Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427190 | XP_024631934.2 | 89.712 | 243 | 5 | 2 | 1 | 223 | 1 | 243 | 1.45e-151 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427190 | sp|Q9LM93|DPM1_ARATH | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.74e-137 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427190 | A0A396IBZ2 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 9.05e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033840 | Msa1427190 | 0.805944 | 1.045330e-49 | -8.615850e-47 |
| Msa0081610 | Msa1427190 | 0.816874 | 4.415789e-52 | -8.615850e-47 |
| Msa0613300 | Msa1427190 | -0.800975 | 1.119760e-48 | -8.615850e-47 |
| Msa0173950 | Msa1427190 | 0.808238 | 3.415814e-50 | -8.615850e-47 |
| Msa0223200 | Msa1427190 | 0.981294 | 3.069364e-152 | -8.615850e-47 |
| Msa0264410 | Msa1427190 | 0.884127 | 2.499174e-71 | -8.615850e-47 |
| Msa0302300 | Msa1427190 | 0.940491 | 2.130123e-100 | -8.615850e-47 |
| Msa0339660 | Msa1427190 | 0.949211 | 2.010651e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427190 | MtrunA17_Chr4g0046071 | 86.831 | 243 | 12 | 2 | 1 | 223 | 1 | 243 | 1.74e-152 | 423 |
| Msa1427190 | MtrunA17_Chr2g0328281 | 82.456 | 228 | 30 | 2 | 3 | 223 | 13 | 237 | 6.60e-134 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427190 | AT1G20575.1 | 78.661 | 239 | 31 | 2 | 5 | 223 | 8 | 246 | 3.80e-138 | 387 |
Find 66 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAGTTGCTCACTGTTTC+CGG | 0.175480 | tig0026171:-27462 | None:intergenic |
| TCGTTCTTTGTAGACTTTAT+AGG | 0.189170 | tig0026171:+29156 | Msa1427190:intron |
| ATGAAGCCTGGCAAATATTT+TGG | 0.190219 | tig0026171:-28806 | None:intergenic |
| GAAGATATACCAGGCCTTTC+AGG | 0.213828 | tig0026171:-30089 | None:intergenic |
| CCAATTTCAGATTAAAATAA+TGG | 0.221772 | tig0026171:+27580 | Msa1427190:intron |
| GAGCAGTTGCATTTCCATTT+AGG | 0.258096 | tig0026171:-30432 | None:intergenic |
| CATAATGACAACAAAATTTC+CGG | 0.304728 | tig0026171:-28572 | None:intergenic |
| TAGGAAGAGTCGCATATTAA+TGG | 0.310873 | tig0026171:-30413 | None:intergenic |
| AATATGCGACTCTTCCTAAA+TGG | 0.322673 | tig0026171:+30418 | Msa1427190:three_prime_UTR |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | tig0026171:+30030 | Msa1427190:CDS |
| AATATTTGCCAGGCTTCATT+AGG | 0.338833 | tig0026171:+28810 | Msa1427190:CDS |
| CAAACTATGCAGATTCTATC+AGG | 0.349018 | tig0026171:-30215 | None:intergenic |
| ACTGGTGCTGATATAGTTAC+AGG | 0.361148 | tig0026171:+28923 | Msa1427190:CDS |
| ACAGGGACTCGGTATGTTAA+AGG | 0.371437 | tig0026171:+28941 | Msa1427190:CDS |
| TTCAGAAAGCAGTTGGAAAC+TGG | 0.371824 | tig0026171:+28905 | Msa1427190:intron |
| ATGCTTCATGCCATGAATAT+AGG | 0.378458 | tig0026171:-28545 | None:intergenic |
| GTAGGTACGGCCTATATTCA+TGG | 0.398632 | tig0026171:+28535 | Msa1427190:intron |
| AGACCTAGGAAGATGGGTTT+AGG | 0.404208 | tig0026171:+28446 | Msa1427190:CDS |
| AACTTGTGTCCTCAATAATC+AGG | 0.426075 | tig0026171:-30190 | None:intergenic |
| TATATGGAAGTTCAAAGCTT+GGG | 0.426124 | tig0026171:+30046 | Msa1427190:CDS |
| TAAAGGATATGTCTTTCAAA+TGG | 0.429662 | tig0026171:+29217 | Msa1427190:CDS |
| TGTTGTAAAACAATTGCAAC+AGG | 0.432571 | tig0026171:+27978 | Msa1427190:CDS |
| AACTCGCCGGAGTTAGTTAT+CGG | 0.450823 | tig0026171:+27436 | Msa1427190:five_prime_UTR |
| GAAACCGCACCTCTTTGATA+TGG | 0.453561 | tig0026171:-29271 | None:intergenic |
| CTGCAGCCAAAATATTTGCC+AGG | 0.467710 | tig0026171:+28800 | Msa1427190:intron |
| CCCGGTGTCTCAGATTTGAC+AGG | 0.469407 | tig0026171:+29043 | Msa1427190:CDS |
| TTGAGTCGTTCATTATATGT+AGG | 0.474173 | tig0026171:-27647 | None:intergenic |
| CCCTGTCAAATCTGAGACAC+CGG | 0.478872 | tig0026171:-29044 | None:intergenic |
| ATAGTACGAGCATCCAGAAA+AGG | 0.481126 | tig0026171:+29245 | Msa1427190:CDS |
| ATTAGTTGCTGTGTTAGTAA+AGG | 0.488144 | tig0026171:+29200 | Msa1427190:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | tig0026171:-30024 | None:intergenic |
| ACACCTAAACCCATCTTCCT+AGG | 0.493673 | tig0026171:-28449 | None:intergenic |
| TAATGCGCAAACTAACAAGT+AGG | 0.495530 | tig0026171:+28987 | Msa1427190:CDS |
| GTTCAGTAACCTGATTATTG+AGG | 0.497826 | tig0026171:+30181 | Msa1427190:three_prime_UTR |
| CATGGCATGAAGCATGCGTC+CGG | 0.503198 | tig0026171:+28553 | Msa1427190:CDS |
| AAGAGCAAGACCTAGGAAGA+TGG | 0.504382 | tig0026171:+28439 | Msa1427190:CDS |
| GTTAAAGGCGGTGGTGTACA+TGG | 0.509663 | tig0026171:+28956 | Msa1427190:CDS |
| ACAACATCTTGAGTACCATC+AGG | 0.509872 | tig0026171:-27961 | None:intergenic |
| GTATATGGAAGTTCAAAGCT+TGG | 0.516811 | tig0026171:+30045 | Msa1427190:CDS |
| AATGCGCAAACTAACAAGTA+GGG | 0.525198 | tig0026171:+28988 | Msa1427190:CDS |
| CTGATATAGTTACAGGGACT+CGG | 0.525975 | tig0026171:+28930 | Msa1427190:CDS |
| TTTCCTTACCTAATGAAGCC+TGG | 0.533463 | tig0026171:-28818 | None:intergenic |
| AGAGCAAGACCTAGGAAGAT+GGG | 0.539880 | tig0026171:+28440 | Msa1427190:CDS |
| ACTCGGTATGTTAAAGGCGG+TGG | 0.541395 | tig0026171:+28947 | Msa1427190:CDS |
| GTCGCATATTAATGGTTGGT+TGG | 0.544771 | tig0026171:-30405 | None:intergenic |
| TAGTACGAGCATCCAGAAAA+GGG | 0.550858 | tig0026171:+29246 | Msa1427190:CDS |
| AAGGCGGTGGTGTACATGGA+TGG | 0.557858 | tig0026171:+28960 | Msa1427190:CDS |
| AGTTGTTAAGAGCAAGACCT+AGG | 0.559010 | tig0026171:+28432 | Msa1427190:intron |
| GTGGATGATGGGAGTCCTGA+TGG | 0.562624 | tig0026171:+27946 | Msa1427190:intron |
| AAGAGTCGCATATTAATGGT+TGG | 0.565148 | tig0026171:-30409 | None:intergenic |
| TGTTGAATACCTGAAAGGCC+TGG | 0.581214 | tig0026171:+30080 | Msa1427190:CDS |
| CGGAGTTAGTTATCGGCCAC+CGG | 0.585776 | tig0026171:+27443 | Msa1427190:five_prime_UTR |
| ATATGGAAGTTCAAAGCTTG+GGG | 0.588590 | tig0026171:+30047 | Msa1427190:CDS |
| CTGGTGCTGATATAGTTACA+GGG | 0.596454 | tig0026171:+28924 | Msa1427190:CDS |
| TAGTCATCAGAAGATATACC+AGG | 0.607775 | tig0026171:-30098 | None:intergenic |
| TCGCGCTGAACTCAACTCGC+CGG | 0.608082 | tig0026171:+27423 | Msa1427190:five_prime_UTR |
| GAGATTGTTGAATACCTGAA+AGG | 0.609990 | tig0026171:+30075 | Msa1427190:CDS |
| CCGGTGTCTCAGATTTGACA+GGG | 0.611198 | tig0026171:+29044 | Msa1427190:CDS |
| CCTGTCAAATCTGAGACACC+GGG | 0.626189 | tig0026171:-29043 | None:intergenic |
| CGGTGGCCGATAACTAACTC+CGG | 0.633953 | tig0026171:-27442 | None:intergenic |
| ATGCGCAAACTAACAAGTAG+GGG | 0.654373 | tig0026171:+28989 | Msa1427190:CDS |
| GAGTTGCTCACTGTTTCCGG+TGG | 0.654634 | tig0026171:-27459 | None:intergenic |
| ATGGAAGTTCAAAGCTTGGG+GGG | 0.696439 | tig0026171:+30049 | Msa1427190:CDS |
| AAAAGGGTACCATATCAAAG+AGG | 0.698624 | tig0026171:+29262 | Msa1427190:CDS |
| GGGACTCGGTATGTTAAAGG+CGG | 0.724417 | tig0026171:+28944 | Msa1427190:CDS |
| TATGGAAGTTCAAAGCTTGG+GGG | 0.735164 | tig0026171:+30048 | Msa1427190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATATTTTTCAATTTAA+GGG | + | tig0026171:28246-28265 | Msa1427190:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAACGT+AGG | - | tig0026171:30264-30283 | None:intergenic | 10.0% |
| !! | CGCATTAATTAAATTAAAAA+AGG | - | tig0026171:27497-27516 | None:intergenic | 15.0% |
| !! | ATATATATAATTCTGATTGA+AGG | - | tig0026171:27804-27823 | None:intergenic | 15.0% |
| !!! | GATTGATATTTTTCAATTTA+AGG | + | tig0026171:28245-28264 | Msa1427190:intron | 15.0% |
| !! | TAATTAATCTTTGATAAAAC+TGG | + | tig0026171:28493-28512 | Msa1427190:intron | 15.0% |
| !! | TATAACAAGATATGTATAAA+TGG | - | tig0026171:29401-29420 | None:intergenic | 15.0% |
| !!! | TTACAAGTTTTATGAATAAA+AGG | - | tig0026171:29461-29480 | None:intergenic | 15.0% |
| !! | TATTCATAAAACTTGTAAAT+TGG | + | tig0026171:29463-29482 | Msa1427190:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | + | tig0026171:30276-30295 | Msa1427190:intron | 15.0% |
| !!! | TTTTGATGATTAATTGATTT+TGG | + | tig0026171:30327-30346 | Msa1427190:three_prime_UTR | 15.0% |
| !!! | CCATTATTTTAATCTGAAAT+TGG | - | tig0026171:27583-27602 | None:intergenic | 20.0% |
| !! | CCAATTTCAGATTAAAATAA+TGG | + | tig0026171:27580-27599 | Msa1427190:intron | 20.0% |
| !! | TAAAAATAAGGTAAAGAATG+AGG | - | tig0026171:27679-27698 | None:intergenic | 20.0% |
| !! | GAAGAGATTAAAGAAAATTA+CGG | - | tig0026171:27710-27729 | None:intergenic | 20.0% |
| !!! | TTGCTAAAGAAATATTTTGA+TGG | + | tig0026171:28210-28229 | Msa1427190:intron | 20.0% |
| !! | TTATTCTAAATAATACGAAG+GGG | - | tig0026171:28390-28409 | None:intergenic | 20.0% |
| !! | GTTATTCTAAATAATACGAA+GGG | - | tig0026171:28391-28410 | None:intergenic | 20.0% |
| !!! | GATTAATTAGTAAAAGTATC+AGG | - | tig0026171:28482-28501 | None:intergenic | 20.0% |
| !! | AAGAGTGATTAAATTTGAAA+AGG | + | tig0026171:28659-28678 | Msa1427190:intron | 20.0% |
| !!! | TATTATCTTTTACATTAACC+TGG | + | tig0026171:29306-29325 | Msa1427190:intron | 20.0% |
| !!! | GTTTGTCTTTTAATTTTTGT+AGG | + | tig0026171:30233-30252 | Msa1427190:intron | 20.0% |
| ! | AGATTAAAGAAAATTACGGA+AGG | - | tig0026171:27706-27725 | None:intergenic | 25.0% |
| !!! | TATTAAATAGCAGCTCTAAA+GGG | - | tig0026171:27858-27877 | None:intergenic | 25.0% |
| !! | TTATTAAATAGCAGCTCTAA+AGG | - | tig0026171:27859-27878 | None:intergenic | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | + | tig0026171:27927-27946 | Msa1427190:intron | 25.0% |
| ! | ATAAGTAGTGCTTCATAAAT+AGG | + | tig0026171:28043-28062 | Msa1427190:intron | 25.0% |
| ! | TAGATCCCAAAAAATAGAAT+AGG | - | tig0026171:28361-28380 | None:intergenic | 25.0% |
| ! | TATTCTAAATAATACGAAGG+GGG | - | tig0026171:28389-28408 | None:intergenic | 25.0% |
| ! | GGTTATTCTAAATAATACGA+AGG | - | tig0026171:28392-28411 | None:intergenic | 25.0% |
| ! | AATAACCATGTTTATTCTTG+TGG | + | tig0026171:28405-28424 | Msa1427190:intron | 25.0% |
| ! | CATAATGACAACAAAATTTC+CGG | - | tig0026171:28575-28594 | None:intergenic | 25.0% |
| ! | AATGAACAGAATAACTTACA+TGG | - | tig0026171:28615-28634 | None:intergenic | 25.0% |
| !!! | ATAACGGATATTAAACAGTT+TGG | + | tig0026171:29087-29106 | Msa1427190:intron | 25.0% |
| ! | TAAAGGATATGTCTTTCAAA+TGG | + | tig0026171:29217-29236 | Msa1427190:CDS | 25.0% |
| ! | AGTGGGTAATTTGAAAAAAA+TGG | - | tig0026171:29625-29644 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAATTACCCACT+TGG | + | tig0026171:29625-29644 | Msa1427190:intron | 25.0% |
| !! | TATGTTTTGCAAAAACTCAA+AGG | + | tig0026171:30150-30169 | Msa1427190:three_prime_UTR | 25.0% |
| ! | AAAAACAGAAAACCAGAAAA+TGG | - | tig0026171:30381-30400 | None:intergenic | 25.0% |
| TTGAGTCGTTCATTATATGT+AGG | - | tig0026171:27650-27669 | None:intergenic | 30.0% | |
| !! | ACGGAAGGTGTTTAAAAATA+AGG | - | tig0026171:27691-27710 | None:intergenic | 30.0% |
| AAGTTATTGTTGTGGATGAT+GGG | + | tig0026171:27935-27954 | Msa1427190:intron | 30.0% | |
| TGTTGTAAAACAATTGCAAC+AGG | + | tig0026171:27978-27997 | Msa1427190:CDS | 30.0% | |
| AAACAATTGCAACAGGTTTA+TGG | + | tig0026171:27985-28004 | Msa1427190:intron | 30.0% | |
| AAATATGACCTTCAATACTG+TGG | - | tig0026171:28129-28148 | None:intergenic | 30.0% | |
| TTTAGTCACTGAATTTGCAA+GGG | - | tig0026171:28315-28334 | None:intergenic | 30.0% | |
| ! | TTTTAGTCACTGAATTTGCA+AGG | - | tig0026171:28316-28335 | None:intergenic | 30.0% |
| CCAAAAAATAGAATAGGTCA+CGG | - | tig0026171:28355-28374 | None:intergenic | 30.0% | |
| !!! | CGTGACCTATTCTATTTTTT+GGG | + | tig0026171:28353-28372 | Msa1427190:intron | 30.0% |
| TGTAACCACAAGAATAAACA+TGG | - | tig0026171:28413-28432 | None:intergenic | 30.0% | |
| ATTTGATGTGGTCAATTTGT+AGG | + | tig0026171:28517-28536 | Msa1427190:intron | 30.0% | |
| !! | CGGAAATTTTGTTGTCATTA+TGG | + | tig0026171:28573-28592 | Msa1427190:CDS | 30.0% |
| CAGAACAACAAAAACATATC+AGG | - | tig0026171:28783-28802 | None:intergenic | 30.0% | |
| ! | ACTGCTTTCTGAAAAAGAAA+AGG | - | tig0026171:28898-28917 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAGAAAGCAGT+TGG | + | tig0026171:28898-28917 | Msa1427190:intron | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | + | tig0026171:29020-29039 | Msa1427190:CDS | 30.0% |
| TTAGGTATAGAGCTTGATAA+CGG | + | tig0026171:29071-29090 | Msa1427190:intron | 30.0% | |
| TCGTTCTTTGTAGACTTTAT+AGG | + | tig0026171:29156-29175 | Msa1427190:intron | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+AGG | + | tig0026171:29200-29219 | Msa1427190:CDS | 30.0% | |
| ! | ATCGATTCAAAAGAATGCAA+TGG | - | tig0026171:29553-29572 | None:intergenic | 30.0% |
| TACAGCTTAGATTCAACATA+TGG | - | tig0026171:29582-29601 | None:intergenic | 30.0% | |
| GAAAATACTTGTAGAGTAGA+TGG | + | tig0026171:29815-29834 | Msa1427190:intron | 30.0% | |
| TTAAGGATTTGAATGCTTGT+TGG | + | tig0026171:29839-29858 | Msa1427190:intron | 30.0% | |
| ! | TTTATTGTGTTTGCTACATC+TGG | + | tig0026171:29875-29894 | Msa1427190:intron | 30.0% |
| TACTCTACAAGTATTTGAGA+AGG | - | tig0026171:29906-29925 | None:intergenic | 30.0% | |
| TCAAATACTTGTAGAGTAGA+TGG | + | tig0026171:29908-29927 | Msa1427190:intron | 30.0% | |
| ATATGAAACTAAGGTAAGCT+AGG | - | tig0026171:29993-30012 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | + | tig0026171:30030-30049 | Msa1427190:CDS | 30.0% | |
| TATATGGAAGTTCAAAGCTT+GGG | + | tig0026171:30046-30065 | Msa1427190:CDS | 30.0% | |
| !! | TTTGCTAACAGTTTTAACGT+AGG | - | tig0026171:30307-30326 | None:intergenic | 30.0% |
| ! | ACTTATGTTGATCCATTTTC+TGG | + | tig0026171:30366-30385 | Msa1427190:three_prime_UTR | 30.0% |
| GAAGTTATTGTTGTGGATGA+TGG | + | tig0026171:27934-27953 | Msa1427190:intron | 35.0% | |
| AACAGGTTTATGGAGAAGAT+CGG | + | tig0026171:27995-28014 | Msa1427190:intron | 35.0% | |
| !!! | CCGTGACCTATTCTATTTTT+TGG | + | tig0026171:28352-28371 | Msa1427190:intron | 35.0% |
| GATAAAACTGGCATTTGATG+TGG | + | tig0026171:28505-28524 | Msa1427190:intron | 35.0% | |
| ATGTGGTCAATTTGTAGGTA+CGG | + | tig0026171:28522-28541 | Msa1427190:intron | 35.0% | |
| ATGCTTCATGCCATGAATAT+AGG | - | tig0026171:28548-28567 | None:intergenic | 35.0% | |
| GGAATAGAAAGTTGACAAAC+AGG | + | tig0026171:28680-28699 | Msa1427190:intron | 35.0% | |
| ACAAACAGGACTTGAATAGT+TGG | + | tig0026171:28694-28713 | Msa1427190:intron | 35.0% | |
| ! | ATGAAGCCTGGCAAATATTT+TGG | - | tig0026171:28809-28828 | None:intergenic | 35.0% |
| AATATTTGCCAGGCTTCATT+AGG | + | tig0026171:28810-28829 | Msa1427190:CDS | 35.0% | |
| ! | AAAAGGCAAGAGTTAAGTTG+TGG | - | tig0026171:28881-28900 | None:intergenic | 35.0% |
| TAATGCGCAAACTAACAAGT+AGG | + | tig0026171:28987-29006 | Msa1427190:CDS | 35.0% | |
| AATGCGCAAACTAACAAGTA+GGG | + | tig0026171:28988-29007 | Msa1427190:CDS | 35.0% | |
| ! | TTTGATATGGTACCCTTTTC+TGG | - | tig0026171:29261-29280 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATCAAAG+AGG | + | tig0026171:29262-29281 | Msa1427190:CDS | 35.0% |
| ATGATGTCAACATAACAACC+AGG | - | tig0026171:29327-29346 | None:intergenic | 35.0% | |
| CATGAGTTAGATGTGTAGTT+AGG | + | tig0026171:29351-29370 | Msa1427190:intron | 35.0% | |
| TTCAAATTACCCACTTGGAT+AGG | + | tig0026171:29630-29649 | Msa1427190:intron | 35.0% | |
| AGTACGACTGTCATTCAAAT+TGG | - | tig0026171:29745-29764 | None:intergenic | 35.0% | |
| CCTGTAGACATATGAAACTA+AGG | - | tig0026171:30002-30021 | None:intergenic | 35.0% | |
| CCTTAGTTTCATATGTCTAC+AGG | + | tig0026171:29999-30018 | Msa1427190:intron | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | - | tig0026171:30027-30046 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | + | tig0026171:30045-30064 | Msa1427190:CDS | 35.0% | |
| ATATGGAAGTTCAAAGCTTG+GGG | + | tig0026171:30047-30066 | Msa1427190:CDS | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | + | tig0026171:30075-30094 | Msa1427190:CDS | 35.0% | |
| TAGTCATCAGAAGATATACC+AGG | - | tig0026171:30101-30120 | None:intergenic | 35.0% | |
| GTTCAGTAACCTGATTATTG+AGG | + | tig0026171:30181-30200 | Msa1427190:three_prime_UTR | 35.0% | |
| AACTTGTGTCCTCAATAATC+AGG | - | tig0026171:30193-30212 | None:intergenic | 35.0% | |
| CAAACTATGCAGATTCTATC+AGG | - | tig0026171:30218-30237 | None:intergenic | 35.0% | |
| AAGAGTCGCATATTAATGGT+TGG | - | tig0026171:30412-30431 | None:intergenic | 35.0% | |
| TAGGAAGAGTCGCATATTAA+TGG | - | tig0026171:30416-30435 | None:intergenic | 35.0% | |
| AATATGCGACTCTTCCTAAA+TGG | + | tig0026171:30418-30437 | Msa1427190:three_prime_UTR | 35.0% | |
| TAGTGTCATGTCATGTGTGT+TGG | + | tig0026171:27773-27792 | Msa1427190:intron | 40.0% | |
| ACAACATCTTGAGTACCATC+AGG | - | tig0026171:27964-27983 | None:intergenic | 40.0% | |
| TCAATACTGTGGTGCACAAT+TGG | - | tig0026171:28118-28137 | None:intergenic | 40.0% | |
| ! | ATTGTGCACCACAGTATTGA+AGG | + | tig0026171:28118-28137 | Msa1427190:intron | 40.0% |
| ! | AGGTCACGGATTGAGTAAAT+AGG | - | tig0026171:28341-28360 | None:intergenic | 40.0% |
| AGTTGTTAAGAGCAAGACCT+AGG | + | tig0026171:28432-28451 | Msa1427190:intron | 40.0% | |
| TTTCCTTACCTAATGAAGCC+TGG | - | tig0026171:28821-28840 | None:intergenic | 40.0% | |
| TTCAGAAAGCAGTTGGAAAC+TGG | + | tig0026171:28905-28924 | Msa1427190:intron | 40.0% | |
| !! | ACTGGTGCTGATATAGTTAC+AGG | + | tig0026171:28923-28942 | Msa1427190:CDS | 40.0% |
| !! | CTGGTGCTGATATAGTTACA+GGG | + | tig0026171:28924-28943 | Msa1427190:CDS | 40.0% |
| CTGATATAGTTACAGGGACT+CGG | + | tig0026171:28930-28949 | Msa1427190:CDS | 40.0% | |
| ATGCGCAAACTAACAAGTAG+GGG | + | tig0026171:28989-29008 | Msa1427190:CDS | 40.0% | |
| ! | CAGATTTGACAGGGTCTTTT+AGG | + | tig0026171:29053-29072 | Msa1427190:CDS | 40.0% |
| AATCTCAAACCAGTCAACAG+GGG | - | tig0026171:29127-29146 | None:intergenic | 40.0% | |
| CAATCTCAAACCAGTCAACA+GGG | - | tig0026171:29128-29147 | None:intergenic | 40.0% | |
| TCAATCTCAAACCAGTCAAC+AGG | - | tig0026171:29129-29148 | None:intergenic | 40.0% | |
| ATAGTACGAGCATCCAGAAA+AGG | + | tig0026171:29245-29264 | Msa1427190:CDS | 40.0% | |
| TAGTACGAGCATCCAGAAAA+GGG | + | tig0026171:29246-29265 | Msa1427190:CDS | 40.0% | |
| CTTGTAGAGTAGATGGCTTA+AGG | + | tig0026171:29822-29841 | Msa1427190:intron | 40.0% | |
| CAGAGTGATAAGCTTGAACA+GGG | - | tig0026171:29956-29975 | None:intergenic | 40.0% | |
| ACAGAGTGATAAGCTTGAAC+AGG | - | tig0026171:29957-29976 | None:intergenic | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+GGG | + | tig0026171:30048-30067 | Msa1427190:CDS | 40.0% | |
| GTCGCATATTAATGGTTGGT+TGG | - | tig0026171:30408-30427 | None:intergenic | 40.0% | |
| AACTCGCCGGAGTTAGTTAT+CGG | + | tig0026171:27436-27455 | Msa1427190:five_prime_UTR | 45.0% | |
| AACGAGTTGCTCACTGTTTC+CGG | - | tig0026171:27465-27484 | None:intergenic | 45.0% | |
| AAGAGCAAGACCTAGGAAGA+TGG | + | tig0026171:28439-28458 | Msa1427190:CDS | 45.0% | |
| AGAGCAAGACCTAGGAAGAT+GGG | + | tig0026171:28440-28459 | Msa1427190:CDS | 45.0% | |
| ! | AGACCTAGGAAGATGGGTTT+AGG | + | tig0026171:28446-28465 | Msa1427190:CDS | 45.0% |
| ACACCTAAACCCATCTTCCT+AGG | - | tig0026171:28452-28471 | None:intergenic | 45.0% | |
| GTAGGTACGGCCTATATTCA+TGG | + | tig0026171:28535-28554 | Msa1427190:intron | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | + | tig0026171:28800-28819 | Msa1427190:intron | 45.0% | |
| TTGCCAGGCTTCATTAGGTA+AGG | + | tig0026171:28815-28834 | Msa1427190:intron | 45.0% | |
| ! | ACAGGGACTCGGTATGTTAA+AGG | + | tig0026171:28941-28960 | Msa1427190:CDS | 45.0% |
| ! | GCACAAACACTTTTATGGCC+CGG | + | tig0026171:29025-29044 | Msa1427190:CDS | 45.0% |
| GGTACCATATCAAAGAGGTG+CGG | + | tig0026171:29267-29286 | Msa1427190:intron | 45.0% | |
| GAAACCGCACCTCTTTGATA+TGG | - | tig0026171:29274-29293 | None:intergenic | 45.0% | |
| TGTATGTGCTCTGTCTGTTC+AGG | + | tig0026171:29502-29521 | Msa1427190:intron | 45.0% | |
| ATGCAACAGCCTATCCAAGT+GGG | - | tig0026171:29642-29661 | None:intergenic | 45.0% | |
| TTGGATAGGCTGTTGCATGT+TGG | + | tig0026171:29644-29663 | Msa1427190:intron | 45.0% | |
| TCAGACAGTTTGCAAAGCAC+AGG | - | tig0026171:29776-29795 | None:intergenic | 45.0% | |
| ATGGAAGTTCAAAGCTTGGG+GGG | + | tig0026171:30049-30068 | Msa1427190:CDS | 45.0% | |
| TGTTGAATACCTGAAAGGCC+TGG | + | tig0026171:30080-30099 | Msa1427190:CDS | 45.0% | |
| GAAGATATACCAGGCCTTTC+AGG | - | tig0026171:30092-30111 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | + | tig0026171:30273-30292 | Msa1427190:intron | 5.0% |
| ! | TCTAAAGGGCTCTAGTGCAG+CGG | - | tig0026171:27844-27863 | None:intergenic | 50.0% |
| ! | GGGACTCGGTATGTTAAAGG+CGG | + | tig0026171:28944-28963 | Msa1427190:CDS | 50.0% |
| ACTCGGTATGTTAAAGGCGG+TGG | + | tig0026171:28947-28966 | Msa1427190:CDS | 50.0% | |
| GTTAAAGGCGGTGGTGTACA+TGG | + | tig0026171:28956-28975 | Msa1427190:CDS | 50.0% | |
| ! | CCTGTCAAATCTGAGACACC+GGG | - | tig0026171:29046-29065 | None:intergenic | 50.0% |
| ! | CCCTGTCAAATCTGAGACAC+CGG | - | tig0026171:29047-29066 | None:intergenic | 50.0% |
| CCGGTGTCTCAGATTTGACA+GGG | + | tig0026171:29044-29063 | Msa1427190:CDS | 50.0% | |
| TTTGTTGCTCCCCTGTTGAC+TGG | + | tig0026171:29115-29134 | Msa1427190:intron | 50.0% | |
| AGGTGCGGTTTCTTACGTGA+GGG | + | tig0026171:29282-29301 | Msa1427190:intron | 50.0% | |
| CATGCAACAGCCTATCCAAG+TGG | - | tig0026171:29643-29662 | None:intergenic | 50.0% | |
| CGGTGGCCGATAACTAACTC+CGG | - | tig0026171:27445-27464 | None:intergenic | 55.0% | |
| CGGAGTTAGTTATCGGCCAC+CGG | + | tig0026171:27443-27462 | Msa1427190:five_prime_UTR | 55.0% | |
| GAGTTGCTCACTGTTTCCGG+TGG | - | tig0026171:27462-27481 | None:intergenic | 55.0% | |
| !! | GTGGATGATGGGAGTCCTGA+TGG | + | tig0026171:27946-27965 | Msa1427190:intron | 55.0% |
| CATGGCATGAAGCATGCGTC+CGG | + | tig0026171:28553-28572 | Msa1427190:CDS | 55.0% | |
| AAGGCGGTGGTGTACATGGA+TGG | + | tig0026171:28960-28979 | Msa1427190:CDS | 55.0% | |
| CCCGGTGTCTCAGATTTGAC+AGG | + | tig0026171:29043-29062 | Msa1427190:CDS | 55.0% | |
| GAGGTGCGGTTTCTTACGTG+AGG | + | tig0026171:29281-29300 | Msa1427190:intron | 55.0% | |
| TCGCGCTGAACTCAACTCGC+CGG | + | tig0026171:27423-27442 | Msa1427190:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026171 | gene | 27354 | 30444 | 27354 | ID=Msa1427190;Name=Msa1427190 |
| tig0026171 | mRNA | 27354 | 30444 | 27354 | ID=Msa1427190-mRNA-1;Parent=Msa1427190;Name=Msa1427190-mRNA-1;_AED=0.24;_eAED=0.24;_QI=126|0.77|0.9|1|0.55|0.5|10|277|223 |
| tig0026171 | exon | 27354 | 27470 | 27354 | ID=Msa1427190-mRNA-1:exon:5305;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 27590 | 27708 | 27590 | ID=Msa1427190-mRNA-1:exon:5306;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 27960 | 27999 | 27960 | ID=Msa1427190-mRNA-1:exon:5307;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 28434 | 28467 | 28434 | ID=Msa1427190-mRNA-1:exon:5308;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 28539 | 28615 | 28539 | ID=Msa1427190-mRNA-1:exon:5309;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 28806 | 28831 | 28806 | ID=Msa1427190-mRNA-1:exon:5310;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 28910 | 29074 | 28910 | ID=Msa1427190-mRNA-1:exon:5311;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 29169 | 29283 | 29169 | ID=Msa1427190-mRNA-1:exon:5312;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 30021 | 30250 | 30021 | ID=Msa1427190-mRNA-1:exon:5313;Parent=Msa1427190-mRNA-1 |
| tig0026171 | exon | 30293 | 30444 | 30293 | ID=Msa1427190-mRNA-1:exon:5314;Parent=Msa1427190-mRNA-1 |
| tig0026171 | five_prime_UTR | 27354 | 27470 | 27354 | ID=Msa1427190-mRNA-1:five_prime_utr;Parent=Msa1427190-mRNA-1 |
| tig0026171 | five_prime_UTR | 27590 | 27598 | 27590 | ID=Msa1427190-mRNA-1:five_prime_utr;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 27599 | 27708 | 27599 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 27960 | 27999 | 27960 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 28434 | 28467 | 28434 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 28539 | 28615 | 28539 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 28806 | 28831 | 28806 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 28910 | 29074 | 28910 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 29169 | 29283 | 29169 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | CDS | 30021 | 30125 | 30021 | ID=Msa1427190-mRNA-1:cds;Parent=Msa1427190-mRNA-1 |
| tig0026171 | three_prime_UTR | 30126 | 30250 | 30126 | ID=Msa1427190-mRNA-1:three_prime_utr;Parent=Msa1427190-mRNA-1 |
| tig0026171 | three_prime_UTR | 30293 | 30444 | 30293 | ID=Msa1427190-mRNA-1:three_prime_utr;Parent=Msa1427190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
