Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264410 | XP_024631934.2 | 89.712 | 243 | 5 | 2 | 1 | 223 | 1 | 243 | 1.45e-151 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264410 | sp|Q9LM93|DPM1_ARATH | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.74e-137 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264410 | A0A396IBZ2 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 9.05e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223200 | Msa0264410 | 0.894048 | 3.554389e-75 | -8.615850e-47 |
| Msa0264410 | Msa0302300 | 0.912796 | 1.290801e-83 | -8.615850e-47 |
| Msa0264410 | Msa0339660 | 0.927777 | 7.321408e-92 | -8.615850e-47 |
| Msa0264410 | Msa1427190 | 0.884127 | 2.499174e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264410 | MtrunA17_Chr4g0046071 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 1.74e-152 | 423 |
| Msa0264410 | MtrunA17_Chr2g0328281 | 82.456 | 228 | 30 | 2 | 3 | 223 | 13 | 237 | 6.60e-134 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264410 | AT1G20575.1 | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.80e-138 | 387 |
Find 68 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAGTTGCTCACTGTTTC+CGG | 0.175480 | 2_2:+64374764 | None:intergenic |
| TCGTTCTTTGTAGACTTTAT+AGG | 0.189170 | 2_2:-64373071 | Msa0264410:intron |
| ATGAAGCCTGGCAAATATTT+TGG | 0.190219 | 2_2:+64373421 | None:intergenic |
| GAAGATATACCAGGCCTTTC+AGG | 0.213828 | 2_2:+64372138 | None:intergenic |
| CCAATTTCAGATTAAAATAA+TGG | 0.221772 | 2_2:-64374646 | Msa0264410:intron |
| ACGGAAGGTGTTTGAAAATA+AGG | 0.231492 | 2_2:+64374538 | None:intergenic |
| GAGCAGTTGCATTTCCATTT+AGG | 0.258096 | 2_2:+64371793 | None:intergenic |
| CATAATGACAACAAAATTTC+CGG | 0.304728 | 2_2:+64373655 | None:intergenic |
| TAGGAAGAGTCGCATATTAA+TGG | 0.310873 | 2_2:+64371812 | None:intergenic |
| AATATGCGACTCTTCCTAAA+TGG | 0.322673 | 2_2:-64371807 | Msa0264410:three_prime_UTR |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | 2_2:-64372197 | Msa0264410:CDS |
| AATATTTGCCAGGCTTCATT+AGG | 0.338833 | 2_2:-64373417 | Msa0264410:intron |
| CAAACTATGCAGATTCTATC+AGG | 0.349018 | 2_2:+64372011 | None:intergenic |
| ACTGGTGCTGATATAGTTAC+AGG | 0.361148 | 2_2:-64373304 | Msa0264410:CDS |
| ACAGGGACTCGGTATGTTAA+AGG | 0.371437 | 2_2:-64373286 | Msa0264410:CDS |
| TTCAGAAAGCAGTTGGAAAC+TGG | 0.371824 | 2_2:-64373322 | Msa0264410:intron |
| ATGCTTCATGCCATGAATAT+AGG | 0.378458 | 2_2:+64373682 | None:intergenic |
| GTAGGTACGGCCTATATTCA+TGG | 0.398632 | 2_2:-64373692 | Msa0264410:intron |
| AGACCTAGGAAGATGGGTTT+AGG | 0.404208 | 2_2:-64373781 | Msa0264410:intron |
| AACTTGTGTCCTCAATAATC+AGG | 0.426075 | 2_2:+64372036 | None:intergenic |
| TATATGGAAGTTCAAAGCTT+GGG | 0.426124 | 2_2:-64372181 | Msa0264410:CDS |
| TAAAGGATATGTCTTTCAAA+TGG | 0.429662 | 2_2:-64373010 | Msa0264410:CDS |
| TGTTGTAAAACAATTGCAAC+AGG | 0.432571 | 2_2:-64374249 | Msa0264410:intron |
| AACTCGCCGGAGTTAGTTAT+CGG | 0.450823 | 2_2:-64374790 | Msa0264410:five_prime_UTR |
| GAAACCGCACCTCTTTGATA+TGG | 0.453561 | 2_2:+64372956 | None:intergenic |
| CTGCAGCCAAAATATTTGCC+AGG | 0.467710 | 2_2:-64373427 | Msa0264410:intron |
| CCCGGTGTCTCAGATTTGAC+AGG | 0.469407 | 2_2:-64373184 | Msa0264410:CDS |
| TTGAGTCGTTCATTATATGT+AGG | 0.474173 | 2_2:+64374579 | None:intergenic |
| CCCTGTCAAATCTGAGACAC+CGG | 0.478872 | 2_2:+64373183 | None:intergenic |
| ATAGTACGAGCATCCAGAAA+AGG | 0.481126 | 2_2:-64372982 | Msa0264410:CDS |
| ATTAGTTGCTGTGTTAGTAA+AGG | 0.488144 | 2_2:-64373027 | Msa0264410:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | 2_2:+64372203 | None:intergenic |
| ACACCTAAACCCATCTTCCT+AGG | 0.493673 | 2_2:+64373778 | None:intergenic |
| TAATGCGCAAACTAACAAGT+AGG | 0.495530 | 2_2:-64373240 | Msa0264410:CDS |
| GTTCAGTAACCTGATTATTG+AGG | 0.497826 | 2_2:-64372045 | Msa0264410:three_prime_UTR |
| CATGGCATGAAGCATGCGTC+CGG | 0.503198 | 2_2:-64373674 | Msa0264410:CDS |
| AAGAGCAAGACCTAGGAAGA+TGG | 0.504382 | 2_2:-64373788 | Msa0264410:CDS |
| GTTAAAGGCGGTGGTGTACA+TGG | 0.509663 | 2_2:-64373271 | Msa0264410:CDS |
| ACAACATCTTGAGTACCATC+AGG | 0.509872 | 2_2:+64374266 | None:intergenic |
| GTATATGGAAGTTCAAAGCT+TGG | 0.516811 | 2_2:-64372182 | Msa0264410:CDS |
| AATGCGCAAACTAACAAGTA+GGG | 0.525198 | 2_2:-64373239 | Msa0264410:CDS |
| TGAAAATAAGGTAAAGAATG+AGG | 0.525542 | 2_2:+64374550 | None:intergenic |
| CTGATATAGTTACAGGGACT+CGG | 0.525975 | 2_2:-64373297 | Msa0264410:CDS |
| TTTCCTTACCTAATGAAGCC+TGG | 0.533463 | 2_2:+64373409 | None:intergenic |
| AGAGCAAGACCTAGGAAGAT+GGG | 0.539880 | 2_2:-64373787 | Msa0264410:CDS |
| ACTCGGTATGTTAAAGGCGG+TGG | 0.541395 | 2_2:-64373280 | Msa0264410:CDS |
| GTCGCATATTAATGGTTGGT+TGG | 0.544771 | 2_2:+64371820 | None:intergenic |
| TAGTACGAGCATCCAGAAAA+GGG | 0.550858 | 2_2:-64372981 | Msa0264410:CDS |
| AAGGCGGTGGTGTACATGGA+TGG | 0.557858 | 2_2:-64373267 | Msa0264410:CDS |
| AGTTGTTAAGAGCAAGACCT+AGG | 0.559010 | 2_2:-64373795 | Msa0264410:CDS |
| GTGGATGATGGGAGTCCTGA+TGG | 0.562624 | 2_2:-64374281 | Msa0264410:intron |
| AAGAGTCGCATATTAATGGT+TGG | 0.565148 | 2_2:+64371816 | None:intergenic |
| TGTTGAATACCTGAAAGGCC+TGG | 0.581214 | 2_2:-64372147 | Msa0264410:CDS |
| CGGAGTTAGTTATCGGCCAC+CGG | 0.585776 | 2_2:-64374783 | Msa0264410:five_prime_UTR |
| ATATGGAAGTTCAAAGCTTG+GGG | 0.588590 | 2_2:-64372180 | Msa0264410:CDS |
| CTGGTGCTGATATAGTTACA+GGG | 0.596454 | 2_2:-64373303 | Msa0264410:CDS |
| TAGTCATCAGAAGATATACC+AGG | 0.607775 | 2_2:+64372129 | None:intergenic |
| TCGCGCTGAACTCAACTCGC+CGG | 0.608082 | 2_2:-64374803 | Msa0264410:five_prime_UTR |
| GAGATTGTTGAATACCTGAA+AGG | 0.609990 | 2_2:-64372152 | Msa0264410:CDS |
| CCGGTGTCTCAGATTTGACA+GGG | 0.611198 | 2_2:-64373183 | Msa0264410:CDS |
| CCTGTCAAATCTGAGACACC+GGG | 0.626189 | 2_2:+64373184 | None:intergenic |
| CGGTGGCCGATAACTAACTC+CGG | 0.633953 | 2_2:+64374784 | None:intergenic |
| ATGCGCAAACTAACAAGTAG+GGG | 0.654373 | 2_2:-64373238 | Msa0264410:CDS |
| GAGTTGCTCACTGTTTCCGG+TGG | 0.654634 | 2_2:+64374767 | None:intergenic |
| ATGGAAGTTCAAAGCTTGGG+GGG | 0.696439 | 2_2:-64372178 | Msa0264410:CDS |
| AAAAGGGTACCATATCAAAG+AGG | 0.698624 | 2_2:-64372965 | Msa0264410:intron |
| GGGACTCGGTATGTTAAAGG+CGG | 0.724417 | 2_2:-64373283 | Msa0264410:CDS |
| TATGGAAGTTCAAAGCTTGG+GGG | 0.735164 | 2_2:-64372179 | Msa0264410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATATTTTTCAATTTAA+GGG | - | chr2_2:64372694-64372713 | Msa0264410:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAACGT+AGG | + | chr2_2:64374713-64374732 | None:intergenic | 10.0% |
| !! | CGCATTAATTAAATTAAAAA+AGG | + | chr2_2:64371946-64371965 | None:intergenic | 15.0% |
| !! | TATTATATAATTCTGATTGA+AGG | + | chr2_2:64372253-64372272 | None:intergenic | 15.0% |
| !! | ATAAGTAATGATTCATTAAT+AGG | - | chr2_2:64372491-64372510 | Msa0264410:intron | 15.0% |
| !!! | GATTGATATTTTTCAATTTA+AGG | - | chr2_2:64372693-64372712 | Msa0264410:intron | 15.0% |
| !! | TAATTAATCTTTGATAAAAC+TGG | - | chr2_2:64372941-64372960 | Msa0264410:intron | 15.0% |
| !! | TATAACAAGATATGTATAAA+TGG | + | chr2_2:64373849-64373868 | None:intergenic | 15.0% |
| !!! | TTACAAGTTTTATGAATAAA+AGG | + | chr2_2:64373909-64373928 | None:intergenic | 15.0% |
| !! | TATTCATAAAACTTGTAAAT+TGG | - | chr2_2:64373911-64373930 | Msa0264410:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr2_2:64374726-64374745 | Msa0264410:intron | 15.0% |
| !!! | TTTTGATGATTAATTGATTT+TGG | - | chr2_2:64374777-64374796 | Msa0264410:intron | 15.0% |
| !!! | CCATTATTTTAATCTGAAAT+TGG | + | chr2_2:64372032-64372051 | None:intergenic | 20.0% |
| !! | CCAATTTCAGATTAAAATAA+TGG | - | chr2_2:64372029-64372048 | Msa0264410:three_prime_UTR | 20.0% |
| !! | GAAGAGATTAAAGAAAATTA+CGG | + | chr2_2:64372159-64372178 | None:intergenic | 20.0% |
| !!! | TTTTGTATTGCTCAATTATA+GGG | - | chr2_2:64372348-64372367 | Msa0264410:intron | 20.0% |
| !!! | TTGCTAAAGAAATATTTTGA+TGG | - | chr2_2:64372658-64372677 | Msa0264410:intron | 20.0% |
| !! | TTATTCTAAATAATACGAAG+GGG | + | chr2_2:64372838-64372857 | None:intergenic | 20.0% |
| !! | GTTATTCTAAATAATACGAA+GGG | + | chr2_2:64372839-64372858 | None:intergenic | 20.0% |
| !!! | GATTAATTAGTAAAAGTATC+AGG | + | chr2_2:64372930-64372949 | None:intergenic | 20.0% |
| !! | AAGAGTGATTAAATTTGAAA+AGG | - | chr2_2:64373107-64373126 | Msa0264410:intron | 20.0% |
| !!! | TATTATCTTTTACATTAACC+TGG | - | chr2_2:64373754-64373773 | Msa0264410:intron | 20.0% |
| !!! | GTTTGTCTTTTAATTTTTGT+AGG | - | chr2_2:64374682-64374701 | Msa0264410:intron | 20.0% |
| ! | TGAAAATAAGGTAAAGAATG+AGG | + | chr2_2:64372128-64372147 | None:intergenic | 25.0% |
| ! | AGATTAAAGAAAATTACGGA+AGG | + | chr2_2:64372155-64372174 | None:intergenic | 25.0% |
| !!! | TATTAAATAGCAGCTCTAAA+GGG | + | chr2_2:64372306-64372325 | None:intergenic | 25.0% |
| !! | TTATTAAATAGCAGCTCTAA+AGG | + | chr2_2:64372307-64372326 | None:intergenic | 25.0% |
| !! | CTTTTGTATTGCTCAATTAT+AGG | - | chr2_2:64372347-64372366 | Msa0264410:intron | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | - | chr2_2:64372375-64372394 | Msa0264410:intron | 25.0% |
| !!! | TTGATTGGCATTTTTCAATT+TGG | + | chr2_2:64372529-64372548 | None:intergenic | 25.0% |
| ! | GAGAAAATGACTAAATTGAT+TGG | + | chr2_2:64372544-64372563 | None:intergenic | 25.0% |
| ! | TAGATCCCAAAAAATAGAAT+AGG | + | chr2_2:64372809-64372828 | None:intergenic | 25.0% |
| ! | TATTCTAAATAATACGAAGG+GGG | + | chr2_2:64372837-64372856 | None:intergenic | 25.0% |
| ! | GGTTATTCTAAATAATACGA+AGG | + | chr2_2:64372840-64372859 | None:intergenic | 25.0% |
| ! | AATAACCATGTTTATTCTTG+TGG | - | chr2_2:64372853-64372872 | Msa0264410:intron | 25.0% |
| ! | CATAATGACAACAAAATTTC+CGG | + | chr2_2:64373023-64373042 | None:intergenic | 25.0% |
| ! | AATGAACAGAATAACTTACA+TGG | + | chr2_2:64373063-64373082 | None:intergenic | 25.0% |
| !!! | ATAACGGATATTAAACAGTT+TGG | - | chr2_2:64373535-64373554 | Msa0264410:intron | 25.0% |
| ! | TAAAGGATATGTCTTTCAAA+TGG | - | chr2_2:64373665-64373684 | Msa0264410:CDS | 25.0% |
| ! | AGTGGGTAATTTGAAAAAAA+TGG | + | chr2_2:64374073-64374092 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAATTACCCACT+TGG | - | chr2_2:64374073-64374092 | Msa0264410:intron | 25.0% |
| !!! | ATGTTTTTGCAAAAACTCAA+AGG | - | chr2_2:64374599-64374618 | Msa0264410:CDS | 25.0% |
| ! | AAAAACAGAAAACCAGAAAA+TGG | + | chr2_2:64374831-64374850 | None:intergenic | 25.0% |
| TTGAGTCGTTCATTATATGT+AGG | + | chr2_2:64372099-64372118 | None:intergenic | 30.0% | |
| AAGTTATTGTTGTGGATGAT+GGG | - | chr2_2:64372383-64372402 | Msa0264410:intron | 30.0% | |
| TGTTGTAAAACAATTGCAAC+AGG | - | chr2_2:64372426-64372445 | Msa0264410:intron | 30.0% | |
| AAACAATTGCAACAGGTTTA+TGG | - | chr2_2:64372433-64372452 | Msa0264410:intron | 30.0% | |
| AAATATGACCTTCAATACTG+TGG | + | chr2_2:64372577-64372596 | None:intergenic | 30.0% | |
| TTTAGTCACTGAATTTGCAA+GGG | + | chr2_2:64372763-64372782 | None:intergenic | 30.0% | |
| ! | TTTTAGTCACTGAATTTGCA+AGG | + | chr2_2:64372764-64372783 | None:intergenic | 30.0% |
| CCAAAAAATAGAATAGGTCA+CGG | + | chr2_2:64372803-64372822 | None:intergenic | 30.0% | |
| !!! | CGTGACCTATTCTATTTTTT+GGG | - | chr2_2:64372801-64372820 | Msa0264410:intron | 30.0% |
| TGTAACCACAAGAATAAACA+TGG | + | chr2_2:64372861-64372880 | None:intergenic | 30.0% | |
| ATTTGATGTGGTCAATTTGT+AGG | - | chr2_2:64372965-64372984 | Msa0264410:intron | 30.0% | |
| !! | CGGAAATTTTGTTGTCATTA+TGG | - | chr2_2:64373021-64373040 | Msa0264410:CDS | 30.0% |
| CAGAACAACAAAAACATATC+AGG | + | chr2_2:64373231-64373250 | None:intergenic | 30.0% | |
| ! | ACTGCTTTCTGAAAAAGAAA+AGG | + | chr2_2:64373346-64373365 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAGAAAGCAGT+TGG | - | chr2_2:64373346-64373365 | Msa0264410:intron | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | - | chr2_2:64373468-64373487 | Msa0264410:intron | 30.0% |
| TTAGGTATAGAGCTTGATAA+CGG | - | chr2_2:64373519-64373538 | Msa0264410:intron | 30.0% | |
| TCGTTCTTTGTAGACTTTAT+AGG | - | chr2_2:64373604-64373623 | Msa0264410:intron | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+AGG | - | chr2_2:64373648-64373667 | Msa0264410:CDS | 30.0% | |
| ! | ATCGATTCAAAAGAATGCAA+TGG | + | chr2_2:64374001-64374020 | None:intergenic | 30.0% |
| TACAGCTTAGATTCAACATA+TGG | + | chr2_2:64374030-64374049 | None:intergenic | 30.0% | |
| GAAAATACTTGTAGAGTAGA+TGG | - | chr2_2:64374263-64374282 | Msa0264410:CDS | 30.0% | |
| TTAAGGATTTGAATGCTTGT+TGG | - | chr2_2:64374287-64374306 | Msa0264410:intron | 30.0% | |
| ! | TTTATTGTGTTTGCTACATC+TGG | - | chr2_2:64374323-64374342 | Msa0264410:intron | 30.0% |
| TACTCTACAAGTATTTGAGA+AGG | + | chr2_2:64374354-64374373 | None:intergenic | 30.0% | |
| TCAAATACTTGTAGAGTAGA+TGG | - | chr2_2:64374356-64374375 | Msa0264410:intron | 30.0% | |
| ATATGAAACTAAGGTAAGCT+AGG | + | chr2_2:64374441-64374460 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | - | chr2_2:64374478-64374497 | Msa0264410:intron | 30.0% | |
| TATATGGAAGTTCAAAGCTT+GGG | - | chr2_2:64374494-64374513 | Msa0264410:intron | 30.0% | |
| !! | TTTGCTAACAGTTTTAACGT+AGG | + | chr2_2:64374757-64374776 | None:intergenic | 30.0% |
| ! | ACTTATGTTGATCCATTTTC+TGG | - | chr2_2:64374816-64374835 | Msa0264410:five_prime_UTR | 30.0% |
| !! | ACGGAAGGTGTTTGAAAATA+AGG | + | chr2_2:64372140-64372159 | None:intergenic | 35.0% |
| GAAGTTATTGTTGTGGATGA+TGG | - | chr2_2:64372382-64372401 | Msa0264410:intron | 35.0% | |
| AACAGGTTTATGGAGAAGAT+CGG | - | chr2_2:64372443-64372462 | Msa0264410:intron | 35.0% | |
| ! | ATTATGCACCACAGTATTGA+AGG | - | chr2_2:64372566-64372585 | Msa0264410:intron | 35.0% |
| !!! | CCGTGACCTATTCTATTTTT+TGG | - | chr2_2:64372800-64372819 | Msa0264410:intron | 35.0% |
| GATAAAACTGGCATTTGATG+TGG | - | chr2_2:64372953-64372972 | Msa0264410:intron | 35.0% | |
| ATGTGGTCAATTTGTAGGTA+CGG | - | chr2_2:64372970-64372989 | Msa0264410:CDS | 35.0% | |
| ATGCTTCATGCCATGAATAT+AGG | + | chr2_2:64372996-64373015 | None:intergenic | 35.0% | |
| GGAATAGAAAGTTGACAAAC+AGG | - | chr2_2:64373128-64373147 | Msa0264410:intron | 35.0% | |
| ACAAACAGGACTTGAATAGT+TGG | - | chr2_2:64373142-64373161 | Msa0264410:intron | 35.0% | |
| ! | ATGAAGCCTGGCAAATATTT+TGG | + | chr2_2:64373257-64373276 | None:intergenic | 35.0% |
| AATATTTGCCAGGCTTCATT+AGG | - | chr2_2:64373258-64373277 | Msa0264410:CDS | 35.0% | |
| ! | AAAAGGCAAGAGTTAAGTTG+TGG | + | chr2_2:64373329-64373348 | None:intergenic | 35.0% |
| TAATGCGCAAACTAACAAGT+AGG | - | chr2_2:64373435-64373454 | Msa0264410:intron | 35.0% | |
| AATGCGCAAACTAACAAGTA+GGG | - | chr2_2:64373436-64373455 | Msa0264410:intron | 35.0% | |
| ! | TTTGATATGGTACCCTTTTC+TGG | + | chr2_2:64373709-64373728 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATCAAAG+AGG | - | chr2_2:64373710-64373729 | Msa0264410:intron | 35.0% |
| ATGATGTCAACATAACAACC+AGG | + | chr2_2:64373775-64373794 | None:intergenic | 35.0% | |
| CATGAGTTAGATGTGTAGTT+AGG | - | chr2_2:64373799-64373818 | Msa0264410:intron | 35.0% | |
| TTCAAATTACCCACTTGGAT+AGG | - | chr2_2:64374078-64374097 | Msa0264410:intron | 35.0% | |
| AGTACGACTGTCATTCAAAT+TGG | + | chr2_2:64374193-64374212 | None:intergenic | 35.0% | |
| CCTGTAGACATATGAAACTA+AGG | + | chr2_2:64374450-64374469 | None:intergenic | 35.0% | |
| CCTTAGTTTCATATGTCTAC+AGG | - | chr2_2:64374447-64374466 | Msa0264410:intron | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | + | chr2_2:64374475-64374494 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | - | chr2_2:64374493-64374512 | Msa0264410:intron | 35.0% | |
| ATATGGAAGTTCAAAGCTTG+GGG | - | chr2_2:64374495-64374514 | Msa0264410:intron | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | - | chr2_2:64374523-64374542 | Msa0264410:intron | 35.0% | |
| TAGTCATCAGAAGATATACC+AGG | + | chr2_2:64374549-64374568 | None:intergenic | 35.0% | |
| GTTCAGTAACCTGATTATTG+AGG | - | chr2_2:64374630-64374649 | Msa0264410:CDS | 35.0% | |
| AACTTGTGTCCTCAATAATC+AGG | + | chr2_2:64374642-64374661 | None:intergenic | 35.0% | |
| CAAACTATGCAGATTCTATC+AGG | + | chr2_2:64374667-64374686 | None:intergenic | 35.0% | |
| AAGAGTCGCATATTAATGGT+TGG | + | chr2_2:64374862-64374881 | None:intergenic | 35.0% | |
| TAGGAAGAGTCGCATATTAA+TGG | + | chr2_2:64374866-64374885 | None:intergenic | 35.0% | |
| AATATGCGACTCTTCCTAAA+TGG | - | chr2_2:64374868-64374887 | Msa0264410:five_prime_UTR | 35.0% | |
| TAGTGTCATGTCATGTGTGT+TGG | - | chr2_2:64372222-64372241 | Msa0264410:intron | 40.0% | |
| ACAACATCTTGAGTACCATC+AGG | + | chr2_2:64372412-64372431 | None:intergenic | 40.0% | |
| ! | AGGTCACGGATTGAGTAAAT+AGG | + | chr2_2:64372789-64372808 | None:intergenic | 40.0% |
| AGTTGTTAAGAGCAAGACCT+AGG | - | chr2_2:64372880-64372899 | Msa0264410:intron | 40.0% | |
| TTTCCTTACCTAATGAAGCC+TGG | + | chr2_2:64373269-64373288 | None:intergenic | 40.0% | |
| TTCAGAAAGCAGTTGGAAAC+TGG | - | chr2_2:64373353-64373372 | Msa0264410:intron | 40.0% | |
| !! | ACTGGTGCTGATATAGTTAC+AGG | - | chr2_2:64373371-64373390 | Msa0264410:intron | 40.0% |
| !! | CTGGTGCTGATATAGTTACA+GGG | - | chr2_2:64373372-64373391 | Msa0264410:intron | 40.0% |
| CTGATATAGTTACAGGGACT+CGG | - | chr2_2:64373378-64373397 | Msa0264410:intron | 40.0% | |
| ATGCGCAAACTAACAAGTAG+GGG | - | chr2_2:64373437-64373456 | Msa0264410:intron | 40.0% | |
| ! | CAGATTTGACAGGGTCTTTT+AGG | - | chr2_2:64373501-64373520 | Msa0264410:intron | 40.0% |
| AATCTCAAACCAGTCAACAG+GGG | + | chr2_2:64373575-64373594 | None:intergenic | 40.0% | |
| CAATCTCAAACCAGTCAACA+GGG | + | chr2_2:64373576-64373595 | None:intergenic | 40.0% | |
| TCAATCTCAAACCAGTCAAC+AGG | + | chr2_2:64373577-64373596 | None:intergenic | 40.0% | |
| ATAGTACGAGCATCCAGAAA+AGG | - | chr2_2:64373693-64373712 | Msa0264410:intron | 40.0% | |
| TAGTACGAGCATCCAGAAAA+GGG | - | chr2_2:64373694-64373713 | Msa0264410:intron | 40.0% | |
| CTTGTAGAGTAGATGGCTTA+AGG | - | chr2_2:64374270-64374289 | Msa0264410:CDS | 40.0% | |
| CAGAGTGATAAGCTTGAACA+GGG | + | chr2_2:64374404-64374423 | None:intergenic | 40.0% | |
| ACAGAGTGATAAGCTTGAAC+AGG | + | chr2_2:64374405-64374424 | None:intergenic | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+GGG | - | chr2_2:64374496-64374515 | Msa0264410:intron | 40.0% | |
| GTCGCATATTAATGGTTGGT+TGG | + | chr2_2:64374858-64374877 | None:intergenic | 40.0% | |
| AACTCGCCGGAGTTAGTTAT+CGG | - | chr2_2:64371885-64371904 | Msa0264410:three_prime_UTR | 45.0% | |
| AACGAGTTGCTCACTGTTTC+CGG | + | chr2_2:64371914-64371933 | None:intergenic | 45.0% | |
| TCATGTCATGTGTGTTGGAC+AGG | - | chr2_2:64372227-64372246 | Msa0264410:intron | 45.0% | |
| AAGAGCAAGACCTAGGAAGA+TGG | - | chr2_2:64372887-64372906 | Msa0264410:intron | 45.0% | |
| AGAGCAAGACCTAGGAAGAT+GGG | - | chr2_2:64372888-64372907 | Msa0264410:intron | 45.0% | |
| ! | AGACCTAGGAAGATGGGTTT+AGG | - | chr2_2:64372894-64372913 | Msa0264410:intron | 45.0% |
| ACACCTAAACCCATCTTCCT+AGG | + | chr2_2:64372900-64372919 | None:intergenic | 45.0% | |
| GTAGGTACGGCCTATATTCA+TGG | - | chr2_2:64372983-64373002 | Msa0264410:CDS | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | - | chr2_2:64373248-64373267 | Msa0264410:CDS | 45.0% | |
| TTGCCAGGCTTCATTAGGTA+AGG | - | chr2_2:64373263-64373282 | Msa0264410:CDS | 45.0% | |
| ! | ACAGGGACTCGGTATGTTAA+AGG | - | chr2_2:64373389-64373408 | Msa0264410:intron | 45.0% |
| ! | GCACAAACACTTTTATGGCC+CGG | - | chr2_2:64373473-64373492 | Msa0264410:intron | 45.0% |
| GGTACCATATCAAAGAGGTG+CGG | - | chr2_2:64373715-64373734 | Msa0264410:intron | 45.0% | |
| GAAACCGCACCTCTTTGATA+TGG | + | chr2_2:64373722-64373741 | None:intergenic | 45.0% | |
| TGTATGTGCTCTGTCTGTTC+AGG | - | chr2_2:64373950-64373969 | Msa0264410:intron | 45.0% | |
| ATGCAACAGCCTATCCAAGT+GGG | + | chr2_2:64374090-64374109 | None:intergenic | 45.0% | |
| TTGGATAGGCTGTTGCATGT+TGG | - | chr2_2:64374092-64374111 | Msa0264410:intron | 45.0% | |
| TCAGACAGTTTGCAAAGCAC+AGG | + | chr2_2:64374224-64374243 | None:intergenic | 45.0% | |
| ATGGAAGTTCAAAGCTTGGG+GGG | - | chr2_2:64374497-64374516 | Msa0264410:intron | 45.0% | |
| TGTTGAATACCTGAAAGGCC+TGG | - | chr2_2:64374528-64374547 | Msa0264410:intron | 45.0% | |
| GAAGATATACCAGGCCTTTC+AGG | + | chr2_2:64374540-64374559 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr2_2:64374723-64374742 | Msa0264410:intron | 5.0% |
| ! | TCTAAAGGGCTCTAGTGCAG+CGG | + | chr2_2:64372292-64372311 | None:intergenic | 50.0% |
| ! | GGGACTCGGTATGTTAAAGG+CGG | - | chr2_2:64373392-64373411 | Msa0264410:intron | 50.0% |
| ACTCGGTATGTTAAAGGCGG+TGG | - | chr2_2:64373395-64373414 | Msa0264410:intron | 50.0% | |
| GTTAAAGGCGGTGGTGTACA+TGG | - | chr2_2:64373404-64373423 | Msa0264410:intron | 50.0% | |
| ! | CCTGTCAAATCTGAGACACC+GGG | + | chr2_2:64373494-64373513 | None:intergenic | 50.0% |
| ! | CCCTGTCAAATCTGAGACAC+CGG | + | chr2_2:64373495-64373514 | None:intergenic | 50.0% |
| CCGGTGTCTCAGATTTGACA+GGG | - | chr2_2:64373492-64373511 | Msa0264410:intron | 50.0% | |
| TTTGTTGCTCCCCTGTTGAC+TGG | - | chr2_2:64373563-64373582 | Msa0264410:intron | 50.0% | |
| AGGTGCGGTTTCTTACGTGA+GGG | - | chr2_2:64373730-64373749 | Msa0264410:intron | 50.0% | |
| CATGCAACAGCCTATCCAAG+TGG | + | chr2_2:64374091-64374110 | None:intergenic | 50.0% | |
| CGGTGGCCGATAACTAACTC+CGG | + | chr2_2:64371894-64371913 | None:intergenic | 55.0% | |
| CGGAGTTAGTTATCGGCCAC+CGG | - | chr2_2:64371892-64371911 | Msa0264410:three_prime_UTR | 55.0% | |
| GAGTTGCTCACTGTTTCCGG+TGG | + | chr2_2:64371911-64371930 | None:intergenic | 55.0% | |
| !! | GTGGATGATGGGAGTCCTGA+TGG | - | chr2_2:64372394-64372413 | Msa0264410:intron | 55.0% |
| CATGGCATGAAGCATGCGTC+CGG | - | chr2_2:64373001-64373020 | Msa0264410:CDS | 55.0% | |
| AAGGCGGTGGTGTACATGGA+TGG | - | chr2_2:64373408-64373427 | Msa0264410:intron | 55.0% | |
| CCCGGTGTCTCAGATTTGAC+AGG | - | chr2_2:64373491-64373510 | Msa0264410:intron | 55.0% | |
| GAGGTGCGGTTTCTTACGTG+AGG | - | chr2_2:64373729-64373748 | Msa0264410:intron | 55.0% | |
| TCGCGCTGAACTCAACTCGC+CGG | - | chr2_2:64371872-64371891 | Msa0264410:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64371803 | 64374894 | 64371803 | ID=Msa0264410;Name=Msa0264410 |
| chr2_2 | mRNA | 64371803 | 64374894 | 64371803 | ID=Msa0264410-mRNA-1;Parent=Msa0264410;Name=Msa0264410-mRNA-1;_AED=0.24;_eAED=0.24;_QI=126|0.77|0.9|1|0.55|0.5|10|291|223 |
| chr2_2 | exon | 64371803 | 64372066 | 64371803 | ID=Msa0264410-mRNA-1:exon:20083;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64372097 | 64372228 | 64372097 | ID=Msa0264410-mRNA-1:exon:20082;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64372966 | 64373080 | 64372966 | ID=Msa0264410-mRNA-1:exon:20081;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64373175 | 64373339 | 64373175 | ID=Msa0264410-mRNA-1:exon:20080;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64373418 | 64373443 | 64373418 | ID=Msa0264410-mRNA-1:exon:20079;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64373634 | 64373710 | 64373634 | ID=Msa0264410-mRNA-1:exon:20078;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64373782 | 64373815 | 64373782 | ID=Msa0264410-mRNA-1:exon:20077;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64374250 | 64374289 | 64374250 | ID=Msa0264410-mRNA-1:exon:20076;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64374540 | 64374658 | 64374540 | ID=Msa0264410-mRNA-1:exon:20075;Parent=Msa0264410-mRNA-1 |
| chr2_2 | exon | 64374778 | 64374894 | 64374778 | ID=Msa0264410-mRNA-1:exon:20074;Parent=Msa0264410-mRNA-1 |
| chr2_2 | five_prime_UTR | 64374778 | 64374894 | 64374778 | ID=Msa0264410-mRNA-1:five_prime_utr;Parent=Msa0264410-mRNA-1 |
| chr2_2 | five_prime_UTR | 64374650 | 64374658 | 64374650 | ID=Msa0264410-mRNA-1:five_prime_utr;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64374540 | 64374649 | 64374540 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64374250 | 64374289 | 64374250 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64373782 | 64373815 | 64373782 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64373634 | 64373710 | 64373634 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64373418 | 64373443 | 64373418 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64373175 | 64373339 | 64373175 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64372966 | 64373080 | 64372966 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | CDS | 64372124 | 64372228 | 64372124 | ID=Msa0264410-mRNA-1:cds;Parent=Msa0264410-mRNA-1 |
| chr2_2 | three_prime_UTR | 64372097 | 64372123 | 64372097 | ID=Msa0264410-mRNA-1:three_prime_utr;Parent=Msa0264410-mRNA-1 |
| chr2_2 | three_prime_UTR | 64371803 | 64372066 | 64371803 | ID=Msa0264410-mRNA-1:three_prime_utr;Parent=Msa0264410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
