Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302300 | XP_024631934.2 | 89.712 | 243 | 5 | 2 | 1 | 223 | 1 | 243 | 1.45e-151 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302300 | sp|Q9LM93|DPM1_ARATH | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.74e-137 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302300 | A0A396IBZ2 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 9.05e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017300 | Msa0302300 | 0.802114 | 6.540203e-49 | -8.615850e-47 |
| Msa0033840 | Msa0302300 | 0.816859 | 4.448964e-52 | -8.615850e-47 |
| Msa0081610 | Msa0302300 | 0.829826 | 4.143053e-55 | -8.615850e-47 |
| Msa0138990 | Msa0302300 | 0.800514 | 1.390980e-48 | -8.615850e-47 |
| Msa0173950 | Msa0302300 | 0.825052 | 5.783123e-54 | -8.615850e-47 |
| Msa0223200 | Msa0302300 | 0.960281 | 2.219241e-118 | -8.615850e-47 |
| Msa0264410 | Msa0302300 | 0.912796 | 1.290801e-83 | -8.615850e-47 |
| Msa0302300 | Msa0339660 | 0.976622 | 3.531332e-142 | -8.615850e-47 |
| Msa0302300 | Msa0389080 | 0.804900 | 1.729790e-49 | -8.615850e-47 |
| Msa0302300 | Msa0405550 | 0.802409 | 5.687565e-49 | -8.615850e-47 |
| Msa0302300 | Msa0535400 | -0.804374 | 2.227027e-49 | -8.615850e-47 |
| Msa0302300 | Msa0550990 | 0.805764 | 1.140174e-49 | -8.615850e-47 |
| Msa0302300 | Msa0606350 | 0.802375 | 5.780047e-49 | -8.615850e-47 |
| Msa0302300 | Msa0611060 | -0.808994 | 2.355516e-50 | -8.615850e-47 |
| Msa0302300 | Msa0613300 | -0.821384 | 4.154940e-53 | -8.615850e-47 |
| Msa0302300 | Msa0841730 | -0.800496 | 1.402237e-48 | -8.615850e-47 |
| Msa0302300 | Msa0864820 | 0.804162 | 2.465567e-49 | -8.615850e-47 |
| Msa0302300 | Msa1086490 | 0.807130 | 5.875663e-50 | -8.615850e-47 |
| Msa0302300 | Msa1086670 | 0.814727 | 1.329643e-51 | -8.615850e-47 |
| Msa0302300 | Msa1273620 | 0.802725 | 4.894838e-49 | -8.615850e-47 |
| Msa0302300 | Msa1311600 | 0.803596 | 3.232585e-49 | -8.615850e-47 |
| Msa0302300 | Msa1342960 | 0.802529 | 5.373635e-49 | -8.615850e-47 |
| Msa0302300 | Msa1427190 | 0.940491 | 2.130123e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302300 | MtrunA17_Chr4g0046071 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 1.74e-152 | 423 |
| Msa0302300 | MtrunA17_Chr2g0328281 | 82.456 | 228 | 30 | 2 | 3 | 223 | 13 | 237 | 6.60e-134 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302300 | AT1G20575.1 | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.80e-138 | 387 |
Find 66 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAGTTGCTCACTGTTTC+CGG | 0.175480 | 2_3:+59091487 | None:intergenic |
| TCGTTCTTTGTAGACTTTAT+AGG | 0.189170 | 2_3:-59089761 | Msa0302300:intron |
| ATGAAGCCTGGCAAATATTT+TGG | 0.190219 | 2_3:+59090111 | None:intergenic |
| GAAGATATACCAGGCCTTTC+AGG | 0.213828 | 2_3:+59088827 | None:intergenic |
| CCAATTTCAGATTAAAATAA+TGG | 0.221772 | 2_3:-59091368 | Msa0302300:intron |
| GAGCAGTTGCATTTCCATTT+AGG | 0.258096 | 2_3:+59088486 | None:intergenic |
| CATAATGACAACAAAATTTC+CGG | 0.304728 | 2_3:+59090345 | None:intergenic |
| TAGGAAGAGTCGCATATTAA+TGG | 0.310873 | 2_3:+59088505 | None:intergenic |
| AATATGCGACTCTTCCTAAA+TGG | 0.322673 | 2_3:-59088500 | Msa0302300:three_prime_UTR |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | 2_3:-59088886 | Msa0302300:CDS |
| AATATTTGCCAGGCTTCATT+AGG | 0.338833 | 2_3:-59090107 | Msa0302300:intron |
| CAAACTATGCAGATTCTATC+AGG | 0.349018 | 2_3:+59088701 | None:intergenic |
| ACTGGTGCTGATATAGTTAC+AGG | 0.361148 | 2_3:-59089994 | Msa0302300:CDS |
| ACAGGGACTCGGTATGTTAA+AGG | 0.371437 | 2_3:-59089976 | Msa0302300:CDS |
| TTCAGAAAGCAGTTGGAAAC+TGG | 0.371824 | 2_3:-59090012 | Msa0302300:intron |
| ATGCTTCATGCCATGAATAT+AGG | 0.378458 | 2_3:+59090372 | None:intergenic |
| GTAGGTACGGCCTATATTCA+TGG | 0.398632 | 2_3:-59090382 | Msa0302300:intron |
| AGACCTAGGAAGATGGGTTT+AGG | 0.404208 | 2_3:-59090471 | Msa0302300:intron |
| AACTTGTGTCCTCAATAATC+AGG | 0.426075 | 2_3:+59088726 | None:intergenic |
| TATATGGAAGTTCAAAGCTT+GGG | 0.426124 | 2_3:-59088870 | Msa0302300:CDS |
| TAAAGGATATGTCTTTCAAA+TGG | 0.429662 | 2_3:-59089700 | Msa0302300:CDS |
| TGTTGTAAAACAATTGCAAC+AGG | 0.432571 | 2_3:-59090942 | Msa0302300:intron |
| AACTCGCCGGAGTTAGTTAT+CGG | 0.450823 | 2_3:-59091513 | Msa0302300:five_prime_UTR |
| GAAACCGCACCTCTTTGATA+TGG | 0.453561 | 2_3:+59089646 | None:intergenic |
| CTGCAGCCAAAATATTTGCC+AGG | 0.467710 | 2_3:-59090117 | Msa0302300:intron |
| CCCGGTGTCTCAGATTTGAC+AGG | 0.469407 | 2_3:-59089874 | Msa0302300:CDS |
| TTGAGTCGTTCATTATATGT+AGG | 0.474173 | 2_3:+59091301 | None:intergenic |
| CCCTGTCAAATCTGAGACAC+CGG | 0.478872 | 2_3:+59089873 | None:intergenic |
| ATAGTACGAGCATCCAGAAA+AGG | 0.481126 | 2_3:-59089672 | Msa0302300:CDS |
| ATTAGTTGCTGTGTTAGTAA+AGG | 0.488144 | 2_3:-59089717 | Msa0302300:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | 2_3:+59088892 | None:intergenic |
| ACACCTAAACCCATCTTCCT+AGG | 0.493673 | 2_3:+59090468 | None:intergenic |
| TAATGCGCAAACTAACAAGT+AGG | 0.495530 | 2_3:-59089930 | Msa0302300:CDS |
| GTTCAGTAACCTGATTATTG+AGG | 0.497826 | 2_3:-59088735 | Msa0302300:three_prime_UTR |
| CATGGCATGAAGCATGCGTC+CGG | 0.503198 | 2_3:-59090364 | Msa0302300:CDS |
| AAGAGCAAGACCTAGGAAGA+TGG | 0.504382 | 2_3:-59090478 | Msa0302300:CDS |
| GTTAAAGGCGGTGGTGTACA+TGG | 0.509663 | 2_3:-59089961 | Msa0302300:CDS |
| ACAACATCTTGAGTACCATC+AGG | 0.509872 | 2_3:+59090959 | None:intergenic |
| GTATATGGAAGTTCAAAGCT+TGG | 0.516811 | 2_3:-59088871 | Msa0302300:CDS |
| AATGCGCAAACTAACAAGTA+GGG | 0.525198 | 2_3:-59089929 | Msa0302300:CDS |
| CTGATATAGTTACAGGGACT+CGG | 0.525975 | 2_3:-59089987 | Msa0302300:CDS |
| TTTCCTTACCTAATGAAGCC+TGG | 0.533463 | 2_3:+59090099 | None:intergenic |
| AGAGCAAGACCTAGGAAGAT+GGG | 0.539880 | 2_3:-59090477 | Msa0302300:CDS |
| ACTCGGTATGTTAAAGGCGG+TGG | 0.541395 | 2_3:-59089970 | Msa0302300:CDS |
| GTCGCATATTAATGGTTGGT+TGG | 0.544771 | 2_3:+59088513 | None:intergenic |
| TAGTACGAGCATCCAGAAAA+GGG | 0.550858 | 2_3:-59089671 | Msa0302300:CDS |
| AAGGCGGTGGTGTACATGGA+TGG | 0.557858 | 2_3:-59089957 | Msa0302300:CDS |
| AGTTGTTAAGAGCAAGACCT+AGG | 0.559010 | 2_3:-59090485 | Msa0302300:CDS |
| GTGGATGATGGGAGTCCTGA+TGG | 0.562624 | 2_3:-59090974 | Msa0302300:intron |
| AAGAGTCGCATATTAATGGT+TGG | 0.565148 | 2_3:+59088509 | None:intergenic |
| TGTTGAATACCTGAAAGGCC+TGG | 0.581214 | 2_3:-59088836 | Msa0302300:CDS |
| CGGAGTTAGTTATCGGCCAC+CGG | 0.585776 | 2_3:-59091506 | Msa0302300:five_prime_UTR |
| ATATGGAAGTTCAAAGCTTG+GGG | 0.588590 | 2_3:-59088869 | Msa0302300:CDS |
| CTGGTGCTGATATAGTTACA+GGG | 0.596454 | 2_3:-59089993 | Msa0302300:CDS |
| TAGTCATCAGAAGATATACC+AGG | 0.607775 | 2_3:+59088818 | None:intergenic |
| TCGCGCTGAACTCAACTCGC+CGG | 0.608082 | 2_3:-59091526 | Msa0302300:five_prime_UTR |
| GAGATTGTTGAATACCTGAA+AGG | 0.609990 | 2_3:-59088841 | Msa0302300:CDS |
| CCGGTGTCTCAGATTTGACA+GGG | 0.611198 | 2_3:-59089873 | Msa0302300:CDS |
| CCTGTCAAATCTGAGACACC+GGG | 0.626189 | 2_3:+59089874 | None:intergenic |
| CGGTGGCCGATAACTAACTC+CGG | 0.633953 | 2_3:+59091507 | None:intergenic |
| ATGCGCAAACTAACAAGTAG+GGG | 0.654373 | 2_3:-59089928 | Msa0302300:CDS |
| GAGTTGCTCACTGTTTCCGG+TGG | 0.654634 | 2_3:+59091490 | None:intergenic |
| ATGGAAGTTCAAAGCTTGGG+GGG | 0.696439 | 2_3:-59088867 | Msa0302300:CDS |
| AAAAGGGTACCATATCAAAG+AGG | 0.698624 | 2_3:-59089655 | Msa0302300:intron |
| GGGACTCGGTATGTTAAAGG+CGG | 0.724417 | 2_3:-59089973 | Msa0302300:CDS |
| TATGGAAGTTCAAAGCTTGG+GGG | 0.735164 | 2_3:-59088868 | Msa0302300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCATTAAATTAAATTAAAAA+AGG | + | chr2_3:59088641-59088660 | None:intergenic | 10.0% |
| !!! | ATTGATATTTTTCAATTTAA+GGG | - | chr2_3:59089422-59089441 | Msa0302300:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAACGT+AGG | + | chr2_3:59091441-59091460 | None:intergenic | 10.0% |
| !!! | GATTGATATTTTTCAATTTA+AGG | - | chr2_3:59089421-59089440 | Msa0302300:intron | 15.0% |
| !! | TAATTAATCTTTGATAAAAC+TGG | - | chr2_3:59089669-59089688 | Msa0302300:CDS | 15.0% |
| !! | TATAACAAGATATGTATAAA+TGG | + | chr2_3:59090577-59090596 | None:intergenic | 15.0% |
| !!! | TTACAAGTTTTATGAATAAA+AGG | + | chr2_3:59090637-59090656 | None:intergenic | 15.0% |
| !! | TATTCATAAAACTTGTAAAT+TGG | - | chr2_3:59090639-59090658 | Msa0302300:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr2_3:59091451-59091470 | Msa0302300:intron | 15.0% |
| !!! | TTTTGATGATTAATTGATTT+TGG | - | chr2_3:59091502-59091521 | Msa0302300:five_prime_UTR | 15.0% |
| !!! | CCATTATTTTAATCTGAAAT+TGG | + | chr2_3:59088728-59088747 | None:intergenic | 20.0% |
| !! | CCAATTTCAGATTAAAATAA+TGG | - | chr2_3:59088725-59088744 | Msa0302300:three_prime_UTR | 20.0% |
| !! | TAAAAATAAGGTAAAGAATG+AGG | + | chr2_3:59088824-59088843 | None:intergenic | 20.0% |
| !! | GAAGAGATTAAAGAAAATTA+CGG | + | chr2_3:59088855-59088874 | None:intergenic | 20.0% |
| !!! | TTGCTAAAGAAATATTTTGA+TGG | - | chr2_3:59089386-59089405 | Msa0302300:intron | 20.0% |
| !! | TTATTCTAAATAATACGAAG+GGG | + | chr2_3:59089566-59089585 | None:intergenic | 20.0% |
| !! | GTTATTCTAAATAATACGAA+GGG | + | chr2_3:59089567-59089586 | None:intergenic | 20.0% |
| !!! | GATTAATTAGTAAAAGTATC+AGG | + | chr2_3:59089658-59089677 | None:intergenic | 20.0% |
| !!! | TATTATCTTTTACATTAACC+TGG | - | chr2_3:59090482-59090501 | Msa0302300:CDS | 20.0% |
| !!! | GTTTGTCTTTTAATTTTTGT+AGG | - | chr2_3:59091410-59091429 | Msa0302300:intron | 20.0% |
| ! | AGATTAAAGAAAATTACGGA+AGG | + | chr2_3:59088851-59088870 | None:intergenic | 25.0% |
| ! | TGTCAAATAATTCTGATTGA+AGG | + | chr2_3:59088949-59088968 | None:intergenic | 25.0% |
| !!! | TATTAAATAGCAGCTCTAAA+GGG | + | chr2_3:59089031-59089050 | None:intergenic | 25.0% |
| !! | TTATTAAATAGCAGCTCTAA+AGG | + | chr2_3:59089032-59089051 | None:intergenic | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | - | chr2_3:59089100-59089119 | Msa0302300:intron | 25.0% |
| ! | ATAAGTAGTGCTTCATAAAT+AGG | - | chr2_3:59089219-59089238 | Msa0302300:intron | 25.0% |
| ! | TAGATCCCAAAAAATAGAAT+AGG | + | chr2_3:59089537-59089556 | None:intergenic | 25.0% |
| ! | TATTCTAAATAATACGAAGG+GGG | + | chr2_3:59089565-59089584 | None:intergenic | 25.0% |
| ! | GGTTATTCTAAATAATACGA+AGG | + | chr2_3:59089568-59089587 | None:intergenic | 25.0% |
| ! | AATAACCATGTTTATTCTTG+TGG | - | chr2_3:59089581-59089600 | Msa0302300:intron | 25.0% |
| ! | CATAATGACAACAAAATTTC+CGG | + | chr2_3:59089751-59089770 | None:intergenic | 25.0% |
| ! | AATGAACAGAATAACTTACA+TGG | + | chr2_3:59089791-59089810 | None:intergenic | 25.0% |
| !!! | ATAACGGATATTAAACAGTT+TGG | - | chr2_3:59090263-59090282 | Msa0302300:intron | 25.0% |
| ! | TAAAGGATATGTCTTTCAAA+TGG | - | chr2_3:59090393-59090412 | Msa0302300:intron | 25.0% |
| ! | AGTGGGTAATTTGAAAAAAA+TGG | + | chr2_3:59090802-59090821 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAATTACCCACT+TGG | - | chr2_3:59090802-59090821 | Msa0302300:intron | 25.0% |
| !! | TATGTTTTGCAAAAACTCAA+AGG | - | chr2_3:59091327-59091346 | Msa0302300:CDS | 25.0% |
| ! | AAAAACAGAAAACCAGAAAA+TGG | + | chr2_3:59091556-59091575 | None:intergenic | 25.0% |
| TTGAGTCGTTCATTATATGT+AGG | + | chr2_3:59088795-59088814 | None:intergenic | 30.0% | |
| !! | ACGGAAGGTGTTTAAAAATA+AGG | + | chr2_3:59088836-59088855 | None:intergenic | 30.0% |
| AAGTTATTGTTGTGGATGAT+GGG | - | chr2_3:59089108-59089127 | Msa0302300:intron | 30.0% | |
| TGTTGTAAAACAATTGCAAC+AGG | - | chr2_3:59089151-59089170 | Msa0302300:intron | 30.0% | |
| AAACAATTGCAACAGGTTTA+TGG | - | chr2_3:59089158-59089177 | Msa0302300:intron | 30.0% | |
| AAATATGACCTTCAATACTG+TGG | + | chr2_3:59089305-59089324 | None:intergenic | 30.0% | |
| TTTAGTCACTGAATTTGCAA+GGG | + | chr2_3:59089491-59089510 | None:intergenic | 30.0% | |
| ! | TTTTAGTCACTGAATTTGCA+AGG | + | chr2_3:59089492-59089511 | None:intergenic | 30.0% |
| CCAAAAAATAGAATAGGTCA+CGG | + | chr2_3:59089531-59089550 | None:intergenic | 30.0% | |
| !!! | CGTGACCTATTCTATTTTTT+GGG | - | chr2_3:59089529-59089548 | Msa0302300:intron | 30.0% |
| TGTAACCACAAGAATAAACA+TGG | + | chr2_3:59089589-59089608 | None:intergenic | 30.0% | |
| ATTTGATGTGGTCAATTTGT+AGG | - | chr2_3:59089693-59089712 | Msa0302300:CDS | 30.0% | |
| !! | CGGAAATTTTGTTGTCATTA+TGG | - | chr2_3:59089749-59089768 | Msa0302300:CDS | 30.0% |
| GCAATAGAAAGTTAACAAAC+AGG | - | chr2_3:59089856-59089875 | Msa0302300:intron | 30.0% | |
| CAGAACAACAAAAACATATC+AGG | + | chr2_3:59089959-59089978 | None:intergenic | 30.0% | |
| ! | ACTGCTTTCTGAAAAAGAAA+AGG | + | chr2_3:59090074-59090093 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAGAAAGCAGT+TGG | - | chr2_3:59090074-59090093 | Msa0302300:intron | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | - | chr2_3:59090196-59090215 | Msa0302300:intron | 30.0% |
| TTAGGTATAGAGCTTGATAA+CGG | - | chr2_3:59090247-59090266 | Msa0302300:intron | 30.0% | |
| TCGTTCTTTGTAGACTTTAT+AGG | - | chr2_3:59090332-59090351 | Msa0302300:CDS | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+AGG | - | chr2_3:59090376-59090395 | Msa0302300:CDS | 30.0% | |
| ! | ATCGATTCAAAAGAATGCAA+TGG | + | chr2_3:59090729-59090748 | None:intergenic | 30.0% |
| TACAGCTTAGATTCAACATA+TGG | + | chr2_3:59090758-59090777 | None:intergenic | 30.0% | |
| GAAAATACTTGTAGAGTAGA+TGG | - | chr2_3:59090992-59091011 | Msa0302300:intron | 30.0% | |
| TTAAGGATTTGAATGCTTGT+TGG | - | chr2_3:59091016-59091035 | Msa0302300:intron | 30.0% | |
| ! | TTTATTGTGTTTGCTACATC+TGG | - | chr2_3:59091052-59091071 | Msa0302300:intron | 30.0% |
| TACTCTACAAGTATTTGAGA+AGG | + | chr2_3:59091083-59091102 | None:intergenic | 30.0% | |
| TCAAATACTTGTAGAGTAGA+TGG | - | chr2_3:59091085-59091104 | Msa0302300:intron | 30.0% | |
| ATATGAAACTAAGGTAAGCT+AGG | + | chr2_3:59091170-59091189 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | - | chr2_3:59091207-59091226 | Msa0302300:intron | 30.0% | |
| TATATGGAAGTTCAAAGCTT+GGG | - | chr2_3:59091223-59091242 | Msa0302300:intron | 30.0% | |
| !! | TTTGCTAACAGTTTTAACGT+AGG | + | chr2_3:59091482-59091501 | None:intergenic | 30.0% |
| ! | ACTTATGTTGATCCATTTTC+TGG | - | chr2_3:59091541-59091560 | Msa0302300:five_prime_UTR | 30.0% |
| GAAGTTATTGTTGTGGATGA+TGG | - | chr2_3:59089107-59089126 | Msa0302300:intron | 35.0% | |
| AACAGGTTTATGGAGAAGAT+CGG | - | chr2_3:59089168-59089187 | Msa0302300:intron | 35.0% | |
| !!! | CCGTGACCTATTCTATTTTT+TGG | - | chr2_3:59089528-59089547 | Msa0302300:intron | 35.0% |
| GATAAAACTGGCATTTGATG+TGG | - | chr2_3:59089681-59089700 | Msa0302300:CDS | 35.0% | |
| ATGTGGTCAATTTGTAGGTA+CGG | - | chr2_3:59089698-59089717 | Msa0302300:CDS | 35.0% | |
| ATGCTTCATGCCATGAATAT+AGG | + | chr2_3:59089724-59089743 | None:intergenic | 35.0% | |
| ACAAACAGGACTTGAATAGT+TGG | - | chr2_3:59089870-59089889 | Msa0302300:CDS | 35.0% | |
| ! | ATGAAGCCTGGCAAATATTT+TGG | + | chr2_3:59089985-59090004 | None:intergenic | 35.0% |
| AATATTTGCCAGGCTTCATT+AGG | - | chr2_3:59089986-59090005 | Msa0302300:CDS | 35.0% | |
| ! | AAAAGGCAAGAGTTAAGTTG+TGG | + | chr2_3:59090057-59090076 | None:intergenic | 35.0% |
| TAATGCGCAAACTAACAAGT+AGG | - | chr2_3:59090163-59090182 | Msa0302300:intron | 35.0% | |
| AATGCGCAAACTAACAAGTA+GGG | - | chr2_3:59090164-59090183 | Msa0302300:intron | 35.0% | |
| ! | TTTGATATGGTACCCTTTTC+TGG | + | chr2_3:59090437-59090456 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATCAAAG+AGG | - | chr2_3:59090438-59090457 | Msa0302300:intron | 35.0% |
| ATGATGTCAACATAACAACC+AGG | + | chr2_3:59090503-59090522 | None:intergenic | 35.0% | |
| CATGAGTTAGATGTGTAGTT+AGG | - | chr2_3:59090527-59090546 | Msa0302300:intron | 35.0% | |
| TTCAAATTACCCACTTGGAT+AGG | - | chr2_3:59090807-59090826 | Msa0302300:intron | 35.0% | |
| AGTACGACTGTCATTCAAAT+TGG | + | chr2_3:59090922-59090941 | None:intergenic | 35.0% | |
| CCTGTAGACATATGAAACTA+AGG | + | chr2_3:59091179-59091198 | None:intergenic | 35.0% | |
| CCTTAGTTTCATATGTCTAC+AGG | - | chr2_3:59091176-59091195 | Msa0302300:intron | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | + | chr2_3:59091204-59091223 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | - | chr2_3:59091222-59091241 | Msa0302300:intron | 35.0% | |
| ATATGGAAGTTCAAAGCTTG+GGG | - | chr2_3:59091224-59091243 | Msa0302300:intron | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | - | chr2_3:59091252-59091271 | Msa0302300:intron | 35.0% | |
| TAGTCATCAGAAGATATACC+AGG | + | chr2_3:59091278-59091297 | None:intergenic | 35.0% | |
| GTTCAGTAACCTGATTATTG+AGG | - | chr2_3:59091358-59091377 | Msa0302300:exon | 35.0% | |
| AACTTGTGTCCTCAATAATC+AGG | + | chr2_3:59091370-59091389 | None:intergenic | 35.0% | |
| CAAACTATGCAGATTCTATC+AGG | + | chr2_3:59091395-59091414 | None:intergenic | 35.0% | |
| AAGAGTCGCATATTAATGGT+TGG | + | chr2_3:59091587-59091606 | None:intergenic | 35.0% | |
| TAGGAAGAGTCGCATATTAA+TGG | + | chr2_3:59091591-59091610 | None:intergenic | 35.0% | |
| AATATGCGACTCTTCCTAAA+TGG | - | chr2_3:59091593-59091612 | Msa0302300:five_prime_UTR | 35.0% | |
| TAGTGTCATGTCATGTGTGT+TGG | - | chr2_3:59088918-59088937 | Msa0302300:intron | 40.0% | |
| ACAACATCTTGAGTACCATC+AGG | + | chr2_3:59089137-59089156 | None:intergenic | 40.0% | |
| TCAATACTGTGGTGCACAAT+TGG | + | chr2_3:59089294-59089313 | None:intergenic | 40.0% | |
| ! | ATTGTGCACCACAGTATTGA+AGG | - | chr2_3:59089294-59089313 | Msa0302300:intron | 40.0% |
| ! | AGGTCACGGATTGAGTAAAT+AGG | + | chr2_3:59089517-59089536 | None:intergenic | 40.0% |
| AGTTGTTAAGAGCAAGACCT+AGG | - | chr2_3:59089608-59089627 | Msa0302300:intron | 40.0% | |
| TTTCCTTACCTAATGAAGCC+TGG | + | chr2_3:59089997-59090016 | None:intergenic | 40.0% | |
| TTCAGAAAGCAGTTGGAAAC+TGG | - | chr2_3:59090081-59090100 | Msa0302300:intron | 40.0% | |
| !! | ACTGGTGCTGATATAGTTAC+AGG | - | chr2_3:59090099-59090118 | Msa0302300:intron | 40.0% |
| !! | CTGGTGCTGATATAGTTACA+GGG | - | chr2_3:59090100-59090119 | Msa0302300:intron | 40.0% |
| CTGATATAGTTACAGGGACT+CGG | - | chr2_3:59090106-59090125 | Msa0302300:intron | 40.0% | |
| ATGCGCAAACTAACAAGTAG+GGG | - | chr2_3:59090165-59090184 | Msa0302300:intron | 40.0% | |
| ! | CAGATTTGACAGGGTCTTTT+AGG | - | chr2_3:59090229-59090248 | Msa0302300:intron | 40.0% |
| AATCTCAAACCAGTCAACAG+GGG | + | chr2_3:59090303-59090322 | None:intergenic | 40.0% | |
| CAATCTCAAACCAGTCAACA+GGG | + | chr2_3:59090304-59090323 | None:intergenic | 40.0% | |
| TCAATCTCAAACCAGTCAAC+AGG | + | chr2_3:59090305-59090324 | None:intergenic | 40.0% | |
| ATAGTACGAGCATCCAGAAA+AGG | - | chr2_3:59090421-59090440 | Msa0302300:intron | 40.0% | |
| TAGTACGAGCATCCAGAAAA+GGG | - | chr2_3:59090422-59090441 | Msa0302300:intron | 40.0% | |
| CTTGTAGAGTAGATGGCTTA+AGG | - | chr2_3:59090999-59091018 | Msa0302300:intron | 40.0% | |
| CAGAGTGATAAGCTTGAACA+GGG | + | chr2_3:59091133-59091152 | None:intergenic | 40.0% | |
| ACAGAGTGATAAGCTTGAAC+AGG | + | chr2_3:59091134-59091153 | None:intergenic | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+GGG | - | chr2_3:59091225-59091244 | Msa0302300:intron | 40.0% | |
| GTCGCATATTAATGGTTGGT+TGG | + | chr2_3:59091583-59091602 | None:intergenic | 40.0% | |
| AACTCGCCGGAGTTAGTTAT+CGG | - | chr2_3:59088580-59088599 | Msa0302300:three_prime_UTR | 45.0% | |
| AACGAGTTGCTCACTGTTTC+CGG | + | chr2_3:59088609-59088628 | None:intergenic | 45.0% | |
| AAGAGCAAGACCTAGGAAGA+TGG | - | chr2_3:59089615-59089634 | Msa0302300:intron | 45.0% | |
| AGAGCAAGACCTAGGAAGAT+GGG | - | chr2_3:59089616-59089635 | Msa0302300:intron | 45.0% | |
| ! | AGACCTAGGAAGATGGGTTT+AGG | - | chr2_3:59089622-59089641 | Msa0302300:intron | 45.0% |
| ACACCTAAACCCATCTTCCT+AGG | + | chr2_3:59089628-59089647 | None:intergenic | 45.0% | |
| GTAGGTACGGCCTATATTCA+TGG | - | chr2_3:59089711-59089730 | Msa0302300:CDS | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | - | chr2_3:59089976-59089995 | Msa0302300:CDS | 45.0% | |
| TTGCCAGGCTTCATTAGGTA+AGG | - | chr2_3:59089991-59090010 | Msa0302300:CDS | 45.0% | |
| ! | ACAGGGACTCGGTATGTTAA+AGG | - | chr2_3:59090117-59090136 | Msa0302300:intron | 45.0% |
| ! | GCACAAACACTTTTATGGCC+CGG | - | chr2_3:59090201-59090220 | Msa0302300:intron | 45.0% |
| GGTACCATATCAAAGAGGTG+CGG | - | chr2_3:59090443-59090462 | Msa0302300:intron | 45.0% | |
| GAAACCGCACCTCTTTGATA+TGG | + | chr2_3:59090450-59090469 | None:intergenic | 45.0% | |
| TGTATGTGCTCTGTCTGTTC+AGG | - | chr2_3:59090678-59090697 | Msa0302300:intron | 45.0% | |
| ATGCAACAGCCTATCCAAGT+GGG | + | chr2_3:59090819-59090838 | None:intergenic | 45.0% | |
| TTGGATAGGCTGTTGCATGT+TGG | - | chr2_3:59090821-59090840 | Msa0302300:intron | 45.0% | |
| TCAGACAGTTTGCAAAGCAC+AGG | + | chr2_3:59090953-59090972 | None:intergenic | 45.0% | |
| ATGGAAGTTCAAAGCTTGGG+GGG | - | chr2_3:59091226-59091245 | Msa0302300:intron | 45.0% | |
| TGTTGAATACCTGAAAGGCC+TGG | - | chr2_3:59091257-59091276 | Msa0302300:intron | 45.0% | |
| GAAGATATACCAGGCCTTTC+AGG | + | chr2_3:59091269-59091288 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr2_3:59091448-59091467 | Msa0302300:intron | 5.0% |
| ! | TCTAAAGGGCTCTAGTGCAG+CGG | + | chr2_3:59089017-59089036 | None:intergenic | 50.0% |
| ! | GGGACTCGGTATGTTAAAGG+CGG | - | chr2_3:59090120-59090139 | Msa0302300:intron | 50.0% |
| ACTCGGTATGTTAAAGGCGG+TGG | - | chr2_3:59090123-59090142 | Msa0302300:intron | 50.0% | |
| GTTAAAGGCGGTGGTGTACA+TGG | - | chr2_3:59090132-59090151 | Msa0302300:intron | 50.0% | |
| ! | CCTGTCAAATCTGAGACACC+GGG | + | chr2_3:59090222-59090241 | None:intergenic | 50.0% |
| ! | CCCTGTCAAATCTGAGACAC+CGG | + | chr2_3:59090223-59090242 | None:intergenic | 50.0% |
| CCGGTGTCTCAGATTTGACA+GGG | - | chr2_3:59090220-59090239 | Msa0302300:intron | 50.0% | |
| TTTGTTGCTCCCCTGTTGAC+TGG | - | chr2_3:59090291-59090310 | Msa0302300:intron | 50.0% | |
| AGGTGCGGTTTCTTACGTGA+GGG | - | chr2_3:59090458-59090477 | Msa0302300:intron | 50.0% | |
| CATGCAACAGCCTATCCAAG+TGG | + | chr2_3:59090820-59090839 | None:intergenic | 50.0% | |
| CGGTGGCCGATAACTAACTC+CGG | + | chr2_3:59088589-59088608 | None:intergenic | 55.0% | |
| CGGAGTTAGTTATCGGCCAC+CGG | - | chr2_3:59088587-59088606 | Msa0302300:three_prime_UTR | 55.0% | |
| GAGTTGCTCACTGTTTCCGG+TGG | + | chr2_3:59088606-59088625 | None:intergenic | 55.0% | |
| !! | GTGGATGATGGGAGTCCTGA+TGG | - | chr2_3:59089119-59089138 | Msa0302300:intron | 55.0% |
| CATGGCATGAAGCATGCGTC+CGG | - | chr2_3:59089729-59089748 | Msa0302300:CDS | 55.0% | |
| AAGGCGGTGGTGTACATGGA+TGG | - | chr2_3:59090136-59090155 | Msa0302300:intron | 55.0% | |
| CCCGGTGTCTCAGATTTGAC+AGG | - | chr2_3:59090219-59090238 | Msa0302300:intron | 55.0% | |
| GAGGTGCGGTTTCTTACGTG+AGG | - | chr2_3:59090457-59090476 | Msa0302300:intron | 55.0% | |
| TCGCGCTGAACTCAACTCGC+CGG | - | chr2_3:59088567-59088586 | Msa0302300:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 59088496 | 59091619 | 59088496 | ID=Msa0302300;Name=Msa0302300 |
| chr2_3 | mRNA | 59088496 | 59091619 | 59088496 | ID=Msa0302300-mRNA-1;Parent=Msa0302300;Name=Msa0302300-mRNA-1;_AED=0.25;_eAED=0.25;_QI=128|0.77|0.9|1|0.55|0.5|10|277|223 |
| chr2_3 | exon | 59088496 | 59088647 | 59088496 | ID=Msa0302300-mRNA-1:exon:19125;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59088688 | 59088917 | 59088688 | ID=Msa0302300-mRNA-1:exon:19124;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59089656 | 59089770 | 59089656 | ID=Msa0302300-mRNA-1:exon:19123;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59089865 | 59090029 | 59089865 | ID=Msa0302300-mRNA-1:exon:19122;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59090108 | 59090133 | 59090108 | ID=Msa0302300-mRNA-1:exon:19121;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59090324 | 59090400 | 59090324 | ID=Msa0302300-mRNA-1:exon:19120;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59090472 | 59090505 | 59090472 | ID=Msa0302300-mRNA-1:exon:19119;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59090943 | 59090982 | 59090943 | ID=Msa0302300-mRNA-1:exon:19118;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59091262 | 59091380 | 59091262 | ID=Msa0302300-mRNA-1:exon:19117;Parent=Msa0302300-mRNA-1 |
| chr2_3 | exon | 59091501 | 59091619 | 59091501 | ID=Msa0302300-mRNA-1:exon:19116;Parent=Msa0302300-mRNA-1 |
| chr2_3 | five_prime_UTR | 59091501 | 59091619 | 59091501 | ID=Msa0302300-mRNA-1:five_prime_utr;Parent=Msa0302300-mRNA-1 |
| chr2_3 | five_prime_UTR | 59091372 | 59091380 | 59091372 | ID=Msa0302300-mRNA-1:five_prime_utr;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59091262 | 59091371 | 59091262 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59090943 | 59090982 | 59090943 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59090472 | 59090505 | 59090472 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59090324 | 59090400 | 59090324 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59090108 | 59090133 | 59090108 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59089865 | 59090029 | 59089865 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59089656 | 59089770 | 59089656 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | CDS | 59088813 | 59088917 | 59088813 | ID=Msa0302300-mRNA-1:cds;Parent=Msa0302300-mRNA-1 |
| chr2_3 | three_prime_UTR | 59088688 | 59088812 | 59088688 | ID=Msa0302300-mRNA-1:three_prime_utr;Parent=Msa0302300-mRNA-1 |
| chr2_3 | three_prime_UTR | 59088496 | 59088647 | 59088496 | ID=Msa0302300-mRNA-1:three_prime_utr;Parent=Msa0302300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
