Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223200 | XP_024631934.2 | 89.712 | 243 | 5 | 2 | 1 | 223 | 1 | 243 | 1.45e-151 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223200 | sp|Q9LM93|DPM1_ARATH | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.74e-137 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223200 | A0A396IBZ2 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 9.05e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033840 | Msa0223200 | 0.810357 | 1.199841e-50 | -8.615850e-47 |
| Msa0061220 | Msa0223200 | -0.801255 | 9.816288e-49 | -8.615850e-47 |
| Msa0081610 | Msa0223200 | 0.810638 | 1.043433e-50 | -8.615850e-47 |
| Msa0173950 | Msa0223200 | 0.801818 | 7.524268e-49 | -8.615850e-47 |
| Msa0223200 | Msa0264410 | 0.894048 | 3.554389e-75 | -8.615850e-47 |
| Msa0223200 | Msa0302300 | 0.960281 | 2.219241e-118 | -8.615850e-47 |
| Msa0223200 | Msa0339660 | 0.968939 | 2.140412e-129 | -8.615850e-47 |
| Msa0223200 | Msa0592330 | -0.804176 | 2.449296e-49 | -8.615850e-47 |
| Msa0223200 | Msa0611060 | -0.804864 | 1.760528e-49 | -8.615850e-47 |
| Msa0223200 | Msa0613300 | -0.824434 | 8.088081e-54 | -8.615850e-47 |
| Msa0223200 | Msa0744640 | -0.802128 | 6.497352e-49 | -8.615850e-47 |
| Msa0223200 | Msa0841730 | -0.802846 | 4.621388e-49 | -8.615850e-47 |
| Msa0223200 | Msa1427190 | 0.981294 | 3.069364e-152 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223200 | MtrunA17_Chr4g0046071 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 1.74e-152 | 423 |
| Msa0223200 | MtrunA17_Chr2g0328281 | 82.456 | 228 | 30 | 2 | 3 | 223 | 13 | 237 | 6.60e-134 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223200 | AT1G20575.1 | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.80e-138 | 387 |
Find 66 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAGTTGCTCACTGTTTC+CGG | 0.175480 | 2_1:-72732910 | None:intergenic |
| TCGTTCTTTGTAGACTTTAT+AGG | 0.189170 | 2_1:+72734638 | Msa0223200:intron |
| ATGAAGCCTGGCAAATATTT+TGG | 0.190219 | 2_1:-72734288 | None:intergenic |
| GAAGATATACCAGGCCTTTC+AGG | 0.213828 | 2_1:-72735572 | None:intergenic |
| CCAATTTCAGATTAAAATAA+TGG | 0.221772 | 2_1:+72733028 | Msa0223200:intron |
| GAGCAGTTGCATTTCCATTT+AGG | 0.258096 | 2_1:-72735915 | None:intergenic |
| CATAATGACAACAAAATTTC+CGG | 0.304728 | 2_1:-72734054 | None:intergenic |
| TAGGAAGAGTCGCATATTAA+TGG | 0.310873 | 2_1:-72735896 | None:intergenic |
| AATATGCGACTCTTCCTAAA+TGG | 0.322673 | 2_1:+72735901 | Msa0223200:three_prime_UTR |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | 2_1:+72735513 | Msa0223200:CDS |
| AATATTTGCCAGGCTTCATT+AGG | 0.338833 | 2_1:+72734292 | Msa0223200:CDS |
| CAAACTATGCAGATTCTATC+AGG | 0.349018 | 2_1:-72735698 | None:intergenic |
| ACTGGTGCTGATATAGTTAC+AGG | 0.361148 | 2_1:+72734405 | Msa0223200:CDS |
| ACAGGGACTCGGTATGTTAA+AGG | 0.371437 | 2_1:+72734423 | Msa0223200:CDS |
| TTCAGAAAGCAGTTGGAAAC+TGG | 0.371824 | 2_1:+72734387 | Msa0223200:intron |
| ATGCTTCATGCCATGAATAT+AGG | 0.378458 | 2_1:-72734027 | None:intergenic |
| GTAGGTACGGCCTATATTCA+TGG | 0.398632 | 2_1:+72734017 | Msa0223200:intron |
| AGACCTAGGAAGATGGGTTT+AGG | 0.404208 | 2_1:+72733928 | Msa0223200:CDS |
| AACTTGTGTCCTCAATAATC+AGG | 0.426075 | 2_1:-72735673 | None:intergenic |
| TATATGGAAGTTCAAAGCTT+GGG | 0.426124 | 2_1:+72735529 | Msa0223200:CDS |
| TAAAGGATATGTCTTTCAAA+TGG | 0.429662 | 2_1:+72734699 | Msa0223200:CDS |
| TGTTGTAAAACAATTGCAAC+AGG | 0.432571 | 2_1:+72733454 | Msa0223200:CDS |
| AACTCGCCGGAGTTAGTTAT+CGG | 0.450823 | 2_1:+72732884 | Msa0223200:five_prime_UTR |
| GAAACCGCACCTCTTTGATA+TGG | 0.453561 | 2_1:-72734753 | None:intergenic |
| CTGCAGCCAAAATATTTGCC+AGG | 0.467710 | 2_1:+72734282 | Msa0223200:intron |
| CCCGGTGTCTCAGATTTGAC+AGG | 0.469407 | 2_1:+72734525 | Msa0223200:CDS |
| TTGAGTCGTTCATTATATGT+AGG | 0.474173 | 2_1:-72733095 | None:intergenic |
| CCCTGTCAAATCTGAGACAC+CGG | 0.478872 | 2_1:-72734526 | None:intergenic |
| ATAGTACGAGCATCCAGAAA+AGG | 0.481126 | 2_1:+72734727 | Msa0223200:CDS |
| ATTAGTTGCTGTGTTAGTAA+AGG | 0.488144 | 2_1:+72734682 | Msa0223200:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | 2_1:-72735507 | None:intergenic |
| ACACCTAAACCCATCTTCCT+AGG | 0.493673 | 2_1:-72733931 | None:intergenic |
| TAATGCGCAAACTAACAAGT+AGG | 0.495530 | 2_1:+72734469 | Msa0223200:CDS |
| GTTCAGTAACCTGATTATTG+AGG | 0.497826 | 2_1:+72735664 | Msa0223200:three_prime_UTR |
| CATGGCATGAAGCATGCGTC+CGG | 0.503198 | 2_1:+72734035 | Msa0223200:CDS |
| AAGAGCAAGACCTAGGAAGA+TGG | 0.504382 | 2_1:+72733921 | Msa0223200:CDS |
| GTTAAAGGCGGTGGTGTACA+TGG | 0.509663 | 2_1:+72734438 | Msa0223200:CDS |
| ACAACATCTTGAGTACCATC+AGG | 0.509872 | 2_1:-72733437 | None:intergenic |
| GTATATGGAAGTTCAAAGCT+TGG | 0.516811 | 2_1:+72735528 | Msa0223200:CDS |
| AATGCGCAAACTAACAAGTA+GGG | 0.525198 | 2_1:+72734470 | Msa0223200:CDS |
| CTGATATAGTTACAGGGACT+CGG | 0.525975 | 2_1:+72734412 | Msa0223200:CDS |
| TTTCCTTACCTAATGAAGCC+TGG | 0.533463 | 2_1:-72734300 | None:intergenic |
| AGAGCAAGACCTAGGAAGAT+GGG | 0.539880 | 2_1:+72733922 | Msa0223200:CDS |
| ACTCGGTATGTTAAAGGCGG+TGG | 0.541395 | 2_1:+72734429 | Msa0223200:CDS |
| GTCGCATATTAATGGTTGGT+TGG | 0.544771 | 2_1:-72735888 | None:intergenic |
| TAGTACGAGCATCCAGAAAA+GGG | 0.550858 | 2_1:+72734728 | Msa0223200:CDS |
| AAGGCGGTGGTGTACATGGA+TGG | 0.557858 | 2_1:+72734442 | Msa0223200:CDS |
| AGTTGTTAAGAGCAAGACCT+AGG | 0.559010 | 2_1:+72733914 | Msa0223200:intron |
| GTGGATGATGGGAGTCCTGA+TGG | 0.562624 | 2_1:+72733422 | Msa0223200:intron |
| AAGAGTCGCATATTAATGGT+TGG | 0.565148 | 2_1:-72735892 | None:intergenic |
| TGTTGAATACCTGAAAGGCC+TGG | 0.581214 | 2_1:+72735563 | Msa0223200:CDS |
| CGGAGTTAGTTATCGGCCAC+CGG | 0.585776 | 2_1:+72732891 | Msa0223200:five_prime_UTR |
| ATATGGAAGTTCAAAGCTTG+GGG | 0.588590 | 2_1:+72735530 | Msa0223200:CDS |
| CTGGTGCTGATATAGTTACA+GGG | 0.596454 | 2_1:+72734406 | Msa0223200:CDS |
| TAGTCATCAGAAGATATACC+AGG | 0.607775 | 2_1:-72735581 | None:intergenic |
| TCGCGCTGAACTCAACTCGC+CGG | 0.608082 | 2_1:+72732871 | Msa0223200:five_prime_UTR |
| GAGATTGTTGAATACCTGAA+AGG | 0.609990 | 2_1:+72735558 | Msa0223200:CDS |
| CCGGTGTCTCAGATTTGACA+GGG | 0.611198 | 2_1:+72734526 | Msa0223200:CDS |
| CCTGTCAAATCTGAGACACC+GGG | 0.626189 | 2_1:-72734525 | None:intergenic |
| CGGTGGCCGATAACTAACTC+CGG | 0.633953 | 2_1:-72732890 | None:intergenic |
| ATGCGCAAACTAACAAGTAG+GGG | 0.654373 | 2_1:+72734471 | Msa0223200:CDS |
| GAGTTGCTCACTGTTTCCGG+TGG | 0.654634 | 2_1:-72732907 | None:intergenic |
| ATGGAAGTTCAAAGCTTGGG+GGG | 0.696439 | 2_1:+72735532 | Msa0223200:CDS |
| AAAAGGGTACCATATCAAAG+AGG | 0.698624 | 2_1:+72734744 | Msa0223200:CDS |
| GGGACTCGGTATGTTAAAGG+CGG | 0.724417 | 2_1:+72734426 | Msa0223200:CDS |
| TATGGAAGTTCAAAGCTTGG+GGG | 0.735164 | 2_1:+72735531 | Msa0223200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATATTTTTCAATTTAA+GGG | + | chr2_1:72733728-72733747 | Msa0223200:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAACGT+AGG | - | chr2_1:72735747-72735766 | None:intergenic | 10.0% |
| !! | CGCATTAATTAAATTAAAAA+AGG | - | chr2_1:72732945-72732964 | None:intergenic | 15.0% |
| !!! | GATTGATATTTTTCAATTTA+AGG | + | chr2_1:72733727-72733746 | Msa0223200:intron | 15.0% |
| !! | TAATTAATCTTTGATAAAAC+TGG | + | chr2_1:72733975-72733994 | Msa0223200:intron | 15.0% |
| !! | TATAACAAGATATGTATAAA+TGG | - | chr2_1:72734883-72734902 | None:intergenic | 15.0% |
| !!! | TTACAAGTTTTATGAATAAA+AGG | - | chr2_1:72734943-72734962 | None:intergenic | 15.0% |
| !! | TATTCATAAAACTTGTAAAT+TGG | + | chr2_1:72734945-72734964 | Msa0223200:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | + | chr2_1:72735759-72735778 | Msa0223200:intron | 15.0% |
| !!! | TTTTGATGATTAATTGATTT+TGG | + | chr2_1:72735810-72735829 | Msa0223200:three_prime_UTR | 15.0% |
| !!! | CCATTATTTTAATCTGAAAT+TGG | - | chr2_1:72733031-72733050 | None:intergenic | 20.0% |
| !! | CCAATTTCAGATTAAAATAA+TGG | + | chr2_1:72733028-72733047 | Msa0223200:intron | 20.0% |
| !! | TAAAAATAAGGTAAAGAATG+AGG | - | chr2_1:72733127-72733146 | None:intergenic | 20.0% |
| !! | GAAGAGATTAAAGAAAATTA+CGG | - | chr2_1:72733158-72733177 | None:intergenic | 20.0% |
| !!! | TTGCTAAAGAAATATTTTGA+TGG | + | chr2_1:72733692-72733711 | Msa0223200:intron | 20.0% |
| !! | TTATTCTAAATAATACGAAG+GGG | - | chr2_1:72733872-72733891 | None:intergenic | 20.0% |
| !! | GTTATTCTAAATAATACGAA+GGG | - | chr2_1:72733873-72733892 | None:intergenic | 20.0% |
| !!! | GATTAATTAGTAAAAGTATC+AGG | - | chr2_1:72733964-72733983 | None:intergenic | 20.0% |
| !! | AAGAGTGATTAAATTTGAAA+AGG | + | chr2_1:72734141-72734160 | Msa0223200:intron | 20.0% |
| !!! | TATTATCTTTTACATTAACC+TGG | + | chr2_1:72734788-72734807 | Msa0223200:intron | 20.0% |
| !!! | GTTTGTCTTTTAATTTTTGT+AGG | + | chr2_1:72735716-72735735 | Msa0223200:intron | 20.0% |
| ! | AGATTAAAGAAAATTACGGA+AGG | - | chr2_1:72733154-72733173 | None:intergenic | 25.0% |
| ! | TGTCAAATAATTCTGATTGA+AGG | - | chr2_1:72733252-72733271 | None:intergenic | 25.0% |
| !!! | TATTAAATAGCAGCTCTAAA+GGG | - | chr2_1:72733334-72733353 | None:intergenic | 25.0% |
| !! | TTATTAAATAGCAGCTCTAA+AGG | - | chr2_1:72733335-72733354 | None:intergenic | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | + | chr2_1:72733403-72733422 | Msa0223200:intron | 25.0% |
| ! | ATAAGTAGTGCTTCATAAAT+AGG | + | chr2_1:72733522-72733541 | Msa0223200:intron | 25.0% |
| ! | TAGATCCCAAAAAATAGAAT+AGG | - | chr2_1:72733843-72733862 | None:intergenic | 25.0% |
| ! | TATTCTAAATAATACGAAGG+GGG | - | chr2_1:72733871-72733890 | None:intergenic | 25.0% |
| ! | GGTTATTCTAAATAATACGA+AGG | - | chr2_1:72733874-72733893 | None:intergenic | 25.0% |
| ! | AATAACCATGTTTATTCTTG+TGG | + | chr2_1:72733887-72733906 | Msa0223200:intron | 25.0% |
| ! | CATAATGACAACAAAATTTC+CGG | - | chr2_1:72734057-72734076 | None:intergenic | 25.0% |
| ! | AATGAACAGAATAACTTACA+TGG | - | chr2_1:72734097-72734116 | None:intergenic | 25.0% |
| !!! | ATAACGGATATTAAACAGTT+TGG | + | chr2_1:72734569-72734588 | Msa0223200:intron | 25.0% |
| ! | TAAAGGATATGTCTTTCAAA+TGG | + | chr2_1:72734699-72734718 | Msa0223200:CDS | 25.0% |
| ! | AGTGGGTAATTTGAAAAAAA+TGG | - | chr2_1:72735108-72735127 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAATTACCCACT+TGG | + | chr2_1:72735108-72735127 | Msa0223200:intron | 25.0% |
| !! | TATGTTTTGCAAAAACTCAA+AGG | + | chr2_1:72735633-72735652 | Msa0223200:three_prime_UTR | 25.0% |
| ! | AAAAACAGAAAACCAGAAAA+TGG | - | chr2_1:72735864-72735883 | None:intergenic | 25.0% |
| TTGAGTCGTTCATTATATGT+AGG | - | chr2_1:72733098-72733117 | None:intergenic | 30.0% | |
| !! | ACGGAAGGTGTTTAAAAATA+AGG | - | chr2_1:72733139-72733158 | None:intergenic | 30.0% |
| AAGTTATTGTTGTGGATGAT+GGG | + | chr2_1:72733411-72733430 | Msa0223200:intron | 30.0% | |
| TGTTGTAAAACAATTGCAAC+AGG | + | chr2_1:72733454-72733473 | Msa0223200:CDS | 30.0% | |
| AAACAATTGCAACAGGTTTA+TGG | + | chr2_1:72733461-72733480 | Msa0223200:intron | 30.0% | |
| AAATATGACCTTCAATACTG+TGG | - | chr2_1:72733608-72733627 | None:intergenic | 30.0% | |
| TTTAGTCACTGAATTTGCAA+GGG | - | chr2_1:72733797-72733816 | None:intergenic | 30.0% | |
| ! | TTTTAGTCACTGAATTTGCA+AGG | - | chr2_1:72733798-72733817 | None:intergenic | 30.0% |
| CCAAAAAATAGAATAGGTCA+CGG | - | chr2_1:72733837-72733856 | None:intergenic | 30.0% | |
| !!! | CGTGACCTATTCTATTTTTT+GGG | + | chr2_1:72733835-72733854 | Msa0223200:intron | 30.0% |
| TGTAACCACAAGAATAAACA+TGG | - | chr2_1:72733895-72733914 | None:intergenic | 30.0% | |
| ATTTGATGTGGTCAATTTGT+AGG | + | chr2_1:72733999-72734018 | Msa0223200:intron | 30.0% | |
| !! | CGGAAATTTTGTTGTCATTA+TGG | + | chr2_1:72734055-72734074 | Msa0223200:CDS | 30.0% |
| CAGAACAACAAAAACATATC+AGG | - | chr2_1:72734265-72734284 | None:intergenic | 30.0% | |
| ! | ACTGCTTTCTGAAAAAGAAA+AGG | - | chr2_1:72734380-72734399 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAGAAAGCAGT+TGG | + | chr2_1:72734380-72734399 | Msa0223200:intron | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | + | chr2_1:72734502-72734521 | Msa0223200:CDS | 30.0% |
| TTAGGTATAGAGCTTGATAA+CGG | + | chr2_1:72734553-72734572 | Msa0223200:intron | 30.0% | |
| TCGTTCTTTGTAGACTTTAT+AGG | + | chr2_1:72734638-72734657 | Msa0223200:intron | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+AGG | + | chr2_1:72734682-72734701 | Msa0223200:CDS | 30.0% | |
| ! | ATCGATTCAAAAGAATGCAA+TGG | - | chr2_1:72735035-72735054 | None:intergenic | 30.0% |
| TACAGCTTAGATTCAACATA+TGG | - | chr2_1:72735064-72735083 | None:intergenic | 30.0% | |
| GAAAATACTTGTAGAGTAGA+TGG | + | chr2_1:72735298-72735317 | Msa0223200:intron | 30.0% | |
| TTAAGGATTTGAATGCTTGT+TGG | + | chr2_1:72735322-72735341 | Msa0223200:intron | 30.0% | |
| ! | TTTATTGTGTTTGCTACATC+TGG | + | chr2_1:72735358-72735377 | Msa0223200:intron | 30.0% |
| TACTCTACAAGTATTTGAGA+AGG | - | chr2_1:72735389-72735408 | None:intergenic | 30.0% | |
| TCAAATACTTGTAGAGTAGA+TGG | + | chr2_1:72735391-72735410 | Msa0223200:intron | 30.0% | |
| ATATGAAACTAAGGTAAGCT+AGG | - | chr2_1:72735476-72735495 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | + | chr2_1:72735513-72735532 | Msa0223200:CDS | 30.0% | |
| TATATGGAAGTTCAAAGCTT+GGG | + | chr2_1:72735529-72735548 | Msa0223200:CDS | 30.0% | |
| !! | TTTGCTAACAGTTTTAACGT+AGG | - | chr2_1:72735790-72735809 | None:intergenic | 30.0% |
| ! | ACTTATGTTGATCCATTTTC+TGG | + | chr2_1:72735849-72735868 | Msa0223200:three_prime_UTR | 30.0% |
| GAAGTTATTGTTGTGGATGA+TGG | + | chr2_1:72733410-72733429 | Msa0223200:intron | 35.0% | |
| AACAGGTTTATGGAGAAGAT+CGG | + | chr2_1:72733471-72733490 | Msa0223200:intron | 35.0% | |
| !!! | CCGTGACCTATTCTATTTTT+TGG | + | chr2_1:72733834-72733853 | Msa0223200:intron | 35.0% |
| GATAAAACTGGCATTTGATG+TGG | + | chr2_1:72733987-72734006 | Msa0223200:intron | 35.0% | |
| ATGTGGTCAATTTGTAGGTA+CGG | + | chr2_1:72734004-72734023 | Msa0223200:intron | 35.0% | |
| ATGCTTCATGCCATGAATAT+AGG | - | chr2_1:72734030-72734049 | None:intergenic | 35.0% | |
| GGAATAGAAAGTTGACAAAC+AGG | + | chr2_1:72734162-72734181 | Msa0223200:intron | 35.0% | |
| ACAAACAGGACTTGAATAGT+TGG | + | chr2_1:72734176-72734195 | Msa0223200:intron | 35.0% | |
| ! | ATGAAGCCTGGCAAATATTT+TGG | - | chr2_1:72734291-72734310 | None:intergenic | 35.0% |
| AATATTTGCCAGGCTTCATT+AGG | + | chr2_1:72734292-72734311 | Msa0223200:CDS | 35.0% | |
| ! | AAAAGGCAAGAGTTAAGTTG+TGG | - | chr2_1:72734363-72734382 | None:intergenic | 35.0% |
| TAATGCGCAAACTAACAAGT+AGG | + | chr2_1:72734469-72734488 | Msa0223200:CDS | 35.0% | |
| AATGCGCAAACTAACAAGTA+GGG | + | chr2_1:72734470-72734489 | Msa0223200:CDS | 35.0% | |
| ! | TTTGATATGGTACCCTTTTC+TGG | - | chr2_1:72734743-72734762 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATCAAAG+AGG | + | chr2_1:72734744-72734763 | Msa0223200:CDS | 35.0% |
| ATGATGTCAACATAACAACC+AGG | - | chr2_1:72734809-72734828 | None:intergenic | 35.0% | |
| CATGAGTTAGATGTGTAGTT+AGG | + | chr2_1:72734833-72734852 | Msa0223200:intron | 35.0% | |
| TTCAAATTACCCACTTGGAT+AGG | + | chr2_1:72735113-72735132 | Msa0223200:intron | 35.0% | |
| AGTACGACTGTCATTCAAAT+TGG | - | chr2_1:72735228-72735247 | None:intergenic | 35.0% | |
| CCTGTAGACATATGAAACTA+AGG | - | chr2_1:72735485-72735504 | None:intergenic | 35.0% | |
| CCTTAGTTTCATATGTCTAC+AGG | + | chr2_1:72735482-72735501 | Msa0223200:intron | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | - | chr2_1:72735510-72735529 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | + | chr2_1:72735528-72735547 | Msa0223200:CDS | 35.0% | |
| ATATGGAAGTTCAAAGCTTG+GGG | + | chr2_1:72735530-72735549 | Msa0223200:CDS | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | + | chr2_1:72735558-72735577 | Msa0223200:CDS | 35.0% | |
| TAGTCATCAGAAGATATACC+AGG | - | chr2_1:72735584-72735603 | None:intergenic | 35.0% | |
| GTTCAGTAACCTGATTATTG+AGG | + | chr2_1:72735664-72735683 | Msa0223200:three_prime_UTR | 35.0% | |
| AACTTGTGTCCTCAATAATC+AGG | - | chr2_1:72735676-72735695 | None:intergenic | 35.0% | |
| CAAACTATGCAGATTCTATC+AGG | - | chr2_1:72735701-72735720 | None:intergenic | 35.0% | |
| AAGAGTCGCATATTAATGGT+TGG | - | chr2_1:72735895-72735914 | None:intergenic | 35.0% | |
| TAGGAAGAGTCGCATATTAA+TGG | - | chr2_1:72735899-72735918 | None:intergenic | 35.0% | |
| AATATGCGACTCTTCCTAAA+TGG | + | chr2_1:72735901-72735920 | Msa0223200:three_prime_UTR | 35.0% | |
| TAGTGTCATGTCATGTGTGT+TGG | + | chr2_1:72733221-72733240 | Msa0223200:intron | 40.0% | |
| ACAACATCTTGAGTACCATC+AGG | - | chr2_1:72733440-72733459 | None:intergenic | 40.0% | |
| TCAATACTGTGGTGCACAAT+TGG | - | chr2_1:72733597-72733616 | None:intergenic | 40.0% | |
| ! | ATTGTGCACCACAGTATTGA+AGG | + | chr2_1:72733597-72733616 | Msa0223200:intron | 40.0% |
| ! | AGGTCACGGATTGAGTAAAT+AGG | - | chr2_1:72733823-72733842 | None:intergenic | 40.0% |
| AGTTGTTAAGAGCAAGACCT+AGG | + | chr2_1:72733914-72733933 | Msa0223200:intron | 40.0% | |
| TTTCCTTACCTAATGAAGCC+TGG | - | chr2_1:72734303-72734322 | None:intergenic | 40.0% | |
| TTCAGAAAGCAGTTGGAAAC+TGG | + | chr2_1:72734387-72734406 | Msa0223200:intron | 40.0% | |
| !! | ACTGGTGCTGATATAGTTAC+AGG | + | chr2_1:72734405-72734424 | Msa0223200:CDS | 40.0% |
| !! | CTGGTGCTGATATAGTTACA+GGG | + | chr2_1:72734406-72734425 | Msa0223200:CDS | 40.0% |
| CTGATATAGTTACAGGGACT+CGG | + | chr2_1:72734412-72734431 | Msa0223200:CDS | 40.0% | |
| ATGCGCAAACTAACAAGTAG+GGG | + | chr2_1:72734471-72734490 | Msa0223200:CDS | 40.0% | |
| ! | CAGATTTGACAGGGTCTTTT+AGG | + | chr2_1:72734535-72734554 | Msa0223200:CDS | 40.0% |
| AATCTCAAACCAGTCAACAG+GGG | - | chr2_1:72734609-72734628 | None:intergenic | 40.0% | |
| CAATCTCAAACCAGTCAACA+GGG | - | chr2_1:72734610-72734629 | None:intergenic | 40.0% | |
| TCAATCTCAAACCAGTCAAC+AGG | - | chr2_1:72734611-72734630 | None:intergenic | 40.0% | |
| ATAGTACGAGCATCCAGAAA+AGG | + | chr2_1:72734727-72734746 | Msa0223200:CDS | 40.0% | |
| TAGTACGAGCATCCAGAAAA+GGG | + | chr2_1:72734728-72734747 | Msa0223200:CDS | 40.0% | |
| CTTGTAGAGTAGATGGCTTA+AGG | + | chr2_1:72735305-72735324 | Msa0223200:intron | 40.0% | |
| CAGAGTGATAAGCTTGAACA+GGG | - | chr2_1:72735439-72735458 | None:intergenic | 40.0% | |
| ACAGAGTGATAAGCTTGAAC+AGG | - | chr2_1:72735440-72735459 | None:intergenic | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+GGG | + | chr2_1:72735531-72735550 | Msa0223200:CDS | 40.0% | |
| GTCGCATATTAATGGTTGGT+TGG | - | chr2_1:72735891-72735910 | None:intergenic | 40.0% | |
| AACTCGCCGGAGTTAGTTAT+CGG | + | chr2_1:72732884-72732903 | Msa0223200:five_prime_UTR | 45.0% | |
| AACGAGTTGCTCACTGTTTC+CGG | - | chr2_1:72732913-72732932 | None:intergenic | 45.0% | |
| AAGAGCAAGACCTAGGAAGA+TGG | + | chr2_1:72733921-72733940 | Msa0223200:CDS | 45.0% | |
| AGAGCAAGACCTAGGAAGAT+GGG | + | chr2_1:72733922-72733941 | Msa0223200:CDS | 45.0% | |
| ! | AGACCTAGGAAGATGGGTTT+AGG | + | chr2_1:72733928-72733947 | Msa0223200:CDS | 45.0% |
| ACACCTAAACCCATCTTCCT+AGG | - | chr2_1:72733934-72733953 | None:intergenic | 45.0% | |
| GTAGGTACGGCCTATATTCA+TGG | + | chr2_1:72734017-72734036 | Msa0223200:intron | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | + | chr2_1:72734282-72734301 | Msa0223200:intron | 45.0% | |
| TTGCCAGGCTTCATTAGGTA+AGG | + | chr2_1:72734297-72734316 | Msa0223200:intron | 45.0% | |
| ! | ACAGGGACTCGGTATGTTAA+AGG | + | chr2_1:72734423-72734442 | Msa0223200:CDS | 45.0% |
| ! | GCACAAACACTTTTATGGCC+CGG | + | chr2_1:72734507-72734526 | Msa0223200:CDS | 45.0% |
| GGTACCATATCAAAGAGGTG+CGG | + | chr2_1:72734749-72734768 | Msa0223200:intron | 45.0% | |
| GAAACCGCACCTCTTTGATA+TGG | - | chr2_1:72734756-72734775 | None:intergenic | 45.0% | |
| TGTATGTGCTCTGTCTGTTC+AGG | + | chr2_1:72734984-72735003 | Msa0223200:intron | 45.0% | |
| ATGCAACAGCCTATCCAAGT+GGG | - | chr2_1:72735125-72735144 | None:intergenic | 45.0% | |
| TTGGATAGGCTGTTGCATGT+TGG | + | chr2_1:72735127-72735146 | Msa0223200:intron | 45.0% | |
| TCAGACAGTTTGCAAAGCAC+AGG | - | chr2_1:72735259-72735278 | None:intergenic | 45.0% | |
| ATGGAAGTTCAAAGCTTGGG+GGG | + | chr2_1:72735532-72735551 | Msa0223200:CDS | 45.0% | |
| TGTTGAATACCTGAAAGGCC+TGG | + | chr2_1:72735563-72735582 | Msa0223200:CDS | 45.0% | |
| GAAGATATACCAGGCCTTTC+AGG | - | chr2_1:72735575-72735594 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | + | chr2_1:72735756-72735775 | Msa0223200:intron | 5.0% |
| ! | TCTAAAGGGCTCTAGTGCAG+CGG | - | chr2_1:72733320-72733339 | None:intergenic | 50.0% |
| ! | GGGACTCGGTATGTTAAAGG+CGG | + | chr2_1:72734426-72734445 | Msa0223200:CDS | 50.0% |
| ACTCGGTATGTTAAAGGCGG+TGG | + | chr2_1:72734429-72734448 | Msa0223200:CDS | 50.0% | |
| GTTAAAGGCGGTGGTGTACA+TGG | + | chr2_1:72734438-72734457 | Msa0223200:CDS | 50.0% | |
| ! | CCTGTCAAATCTGAGACACC+GGG | - | chr2_1:72734528-72734547 | None:intergenic | 50.0% |
| ! | CCCTGTCAAATCTGAGACAC+CGG | - | chr2_1:72734529-72734548 | None:intergenic | 50.0% |
| CCGGTGTCTCAGATTTGACA+GGG | + | chr2_1:72734526-72734545 | Msa0223200:CDS | 50.0% | |
| TTTGTTGCTCCCCTGTTGAC+TGG | + | chr2_1:72734597-72734616 | Msa0223200:intron | 50.0% | |
| AGGTGCGGTTTCTTACGTGA+GGG | + | chr2_1:72734764-72734783 | Msa0223200:intron | 50.0% | |
| CATGCAACAGCCTATCCAAG+TGG | - | chr2_1:72735126-72735145 | None:intergenic | 50.0% | |
| CGGTGGCCGATAACTAACTC+CGG | - | chr2_1:72732893-72732912 | None:intergenic | 55.0% | |
| CGGAGTTAGTTATCGGCCAC+CGG | + | chr2_1:72732891-72732910 | Msa0223200:five_prime_UTR | 55.0% | |
| GAGTTGCTCACTGTTTCCGG+TGG | - | chr2_1:72732910-72732929 | None:intergenic | 55.0% | |
| !! | GTGGATGATGGGAGTCCTGA+TGG | + | chr2_1:72733422-72733441 | Msa0223200:intron | 55.0% |
| CATGGCATGAAGCATGCGTC+CGG | + | chr2_1:72734035-72734054 | Msa0223200:CDS | 55.0% | |
| AAGGCGGTGGTGTACATGGA+TGG | + | chr2_1:72734442-72734461 | Msa0223200:CDS | 55.0% | |
| CCCGGTGTCTCAGATTTGAC+AGG | + | chr2_1:72734525-72734544 | Msa0223200:CDS | 55.0% | |
| GAGGTGCGGTTTCTTACGTG+AGG | + | chr2_1:72734763-72734782 | Msa0223200:intron | 55.0% | |
| TCGCGCTGAACTCAACTCGC+CGG | + | chr2_1:72732871-72732890 | Msa0223200:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72732800 | 72735927 | 72732800 | ID=Msa0223200;Name=Msa0223200 |
| chr2_1 | mRNA | 72732800 | 72735927 | 72732800 | ID=Msa0223200-mRNA-1;Parent=Msa0223200;Name=Msa0223200-mRNA-1;_AED=0.25;_eAED=0.25;_QI=128|0.77|0.9|1|0.55|0.5|10|277|223 |
| chr2_1 | exon | 72732800 | 72732918 | 72732800 | ID=Msa0223200-mRNA-1:exon:21057;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72733038 | 72733156 | 72733038 | ID=Msa0223200-mRNA-1:exon:21058;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72733436 | 72733475 | 72733436 | ID=Msa0223200-mRNA-1:exon:21059;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72733916 | 72733949 | 72733916 | ID=Msa0223200-mRNA-1:exon:21060;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72734021 | 72734097 | 72734021 | ID=Msa0223200-mRNA-1:exon:21061;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72734288 | 72734313 | 72734288 | ID=Msa0223200-mRNA-1:exon:21062;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72734392 | 72734556 | 72734392 | ID=Msa0223200-mRNA-1:exon:21063;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72734651 | 72734765 | 72734651 | ID=Msa0223200-mRNA-1:exon:21064;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72735504 | 72735733 | 72735504 | ID=Msa0223200-mRNA-1:exon:21065;Parent=Msa0223200-mRNA-1 |
| chr2_1 | exon | 72735776 | 72735927 | 72735776 | ID=Msa0223200-mRNA-1:exon:21066;Parent=Msa0223200-mRNA-1 |
| chr2_1 | five_prime_UTR | 72732800 | 72732918 | 72732800 | ID=Msa0223200-mRNA-1:five_prime_utr;Parent=Msa0223200-mRNA-1 |
| chr2_1 | five_prime_UTR | 72733038 | 72733046 | 72733038 | ID=Msa0223200-mRNA-1:five_prime_utr;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72733047 | 72733156 | 72733047 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72733436 | 72733475 | 72733436 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72733916 | 72733949 | 72733916 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72734021 | 72734097 | 72734021 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72734288 | 72734313 | 72734288 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72734392 | 72734556 | 72734392 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72734651 | 72734765 | 72734651 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | CDS | 72735504 | 72735608 | 72735504 | ID=Msa0223200-mRNA-1:cds;Parent=Msa0223200-mRNA-1 |
| chr2_1 | three_prime_UTR | 72735609 | 72735733 | 72735609 | ID=Msa0223200-mRNA-1:three_prime_utr;Parent=Msa0223200-mRNA-1 |
| chr2_1 | three_prime_UTR | 72735776 | 72735927 | 72735776 | ID=Msa0223200-mRNA-1:three_prime_utr;Parent=Msa0223200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
