAGTTGAAAATTCGA+AGG | 0.567007 | 1_2:-77023154 | Msa0093940:three_prime_UTR |
| GGATTTCGATATACTACATA+CGG | 0.568022 | 1_2:-77026955 | Msa0093940:five_prime_UTR |
| TTGGTTTGGGAAGAGAAAGG+AGG | 0.568112 | 1_2:+77026543 | None:intergenic |
| CCATCTGATTACTTATGGTG+TGG | 0.569311 | 1_2:-77024500 | Msa0093940:CDS |
| AATAGTGAGAAAGAGATCCA+TGG | 0.572551 | 1_2:+77025311 | None:intergenic |
| ATTAAATTATTCTTCTTTGG+GGG | 0.575116 | 1_2:-77022871 | Msa0093940:three_prime_UTR |
| TGACTCAGCTTAAAATTCGA+AGG | 0.575848 | 1_2:-77023182 | Msa0093940:three_prime_UTR |
| ACAACCCACCATTGTTGGAA+AGG | 0.581867 | 1_2:+77025174 | None:intergenic |
| GGGCTTTGAGAAGGGAAGGA+GGG | 0.590501 | 1_2:+77026578 | None:intergenic |
| ATCAGAATCCCGAAAATCTG+AGG | 0.598586 | 1_2:-77023596 | Msa0093940:CDS |
| ACTCTCAACTGGAAGAGAAG+AGG | 0.604661 | 1_2:+77026869 | None:intergenic |
| GGTCAAAAGCAACTTTAGCA+GGG | 0.608265 | 1_2:+77025151 | None:intergenic |
| TAAGTAATCAGATGGGCGAA+AGG | 0.609767 | 1_2:+77024508 | None:intergenic |
| CATAATCAGCTCCGTTACAG+AGG | 0.615880 | 1_2:-77026505 | Msa0093940:CDS |
| CTCAACTGGAAGAGAAGAGG+GGG | 0.622743 | 1_2:+77026872 | None:intergenic |
| TGCTTCACGATCCTCTGTAA+CGG | 0.624438 | 1_2:+77026494 | None:intergenic |
| AAAGGAGGTAAGGAGATGTG+GGG | 0.626162 | 1_2:+77026558 | None:intergenic |
| AAATAACCACCTCACACAGT+TGG | 0.629043 | 1_2:+77025284 | None:intergenic |
| CGCACGCACAATGTCAACGT+GGG | 0.632810 | 1_2:-77026976 | None:intergenic |
| AATAGAAGAAGCAACTGACA+TGG | 0.637698 | 1_2:+77026605 | None:intergenic |
| ACTGACACTGATATTCTCAC+CGG | 0.639131 | 1_2:-77026393 | Msa0093940:CDS |
| ACCGGAAAGTATATAATAGG+CGG | 0.640507 | 1_2:+77022819 | None:intergenic |
| GGCGGATTGTATATAATAGG+CGG | 0.640755 | 1_2:+77022837 | None:intergenic |
| ACAGGATTGTACATAATAGG+CGG | 0.644993 | 1_2:+77022918 | None:intergenic |
| GTGTGGTTCCTGTGGAACAA+AGG | 0.645875 | 1_2:-77024483 | Msa0093940:CDS |
| ACCTCTGTGATACCCTTGGA+AGG | 0.647729 | 1_2:+77026420 | None:intergenic |
| CTATTACTACCAACTGTGTG+AGG | 0.652660 | 1_2:-77025293 | Msa0093940:intron |
| TCTCAACTGGAAGAGAAGAG+GGG | 0.668650 | 1_2:+77026871 | None:intergenic |
| CACACCATAAGTAATCAGAT+GGG | 0.679652 | 1_2:+77024501 | None:intergenic |
| GCGAAGAAGAAACCTCCTCG+AGG | 0.711152 | 1_2:+77026442 | None:intergenic |
| AAAAGACAGAAAAGTCCTCG+AGG | 0.718772 | 1_2:-77026457 | Msa0093940:CDS |
| GCCTTCCAAGGGTATCACAG+AGG | 0.723856 | 1_2:-77026421 | Msa0093940:CDS |
| AGACAGAAAAGTCCTCGAGG+AGG | 0.726431 | 1_2:-77026454 | Msa0093940:CDS |
| TCGCACGCACAATGTCAACG+TGG | 0.743406 | 1_2:-77026977 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTGTTTCT+AGG | - | chr1_2:77026131-77026150 | Msa0093940:intron | 10.0% |
| !! | AATATTAAATTATTCTTCTT+TGG | - | chr1_2:77026890-77026909 | Msa0093940:five_prime_UTR | 10.0% |
| !! | ATATTAAATTATTCTTCTTT+GGG | - | chr1_2:77026891-77026910 | Msa0093940:five_prime_UTR | 10.0% |
| !! | GCATATATATTATATATAAC+AGG | - | chr1_2:77022984-77023003 | Msa0093940:three_prime_UTR | 15.0% |
| !! | ATAAATTAAGAAACATAGTT+TGG | + | chr1_2:77023899-77023918 | None:intergenic | 15.0% |
| !! | TTAAATGAGATTTAATTACA+AGG | + | chr1_2:77025577-77025596 | None:intergenic | 15.0% |
| !! | AATTAAATCTCATTTAAGAA+TGG | - | chr1_2:77025580-77025599 | Msa0093940:CDS | 15.0% |
| !!! | TAAGCAAAAATCAATTTTTT+AGG | - | chr1_2:77025746-77025765 | Msa0093940:intron | 15.0% |
| !!! | GAATTAGAATTTTTAATCAT+AGG | + | chr1_2:77026384-77026403 | None:intergenic | 15.0% |
| !! | TATTAAATTATTCTTCTTTG+GGG | - | chr1_2:77026892-77026911 | Msa0093940:five_prime_UTR | 15.0% |
| !! | CAATTGTATGAGTTTAAAAA+TGG | + | chr1_2:77022961-77022980 | None:intergenic | 20.0% |
| !!! | CATTTTTAAACTCATACAAT+TGG | - | chr1_2:77022959-77022978 | Msa0093940:three_prime_UTR | 20.0% |
| !!! | AAAGAAAGATTTTGTTTGTT+TGG | + | chr1_2:77023125-77023144 | None:intergenic | 20.0% |
| !! | ATAGAAAAAGAAGCAAAATT+TGG | + | chr1_2:77023504-77023523 | None:intergenic | 20.0% |
| !!! | TCAATAATAAGCTAGTTTAT+TGG | + | chr1_2:77023575-77023594 | None:intergenic | 20.0% |
| !! | ATGTATTATAGTAAAGCAAA+CGG | - | chr1_2:77024042-77024061 | Msa0093940:intron | 20.0% |
| !!! | TGTATTTTCTGTATTGTAAA+TGG | - | chr1_2:77024089-77024108 | Msa0093940:intron | 20.0% |
| !!! | TAAGAACTTATTTGTTTCTT+AGG | - | chr1_2:77024756-77024775 | Msa0093940:intron | 20.0% |
| !!! | AAGAACTTATTTGTTTCTTA+GGG | - | chr1_2:77024757-77024776 | Msa0093940:intron | 20.0% |
| !! | GATAAAAAATCAATTCAAAC+AGG | + | chr1_2:77024783-77024802 | None:intergenic | 20.0% |
| !!! | TGAATTGATTTTTTATCTAC+TGG | - | chr1_2:77024786-77024805 | Msa0093940:intron | 20.0% |
| !! | TGTTACAAAAATAAAGCAAA+AGG | - | chr1_2:77025046-77025065 | Msa0093940:intron | 20.0% |
| !!! | CACAAATTTTTTTTTTCAGT+CGG | - | chr1_2:77025397-77025416 | Msa0093940:intron | 20.0% |
| !! | CATTCATTAAATGATGTATT+TGG | - | chr1_2:77025771-77025790 | Msa0093940:intron | 20.0% |
| !!! | TAAGCAAAAATCAACTTTTT+AGG | + | chr1_2:77025835-77025854 | None:intergenic | 20.0% |
| !! | ATGACAGAAAAATAATACAA+CGG | + | chr1_2:77026254-77026273 | None:intergenic | 20.0% |
| !!! | TATTTTTCTGTCATGTTTTA+AGG | - | chr1_2:77026260-77026279 | Msa0093940:intron | 20.0% |
| !! | CAATATATTGAGAAAATTGA+TGG | + | chr1_2:77026425-77026444 | None:intergenic | 20.0% |
| !! | AATAAAACTGCGTAAAAATA+TGG | - | chr1_2:77026489-77026508 | Msa0093940:CDS | 20.0% |
| !! | ATAAAACTGCGTAAAAATAT+GGG | - | chr1_2:77026490-77026509 | Msa0093940:CDS | 20.0% |
| !! | AAAAACTATATATAGGTTCA+TGG | - | chr1_2:77026515-77026534 | Msa0093940:CDS | 20.0% |
| !! | ATTAAATTATTCTTCTTTGG+GGG | - | chr1_2:77026893-77026912 | Msa0093940:five_prime_UTR | 20.0% |
| !!! | ATAGCATCTTTATTTTACGT+GGG | + | chr1_2:77022930-77022949 | None:intergenic | 25.0% |
| !!! | AATAGCATCTTTATTTTACG+TGG | + | chr1_2:77022931-77022950 | None:intergenic | 25.0% |
| ! | TTGTATGAGTTTAAAAATGG+AGG | + | chr1_2:77022958-77022977 | None:intergenic | 25.0% |
| !! | AAATTAATTAAGGGATTGGT+GGG | + | chr1_2:77023098-77023117 | None:intergenic | 25.0% |
| !! | TTTGGTGCGAAATTAATTAA+GGG | + | chr1_2:77023107-77023126 | None:intergenic | 25.0% |
| ! | TCTTTCTTTAAATTCTCTCA+TGG | - | chr1_2:77023136-77023155 | Msa0093940:three_prime_UTR | 25.0% |
| ! | TGCTATAATCTAGTAGAAAA+AGG | - | chr1_2:77023701-77023720 | Msa0093940:intron | 25.0% |
| !! | TATTTTCTAATGACTCTGTT+CGG | + | chr1_2:77023806-77023825 | None:intergenic | 25.0% |
| ! | AGTTTGGTATAGATAGAATA+TGG | + | chr1_2:77023883-77023902 | None:intergenic | 25.0% |
| ! | TAAAGCCAAATTAAGAAACA+CGG | + | chr1_2:77023943-77023962 | None:intergenic | 25.0% |
| ! | TGTATTATAGTAAAGCAAAC+GGG | - | chr1_2:77024043-77024062 | Msa0093940:intron | 25.0% |
| ! | AAGAAGTTGAAAACTGATTA+GGG | - | chr1_2:77024112-77024131 | Msa0093940:intron | 25.0% |
| !!! | AAATCCAGTTTTAGCTAAAA+TGG | - | chr1_2:77024222-77024241 | Msa0093940:intron | 25.0% |
| !! | AAATTATGAAGTGCTTATGT+TGG | - | chr1_2:77024314-77024333 | Msa0093940:intron | 25.0% |
| !! | CTTCATAGCACTATATATTT+TGG | + | chr1_2:77024369-77024388 | None:intergenic | 25.0% |
| ! | CAAAATATATAGTGCTATGA+AGG | - | chr1_2:77024367-77024386 | Msa0093940:intron | 25.0% |
| !!! | GTTATTTTACATCTTTGGTT+TGG | - | chr1_2:77024496-77024515 | Msa0093940:CDS | 25.0% |
| !! | AGTCAAACTATTTTCATACA+AGG | + | chr1_2:77024861-77024880 | None:intergenic | 25.0% |
| !! | GTAATTTTATTGTACTGTCA+AGG | - | chr1_2:77024985-77025004 | Msa0093940:intron | 25.0% |
| ! | GAGAAAATTGATGAAAGAAA+GGG | - | chr1_2:77025068-77025087 | Msa0093940:intron | 25.0% |
| ! | AGAAAATTGATGAAAGAAAG+GGG | - | chr1_2:77025069-77025088 | Msa0093940:intron | 25.0% |
| ! | AAAAACCAAACCAGATTAAT+TGG | - | chr1_2:77025483-77025502 | Msa0093940:intron | 25.0% |
| ! | TATGAGATACTTATCCAAAA+GGG | + | chr1_2:77025551-77025570 | None:intergenic | 25.0% |
| ! | AATATAGAGAAGAGTAGAAA+AGG | - | chr1_2:77025611-77025630 | Msa0093940:CDS | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr1_2:77025845-77025864 | Msa0093940:intron | 25.0% |
| ! | AAAAACCAGACCAATTTAAT+TGG | - | chr1_2:77026037-77026056 | Msa0093940:intron | 25.0% |
| ! | AAAATCCAATTAAATTGGTC+TGG | + | chr1_2:77026045-77026064 | None:intergenic | 25.0% |
| ! | AACGCAAAATCCAATTAAAT+TGG | + | chr1_2:77026050-77026069 | None:intergenic | 25.0% |
| !! | TCTTAGTTACCTTAGAATTT+TGG | + | chr1_2:77026228-77026247 | None:intergenic | 25.0% |
| ! | TAAAACTGCGTAAAAATATG+GGG | - | chr1_2:77026491-77026510 | Msa0093940:CDS | 25.0% |
| ! | ATGGGGAAAAAACTATATAT+AGG | - | chr1_2:77026508-77026527 | Msa0093940:CDS | 25.0% |
| ! | AATTGAAGTTGAAAATTCGA+AGG | - | chr1_2:77026610-77026629 | Msa0093940:CDS | 25.0% |
| !! | TATGTTTTACTTCTTCTTTG+AGG | - | chr1_2:77026812-77026831 | Msa0093940:five_prime_UTR | 25.0% |
| !! | ATGTTTTACTTCTTCTTTGA+GGG | - | chr1_2:77026813-77026832 | Msa0093940:five_prime_UTR | 25.0% |
| ! | TATACAGGATTGTACATAAT+AGG | + | chr1_2:77026852-77026871 | None:intergenic | 25.0% |
| ! | TTAAATTATTCTTCTTTGGG+GGG | - | chr1_2:77026894-77026913 | Msa0093940:five_prime_UTR | 25.0% |
| ! | AAGTGATAATAGATTACAAC+CGG | + | chr1_2:77026966-77026985 | None:intergenic | 25.0% |
| GGATTTCGATATACTACATA+CGG | - | chr1_2:77022809-77022828 | Msa0093940:three_prime_UTR | 30.0% | |
| TTTGATTCTACAGAGAAAGA+AGG | + | chr1_2:77023068-77023087 | None:intergenic | 30.0% | |
| GAAATTAATTAAGGGATTGG+TGG | + | chr1_2:77023099-77023118 | None:intergenic | 30.0% | |
| TGCGAAATTAATTAAGGGAT+TGG | + | chr1_2:77023102-77023121 | None:intergenic | 30.0% | |
| !! | GTTTGGTGCGAAATTAATTA+AGG | + | chr1_2:77023108-77023127 | None:intergenic | 30.0% |
| ATGATCAATTGTGAGCAATT+TGG | + | chr1_2:77023447-77023466 | None:intergenic | 30.0% | |
| TCACAATTGATCATGATTAC+TGG | - | chr1_2:77023453-77023472 | Msa0093940:intron | 30.0% | |
| GATTGAACTTAAGCTTATAG+AGG | - | chr1_2:77023530-77023549 | Msa0093940:intron | 30.0% | |
| ! | ATTGAGTTGTTTATCCAAAG+AGG | - | chr1_2:77023841-77023860 | Msa0093940:intron | 30.0% |
| TTTGACTATAATGATCTGTC+AGG | + | chr1_2:77023967-77023986 | None:intergenic | 30.0% | |
| GTATTATAGTAAAGCAAACG+GGG | - | chr1_2:77024044-77024063 | Msa0093940:intron | 30.0% | |
| GAAGAAGTTGAAAACTGATT+AGG | - | chr1_2:77024111-77024130 | Msa0093940:intron | 30.0% | |
| TGATTAGGGTTTCATAATTC+AGG | - | chr1_2:77024126-77024145 | Msa0093940:intron | 30.0% | |
| GATTAGGGTTTCATAATTCA+GGG | - | chr1_2:77024127-77024146 | Msa0093940:intron | 30.0% | |
| !!! | ATTGCCATTTTAGCTAAAAC+TGG | + | chr1_2:77024229-77024248 | None:intergenic | 30.0% |
| TTAGCTAAAATGGCAATAAG+TGG | - | chr1_2:77024232-77024251 | Msa0093940:intron | 30.0% | |
| !! | CTCAGGTATGTTTTTGAATT+TGG | - | chr1_2:77024284-77024303 | Msa0093940:intron | 30.0% |
| !! | TATTTAGATCAGGTCTTGTT+GGG | - | chr1_2:77024422-77024441 | Msa0093940:intron | 30.0% |
| !! | AGGTGGTTATTTTACATCTT+TGG | - | chr1_2:77024491-77024510 | Msa0093940:CDS | 30.0% |
| !!! | TACATCTTTGGTTTGGATTT+TGG | - | chr1_2:77024503-77024522 | Msa0093940:CDS | 30.0% |
| !!! | GATTTTTTATCTACTGGCAT+AGG | - | chr1_2:77024792-77024811 | Msa0093940:intron | 30.0% |
| GGAGAAAATTGATGAAAGAA+AGG | - | chr1_2:77025067-77025086 | Msa0093940:intron | 30.0% | |
| TAGTTCAAACCAACAATTCA+AGG | - | chr1_2:77025108-77025127 | Msa0093940:intron | 30.0% | |
| ATTGTTCATCCTTGAATTGT+TGG | + | chr1_2:77025120-77025139 | None:intergenic | 30.0% | |
| TCTAAACAAACAATTGTCTG+TGG | + | chr1_2:77025168-77025187 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTTCCCTAGTTT+GGG | + | chr1_2:77025472-77025491 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTTTTCCCTAGTT+TGG | + | chr1_2:77025473-77025492 | None:intergenic | 30.0% |
| ACAATTCACACCAATTAATC+TGG | + | chr1_2:77025496-77025515 | None:intergenic | 30.0% | |
| !!! | TTTTAAGTTCTTTGAGTCGT+TGG | - | chr1_2:77025518-77025537 | Msa0093940:CDS | 30.0% |
| GTATGAGATACTTATCCAAA+AGG | + | chr1_2:77025552-77025571 | None:intergenic | 30.0% | |
| AGAGTAGAAAAGGAAAACAA+AGG | - | chr1_2:77025621-77025640 | Msa0093940:intron | 30.0% | |
| ! | AATATTTCGCAAAGCATCAA+GGG | + | chr1_2:77025964-77025983 | None:intergenic | 30.0% |
| AAATGTTGAACAGAATGCAT+TGG | - | chr1_2:77026002-77026021 | Msa0093940:intron | 30.0% | |
| ! | TAATTGGATTTTGCGTTCAT+TGG | - | chr1_2:77026053-77026072 | Msa0093940:intron | 30.0% |
| ! | AATTGGATTTTGCGTTCATT+GGG | - | chr1_2:77026054-77026073 | Msa0093940:intron | 30.0% |
| TACACCAATCCAAAATTCTA+AGG | - | chr1_2:77026216-77026235 | Msa0093940:intron | 30.0% | |
| ! | GTTACCTTAGAATTTTGGAT+TGG | + | chr1_2:77026223-77026242 | None:intergenic | 30.0% |
| GTACTATTACTGTTAGAATG+TGG | + | chr1_2:77026341-77026360 | None:intergenic | 30.0% | |
| !!! | TTTTTACGCAGTTTTATTCC+TGG | + | chr1_2:77026487-77026506 | None:intergenic | 30.0% |
| !! | ATAGGCGGATTGTATATAAT+AGG | + | chr1_2:77026933-77026952 | None:intergenic | 30.0% |
| ! | ACAACCGGAAAGTATATAAT+AGG | + | chr1_2:77026951-77026970 | None:intergenic | 30.0% |
| ! | GGTTCTAGTTGAGAATTGAT+TGG | + | chr1_2:77023047-77023066 | None:intergenic | 35.0% |
| AATAGAAGAAGCAACTGACA+TGG | + | chr1_2:77023162-77023181 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTGGGAAGAGAA+AGG | + | chr1_2:77023227-77023246 | None:intergenic | 35.0% |
| !!! | TATGATACGACGTCGTTTTT+TGG | + | chr1_2:77023243-77023262 | None:intergenic | 35.0% |
| ATCTCATATTCACACCTCTT+TGG | + | chr1_2:77023858-77023877 | None:intergenic | 35.0% | |
| AATATGTGCCTGAACACAAT+TGG | - | chr1_2:77024173-77024192 | Msa0093940:intron | 35.0% | |
| TTGTCTACTCAATTGGAGAT+TGG | - | chr1_2:77024257-77024276 | Msa0093940:intron | 35.0% | |
| ! | ATGAAGTGCTTATGTTGGAT+AGG | - | chr1_2:77024319-77024338 | Msa0093940:intron | 35.0% |
| ! | TGAAGTGCTTATGTTGGATA+GGG | - | chr1_2:77024320-77024339 | Msa0093940:intron | 35.0% |
| GCTCGATCAAACTCAAAAAT+AGG | + | chr1_2:77024397-77024416 | None:intergenic | 35.0% | |
| ! | CTATTTAGATCAGGTCTTGT+TGG | - | chr1_2:77024421-77024440 | Msa0093940:intron | 35.0% |
| AATAGTGAGAAAGAGATCCA+TGG | + | chr1_2:77024456-77024475 | None:intergenic | 35.0% | |
| ! | CTCTTTTTCCTTTCCAACAA+TGG | - | chr1_2:77024582-77024601 | Msa0093940:intron | 35.0% |
| ! | TTTTTCCTTTCCAACAATGG+TGG | - | chr1_2:77024585-77024604 | Msa0093940:intron | 35.0% |
| ! | TTTTCCTTTCCAACAATGGT+GGG | - | chr1_2:77024586-77024605 | Msa0093940:intron | 35.0% |
| ! | ACCATCTACTTTGTGGTTTT+GGG | - | chr1_2:77024662-77024681 | Msa0093940:intron | 35.0% |
| GACTCTTTGGATAACATCTA+TGG | - | chr1_2:77024698-77024717 | Msa0093940:intron | 35.0% | |
| TAAGTTCTTACAGTGAGCAT+GGG | + | chr1_2:77024746-77024765 | None:intergenic | 35.0% | |
| ATAAGTTCTTACAGTGAGCA+TGG | + | chr1_2:77024747-77024766 | None:intergenic | 35.0% | |
| ATTACAGCATGTGAACAAAG+AGG | + | chr1_2:77024970-77024989 | None:intergenic | 35.0% | |
| TTCACTCTAATATGCTTCAC+AGG | - | chr1_2:77025216-77025235 | Msa0093940:intron | 35.0% | |
| CACACCATAAGTAATCAGAT+GGG | + | chr1_2:77025266-77025285 | None:intergenic | 35.0% | |
| TCACACCAATTAATCTGGTT+TGG | + | chr1_2:77025491-77025510 | None:intergenic | 35.0% | |
| GAAAAGGAAAACAAAGGAGA+AGG | - | chr1_2:77025627-77025646 | Msa0093940:intron | 35.0% | |
| TTCATTATTGTAGCCGATTG+CGG | + | chr1_2:77025675-77025694 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | + | chr1_2:77025732-77025751 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | + | chr1_2:77025733-77025752 | None:intergenic | 35.0% | |
| ! | CAATATTTCGCAAAGCATCA+AGG | + | chr1_2:77025965-77025984 | None:intergenic | 35.0% |
| GCGAAATATTGAGAGTTTGT+CGG | - | chr1_2:77025974-77025993 | Msa0093940:intron | 35.0% | |
| ATTTCGTGATAAGTTTCACG+AGG | + | chr1_2:77026297-77026316 | None:intergenic | 35.0% | |
| ! | AGTCATCAAATGCTTTTGCA+AGG | + | chr1_2:77026567-77026586 | None:intergenic | 35.0% |
| TGACTCAGCTTAAAATTCGA+AGG | - | chr1_2:77026582-77026601 | Msa0093940:CDS | 35.0% | |
| AGGATCTCAATTGAAGTTGA+AGG | - | chr1_2:77026602-77026621 | Msa0093940:CDS | 35.0% | |
| !! | TATACTTGTTGTGCATCCTT+TGG | - | chr1_2:77026704-77026723 | Msa0093940:five_prime_UTR | 35.0% |
| ACAGGATTGTACATAATAGG+CGG | + | chr1_2:77026849-77026868 | None:intergenic | 35.0% | |
| GCATCGTATGTTCTTTATAC+AGG | + | chr1_2:77026867-77026886 | None:intergenic | 35.0% | |
| GTATAAAGAACATACGATGC+TGG | - | chr1_2:77026867-77026886 | Msa0093940:five_prime_UTR | 35.0% | |
| TCCGCCTATTATATACTTTC+CGG | - | chr1_2:77026944-77026963 | Msa0093940:five_prime_UTR | 35.0% | |
| ! | ACCGGAAAGTATATAATAGG+CGG | + | chr1_2:77026948-77026967 | None:intergenic | 35.0% |
| !!! | ACGACGTCGTTTTTTGGTTT+GGG | + | chr1_2:77023237-77023256 | None:intergenic | 40.0% |
| !!! | TACGACGTCGTTTTTTGGTT+TGG | + | chr1_2:77023238-77023257 | None:intergenic | 40.0% |
| AAAAGACAGAAAAGTCCTCG+AGG | - | chr1_2:77023307-77023326 | Msa0093940:intron | 40.0% | |
| ACTGACACTGATATTCTCAC+CGG | - | chr1_2:77023371-77023390 | Msa0093940:intron | 40.0% | |
| ! | AAGAACGATTGCAGCATTGA+TGG | + | chr1_2:77023402-77023421 | None:intergenic | 40.0% |
| ATCAATGCTGCAATCGTTCT+TGG | - | chr1_2:77023401-77023420 | Msa0093940:intron | 40.0% | |
| CGTTGCCGTGTTTCTTAATT+TGG | - | chr1_2:77023935-77023954 | Msa0093940:intron | 40.0% | |
| TTATAGTAAAGCAAACGGGG+AGG | - | chr1_2:77024047-77024066 | Msa0093940:intron | 40.0% | |
| AGGGTTTCATAATTCAGGGT+TGG | - | chr1_2:77024131-77024150 | Msa0093940:intron | 40.0% | |
| TAGGCAATCCAATTGTGTTC+AGG | + | chr1_2:77024184-77024203 | None:intergenic | 40.0% | |
| TGCTTTCAGAGATTGCTCAT+AGG | + | chr1_2:77024203-77024222 | None:intergenic | 40.0% | |
| AGTGGAGTTGTCTACTCAAT+TGG | - | chr1_2:77024250-77024269 | Msa0093940:intron | 40.0% | |
| AATTGGAGATTGGATTGCTC+AGG | - | chr1_2:77024267-77024286 | Msa0093940:intron | 40.0% | |
| !!! | TTTTTGAGTTTGATCGAGCG+CGG | - | chr1_2:77024398-77024417 | Msa0093940:intron | 40.0% |
| CTATTACTACCAACTGTGTG+AGG | - | chr1_2:77024471-77024490 | Msa0093940:CDS | 40.0% | |
| AAATAACCACCTCACACAGT+TGG | + | chr1_2:77024483-77024502 | None:intergenic | 40.0% | |
| TTGTTTGCGTTGTGTAACAC+AGG | - | chr1_2:77024559-77024578 | Msa0093940:intron | 40.0% | |
| GGTCAAAAGCAACTTTAGCA+GGG | + | chr1_2:77024616-77024635 | None:intergenic | 40.0% | |
| TGGTCAAAAGCAACTTTAGC+AGG | + | chr1_2:77024617-77024636 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGACCAAACTGTG+TGG | - | chr1_2:77024624-77024643 | Msa0093940:intron | 40.0% |
| AAATAGCTGACCACACAGTT+TGG | + | chr1_2:77024637-77024656 | None:intergenic | 40.0% | |
| AAACTGTGTGGTCAGCTATT+TGG | - | chr1_2:77024636-77024655 | Msa0093940:intron | 40.0% | |
| TTGGAACACCATCTACTTTG+TGG | - | chr1_2:77024655-77024674 | Msa0093940:intron | 40.0% | |
| ! | CACCATCTACTTTGTGGTTT+TGG | - | chr1_2:77024661-77024680 | Msa0093940:intron | 40.0% |
| ACCCAAAACCACAAAGTAGA+TGG | + | chr1_2:77024666-77024685 | None:intergenic | 40.0% | |
| TTTGTTGCGTTTCGACTCTT+TGG | - | chr1_2:77024685-77024704 | Msa0093940:intron | 40.0% | |
| TAAGTAATCAGATGGGCGAA+AGG | + | chr1_2:77025259-77025278 | None:intergenic | 40.0% | |
| TTCGCCCATCTGATTACTTA+TGG | - | chr1_2:77025259-77025278 | Msa0093940:intron | 40.0% | |
| CCACACCATAAGTAATCAGA+TGG | + | chr1_2:77025267-77025286 | None:intergenic | 40.0% | |
| CCATCTGATTACTTATGGTG+TGG | - | chr1_2:77025264-77025283 | Msa0093940:intron | 40.0% | |
| TGTGGAACAAAGGCTTCTTT+GGG | - | chr1_2:77025291-77025310 | Msa0093940:intron | 40.0% | |
| GAGTTCAATAAGACCGCAAT+CGG | - | chr1_2:77025659-77025678 | Msa0093940:intron | 40.0% | |
| GAGTAAGTATATACTCCCTC+TGG | - | chr1_2:77025714-77025733 | Msa0093940:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr1_2:77025848-77025867 | Msa0093940:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr1_2:77025849-77025868 | Msa0093940:intron | 40.0% | |
| ATCAGAATCCCGAAAATCTG+AGG | - | chr1_2:77026168-77026187 | Msa0093940:intron | 40.0% | |
| ! | TGACACTTCCTCAGATTTTC+GGG | + | chr1_2:77026179-77026198 | None:intergenic | 40.0% |
| ! | CTGACACTTCCTCAGATTTT+CGG | + | chr1_2:77026180-77026199 | None:intergenic | 40.0% |
| TCTATATGTTGTGTACTGCC+AGG | - | chr1_2:77026466-77026485 | Msa0093940:CDS | 40.0% | |
| !! | GGCGGATTGTATATAATAGG+CGG | + | chr1_2:77026930-77026949 | None:intergenic | 40.0% |
| TCTCAACTGGAAGAGAAGAG+GGG | + | chr1_2:77022896-77022915 | None:intergenic | 45.0% | |
| CTCTCAACTGGAAGAGAAGA+GGG | + | chr1_2:77022897-77022916 | None:intergenic | 45.0% | |
| ACTCTCAACTGGAAGAGAAG+AGG | + | chr1_2:77022898-77022917 | None:intergenic | 45.0% | |
| AAAGGAGGTAAGGAGATGTG+GGG | + | chr1_2:77023209-77023228 | None:intergenic | 45.0% | |
| GAAAGGAGGTAAGGAGATGT+GGG | + | chr1_2:77023210-77023229 | None:intergenic | 45.0% | |
| AGAAAGGAGGTAAGGAGATG+TGG | + | chr1_2:77023211-77023230 | None:intergenic | 45.0% | |
| TTGGGAAGAGAAAGGAGGTA+AGG | + | chr1_2:77023219-77023238 | None:intergenic | 45.0% | |
| !! | TTGGTTTGGGAAGAGAAAGG+AGG | + | chr1_2:77023224-77023243 | None:intergenic | 45.0% |
| CATAATCAGCTCCGTTACAG+AGG | - | chr1_2:77023259-77023278 | Msa0093940:three_prime_UTR | 45.0% | |
| TGCTTCACGATCCTCTGTAA+CGG | + | chr1_2:77023273-77023292 | None:intergenic | 45.0% | |
| GTTTCTTCTTCGCCTTCCAA+GGG | - | chr1_2:77023332-77023351 | Msa0093940:intron | 45.0% | |
| GCTGCAATCGTTCTTGGATT+TGG | - | chr1_2:77023407-77023426 | Msa0093940:intron | 45.0% | |
| CTTGTTGGGTTTACTCTCCA+TGG | - | chr1_2:77024436-77024455 | Msa0093940:CDS | 45.0% | |
| TTACTACCAACTGTGTGAGG+TGG | - | chr1_2:77024474-77024493 | Msa0093940:CDS | 45.0% | |
| ACAACCCACCATTGTTGGAA+AGG | + | chr1_2:77024593-77024612 | None:intergenic | 45.0% | |
| ATGAAAGAAAGGGGTCAGAG+AGG | - | chr1_2:77025078-77025097 | Msa0093940:intron | 45.0% | |
| CTCTAATATGCTTCACAGGC+AGG | - | chr1_2:77025220-77025239 | Msa0093940:intron | 45.0% | |
| TACTTATGGTGTGGTTCCTG+TGG | - | chr1_2:77025273-77025292 | Msa0093940:intron | 45.0% | |
| CAAAGAAGCCTTTGTTCCAC+AGG | + | chr1_2:77025292-77025311 | None:intergenic | 45.0% | |
| CTGTGGAACAAAGGCTTCTT+TGG | - | chr1_2:77025290-77025309 | Msa0093940:intron | 45.0% | |
| TGGACTGTATTGAGCTCATC+TGG | - | chr1_2:77025314-77025333 | Msa0093940:CDS | 45.0% | |
| GGACTGTATTGAGCTCATCT+GGG | - | chr1_2:77025315-77025334 | Msa0093940:CDS | 45.0% | |
| TCCGCTCAATGTTTCAGTGT+GGG | + | chr1_2:77025439-77025458 | None:intergenic | 45.0% | |
| TTCCGCTCAATGTTTCAGTG+TGG | + | chr1_2:77025440-77025459 | None:intergenic | 45.0% | |
| AAACATTGAGCGGAATGCGT+TGG | - | chr1_2:77025445-77025464 | Msa0093940:intron | 45.0% | |
| AATGCGTTGGACCCAAACTA+GGG | - | chr1_2:77025458-77025477 | Msa0093940:intron | 45.0% | |
| !!! | TCGTTGGTTCAATGCCCTTT+TGG | - | chr1_2:77025534-77025553 | Msa0093940:CDS | 45.0% |
| TGCTTATTGTGTACTCCCTC+CGG | + | chr1_2:77025867-77025886 | None:intergenic | 45.0% | |
| ! | AAAGCATCAAGGGTTTGAGG+GGG | + | chr1_2:77025954-77025973 | None:intergenic | 45.0% |
| ! | CAAAGCATCAAGGGTTTGAG+GGG | + | chr1_2:77025955-77025974 | None:intergenic | 45.0% |
| ! | GCAAAGCATCAAGGGTTTGA+GGG | + | chr1_2:77025956-77025975 | None:intergenic | 45.0% |
| !! | GAGGAAGTGTCAGAAACAAC+AGG | - | chr1_2:77026187-77026206 | Msa0093940:intron | 45.0% |
| TAAGTTTCACGAGGACTCTC+TGG | + | chr1_2:77026288-77026307 | None:intergenic | 45.0% | |
| !! | ACTTGTTGTGCATCCTTTGG+CGG | - | chr1_2:77026707-77026726 | Msa0093940:five_prime_UTR | 45.0% |
| GAATAATTCGTCACCGCCAA+AGG | + | chr1_2:77026723-77026742 | None:intergenic | 45.0% | |
| TTGGCGGTGACGAATTATTC+AGG | - | chr1_2:77026723-77026742 | Msa0093940:five_prime_UTR | 45.0% | |
| CTCAACTGGAAGAGAAGAGG+GGG | + | chr1_2:77022895-77022914 | None:intergenic | 50.0% | |
| GGAACTCTGTCACTCTCAAC+TGG | + | chr1_2:77022909-77022928 | None:intergenic | 50.0% | |
| !! | GAGATGTGGGGCTTTGAGAA+GGG | + | chr1_2:77023197-77023216 | None:intergenic | 50.0% |
| AGAGGATCGTGAAGCAGCTT+CGG | - | chr1_2:77023277-77023296 | Msa0093940:exon | 50.0% | |
| AGACAGAAAAGTCCTCGAGG+AGG | - | chr1_2:77023310-77023329 | Msa0093940:intron | 50.0% | |
| GGTTTCTTCTTCGCCTTCCA+AGG | - | chr1_2:77023331-77023350 | Msa0093940:intron | 50.0% | |
| ACCTCTGTGATACCCTTGGA+AGG | + | chr1_2:77023347-77023366 | None:intergenic | 50.0% | |
| AGCAACCTCTGTGATACCCT+TGG | + | chr1_2:77023351-77023370 | None:intergenic | 50.0% | |
| AGTAAAGCAAACGGGGAGGA+TGG | - | chr1_2:77024051-77024070 | Msa0093940:intron | 50.0% | |
| TAGGCACTTGCGAGACTCTT+TGG | - | chr1_2:77024811-77024830 | Msa0093940:intron | 50.0% | |
| AATATGCTTCACAGGCAGGC+TGG | - | chr1_2:77025224-77025243 | Msa0093940:intron | 50.0% | |
| GTGTGGTTCCTGTGGAACAA+AGG | - | chr1_2:77025281-77025300 | Msa0093940:intron | 50.0% | |
| GGAACAAAGGCTTCTTTGGG+TGG | - | chr1_2:77025294-77025313 | Msa0093940:CDS | 50.0% | |
| GCCCACACTGAAACATTGAG+CGG | - | chr1_2:77025435-77025454 | Msa0093940:intron | 50.0% | |
| GAATGCGTTGGACCCAAACT+AGG | - | chr1_2:77025457-77025476 | Msa0093940:intron | 50.0% | |
| ! | CGCAAAGCATCAAGGGTTTG+AGG | + | chr1_2:77025957-77025976 | None:intergenic | 50.0% |
| !! | TTGCGGTGCTGTGCTGGAAA+TGG | + | chr1_2:77022866-77022885 | None:intergenic | 55.0% |
| !! | GGGCTTTGAGAAGGGAAGGA+GGG | + | chr1_2:77023189-77023208 | None:intergenic | 55.0% |
| !! | TGTGGGGCTTTGAGAAGGGA+AGG | + | chr1_2:77023193-77023212 | None:intergenic | 55.0% |
| !! | GGAGATGTGGGGCTTTGAGA+AGG | + | chr1_2:77023198-77023217 | None:intergenic | 55.0% |
| GCGAAGAAGAAACCTCCTCG+AGG | + | chr1_2:77023325-77023344 | None:intergenic | 55.0% | |
| !! | GCCTTCCAAGGGTATCACAG+AGG | - | chr1_2:77023343-77023362 | Msa0093940:intron | 55.0% |
| !! | TGCAGCATTGATGGCACGTC+CGG | + | chr1_2:77023393-77023412 | None:intergenic | 55.0% |
| CGAGCGCGGCTATTTAGATC+AGG | - | chr1_2:77024412-77024431 | Msa0093940:intron | 55.0% | |
| CAGGGACAACCCACCATTGT+TGG | + | chr1_2:77024598-77024617 | None:intergenic | 55.0% | |
| ! | AGAAGAGGGGGTGCGGATTG+CGG | + | chr1_2:77022883-77022902 | None:intergenic | 60.0% |
| CTGGAAGAGAAGAGGGGGTG+CGG | + | chr1_2:77022890-77022909 | None:intergenic | 60.0% | |
| !! | GGGGCTTTGAGAAGGGAAGG+AGG | + | chr1_2:77023190-77023209 | None:intergenic | 60.0% |
| CACAGGCAGGCTGGAAGCTT+TGG | - | chr1_2:77025233-77025252 | Msa0093940:intron | 60.0% | |
| !! | TGCGGATTGCGGTGCTGTGC+TGG | + | chr1_2:77022872-77022891 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 77022792 | 77026994 | 77022792 | ID=Msa0093940;Name=Msa0093940 |
| chr1_2 | mRNA | 77022792 | 77026994 | 77022792 | ID=Msa0093940-mRNA-1;Parent=Msa0093940;Name=Msa0093940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=363|0.83|0.85|1|0.66|0.71|7|501|293 |
| chr1_2 | exon | 77022792 | 77023298 | 77022792 | ID=Msa0093940-mRNA-1:exon:27238;Parent=Msa0093940-mRNA-1 |
| chr1_2 | exon | 77023549 | 77023633 | 77023549 | ID=Msa0093940-mRNA-1:exon:27237;Parent=Msa0093940-mRNA-1 |
| chr1_2 | exon | 77024433 | 77024548 | 77024433 | ID=Msa0093940-mRNA-1:exon:27236;Parent=Msa0093940-mRNA-1 |
| chr1_2 | exon | 77025110 | 77025205 | 77025110 | ID=Msa0093940-mRNA-1:exon:27235;Parent=Msa0093940-mRNA-1 |
| chr1_2 | exon | 77025294 | 77025407 | 77025294 | ID=Msa0093940-mRNA-1:exon:27234;Parent=Msa0093940-mRNA-1 |
| chr1_2 | exon | 77025498 | 77025638 | 77025498 | ID=Msa0093940-mRNA-1:exon:27233;Parent=Msa0093940-mRNA-1 |
| chr1_2 | exon | 77026308 | 77026994 | 77026308 | ID=Msa0093940-mRNA-1:exon:27232;Parent=Msa0093940-mRNA-1 |
| chr1_2 | five_prime_UTR | 77026632 | 77026994 | 77026632 | ID=Msa0093940-mRNA-1:five_prime_utr;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77026308 | 77026631 | 77026308 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77025498 | 77025638 | 77025498 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77025294 | 77025407 | 77025294 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77025110 | 77025205 | 77025110 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77024433 | 77024548 | 77024433 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77023549 | 77023633 | 77023549 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | CDS | 77023293 | 77023298 | 77023293 | ID=Msa0093940-mRNA-1:cds;Parent=Msa0093940-mRNA-1 |
| chr1_2 | three_prime_UTR | 77022792 | 77023292 | 77022792 | ID=Msa0093940-mRNA-1:three_prime_utr;Parent=Msa0093940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
