Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339660 | XP_024631934.2 | 89.712 | 243 | 5 | 2 | 1 | 223 | 1 | 243 | 1.45e-151 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339660 | sp|Q9LM93|DPM1_ARATH | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.74e-137 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033840 | Msa0339660 | 0.804238 | 2.378154e-49 | -8.615850e-47 |
| Msa0081610 | Msa0339660 | 0.814731 | 1.326672e-51 | -8.615850e-47 |
| Msa0173950 | Msa0339660 | 0.811541 | 6.648794e-51 | -8.615850e-47 |
| Msa0223200 | Msa0339660 | 0.968939 | 2.140412e-129 | -8.615850e-47 |
| Msa0264410 | Msa0339660 | 0.927777 | 7.321408e-92 | -8.615850e-47 |
| Msa0302300 | Msa0339660 | 0.976622 | 3.531332e-142 | -8.615850e-47 |
| Msa0339660 | Msa0535400 | -0.800559 | 1.361855e-48 | -8.615850e-47 |
| Msa0339660 | Msa0611060 | -0.808264 | 3.373385e-50 | -8.615850e-47 |
| Msa0339660 | Msa0613300 | -0.832830 | 7.557386e-56 | -8.615850e-47 |
| Msa0339660 | Msa0744640 | -0.803358 | 3.621264e-49 | -8.615850e-47 |
| Msa0339660 | Msa0841730 | -0.804456 | 2.141592e-49 | -8.615850e-47 |
| Msa0339660 | Msa1086490 | 0.802685 | 4.990102e-49 | -8.615850e-47 |
| Msa0339660 | Msa1086670 | 0.805410 | 1.353123e-49 | -8.615850e-47 |
| Msa0339660 | Msa1427190 | 0.949211 | 2.010651e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339660 | MtrunA17_Chr4g0046071 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 1.74e-152 | 423 |
| Msa0339660 | MtrunA17_Chr2g0328281 | 82.456 | 228 | 30 | 2 | 3 | 223 | 13 | 237 | 6.60e-134 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339660 | AT1G20575.1 | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.80e-138 | 387 |
Find 65 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAGTTGCTCACTGTTTC+CGG | 0.175480 | 2_4:+60922275 | None:intergenic |
| TCGTTCTTTGTAGACTTTAT+AGG | 0.189170 | 2_4:-60920547 | Msa0339660:intron |
| ATGAAGCCTGGCAAATATTT+TGG | 0.190219 | 2_4:+60920897 | None:intergenic |
| GAAGATATACCAGGCCTTTC+AGG | 0.213828 | 2_4:+60919611 | None:intergenic |
| CCAATTTCAGATTAAAATAA+TGG | 0.221772 | 2_4:-60922157 | Msa0339660:intron |
| TGAGCAGTTGCATTTCATTT+AGG | 0.291511 | 2_4:+60919274 | None:intergenic |
| CATAATGACAACAAAATTTC+CGG | 0.304728 | 2_4:+60921131 | None:intergenic |
| TAGGAAGAGTCGCATATTAA+TGG | 0.310873 | 2_4:+60919293 | None:intergenic |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | 2_4:-60919670 | Msa0339660:CDS |
| AATATTTGCCAGGCTTCATT+AGG | 0.338833 | 2_4:-60920893 | Msa0339660:intron |
| CAAACTATGCAGATTCTATC+AGG | 0.349018 | 2_4:+60919485 | None:intergenic |
| ACTGGTGCTGATATAGTTAC+AGG | 0.361148 | 2_4:-60920780 | Msa0339660:CDS |
| ACAGGGACTCGGTATGTTAA+AGG | 0.371437 | 2_4:-60920762 | Msa0339660:CDS |
| TTCAGAAAGCAGTTGGAAAC+TGG | 0.371824 | 2_4:-60920798 | Msa0339660:intron |
| ATGCTTCATGCCATGAATAT+AGG | 0.378458 | 2_4:+60921158 | None:intergenic |
| GTAGGTACGGCCTATATTCA+TGG | 0.398632 | 2_4:-60921168 | Msa0339660:intron |
| AGACCTAGGAAGATGGGTTT+AGG | 0.404208 | 2_4:-60921257 | Msa0339660:intron |
| GAAACCGCACCTCTTTGATA+TGG | 0.420349 | 2_4:+60920432 | None:intergenic |
| AACTTGTGTCCTCAATAATC+AGG | 0.426075 | 2_4:+60919510 | None:intergenic |
| TATATGGAAGTTCAAAGCTT+GGG | 0.426124 | 2_4:-60919654 | Msa0339660:CDS |
| TAAAGGATATGTCTTTCAAA+TGG | 0.429662 | 2_4:-60920486 | Msa0339660:CDS |
| TGTTGTAAAACAATTGCAAC+AGG | 0.432571 | 2_4:-60921731 | Msa0339660:intron |
| AACTCGCCGGAGTTAGTTAT+CGG | 0.450823 | 2_4:-60922301 | Msa0339660:five_prime_UTR |
| CTGCAGCCAAAATATTTGCC+AGG | 0.467710 | 2_4:-60920903 | Msa0339660:intron |
| CCCGGTGTCTCAGATTTGAC+AGG | 0.469407 | 2_4:-60920660 | Msa0339660:CDS |
| TTGAGTCGTTCATTATATGT+AGG | 0.474173 | 2_4:+60922090 | None:intergenic |
| CCCTGTCAAATCTGAGACAC+CGG | 0.478872 | 2_4:+60920659 | None:intergenic |
| ATAGTACGAGCATCCAGAAA+AGG | 0.481126 | 2_4:-60920458 | Msa0339660:CDS |
| ATTAGTTGCTGTGTTAGTAA+AGG | 0.488144 | 2_4:-60920503 | Msa0339660:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | 2_4:+60919676 | None:intergenic |
| ACACCTAAACCCATCTTCCT+AGG | 0.493673 | 2_4:+60921254 | None:intergenic |
| TAATGCGCAAACTAACAAGT+AGG | 0.495530 | 2_4:-60920716 | Msa0339660:CDS |
| GTTCAGTAACCTGATTATTG+AGG | 0.497826 | 2_4:-60919519 | Msa0339660:three_prime_UTR |
| CATGGCATGAAGCATGCGTC+CGG | 0.503198 | 2_4:-60921150 | Msa0339660:CDS |
| AAGAGCAAGACCTAGGAAGA+TGG | 0.504382 | 2_4:-60921264 | Msa0339660:CDS |
| GTTAAAGGCGGTGGTGTACA+TGG | 0.509663 | 2_4:-60920747 | Msa0339660:CDS |
| ACAACATCTTGAGTACCATC+AGG | 0.509872 | 2_4:+60921748 | None:intergenic |
| GTATATGGAAGTTCAAAGCT+TGG | 0.516811 | 2_4:-60919655 | Msa0339660:CDS |
| AATGCGCAAACTAACAAGTA+GGG | 0.525198 | 2_4:-60920715 | Msa0339660:CDS |
| CTGATATAGTTACAGGGACT+CGG | 0.525975 | 2_4:-60920773 | Msa0339660:CDS |
| TTTCCTTACCTAATGAAGCC+TGG | 0.533463 | 2_4:+60920885 | None:intergenic |
| AGAGCAAGACCTAGGAAGAT+GGG | 0.539880 | 2_4:-60921263 | Msa0339660:CDS |
| ACTCGGTATGTTAAAGGCGG+TGG | 0.541395 | 2_4:-60920756 | Msa0339660:CDS |
| GTCGCATATTAATGGTTGGT+TGG | 0.544771 | 2_4:+60919301 | None:intergenic |
| TAGTACGAGCATCCAGAAAA+GGG | 0.550858 | 2_4:-60920457 | Msa0339660:CDS |
| AAGGCGGTGGTGTACATGGA+TGG | 0.557858 | 2_4:-60920743 | Msa0339660:CDS |
| AGTTGTTAAGAGCAAGACCT+AGG | 0.559010 | 2_4:-60921271 | Msa0339660:CDS |
| GTGGATGATGGGAGTCCTGA+TGG | 0.562624 | 2_4:-60921763 | Msa0339660:intron |
| AAGAGTCGCATATTAATGGT+TGG | 0.565148 | 2_4:+60919297 | None:intergenic |
| TGTTGAATACCTGAAAGGCC+TGG | 0.581214 | 2_4:-60919620 | Msa0339660:CDS |
| CGGAGTTAGTTATCGGCCAC+CGG | 0.585776 | 2_4:-60922294 | Msa0339660:five_prime_UTR |
| ATATGGAAGTTCAAAGCTTG+GGG | 0.588590 | 2_4:-60919653 | Msa0339660:CDS |
| CTGGTGCTGATATAGTTACA+GGG | 0.596454 | 2_4:-60920779 | Msa0339660:CDS |
| TAGTCATCAGAAGATATACC+AGG | 0.607775 | 2_4:+60919602 | None:intergenic |
| TCGCGCTGAACTCAACTCGC+CGG | 0.608082 | 2_4:-60922314 | Msa0339660:five_prime_UTR |
| GAGATTGTTGAATACCTGAA+AGG | 0.609990 | 2_4:-60919625 | Msa0339660:CDS |
| CCGGTGTCTCAGATTTGACA+GGG | 0.611198 | 2_4:-60920659 | Msa0339660:CDS |
| CCTGTCAAATCTGAGACACC+GGG | 0.626189 | 2_4:+60920660 | None:intergenic |
| CGGTGGCCGATAACTAACTC+CGG | 0.633953 | 2_4:+60922295 | None:intergenic |
| ATGCGCAAACTAACAAGTAG+GGG | 0.654373 | 2_4:-60920714 | Msa0339660:CDS |
| GAGTTGCTCACTGTTTCCGG+TGG | 0.654634 | 2_4:+60922278 | None:intergenic |
| ATGGAAGTTCAAAGCTTGGG+GGG | 0.696439 | 2_4:-60919651 | Msa0339660:CDS |
| AAAAGGGTACCATATCAAAG+AGG | 0.698624 | 2_4:-60920441 | Msa0339660:intron |
| GGGACTCGGTATGTTAAAGG+CGG | 0.724417 | 2_4:-60920759 | Msa0339660:CDS |
| TATGGAAGTTCAAAGCTTGG+GGG | 0.735164 | 2_4:-60919652 | Msa0339660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATATTTTTCAATTTAA+GGG | - | chr2_4:60920213-60920232 | Msa0339660:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAACGT+AGG | + | chr2_4:60922234-60922253 | None:intergenic | 10.0% |
| !! | CGCATTAATTAAATTAAAAA+AGG | + | chr2_4:60919430-60919449 | None:intergenic | 15.0% |
| !!! | GATTGATATTTTTCAATTTA+AGG | - | chr2_4:60920212-60920231 | Msa0339660:intron | 15.0% |
| !! | TATAACAAGATATGTATAAA+TGG | + | chr2_4:60921370-60921389 | None:intergenic | 15.0% |
| !!! | TTACAAGTTTTATGAATAAA+AGG | + | chr2_4:60921430-60921449 | None:intergenic | 15.0% |
| !! | TATTCATAAAACTTGTAAAT+TGG | - | chr2_4:60921432-60921451 | Msa0339660:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr2_4:60922240-60922259 | Msa0339660:intron | 15.0% |
| !!! | TTTTGATGATTAATTGATTT+TGG | - | chr2_4:60922291-60922310 | Msa0339660:five_prime_UTR | 15.0% |
| !!! | CCATTATTTTAATCTGAAAT+TGG | + | chr2_4:60919516-60919535 | None:intergenic | 20.0% |
| !! | CCAATTTCAGATTAAAATAA+TGG | - | chr2_4:60919513-60919532 | Msa0339660:three_prime_UTR | 20.0% |
| !! | TAAAAATAAGGTAAAGAATG+AGG | + | chr2_4:60919612-60919631 | None:intergenic | 20.0% |
| !! | GAAGAGATTAAAGAAAATTA+CGG | + | chr2_4:60919643-60919662 | None:intergenic | 20.0% |
| !!! | TTGCTAAAGAAATATTTTGA+TGG | - | chr2_4:60920177-60920196 | Msa0339660:intron | 20.0% |
| !!! | GATTAATTAGTAAAAGTATC+AGG | + | chr2_4:60920449-60920468 | None:intergenic | 20.0% |
| !! | TAATTAATCTTTGATAGAAC+TGG | - | chr2_4:60920460-60920479 | Msa0339660:CDS | 20.0% |
| !!! | TATTATCTTTTACATTAACC+TGG | - | chr2_4:60921275-60921294 | Msa0339660:intron | 20.0% |
| !!! | GTTTGTCTTTTAATTTTTGT+AGG | - | chr2_4:60922203-60922222 | Msa0339660:intron | 20.0% |
| ! | AGATTAAAGAAAATTACGGA+AGG | + | chr2_4:60919639-60919658 | None:intergenic | 25.0% |
| ! | TGTCAAATAATTCTGATTGA+AGG | + | chr2_4:60919737-60919756 | None:intergenic | 25.0% |
| !!! | TATTAAATAGCAGCTCTAAA+GGG | + | chr2_4:60919819-60919838 | None:intergenic | 25.0% |
| !! | TTATTAAATAGCAGCTCTAA+AGG | + | chr2_4:60919820-60919839 | None:intergenic | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | - | chr2_4:60919888-60919907 | Msa0339660:intron | 25.0% |
| ! | ATAAGTAGTGCTTCATAAAT+AGG | - | chr2_4:60920007-60920026 | Msa0339660:intron | 25.0% |
| ! | TAGATCCCAAAAAATAGAAT+AGG | + | chr2_4:60920328-60920347 | None:intergenic | 25.0% |
| ! | TTATTCTAAATAACACGAAG+GGG | + | chr2_4:60920357-60920376 | None:intergenic | 25.0% |
| ! | GTTATTCTAAATAACACGAA+GGG | + | chr2_4:60920358-60920377 | None:intergenic | 25.0% |
| ! | AATAACCATGTTTATTCTTG+TGG | - | chr2_4:60920372-60920391 | Msa0339660:intron | 25.0% |
| ! | CATAATGACAACAAAATTTC+CGG | + | chr2_4:60920542-60920561 | None:intergenic | 25.0% |
| ! | AATGAACAGAATAACTTACA+TGG | + | chr2_4:60920582-60920601 | None:intergenic | 25.0% |
| !!! | ATAACGGATATTAAACAGTT+TGG | - | chr2_4:60921054-60921073 | Msa0339660:intron | 25.0% |
| ! | TAAAGGATATGTCTTTCAAA+TGG | - | chr2_4:60921184-60921203 | Msa0339660:intron | 25.0% |
| ! | AGTGGGTAATTTGAAAAAAA+TGG | + | chr2_4:60921595-60921614 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAATTACCCACT+TGG | - | chr2_4:60921595-60921614 | Msa0339660:intron | 25.0% |
| !! | TATGTTTTGCAAAAACTCAA+AGG | - | chr2_4:60922120-60922139 | Msa0339660:CDS | 25.0% |
| ! | AAAAACAGAAAACCAGAAAA+TGG | + | chr2_4:60922345-60922364 | None:intergenic | 25.0% |
| TTGAGTCGTTCATTATATGT+AGG | + | chr2_4:60919583-60919602 | None:intergenic | 30.0% | |
| !! | ACGGAAGGTGTTTAAAAATA+AGG | + | chr2_4:60919624-60919643 | None:intergenic | 30.0% |
| AAGTTATTGTTGTGGATGAT+GGG | - | chr2_4:60919896-60919915 | Msa0339660:intron | 30.0% | |
| TGTTGTAAAACAATTGCAAC+AGG | - | chr2_4:60919939-60919958 | Msa0339660:intron | 30.0% | |
| AAACAATTGCAACAGGTTTA+TGG | - | chr2_4:60919946-60919965 | Msa0339660:intron | 30.0% | |
| AAATATGACCTTCAATACTG+TGG | + | chr2_4:60920093-60920112 | None:intergenic | 30.0% | |
| TTTAGTCACTGAATTTGCAA+GGG | + | chr2_4:60920282-60920301 | None:intergenic | 30.0% | |
| ! | TTTTAGTCACTGAATTTGCA+AGG | + | chr2_4:60920283-60920302 | None:intergenic | 30.0% |
| CCAAAAAATAGAATAGGTCA+CGG | + | chr2_4:60920322-60920341 | None:intergenic | 30.0% | |
| !!! | CGTGACCTATTCTATTTTTT+GGG | - | chr2_4:60920320-60920339 | Msa0339660:intron | 30.0% |
| TATTCTAAATAACACGAAGG+GGG | + | chr2_4:60920356-60920375 | None:intergenic | 30.0% | |
| GGTTATTCTAAATAACACGA+AGG | + | chr2_4:60920359-60920378 | None:intergenic | 30.0% | |
| TGTAACCACAAGAATAAACA+TGG | + | chr2_4:60920380-60920399 | None:intergenic | 30.0% | |
| ATTTGATGTGGTCAATTTGT+AGG | - | chr2_4:60920484-60920503 | Msa0339660:CDS | 30.0% | |
| !! | CGGAAATTTTGTTGTCATTA+TGG | - | chr2_4:60920540-60920559 | Msa0339660:intron | 30.0% |
| GCAATAGAAAGTTAACAAAC+AGG | - | chr2_4:60920647-60920666 | Msa0339660:intron | 30.0% | |
| CAGAACAACAAAAACATATC+AGG | + | chr2_4:60920750-60920769 | None:intergenic | 30.0% | |
| ! | ACTGCTTTCTGAAAAAGAAA+AGG | + | chr2_4:60920865-60920884 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAGAAAGCAGT+TGG | - | chr2_4:60920865-60920884 | Msa0339660:intron | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | - | chr2_4:60920987-60921006 | Msa0339660:intron | 30.0% |
| TTAGGTATAGAGCTTGATAA+CGG | - | chr2_4:60921038-60921057 | Msa0339660:intron | 30.0% | |
| TCGTTCTTTGTAGACTTTAT+AGG | - | chr2_4:60921123-60921142 | Msa0339660:CDS | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+AGG | - | chr2_4:60921167-60921186 | Msa0339660:CDS | 30.0% | |
| ! | ATCGATTCAAAAGAATGCAA+TGG | + | chr2_4:60921522-60921541 | None:intergenic | 30.0% |
| TACAGCTTAGATTCAACATA+TGG | + | chr2_4:60921551-60921570 | None:intergenic | 30.0% | |
| GAAAATACTTGTAGAGTAGA+TGG | - | chr2_4:60921785-60921804 | Msa0339660:intron | 30.0% | |
| TTAAGGATTTGAATGCTTGT+TGG | - | chr2_4:60921809-60921828 | Msa0339660:intron | 30.0% | |
| ! | TTTATTGTGTTTGCTACATC+TGG | - | chr2_4:60921845-60921864 | Msa0339660:intron | 30.0% |
| TACTCTACAAGTATTTGAGA+AGG | + | chr2_4:60921876-60921895 | None:intergenic | 30.0% | |
| TCAAATACTTGTAGAGTAGA+TGG | - | chr2_4:60921878-60921897 | Msa0339660:intron | 30.0% | |
| ATATGAAACTAAGGTAAGCT+AGG | + | chr2_4:60921963-60921982 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | - | chr2_4:60922000-60922019 | Msa0339660:intron | 30.0% | |
| TATATGGAAGTTCAAAGCTT+GGG | - | chr2_4:60922016-60922035 | Msa0339660:intron | 30.0% | |
| !! | TTTGCTAACAGTTTTAACGT+AGG | + | chr2_4:60922271-60922290 | None:intergenic | 30.0% |
| ! | ACTTATGTTGATCCATTTTC+TGG | - | chr2_4:60922330-60922349 | Msa0339660:five_prime_UTR | 30.0% |
| GAAGTTATTGTTGTGGATGA+TGG | - | chr2_4:60919895-60919914 | Msa0339660:intron | 35.0% | |
| AACAGGTTTATGGAGAAGAT+CGG | - | chr2_4:60919956-60919975 | Msa0339660:intron | 35.0% | |
| !!! | CCGTGACCTATTCTATTTTT+TGG | - | chr2_4:60920319-60920338 | Msa0339660:intron | 35.0% |
| ATGTGGTCAATTTGTAGGTA+CGG | - | chr2_4:60920489-60920508 | Msa0339660:CDS | 35.0% | |
| ATGCTTCATGCCATGAATAT+AGG | + | chr2_4:60920515-60920534 | None:intergenic | 35.0% | |
| ACAAACAGGACTTGAATAGT+TGG | - | chr2_4:60920661-60920680 | Msa0339660:CDS | 35.0% | |
| ! | ATGAAGCCTGGCAAATATTT+TGG | + | chr2_4:60920776-60920795 | None:intergenic | 35.0% |
| AATATTTGCCAGGCTTCATT+AGG | - | chr2_4:60920777-60920796 | Msa0339660:CDS | 35.0% | |
| ! | AAAAGGCAAGAGTTAAGTTG+TGG | + | chr2_4:60920848-60920867 | None:intergenic | 35.0% |
| TAATGCGCAAACTAACAAGT+AGG | - | chr2_4:60920954-60920973 | Msa0339660:intron | 35.0% | |
| AATGCGCAAACTAACAAGTA+GGG | - | chr2_4:60920955-60920974 | Msa0339660:intron | 35.0% | |
| ! | TTTGATATGGTACCCTTTTC+TGG | + | chr2_4:60921228-60921247 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATCAAAG+AGG | - | chr2_4:60921229-60921248 | Msa0339660:intron | 35.0% |
| ATGATGTCAACATAACAACC+AGG | + | chr2_4:60921296-60921315 | None:intergenic | 35.0% | |
| CATGAGTTAGATGTGTAGTT+AGG | - | chr2_4:60921320-60921339 | Msa0339660:intron | 35.0% | |
| TTCAAATTACCCACTTGGAT+AGG | - | chr2_4:60921600-60921619 | Msa0339660:intron | 35.0% | |
| AGTACGACTGTCATTCAAAT+TGG | + | chr2_4:60921715-60921734 | None:intergenic | 35.0% | |
| CCTGTAGACATATGAAACTA+AGG | + | chr2_4:60921972-60921991 | None:intergenic | 35.0% | |
| CCTTAGTTTCATATGTCTAC+AGG | - | chr2_4:60921969-60921988 | Msa0339660:intron | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | + | chr2_4:60921997-60922016 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | - | chr2_4:60922015-60922034 | Msa0339660:intron | 35.0% | |
| ATATGGAAGTTCAAAGCTTG+GGG | - | chr2_4:60922017-60922036 | Msa0339660:intron | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | - | chr2_4:60922045-60922064 | Msa0339660:intron | 35.0% | |
| TAGTCATCAGAAGATATACC+AGG | + | chr2_4:60922071-60922090 | None:intergenic | 35.0% | |
| GTTCAGTAACCTGATTATTG+AGG | - | chr2_4:60922151-60922170 | Msa0339660:intron | 35.0% | |
| AACTTGTGTCCTCAATAATC+AGG | + | chr2_4:60922163-60922182 | None:intergenic | 35.0% | |
| CAAACTATGCAGATTCTATC+AGG | + | chr2_4:60922188-60922207 | None:intergenic | 35.0% | |
| AAGAGTCGCATATTAATGGT+TGG | + | chr2_4:60922376-60922395 | None:intergenic | 35.0% | |
| TAGGAAGAGTCGCATATTAA+TGG | + | chr2_4:60922380-60922399 | None:intergenic | 35.0% | |
| TAGTGTCATGTCATGTGTGT+TGG | - | chr2_4:60919706-60919725 | Msa0339660:intron | 40.0% | |
| ACAACATCTTGAGTACCATC+AGG | + | chr2_4:60919925-60919944 | None:intergenic | 40.0% | |
| TCAATACTGTGGTGCACAAT+TGG | + | chr2_4:60920082-60920101 | None:intergenic | 40.0% | |
| ! | ATTGTGCACCACAGTATTGA+AGG | - | chr2_4:60920082-60920101 | Msa0339660:intron | 40.0% |
| ! | AGGTCACGGATTGAGTAAAT+AGG | + | chr2_4:60920308-60920327 | None:intergenic | 40.0% |
| AGTTGTTAAGAGCAAGACCT+AGG | - | chr2_4:60920399-60920418 | Msa0339660:intron | 40.0% | |
| GATAGAACTGGCATTTGATG+TGG | - | chr2_4:60920472-60920491 | Msa0339660:CDS | 40.0% | |
| TTTCCTTACCTAATGAAGCC+TGG | + | chr2_4:60920788-60920807 | None:intergenic | 40.0% | |
| TTCAGAAAGCAGTTGGAAAC+TGG | - | chr2_4:60920872-60920891 | Msa0339660:intron | 40.0% | |
| !! | ACTGGTGCTGATATAGTTAC+AGG | - | chr2_4:60920890-60920909 | Msa0339660:intron | 40.0% |
| !! | CTGGTGCTGATATAGTTACA+GGG | - | chr2_4:60920891-60920910 | Msa0339660:intron | 40.0% |
| CTGATATAGTTACAGGGACT+CGG | - | chr2_4:60920897-60920916 | Msa0339660:CDS | 40.0% | |
| ATGCGCAAACTAACAAGTAG+GGG | - | chr2_4:60920956-60920975 | Msa0339660:intron | 40.0% | |
| ! | CAGATTTGACAGGGTCTTTT+AGG | - | chr2_4:60921020-60921039 | Msa0339660:intron | 40.0% |
| AATCTCAAACCAGTCAACAG+GGG | + | chr2_4:60921094-60921113 | None:intergenic | 40.0% | |
| CAATCTCAAACCAGTCAACA+GGG | + | chr2_4:60921095-60921114 | None:intergenic | 40.0% | |
| TCAATCTCAAACCAGTCAAC+AGG | + | chr2_4:60921096-60921115 | None:intergenic | 40.0% | |
| ATAGTACGAGCATCCAGAAA+AGG | - | chr2_4:60921212-60921231 | Msa0339660:intron | 40.0% | |
| TAGTACGAGCATCCAGAAAA+GGG | - | chr2_4:60921213-60921232 | Msa0339660:intron | 40.0% | |
| CTTGTAGAGTAGATGGCTTA+AGG | - | chr2_4:60921792-60921811 | Msa0339660:intron | 40.0% | |
| CAGAGTGATAAGCTTGAACA+GGG | + | chr2_4:60921926-60921945 | None:intergenic | 40.0% | |
| ACAGAGTGATAAGCTTGAAC+AGG | + | chr2_4:60921927-60921946 | None:intergenic | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+GGG | - | chr2_4:60922018-60922037 | Msa0339660:intron | 40.0% | |
| GTCGCATATTAATGGTTGGT+TGG | + | chr2_4:60922372-60922391 | None:intergenic | 40.0% | |
| AACTCGCCGGAGTTAGTTAT+CGG | - | chr2_4:60919369-60919388 | Msa0339660:three_prime_UTR | 45.0% | |
| AACGAGTTGCTCACTGTTTC+CGG | + | chr2_4:60919398-60919417 | None:intergenic | 45.0% | |
| AAGAGCAAGACCTAGGAAGA+TGG | - | chr2_4:60920406-60920425 | Msa0339660:intron | 45.0% | |
| AGAGCAAGACCTAGGAAGAT+GGG | - | chr2_4:60920407-60920426 | Msa0339660:intron | 45.0% | |
| ! | AGACCTAGGAAGATGGGTTT+AGG | - | chr2_4:60920413-60920432 | Msa0339660:intron | 45.0% |
| ACACCTAAACCCATCTTCCT+AGG | + | chr2_4:60920419-60920438 | None:intergenic | 45.0% | |
| GTAGGTACGGCCTATATTCA+TGG | - | chr2_4:60920502-60920521 | Msa0339660:CDS | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | - | chr2_4:60920767-60920786 | Msa0339660:CDS | 45.0% | |
| TTGCCAGGCTTCATTAGGTA+AGG | - | chr2_4:60920782-60920801 | Msa0339660:CDS | 45.0% | |
| ! | ACAGGGACTCGGTATGTTAA+AGG | - | chr2_4:60920908-60920927 | Msa0339660:intron | 45.0% |
| ! | GCACAAACACTTTTATGGCC+CGG | - | chr2_4:60920992-60921011 | Msa0339660:intron | 45.0% |
| GGTACCATATCAAAGAGGTG+CGG | - | chr2_4:60921234-60921253 | Msa0339660:intron | 45.0% | |
| GAAACCGCACCTCTTTGATA+TGG | + | chr2_4:60921241-60921260 | None:intergenic | 45.0% | |
| GTGCGGTTTCTTATTCGTGA+GGG | - | chr2_4:60921251-60921270 | Msa0339660:intron | 45.0% | |
| TGTATGTGCTCTGTCTGTTC+AGG | - | chr2_4:60921471-60921490 | Msa0339660:intron | 45.0% | |
| ATGCAACAGCCTATCCAAGT+GGG | + | chr2_4:60921612-60921631 | None:intergenic | 45.0% | |
| TTGGATAGGCTGTTGCATGT+TGG | - | chr2_4:60921614-60921633 | Msa0339660:intron | 45.0% | |
| TCAGACAGTTTGCAAAGCAC+AGG | + | chr2_4:60921746-60921765 | None:intergenic | 45.0% | |
| ATGGAAGTTCAAAGCTTGGG+GGG | - | chr2_4:60922019-60922038 | Msa0339660:intron | 45.0% | |
| TGTTGAATACCTGAAAGGCC+TGG | - | chr2_4:60922050-60922069 | Msa0339660:intron | 45.0% | |
| GAAGATATACCAGGCCTTTC+AGG | + | chr2_4:60922062-60922081 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr2_4:60922237-60922256 | Msa0339660:intron | 5.0% |
| ! | TCTAAAGGGCTCTAGTGCAG+CGG | + | chr2_4:60919805-60919824 | None:intergenic | 50.0% |
| ! | GGGACTCGGTATGTTAAAGG+CGG | - | chr2_4:60920911-60920930 | Msa0339660:intron | 50.0% |
| ACTCGGTATGTTAAAGGCGG+TGG | - | chr2_4:60920914-60920933 | Msa0339660:intron | 50.0% | |
| GTTAAAGGCGGTGGTGTACA+TGG | - | chr2_4:60920923-60920942 | Msa0339660:intron | 50.0% | |
| ! | CCTGTCAAATCTGAGACACC+GGG | + | chr2_4:60921013-60921032 | None:intergenic | 50.0% |
| ! | CCCTGTCAAATCTGAGACAC+CGG | + | chr2_4:60921014-60921033 | None:intergenic | 50.0% |
| CCGGTGTCTCAGATTTGACA+GGG | - | chr2_4:60921011-60921030 | Msa0339660:intron | 50.0% | |
| TTTGTTGCTCCCCTGTTGAC+TGG | - | chr2_4:60921082-60921101 | Msa0339660:intron | 50.0% | |
| GGTGCGGTTTCTTATTCGTG+AGG | - | chr2_4:60921250-60921269 | Msa0339660:intron | 50.0% | |
| CATGCAACAGCCTATCCAAG+TGG | + | chr2_4:60921613-60921632 | None:intergenic | 50.0% | |
| CGGTGGCCGATAACTAACTC+CGG | + | chr2_4:60919378-60919397 | None:intergenic | 55.0% | |
| CGGAGTTAGTTATCGGCCAC+CGG | - | chr2_4:60919376-60919395 | Msa0339660:three_prime_UTR | 55.0% | |
| GAGTTGCTCACTGTTTCCGG+TGG | + | chr2_4:60919395-60919414 | None:intergenic | 55.0% | |
| !! | GTGGATGATGGGAGTCCTGA+TGG | - | chr2_4:60919907-60919926 | Msa0339660:intron | 55.0% |
| CATGGCATGAAGCATGCGTC+CGG | - | chr2_4:60920520-60920539 | Msa0339660:CDS | 55.0% | |
| AAGGCGGTGGTGTACATGGA+TGG | - | chr2_4:60920927-60920946 | Msa0339660:intron | 55.0% | |
| CCCGGTGTCTCAGATTTGAC+AGG | - | chr2_4:60921010-60921029 | Msa0339660:intron | 55.0% | |
| TCGCGCTGAACTCAACTCGC+CGG | - | chr2_4:60919356-60919375 | Msa0339660:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60919285 | 60922407 | 60919285 | ID=Msa0339660;Name=Msa0339660 |
| chr2_4 | mRNA | 60919285 | 60922407 | 60919285 | ID=Msa0339660-mRNA-1;Parent=Msa0339660;Name=Msa0339660-mRNA-1;_AED=0.24;_eAED=0.24;_QI=128|0.77|0.9|1|0.55|0.5|10|276|223 |
| chr2_4 | exon | 60919285 | 60919435 | 60919285 | ID=Msa0339660-mRNA-1:exon:19022;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60919472 | 60919701 | 60919472 | ID=Msa0339660-mRNA-1:exon:19021;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60920442 | 60920556 | 60920442 | ID=Msa0339660-mRNA-1:exon:19020;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60920651 | 60920815 | 60920651 | ID=Msa0339660-mRNA-1:exon:19019;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60920894 | 60920919 | 60920894 | ID=Msa0339660-mRNA-1:exon:19018;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60921110 | 60921186 | 60921110 | ID=Msa0339660-mRNA-1:exon:19017;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60921258 | 60921291 | 60921258 | ID=Msa0339660-mRNA-1:exon:19016;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60921732 | 60921771 | 60921732 | ID=Msa0339660-mRNA-1:exon:19015;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60922051 | 60922169 | 60922051 | ID=Msa0339660-mRNA-1:exon:19014;Parent=Msa0339660-mRNA-1 |
| chr2_4 | exon | 60922289 | 60922407 | 60922289 | ID=Msa0339660-mRNA-1:exon:19013;Parent=Msa0339660-mRNA-1 |
| chr2_4 | five_prime_UTR | 60922289 | 60922407 | 60922289 | ID=Msa0339660-mRNA-1:five_prime_utr;Parent=Msa0339660-mRNA-1 |
| chr2_4 | five_prime_UTR | 60922161 | 60922169 | 60922161 | ID=Msa0339660-mRNA-1:five_prime_utr;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60922051 | 60922160 | 60922051 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60921732 | 60921771 | 60921732 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60921258 | 60921291 | 60921258 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60921110 | 60921186 | 60921110 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60920894 | 60920919 | 60920894 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60920651 | 60920815 | 60920651 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60920442 | 60920556 | 60920442 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | CDS | 60919597 | 60919701 | 60919597 | ID=Msa0339660-mRNA-1:cds;Parent=Msa0339660-mRNA-1 |
| chr2_4 | three_prime_UTR | 60919472 | 60919596 | 60919472 | ID=Msa0339660-mRNA-1:three_prime_utr;Parent=Msa0339660-mRNA-1 |
| chr2_4 | three_prime_UTR | 60919285 | 60919435 | 60919285 | ID=Msa0339660-mRNA-1:three_prime_utr;Parent=Msa0339660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
