Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226640 | XP_003597843.1 | 98.660 | 373 | 5 | 0 | 1 | 373 | 1 | 373 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226640 | G7IMH9 | 98.660 | 373 | 5 | 0 | 1 | 373 | 1 | 373 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094960 | Msa0226640 | 0.864484 | 1.176124e-64 | -8.615850e-47 |
| Msa0226640 | Msa0260250 | 0.862728 | 4.124725e-64 | -8.615850e-47 |
| Msa0226640 | Msa0260290 | 0.860603 | 1.840885e-63 | -8.615850e-47 |
| Msa0226640 | Msa0262470 | 0.800706 | 1.271112e-48 | -8.615850e-47 |
| Msa0226640 | Msa0300340 | 0.807174 | 5.750158e-50 | -8.615850e-47 |
| Msa0226640 | Msa0304250 | 0.876013 | 1.956816e-68 | -8.615850e-47 |
| Msa0226640 | Msa0337680 | 0.803230 | 3.848643e-49 | -8.615850e-47 |
| Msa0226640 | Msa0401060 | 0.803815 | 2.911774e-49 | -8.615850e-47 |
| Msa0226640 | Msa0550400 | 0.800731 | 1.256193e-48 | -8.615850e-47 |
| Msa0226640 | Msa0646590 | 0.800025 | 1.748722e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226640 | MtrunA17_Chr2g0332541 | 98.660 | 373 | 5 | 0 | 1 | 373 | 1 | 373 | 0.0 | 764 |
| Msa0226640 | MtrunA17_Chr1g0149051 | 68.661 | 351 | 104 | 2 | 20 | 369 | 31 | 376 | 0.0 | 508 |
| Msa0226640 | MtrunA17_Chr3g0089391 | 50.595 | 336 | 160 | 2 | 26 | 361 | 32 | 361 | 6.07e-119 | 349 |
| Msa0226640 | MtrunA17_Chr4g0019601 | 50.599 | 334 | 159 | 2 | 28 | 361 | 37 | 364 | 3.67e-115 | 339 |
| Msa0226640 | MtrunA17_Chr4g0019581 | 50.000 | 334 | 161 | 2 | 28 | 361 | 106 | 433 | 3.22e-114 | 339 |
| Msa0226640 | MtrunA17_Chr2g0286051 | 45.706 | 361 | 188 | 2 | 3 | 363 | 13 | 365 | 6.28e-113 | 334 |
| Msa0226640 | MtrunA17_Chr4g0019571 | 45.810 | 358 | 188 | 2 | 4 | 361 | 13 | 364 | 2.87e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226640 | AT5G11420.1 | 65.014 | 363 | 122 | 1 | 7 | 369 | 9 | 366 | 0.0 | 510 |
| Msa0226640 | AT5G25460.1 | 65.301 | 366 | 122 | 1 | 4 | 369 | 9 | 369 | 1.21e-180 | 506 |
| Msa0226640 | AT4G32460.2 | 64.865 | 370 | 124 | 2 | 1 | 369 | 1 | 365 | 2.57e-178 | 500 |
| Msa0226640 | AT4G32460.1 | 64.865 | 370 | 124 | 2 | 1 | 369 | 1 | 365 | 2.57e-178 | 500 |
| Msa0226640 | AT1G80240.1 | 66.570 | 344 | 110 | 1 | 23 | 366 | 27 | 365 | 2.35e-169 | 477 |
| Msa0226640 | AT4G32460.4 | 67.273 | 330 | 103 | 1 | 40 | 369 | 1 | 325 | 2.54e-165 | 465 |
| Msa0226640 | AT4G32460.3 | 67.273 | 330 | 103 | 1 | 40 | 369 | 1 | 325 | 2.54e-165 | 465 |
| Msa0226640 | AT3G08030.1 | 52.149 | 349 | 160 | 2 | 15 | 361 | 16 | 359 | 1.26e-122 | 358 |
| Msa0226640 | AT2G41800.1 | 48.611 | 360 | 173 | 2 | 15 | 367 | 16 | 370 | 1.27e-120 | 353 |
| Msa0226640 | AT2G41810.1 | 47.011 | 368 | 183 | 2 | 4 | 364 | 5 | 367 | 2.41e-118 | 348 |
| Msa0226640 | AT3G08030.2 | 53.106 | 322 | 146 | 1 | 40 | 361 | 1 | 317 | 2.14e-116 | 341 |
| Msa0226640 | AT2G34510.1 | 47.801 | 341 | 178 | 0 | 23 | 363 | 38 | 378 | 7.66e-113 | 335 |
| Msa0226640 | AT1G29980.1 | 44.928 | 345 | 186 | 1 | 23 | 363 | 38 | 382 | 3.72e-108 | 323 |
| Msa0226640 | AT1G29980.2 | 44.767 | 344 | 186 | 1 | 24 | 363 | 3 | 346 | 8.43e-108 | 321 |
| Msa0226640 | AT2G34510.2 | 47.945 | 292 | 152 | 0 | 72 | 363 | 1 | 292 | 1.59e-97 | 293 |
| Msa0226640 | AT5G14150.2 | 31.746 | 378 | 212 | 14 | 5 | 363 | 7 | 357 | 6.73e-43 | 154 |
| Msa0226640 | AT5G14150.1 | 31.746 | 378 | 212 | 14 | 5 | 363 | 7 | 357 | 6.73e-43 | 154 |
Find 94 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACCTTCACATGCATTAT+TGG | 0.192240 | 2_1:+77150552 | None:intergenic |
| CCCTTTAGGTTTGATGCTTT+TGG | 0.196530 | 2_1:+77151861 | None:intergenic |
| TCAAGTTCCTTATCAATCTA+AGG | 0.227907 | 2_1:-77150494 | Msa0226640:CDS |
| TTGTCACTACTGTGCCCTTT+AGG | 0.246643 | 2_1:+77151847 | None:intergenic |
| ATACCTAATTGGACTGTTTC+AGG | 0.262325 | 2_1:-77151813 | Msa0226640:CDS |
| TGGATAACAATTTCCCCTTC+TGG | 0.270997 | 2_1:+77151492 | None:intergenic |
| AAATTACCTCTGGTTCTTCT+AGG | 0.274083 | 2_1:+77151396 | None:intergenic |
| CCCATGATGCCATACCTAAT+TGG | 0.276893 | 2_1:-77151824 | Msa0226640:CDS |
| TATTGATTCTGTTGCCTTGA+AGG | 0.280632 | 2_1:-77151430 | Msa0226640:CDS |
| AAAACAAGGTGACATGCTTT+TGG | 0.342997 | 2_1:-77151763 | Msa0226640:CDS |
| ACTTCTGAGAAAAGAGATTA+TGG | 0.344578 | 2_1:-77151588 | Msa0226640:CDS |
| GGTAAAGGAGGGTTTGTTAG+AGG | 0.345986 | 2_1:-77150472 | Msa0226640:CDS |
| AATACTCCCCATGATGCATT+TGG | 0.357606 | 2_1:+77150787 | None:intergenic |
| ACCAGAGTTATCATTCTTCA+TGG | 0.360617 | 2_1:+77150387 | None:intergenic |
| TATCCTGAAACAGTCCAATT+AGG | 0.364032 | 2_1:+77151810 | None:intergenic |
| ATTACTTAGGTATGCTTGTT+GGG | 0.366782 | 2_1:+77150313 | None:intergenic |
| CAAGAAGTATTCACCACAAT+TGG | 0.369002 | 2_1:-77150610 | Msa0226640:CDS |
| CATTACTTAGGTATGCTTGT+TGG | 0.371408 | 2_1:+77150312 | None:intergenic |
| GATAACTCTGGTTCTCTTTG+TGG | 0.379593 | 2_1:-77150376 | Msa0226640:CDS |
| CTACCATACATAGTTTGTAT+AGG | 0.394483 | 2_1:+77151558 | None:intergenic |
| CCTTTACCCTTAGATTGATA+AGG | 0.394959 | 2_1:+77150487 | None:intergenic |
| TCCAATTAGGTATGGCATCA+TGG | 0.403469 | 2_1:+77151823 | None:intergenic |
| CATCTTCAACACCAGAGTTA+TGG | 0.410007 | 2_1:+77151472 | None:intergenic |
| CTAACAGCATAAGCACCTTC+TGG | 0.410744 | 2_1:+77151735 | None:intergenic |
| CAGAAGGTGCTTATGCTGTT+AGG | 0.416893 | 2_1:-77151734 | Msa0226640:CDS |
| GTTGGGAATCATTTGCTTGT+GGG | 0.420479 | 2_1:-77151530 | Msa0226640:CDS |
| CGACAAGACGTACTAGGATT+AGG | 0.425557 | 2_1:-77150429 | Msa0226640:CDS |
| TTTGATTTGCAACATTACTT+AGG | 0.436219 | 2_1:+77150300 | None:intergenic |
| CTTTCAGGTTTATTGCCAAA+TGG | 0.445556 | 2_1:-77151900 | Msa0226640:intron |
| TACGTTGAATACATAAAATC+AGG | 0.449032 | 2_1:-77151789 | Msa0226640:CDS |
| CCAACTTCAAAGTCACCATT+TGG | 0.454460 | 2_1:+77151885 | None:intergenic |
| TCATGGTGTAAAATGTACTT+AGG | 0.454825 | 2_1:+77150404 | None:intergenic |
| GATGCATTTGGGAACACATA+TGG | 0.455308 | 2_1:+77150799 | None:intergenic |
| AGGCTACGACAAGACGTACT+AGG | 0.457315 | 2_1:-77150435 | Msa0226640:CDS |
| TCAACTATCCATCCTGGTAA+TGG | 0.458492 | 2_1:+77150733 | None:intergenic |
| ATACTCCCCATGATGCATTT+GGG | 0.460441 | 2_1:+77150788 | None:intergenic |
| ATGACTGTAGAAGCATTTGC+TGG | 0.463295 | 2_1:-77150529 | Msa0226640:CDS |
| TACCTCTGGTTCTTCTAGGT+GGG | 0.470065 | 2_1:+77151400 | None:intergenic |
| AGAGCAATTGAACTTGTAGC+AGG | 0.483311 | 2_1:-77150652 | Msa0226640:CDS |
| ATTCCTATACAAACTATGTA+TGG | 0.484043 | 2_1:-77151561 | Msa0226640:CDS |
| CCAAAAGCATCAAACCTAAA+GGG | 0.488419 | 2_1:-77151861 | Msa0226640:CDS |
| GATGCTCATGGTCCATTACC+AGG | 0.489743 | 2_1:-77150745 | Msa0226640:CDS |
| TCAATAAGTGGGCCACAAGC+TGG | 0.490288 | 2_1:+77151447 | None:intergenic |
| CCAAATGGTGACTTTGAAGT+TGG | 0.493192 | 2_1:-77151885 | Msa0226640:CDS |
| ATGTGTTCCCAAATGCATCA+TGG | 0.495027 | 2_1:-77150795 | Msa0226640:CDS |
| TCCAAAAGCATCAAACCTAA+AGG | 0.497345 | 2_1:-77151862 | Msa0226640:CDS |
| TATGTATGGTAGCAATGGTT+GGG | 0.503190 | 2_1:-77151547 | Msa0226640:CDS |
| CCAATTAGGTATGGCATCAT+GGG | 0.506847 | 2_1:+77151824 | None:intergenic |
| AGGTGGGTTCAAAACCTTCA+AGG | 0.507765 | 2_1:+77151416 | None:intergenic |
| GGTTGGGAATCATTTGCTTG+TGG | 0.513196 | 2_1:-77151531 | Msa0226640:CDS |
| TGTGTTCCCAAATGCATCAT+GGG | 0.517111 | 2_1:-77150794 | Msa0226640:CDS |
| CCTTATCAATCTAAGGGTAA+AGG | 0.522665 | 2_1:-77150487 | Msa0226640:CDS |
| CTATGTATGGTAGCAATGGT+TGG | 0.523113 | 2_1:-77151548 | Msa0226640:CDS |
| CAAGTTCCTTATCAATCTAA+GGG | 0.527075 | 2_1:-77150493 | Msa0226640:CDS |
| ATTCTTGTAATAATATAGCT+AGG | 0.537601 | 2_1:-77150219 | Msa0226640:three_prime_UTR |
| TTACCTCTGGTTCTTCTAGG+TGG | 0.537982 | 2_1:+77151399 | None:intergenic |
| AGAGATTCAACTATCCATCC+TGG | 0.540762 | 2_1:+77150727 | None:intergenic |
| GAAATTGTTATCCATAACTC+TGG | 0.550258 | 2_1:-77151483 | Msa0226640:CDS |
| AAGGCAACAGAATCAATAAG+TGG | 0.552750 | 2_1:+77151435 | None:intergenic |
| ATACTCAACGAGATGGATGA+TGG | 0.558720 | 2_1:+77150263 | None:intergenic |
| TGAAACAGTCCAATTAGGTA+TGG | 0.559286 | 2_1:+77151815 | None:intergenic |
| TATCAATCTAAGGGTAAAGG+AGG | 0.563985 | 2_1:-77150484 | Msa0226640:CDS |
| AAAATGTAACAATGAGACAT+TGG | 0.564498 | 2_1:+77150054 | None:intergenic |
| CAAACTATGTATGGTAGCAA+TGG | 0.573939 | 2_1:-77151552 | Msa0226640:CDS |
| TTTAGAGCTGATTATCCAGA+AGG | 0.574156 | 2_1:-77151507 | Msa0226640:CDS |
| GGTGCTTATGCTGTTAGGCT+AGG | 0.577781 | 2_1:-77151729 | Msa0226640:CDS |
| CTGTATATGACAAAGCACCT+TGG | 0.580723 | 2_1:+77153665 | None:intergenic |
| CTCATGGTCCATTACCAGGA+TGG | 0.588455 | 2_1:-77150741 | Msa0226640:CDS |
| GTTGAAGATGATCCAGCTTG+TGG | 0.588645 | 2_1:-77151459 | Msa0226640:CDS |
| ATTGATCCCACCACACATTG+AGG | 0.605497 | 2_1:-77150767 | Msa0226640:CDS |
| TAGAGCTGATTATCCAGAAG+GGG | 0.606448 | 2_1:-77151505 | Msa0226640:CDS |
| ATCAATCTAAGGGTAAAGGA+GGG | 0.613771 | 2_1:-77150483 | Msa0226640:CDS |
| GAGCATCCTCAATGTGTGGT+GGG | 0.618690 | 2_1:+77150761 | None:intergenic |
| AGAGAAACTTAATGTGTCAG+TGG | 0.619664 | 2_1:-77151616 | Msa0226640:CDS |
| GAGCAATTGAACTTGTAGCA+GGG | 0.620186 | 2_1:-77150651 | Msa0226640:CDS |
| CCACACATTGAGGATGCTCA+TGG | 0.621467 | 2_1:-77150757 | Msa0226640:CDS |
| GGTGCTTTGTCATATACAGA+TGG | 0.625356 | 2_1:-77153661 | Msa0226640:intron |
| TTAGAGCTGATTATCCAGAA+GGG | 0.629847 | 2_1:-77151506 | Msa0226640:CDS |
| ATATTCCTCTCAATATGCCA+AGG | 0.634379 | 2_1:-77153682 | Msa0226640:CDS |
| GCGAGCTGCACTGAATGTGA+TGG | 0.634750 | 2_1:+77151653 | None:intergenic |
| AGGCAACAGAATCAATAAGT+GGG | 0.639484 | 2_1:+77151436 | None:intergenic |
| AAGCACCTTGGCATATTGAG+AGG | 0.644905 | 2_1:+77153677 | None:intergenic |
| TTCAATACGTGGCAATACTG+TGG | 0.645587 | 2_1:-77150099 | Msa0226640:three_prime_UTR |
| TGAGCATCCTCAATGTGTGG+TGG | 0.646759 | 2_1:+77150760 | None:intergenic |
| GAACACTTCACAGTACCAGA+AGG | 0.657571 | 2_1:-77150679 | Msa0226640:CDS |
| CATCACCAACTGCAAAAGTG+AGG | 0.662327 | 2_1:+77150575 | None:intergenic |
| CTTGTAATAATATAGCTAGG+AGG | 0.677897 | 2_1:-77150216 | Msa0226640:three_prime_UTR |
| GTGTTCCCAAATGCATCATG+GGG | 0.678543 | 2_1:-77150793 | Msa0226640:CDS |
| ATGTTGCAAATCAAAATGCA+TGG | 0.681924 | 2_1:-77150292 | Msa0226640:three_prime_UTR |
| ACCATGAAGAATGATAACTC+TGG | 0.691442 | 2_1:-77150388 | Msa0226640:CDS |
| CCATGAGCATCCTCAATGTG+TGG | 0.691876 | 2_1:+77150757 | None:intergenic |
| AACCCACCTAGAAGAACCAG+AGG | 0.693541 | 2_1:-77151402 | Msa0226640:intron |
| ATGAGAAGTATTTCAATACG+TGG | 0.697286 | 2_1:-77150110 | Msa0226640:three_prime_UTR |
| GATGCCAATAATGCATGTGA+AGG | 0.699161 | 2_1:-77150556 | Msa0226640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAAAAAAAAATTACAT+TGG | + | chr2_1:77150211-77150230 | None:intergenic | 10.0% |
| !!! | CAATGTAATTTTTTTTTTTA+AGG | - | chr2_1:77150209-77150228 | Msa0226640:three_prime_UTR | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | + | chr2_1:77150624-77150643 | None:intergenic | 10.0% |
| !!! | AATGTTATTATTTATTTTAG+AGG | - | chr2_1:77150998-77151017 | Msa0226640:intron | 10.0% |
| !!! | TTTTTATTTTTGTTTTTTTC+AGG | + | chr2_1:77151203-77151222 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTACAAATAAAT+AGG | + | chr2_1:77151413-77151432 | None:intergenic | 10.0% |
| !! | CATAAATTGAAAAACATTAA+GGG | + | chr2_1:77150424-77150443 | None:intergenic | 15.0% |
| !! | ACATAAATTGAAAAACATTA+AGG | + | chr2_1:77150425-77150444 | None:intergenic | 15.0% |
| !! | AAACTAATCAATAGTTAATA+AGG | - | chr2_1:77150638-77150657 | Msa0226640:CDS | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr2_1:77150647-77150666 | Msa0226640:CDS | 15.0% |
| !!! | TATTGAATGTAAAGTTATTT+TGG | + | chr2_1:77150842-77150861 | None:intergenic | 15.0% |
| !! | TAATTTATTTAGATATTCGT+AGG | - | chr2_1:77151137-77151156 | Msa0226640:intron | 15.0% |
| !! | AATTTATTTAGATATTCGTA+GGG | - | chr2_1:77151138-77151157 | Msa0226640:intron | 15.0% |
| !!! | CAACTTTTATTTATATATCT+AGG | - | chr2_1:77151731-77151750 | Msa0226640:CDS | 15.0% |
| !!! | TATATTTTCCACAAAAAAAA+AGG | + | chr2_1:77151770-77151789 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTGGAAAATAT+AGG | - | chr2_1:77151769-77151788 | Msa0226640:CDS | 15.0% |
| !!! | GAAAGAATTTTAAATTGATA+AGG | + | chr2_1:77151905-77151924 | None:intergenic | 15.0% |
| !!! | TATCAATTTAAAATTCTTTC+AGG | - | chr2_1:77151905-77151924 | Msa0226640:intron | 15.0% |
| !! | ACAAAAATATTCAATCATAT+TGG | + | chr2_1:77152838-77152857 | None:intergenic | 15.0% |
| !! | TTGATGTATGAAATTAAATT+TGG | - | chr2_1:77152925-77152944 | Msa0226640:intron | 15.0% |
| !!! | AATTATTGTTTTTGTTTGTT+TGG | - | chr2_1:77152958-77152977 | Msa0226640:intron | 15.0% |
| !!! | CTTTTAAGTAAGTAAACATT+TGG | + | chr2_1:77150349-77150368 | None:intergenic | 20.0% |
| !! | ACTTAAAAGTTTAACATTGA+TGG | - | chr2_1:77150360-77150379 | Msa0226640:CDS | 20.0% |
| !!! | TTGATCATATATTTTGTGTT+TGG | - | chr2_1:77150455-77150474 | Msa0226640:CDS | 20.0% |
| !! | AAAAGAAAAAGTTATTGCAT+TGG | + | chr2_1:77150564-77150583 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr2_1:77150681-77150700 | None:intergenic | 20.0% |
| !! | TGTATATTGCATAAATAAAC+AGG | + | chr2_1:77151117-77151136 | None:intergenic | 20.0% |
| !!! | TATGTATACCTTTTTTTTTG+TGG | - | chr2_1:77151759-77151778 | Msa0226640:CDS | 20.0% |
| !!! | AGAAAAATTTTCCTATCATA+AGG | - | chr2_1:77151806-77151825 | Msa0226640:CDS | 20.0% |
| !! | AAAAAGTGAAGCTTAATAAA+GGG | - | chr2_1:77152134-77152153 | Msa0226640:intron | 20.0% |
| !! | TGTATACAAATTTAGATACA+TGG | + | chr2_1:77152475-77152494 | None:intergenic | 20.0% |
| !! | TAGTAAAATACAATTAAGCT+AGG | + | chr2_1:77152528-77152547 | None:intergenic | 20.0% |
| !! | ATTCTTAATTTAATGCAAAG+AGG | - | chr2_1:77152892-77152911 | Msa0226640:intron | 20.0% |
| !!! | GTTTCCATTTTTCAATAAAT+TGG | + | chr2_1:77152989-77153008 | None:intergenic | 20.0% |
| !!! | AATTTTACATCATCAATAAC+AGG | + | chr2_1:77153471-77153490 | None:intergenic | 20.0% |
| !! | ATTCTTGTAATAATATAGCT+AGG | - | chr2_1:77153601-77153620 | Msa0226640:intron | 20.0% |
| ! | ATTACATTGGATATAGTGTT+GGG | + | chr2_1:77150198-77150217 | None:intergenic | 25.0% |
| ! | AATTACATTGGATATAGTGT+TGG | + | chr2_1:77150199-77150218 | None:intergenic | 25.0% |
| ! | CTAATAATCACAGTACATAA+AGG | + | chr2_1:77150288-77150307 | None:intergenic | 25.0% |
| ! | CTTTATGTACTGTGATTATT+AGG | - | chr2_1:77150286-77150305 | Msa0226640:three_prime_UTR | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | - | chr2_1:77150730-77150749 | Msa0226640:CDS | 25.0% |
| ! | GTGTATAATAGTACTTAATC+TGG | + | chr2_1:77151384-77151403 | None:intergenic | 25.0% |
| ! | TTGATACCAAAGTAACAAAA+AGG | - | chr2_1:77151471-77151490 | Msa0226640:CDS | 25.0% |
| !!! | TATTGTCCTTTTTGTTACTT+TGG | + | chr2_1:77151480-77151499 | None:intergenic | 25.0% |
| ! | AATTGTTTGAACCTTATGAT+AGG | + | chr2_1:77151820-77151839 | None:intergenic | 25.0% |
| ! | TACGTTGAATACATAAAATC+AGG | - | chr2_1:77152031-77152050 | Msa0226640:intron | 25.0% |
| ! | ATAAAATCAGGACAAAAACA+AGG | - | chr2_1:77152043-77152062 | Msa0226640:intron | 25.0% |
| ! | CAAAAAGTGAAGCTTAATAA+AGG | - | chr2_1:77152133-77152152 | Msa0226640:intron | 25.0% |
| ! | ATTCCTATACAAACTATGTA+TGG | - | chr2_1:77152259-77152278 | Msa0226640:intron | 25.0% |
| ! | GCATATATTTATGATGTGTT+TGG | - | chr2_1:77152692-77152711 | Msa0226640:intron | 25.0% |
| ! | ACTCCATACATGTAATTAAA+CGG | - | chr2_1:77152811-77152830 | Msa0226640:intron | 25.0% |
| !! | AAAAATGGAAACTTTGAAGA+AGG | - | chr2_1:77152997-77153016 | Msa0226640:intron | 25.0% |
| !!! | TTTGATTTGCAACATTACTT+AGG | + | chr2_1:77153523-77153542 | None:intergenic | 25.0% |
| ! | AATAAAAATACTCAACGAGA+TGG | + | chr2_1:77153567-77153586 | None:intergenic | 25.0% |
| AGGAACTATATGCAATGTAA+TGG | - | chr2_1:77150229-77150248 | Msa0226640:three_prime_UTR | 30.0% | |
| ATATGCAATGTAATGGTGTT+TGG | - | chr2_1:77150236-77150255 | Msa0226640:three_prime_UTR | 30.0% | |
| TGAAGTACAACAATGAAGAA+AGG | + | chr2_1:77150386-77150405 | None:intergenic | 30.0% | |
| !! | AAGCGACACTCATTTTAAAA+CGG | + | chr2_1:77150499-77150518 | None:intergenic | 30.0% |
| ! | TGTTCAGAGTATTAATTGGA+GGG | + | chr2_1:77150595-77150614 | None:intergenic | 30.0% |
| ! | GTAGTGTTCAGAGTATTAAT+TGG | + | chr2_1:77150599-77150618 | None:intergenic | 30.0% |
| GATACATTTGTAGTATCATG+GGG | + | chr2_1:77151179-77151198 | None:intergenic | 30.0% | |
| CGATACATTTGTAGTATCAT+GGG | + | chr2_1:77151180-77151199 | None:intergenic | 30.0% | |
| CAAGTCAAACAACATAAGAA+CGG | + | chr2_1:77151454-77151473 | None:intergenic | 30.0% | |
| AAATGTGATGTGAGAATATC+AGG | - | chr2_1:77151503-77151522 | Msa0226640:CDS | 30.0% | |
| GAACTAGAACAATATAGCAT+TGG | - | chr2_1:77151594-77151613 | Msa0226640:CDS | 30.0% | |
| !!! | TCTTTTTCAAGAGCACTTTT+TGG | + | chr2_1:77151706-77151725 | None:intergenic | 30.0% |
| ! | TAATCTCTTTTCTCAGAAGT+TGG | + | chr2_1:77152232-77152251 | None:intergenic | 30.0% |
| ! | ACTTCTGAGAAAAGAGATTA+TGG | - | chr2_1:77152232-77152251 | Msa0226640:intron | 30.0% |
| ! | CTACCATACATAGTTTGTAT+AGG | + | chr2_1:77152265-77152284 | None:intergenic | 30.0% |
| GAAATTGTTATCCATAACTC+TGG | - | chr2_1:77152337-77152356 | Msa0226640:intron | 30.0% | |
| ! | TGGACATGTACTTTTATGTA+GGG | + | chr2_1:77152455-77152474 | None:intergenic | 30.0% |
| ! | ATGGACATGTACTTTTATGT+AGG | + | chr2_1:77152456-77152475 | None:intergenic | 30.0% |
| TTATGATGTGTTTGGATTGA+CGG | - | chr2_1:77152700-77152719 | Msa0226640:intron | 30.0% | |
| ! | GTTAATGTGATTTTCGCAAT+TGG | - | chr2_1:77152746-77152765 | Msa0226640:intron | 30.0% |
| GCAGCCAATTTATTGAAAAA+TGG | - | chr2_1:77152982-77153001 | Msa0226640:intron | 30.0% | |
| ! | GACATAAACTTTTCCAATTG+TGG | + | chr2_1:77153226-77153245 | None:intergenic | 30.0% |
| TCAAGTTCCTTATCAATCTA+AGG | - | chr2_1:77153326-77153345 | Msa0226640:intron | 30.0% | |
| CAAGTTCCTTATCAATCTAA+GGG | - | chr2_1:77153327-77153346 | Msa0226640:intron | 30.0% | |
| TCATGGTGTAAAATGTACTT+AGG | + | chr2_1:77153419-77153438 | None:intergenic | 30.0% | |
| ATTACTTAGGTATGCTTGTT+GGG | + | chr2_1:77153510-77153529 | None:intergenic | 30.0% | |
| ATGTTGCAAATCAAAATGCA+TGG | - | chr2_1:77153528-77153547 | Msa0226640:intron | 30.0% | |
| CTTGTAATAATATAGCTAGG+AGG | - | chr2_1:77153604-77153623 | Msa0226640:intron | 30.0% | |
| !! | ATGAGAAGTATTTCAATACG+TGG | - | chr2_1:77153710-77153729 | Msa0226640:CDS | 30.0% |
| ATATTCCTCTCAATATGCCA+AGG | - | chr2_1:77150138-77150157 | Msa0226640:three_prime_UTR | 35.0% | |
| !!! | GACACTCATTTTAAAACGGA+GGG | + | chr2_1:77150734-77150753 | None:intergenic | 35.0% |
| ! | GTGTTCAGAGTATTAATTGG+AGG | + | chr2_1:77150596-77150615 | None:intergenic | 35.0% |
| !!! | GACACTCATTTTAAAACGGA+TGG | - | chr2_1:77150734-77150753 | Msa0226640:CDS | 35.0% |
| GCGATACATTTGTAGTATCA+TGG | + | chr2_1:77151181-77151200 | None:intergenic | 35.0% | |
| !! | GTTCTAGAATCTAGATCTCT+AGG | + | chr2_1:77151578-77151597 | None:intergenic | 35.0% |
| CTAACATGTTCCTTATCACA+TGG | - | chr2_1:77151670-77151689 | Msa0226640:CDS | 35.0% | |
| TGTGGAAAATATAGGTCTCA+TGG | - | chr2_1:77151777-77151796 | Msa0226640:CDS | 35.0% | |
| GTGGAAAATATAGGTCTCAT+GGG | - | chr2_1:77151778-77151797 | Msa0226640:CDS | 35.0% | |
| TGGAAAATATAGGTCTCATG+GGG | - | chr2_1:77151779-77151798 | Msa0226640:CDS | 35.0% | |
| !! | CTTTCAGGTTTATTGCCAAA+TGG | - | chr2_1:77151920-77151939 | Msa0226640:intron | 35.0% |
| !! | TCCAAAAGCATCAAACCTAA+AGG | - | chr2_1:77151958-77151977 | Msa0226640:intron | 35.0% |
| !! | CCAAAAGCATCAAACCTAAA+GGG | - | chr2_1:77151959-77151978 | Msa0226640:intron | 35.0% |
| TGAAACAGTCCAATTAGGTA+TGG | + | chr2_1:77152008-77152027 | None:intergenic | 35.0% | |
| ATACCTAATTGGACTGTTTC+AGG | - | chr2_1:77152007-77152026 | Msa0226640:intron | 35.0% | |
| TATCCTGAAACAGTCCAATT+AGG | + | chr2_1:77152013-77152032 | None:intergenic | 35.0% | |
| ! | AAAACAAGGTGACATGCTTT+TGG | - | chr2_1:77152057-77152076 | Msa0226640:intron | 35.0% |
| AGAGAAACTTAATGTGTCAG+TGG | - | chr2_1:77152204-77152223 | Msa0226640:intron | 35.0% | |
| CAAACTATGTATGGTAGCAA+TGG | - | chr2_1:77152268-77152287 | Msa0226640:intron | 35.0% | |
| TATGTATGGTAGCAATGGTT+GGG | - | chr2_1:77152273-77152292 | Msa0226640:intron | 35.0% | |
| ! | TTTAGAGCTGATTATCCAGA+AGG | - | chr2_1:77152313-77152332 | Msa0226640:intron | 35.0% |
| TTAGAGCTGATTATCCAGAA+GGG | - | chr2_1:77152314-77152333 | Msa0226640:intron | 35.0% | |
| AGGCAACAGAATCAATAAGT+GGG | + | chr2_1:77152387-77152406 | None:intergenic | 35.0% | |
| AAGGCAACAGAATCAATAAG+TGG | + | chr2_1:77152388-77152407 | None:intergenic | 35.0% | |
| !! | TATTGATTCTGTTGCCTTGA+AGG | - | chr2_1:77152390-77152409 | Msa0226640:intron | 35.0% |
| !! | AAATTACCTCTGGTTCTTCT+AGG | + | chr2_1:77152427-77152446 | None:intergenic | 35.0% |
| TAGGGAACAAAAATTACCTC+TGG | + | chr2_1:77152437-77152456 | None:intergenic | 35.0% | |
| GGACCGTTTAATTACATGTA+TGG | + | chr2_1:77152817-77152836 | None:intergenic | 35.0% | |
| ! | TCAATTGCTCTTTTTCCTTC+TGG | + | chr2_1:77153159-77153178 | None:intergenic | 35.0% |
| !! | CAAGAAGTATTCACCACAAT+TGG | - | chr2_1:77153210-77153229 | Msa0226640:intron | 35.0% |
| AGAACCTTCACATGCATTAT+TGG | + | chr2_1:77153271-77153290 | None:intergenic | 35.0% | |
| CCTTTACCCTTAGATTGATA+AGG | + | chr2_1:77153336-77153355 | None:intergenic | 35.0% | |
| CCTTATCAATCTAAGGGTAA+AGG | - | chr2_1:77153333-77153352 | Msa0226640:intron | 35.0% | |
| TATCAATCTAAGGGTAAAGG+AGG | - | chr2_1:77153336-77153355 | Msa0226640:intron | 35.0% | |
| ATCAATCTAAGGGTAAAGGA+GGG | - | chr2_1:77153337-77153356 | Msa0226640:intron | 35.0% | |
| ! | TAGAGGCAAACTTCGTTTTA+AGG | - | chr2_1:77153365-77153384 | Msa0226640:intron | 35.0% |
| ACCATGAAGAATGATAACTC+TGG | - | chr2_1:77153432-77153451 | Msa0226640:intron | 35.0% | |
| ACCAGAGTTATCATTCTTCA+TGG | + | chr2_1:77153436-77153455 | None:intergenic | 35.0% | |
| CATTACTTAGGTATGCTTGT+TGG | + | chr2_1:77153511-77153530 | None:intergenic | 35.0% | |
| ! | CTGTATATGACAAAGCACCT+TGG | + | chr2_1:77150158-77150177 | None:intergenic | 40.0% |
| GGTGCTTTGTCATATACAGA+TGG | - | chr2_1:77150159-77150178 | Msa0226640:three_prime_UTR | 40.0% | |
| !!! | CGACACTCATTTTAAAACGG+AGG | + | chr2_1:77150733-77150752 | None:intergenic | 40.0% |
| !! | GTTCTAGAGTTCAAAGCTCT+TGG | + | chr2_1:77150767-77150786 | None:intergenic | 40.0% |
| ATCCCTTTCGTCAGATCTTA+AGG | - | chr2_1:77151299-77151318 | Msa0226640:intron | 40.0% | |
| TGCCTTAAGATCTGACGAAA+GGG | + | chr2_1:77151304-77151323 | None:intergenic | 40.0% | |
| GCATTGGAAATCTCTTCACA+TGG | - | chr2_1:77151610-77151629 | Msa0226640:CDS | 40.0% | |
| TCTCTTCACATGGCTTACAA+AGG | - | chr2_1:77151620-77151639 | Msa0226640:CDS | 40.0% | |
| AGGAACATGTTAGTAAGTGC+AGG | + | chr2_1:77151663-77151682 | None:intergenic | 40.0% | |
| ACATGTTCCTTATCACATGG+TGG | - | chr2_1:77151673-77151692 | Msa0226640:CDS | 40.0% | |
| TCTTGTTCCACCATGTGATA+AGG | + | chr2_1:77151683-77151702 | None:intergenic | 40.0% | |
| CCAACTTCAAAGTCACCATT+TGG | + | chr2_1:77151938-77151957 | None:intergenic | 40.0% | |
| !! | CCAAATGGTGACTTTGAAGT+TGG | - | chr2_1:77151935-77151954 | Msa0226640:intron | 40.0% |
| !! | CCCTTTAGGTTTGATGCTTT+TGG | + | chr2_1:77151962-77151981 | None:intergenic | 40.0% |
| CCAATTAGGTATGGCATCAT+GGG | + | chr2_1:77151999-77152018 | None:intergenic | 40.0% | |
| TCCAATTAGGTATGGCATCA+TGG | + | chr2_1:77152000-77152019 | None:intergenic | 40.0% | |
| !! | ATGCTTTTGGTTGTACCAGA+AGG | - | chr2_1:77152070-77152089 | Msa0226640:intron | 40.0% |
| CTATGTATGGTAGCAATGGT+TGG | - | chr2_1:77152272-77152291 | Msa0226640:intron | 40.0% | |
| GTTGGGAATCATTTGCTTGT+GGG | - | chr2_1:77152290-77152309 | Msa0226640:intron | 40.0% | |
| TAGAGCTGATTATCCAGAAG+GGG | - | chr2_1:77152315-77152334 | Msa0226640:intron | 40.0% | |
| TGGATAACAATTTCCCCTTC+TGG | + | chr2_1:77152331-77152350 | None:intergenic | 40.0% | |
| CATCTTCAACACCAGAGTTA+TGG | + | chr2_1:77152351-77152370 | None:intergenic | 40.0% | |
| GATGCATTTGGGAACACATA+TGG | + | chr2_1:77153024-77153043 | None:intergenic | 40.0% | |
| ATGTGTTCCCAAATGCATCA+TGG | - | chr2_1:77153025-77153044 | Msa0226640:intron | 40.0% | |
| TGTGTTCCCAAATGCATCAT+GGG | - | chr2_1:77153026-77153045 | Msa0226640:intron | 40.0% | |
| ATACTCCCCATGATGCATTT+GGG | + | chr2_1:77153035-77153054 | None:intergenic | 40.0% | |
| AATACTCCCCATGATGCATT+TGG | + | chr2_1:77153036-77153055 | None:intergenic | 40.0% | |
| TCAACTATCCATCCTGGTAA+TGG | + | chr2_1:77153090-77153109 | None:intergenic | 40.0% | |
| AGAGATTCAACTATCCATCC+TGG | + | chr2_1:77153096-77153115 | None:intergenic | 40.0% | |
| AGAGCAATTGAACTTGTAGC+AGG | - | chr2_1:77153168-77153187 | Msa0226640:intron | 40.0% | |
| GAGCAATTGAACTTGTAGCA+GGG | - | chr2_1:77153169-77153188 | Msa0226640:intron | 40.0% | |
| !! | TATGTCCTCACTTTTGCAGT+TGG | - | chr2_1:77153240-77153259 | Msa0226640:intron | 40.0% |
| GATGCCAATAATGCATGTGA+AGG | - | chr2_1:77153264-77153283 | Msa0226640:intron | 40.0% | |
| !! | ATGACTGTAGAAGCATTTGC+TGG | - | chr2_1:77153291-77153310 | Msa0226640:intron | 40.0% |
| !! | GATAACTCTGGTTCTCTTTG+TGG | - | chr2_1:77153444-77153463 | Msa0226640:intron | 40.0% |
| ATACTCAACGAGATGGATGA+TGG | + | chr2_1:77153560-77153579 | None:intergenic | 40.0% | |
| TTCAATACGTGGCAATACTG+TGG | - | chr2_1:77153721-77153740 | Msa0226640:exon | 40.0% | |
| AAGCACCTTGGCATATTGAG+AGG | + | chr2_1:77150146-77150165 | None:intergenic | 45.0% | |
| ATCTGACGAAAGGGATGTTG+TGG | + | chr2_1:77151295-77151314 | None:intergenic | 45.0% | |
| GTGCCTTAAGATCTGACGAA+AGG | + | chr2_1:77151305-77151324 | None:intergenic | 45.0% | |
| TGTTAGTAAGTGCAGGCTGT+GGG | + | chr2_1:77151656-77151675 | None:intergenic | 45.0% | |
| ATGTTAGTAAGTGCAGGCTG+TGG | + | chr2_1:77151657-77151676 | None:intergenic | 45.0% | |
| TTGTCACTACTGTGCCCTTT+AGG | + | chr2_1:77151976-77151995 | None:intergenic | 45.0% | |
| CCCATGATGCCATACCTAAT+TGG | - | chr2_1:77151996-77152015 | Msa0226640:intron | 45.0% | |
| CTAACAGCATAAGCACCTTC+TGG | + | chr2_1:77152088-77152107 | None:intergenic | 45.0% | |
| !! | CAGAAGGTGCTTATGCTGTT+AGG | - | chr2_1:77152086-77152105 | Msa0226640:intron | 45.0% |
| GGTTGGGAATCATTTGCTTG+TGG | - | chr2_1:77152289-77152308 | Msa0226640:intron | 45.0% | |
| GTTGAAGATGATCCAGCTTG+TGG | - | chr2_1:77152361-77152380 | Msa0226640:intron | 45.0% | |
| ! | AGGTGGGTTCAAAACCTTCA+AGG | + | chr2_1:77152407-77152426 | None:intergenic | 45.0% |
| !! | TACCTCTGGTTCTTCTAGGT+GGG | + | chr2_1:77152423-77152442 | None:intergenic | 45.0% |
| !! | TTACCTCTGGTTCTTCTAGG+TGG | + | chr2_1:77152424-77152443 | None:intergenic | 45.0% |
| GTGTTCCCAAATGCATCATG+GGG | - | chr2_1:77153027-77153046 | Msa0226640:intron | 45.0% | |
| ATTGATCCCACCACACATTG+AGG | - | chr2_1:77153053-77153072 | Msa0226640:intron | 45.0% | |
| GAACACTTCACAGTACCAGA+AGG | - | chr2_1:77153141-77153160 | Msa0226640:intron | 45.0% | |
| CATCACCAACTGCAAAAGTG+AGG | + | chr2_1:77153248-77153267 | None:intergenic | 45.0% | |
| !! | GGTAAAGGAGGGTTTGTTAG+AGG | - | chr2_1:77153348-77153367 | Msa0226640:intron | 45.0% |
| CGACAAGACGTACTAGGATT+AGG | - | chr2_1:77153391-77153410 | Msa0226640:intron | 45.0% | |
| GGTGCTTATGCTGTTAGGCT+AGG | - | chr2_1:77152091-77152110 | Msa0226640:intron | 50.0% | |
| TCAATAAGTGGGCCACAAGC+TGG | + | chr2_1:77152376-77152395 | None:intergenic | 50.0% | |
| AACCCACCTAGAAGAACCAG+AGG | - | chr2_1:77152418-77152437 | Msa0226640:intron | 50.0% | |
| GAGCATCCTCAATGTGTGGT+GGG | + | chr2_1:77153062-77153081 | None:intergenic | 50.0% | |
| TGAGCATCCTCAATGTGTGG+TGG | + | chr2_1:77153063-77153082 | None:intergenic | 50.0% | |
| CCATGAGCATCCTCAATGTG+TGG | + | chr2_1:77153066-77153085 | None:intergenic | 50.0% | |
| CCACACATTGAGGATGCTCA+TGG | - | chr2_1:77153063-77153082 | Msa0226640:intron | 50.0% | |
| GATGCTCATGGTCCATTACC+AGG | - | chr2_1:77153075-77153094 | Msa0226640:intron | 50.0% | |
| CTCATGGTCCATTACCAGGA+TGG | - | chr2_1:77153079-77153098 | Msa0226640:intron | 50.0% | |
| AGGCTACGACAAGACGTACT+AGG | - | chr2_1:77153385-77153404 | Msa0226640:intron | 50.0% | |
| GCGAGCTGCACTGAATGTGA+TGG | + | chr2_1:77152170-77152189 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 77150060 | 77153782 | 77150060 | ID=Msa0226640;Name=Msa0226640 |
| chr2_1 | mRNA | 77150060 | 77153782 | 77150060 | ID=Msa0226640-mRNA-1;Parent=Msa0226640;Name=Msa0226640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|0.5|0.66|3|258|373 |
| chr2_1 | exon | 77150060 | 77150856 | 77150060 | ID=Msa0226640-mRNA-1:exon:23385;Parent=Msa0226640-mRNA-1 |
| chr2_1 | exon | 77151403 | 77151915 | 77151403 | ID=Msa0226640-mRNA-1:exon:23384;Parent=Msa0226640-mRNA-1 |
| chr2_1 | exon | 77153662 | 77153782 | 77153662 | ID=Msa0226640-mRNA-1:exon:23383;Parent=Msa0226640-mRNA-1 |
| chr2_1 | five_prime_UTR | 77153732 | 77153782 | 77153732 | ID=Msa0226640-mRNA-1:five_prime_utr;Parent=Msa0226640-mRNA-1 |
| chr2_1 | CDS | 77153662 | 77153731 | 77153662 | ID=Msa0226640-mRNA-1:cds;Parent=Msa0226640-mRNA-1 |
| chr2_1 | CDS | 77151403 | 77151915 | 77151403 | ID=Msa0226640-mRNA-1:cds;Parent=Msa0226640-mRNA-1 |
| chr2_1 | CDS | 77150318 | 77150856 | 77150318 | ID=Msa0226640-mRNA-1:cds;Parent=Msa0226640-mRNA-1 |
| chr2_1 | three_prime_UTR | 77150060 | 77150317 | 77150060 | ID=Msa0226640-mRNA-1:three_prime_utr;Parent=Msa0226640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
