Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266260 | XP_003597730.1 | 95.906 | 171 | 6 | 1 | 1 | 170 | 1 | 171 | 2.38e-119 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266260 | sp|Q9M815|PCR8_ARATH | 64.000 | 150 | 53 | 1 | 21 | 170 | 42 | 190 | 3.94e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266260 | Q2HU50 | 95.906 | 171 | 6 | 1 | 1 | 170 | 1 | 171 | 1.14e-119 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0266260 | 0.807639 | 4.582019e-50 | -8.615850e-47 |
| Msa0059880 | Msa0266260 | 0.816759 | 4.685041e-52 | -8.615850e-47 |
| Msa0150910 | Msa0266260 | 0.814619 | 1.404973e-51 | -8.615850e-47 |
| Msa0150920 | Msa0266260 | 0.812253 | 4.653280e-51 | -8.615850e-47 |
| Msa0266260 | Msa0287720 | 0.855899 | 4.627241e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266260 | MtrunA17_Chr2g0331531 | 95.906 | 171 | 6 | 1 | 1 | 170 | 1 | 171 | 2.19e-123 | 344 |
| Msa0266260 | MtrunA17_Chr4g0045011 | 40.458 | 131 | 78 | 0 | 32 | 162 | 64 | 194 | 1.33e-29 | 107 |
| Msa0266260 | MtrunA17_Chr8g0391441 | 34.911 | 169 | 107 | 1 | 2 | 170 | 4 | 169 | 4.23e-28 | 102 |
| Msa0266260 | MtrunA17_Chr4g0045001 | 42.149 | 121 | 66 | 1 | 25 | 141 | 40 | 160 | 1.19e-26 | 99.0 |
| Msa0266260 | MtrunA17_Chr8g0391431 | 38.938 | 113 | 69 | 0 | 32 | 144 | 52 | 164 | 3.61e-26 | 98.6 |
| Msa0266260 | MtrunA17_Chr1g0187341 | 46.903 | 113 | 59 | 1 | 32 | 144 | 12 | 123 | 9.22e-26 | 95.9 |
| Msa0266260 | MtrunA17_Chr5g0402421 | 37.931 | 116 | 69 | 1 | 32 | 144 | 52 | 167 | 1.06e-24 | 94.7 |
| Msa0266260 | MtrunA17_Chr6g0484871 | 37.795 | 127 | 74 | 2 | 20 | 142 | 2 | 127 | 1.14e-22 | 88.2 |
| Msa0266260 | MtrunA17_Chr8g0391401 | 37.600 | 125 | 68 | 3 | 25 | 143 | 2 | 122 | 5.75e-21 | 84.0 |
| Msa0266260 | MtrunA17_Chr5g0405841 | 30.714 | 140 | 74 | 3 | 32 | 168 | 295 | 414 | 6.17e-12 | 62.8 |
| Msa0266260 | MtrunA17_Chr2g0280931 | 28.571 | 140 | 68 | 6 | 32 | 144 | 76 | 210 | 1.09e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0266260 | AT1G52200.1 | 64.000 | 150 | 53 | 1 | 21 | 170 | 42 | 190 | 4.00e-72 | 216 |
| Msa0266260 | AT1G52200.2 | 65.891 | 129 | 44 | 0 | 21 | 149 | 42 | 170 | 3.15e-65 | 198 |
| Msa0266260 | AT1G49030.1 | 44.898 | 147 | 79 | 1 | 22 | 168 | 78 | 222 | 6.19e-37 | 127 |
| Msa0266260 | AT3G18470.1 | 47.788 | 113 | 59 | 0 | 32 | 144 | 5 | 117 | 1.39e-36 | 123 |
| Msa0266260 | AT3G18460.1 | 40.580 | 138 | 75 | 2 | 32 | 169 | 54 | 184 | 9.63e-35 | 120 |
| Msa0266260 | AT3G18450.1 | 40.559 | 143 | 79 | 3 | 26 | 168 | 46 | 182 | 5.67e-32 | 113 |
| Msa0266260 | AT1G58320.1 | 51.327 | 113 | 53 | 2 | 32 | 143 | 17 | 128 | 4.19e-31 | 110 |
| Msa0266260 | AT1G68630.1 | 41.441 | 111 | 64 | 1 | 32 | 142 | 29 | 138 | 1.21e-27 | 101 |
| Msa0266260 | AT5G35525.1 | 35.252 | 139 | 88 | 1 | 32 | 170 | 16 | 152 | 6.85e-27 | 99.8 |
| Msa0266260 | AT1G14870.1 | 35.971 | 139 | 87 | 1 | 32 | 170 | 16 | 152 | 1.24e-26 | 99.0 |
| Msa0266260 | AT1G14880.1 | 33.813 | 139 | 90 | 1 | 32 | 170 | 15 | 151 | 7.75e-24 | 91.7 |
| Msa0266260 | AT1G14870.2 | 40.000 | 110 | 66 | 0 | 32 | 141 | 16 | 125 | 1.53e-23 | 90.5 |
| Msa0266260 | AT1G68610.1 | 37.324 | 142 | 84 | 3 | 32 | 170 | 19 | 158 | 9.58e-21 | 84.0 |
| Msa0266260 | AT2G40935.8 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0266260 | AT2G40935.9 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0266260 | AT2G40935.1 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0266260 | AT2G40935.6 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0266260 | AT2G40935.5 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0266260 | AT2G40935.3 | 34.694 | 98 | 47 | 2 | 51 | 132 | 55 | 151 | 4.28e-12 | 61.6 |
| Msa0266260 | AT2G40935.2 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.88e-12 | 60.5 |
| Msa0266260 | AT2G40935.7 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.88e-12 | 60.5 |
| Msa0266260 | AT2G40935.4 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.88e-12 | 60.5 |
| Msa0266260 | AT4G35920.1 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0266260 | AT4G35920.5 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0266260 | AT4G35920.4 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0266260 | AT4G35920.2 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0266260 | AT4G35920.3 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGATATTACCATTTGTT+TGG | 0.364288 | 2_2:+66752650 | None:intergenic |
| GTTAAGGAAGAAGTATGATT+TGG | 0.371388 | 2_2:-66751816 | Msa0266260:CDS |
| TTCAGAGAGCTCAAAATTAG+AGG | 0.383494 | 2_2:-66751728 | Msa0266260:CDS |
| TTTGTGCACACAATGGATTA+TGG | 0.383643 | 2_2:-66751858 | Msa0266260:CDS |
| TTGTGCACACAATGGATTAT+GGG | 0.412784 | 2_2:-66751857 | Msa0266260:CDS |
| ATAATGTAAGGTTGCCATCT+TGG | 0.416334 | 2_2:-66751911 | Msa0266260:intron |
| GTGAGAAATCACATCTGAAT+GGG | 0.426891 | 2_2:+66751784 | None:intergenic |
| GAGGGAGGTTTGTTCAATGT+TGG | 0.461561 | 2_2:+66751545 | None:intergenic |
| AGAGGACTTGACCCTGCTCT+TGG | 0.473756 | 2_2:-66751710 | Msa0266260:intron |
| CAAAGTATAGAACAAAGTTA+AGG | 0.474519 | 2_2:-66751832 | Msa0266260:CDS |
| TGGACAGATAGCAGAAGTAT+TGG | 0.475164 | 2_2:-66752028 | Msa0266260:CDS |
| GTGAATTAAATACCAAGAGC+AGG | 0.481342 | 2_2:+66751698 | None:intergenic |
| GTAGGGAGTCCATGGAGTAC+TGG | 0.489984 | 2_2:-66752694 | Msa0266260:CDS |
| CTAATACAATTCAGCAAGTA+GGG | 0.490574 | 2_2:-66752711 | Msa0266260:CDS |
| GCTAATACAATTCAGCAAGT+AGG | 0.494698 | 2_2:-66752712 | Msa0266260:CDS |
| TTAGACATGAATTGAGTTGA+GGG | 0.500404 | 2_2:+66751527 | None:intergenic |
| AAGGAAGAAGTATGATTTGG+TGG | 0.502714 | 2_2:-66751813 | Msa0266260:CDS |
| TGTGAGAAATCACATCTGAA+TGG | 0.503142 | 2_2:+66751783 | None:intergenic |
| ATCCATTGTGTGCACAAAGC+AGG | 0.505668 | 2_2:+66751863 | None:intergenic |
| CTCTCTGAACTCTTGACATA+GGG | 0.516209 | 2_2:+66751742 | None:intergenic |
| ACAAAGCAGGCATCATTAGC+AGG | 0.519823 | 2_2:+66751876 | None:intergenic |
| TTCAGCAAGTAGGGAGTCCA+TGG | 0.521718 | 2_2:-66752702 | Msa0266260:CDS |
| TCATACCTTGAGCCAACAGC+AGG | 0.522584 | 2_2:+66752736 | None:intergenic |
| TGTCATGAGAACCAAACAAA+TGG | 0.529201 | 2_2:-66752661 | Msa0266260:intron |
| GCTCTCTGAACTCTTGACAT+AGG | 0.530518 | 2_2:+66751741 | None:intergenic |
| CTTAGACATGAATTGAGTTG+AGG | 0.545566 | 2_2:+66751526 | None:intergenic |
| CAGCAGCAGGAACCTGCTGT+TGG | 0.559449 | 2_2:-66752748 | Msa0266260:CDS |
| GGAGCAGAAGACTCAGCAGC+AGG | 0.577516 | 2_2:-66752761 | Msa0266260:CDS |
| GGTAAATGAAGCTTCCAAGA+TGG | 0.581380 | 2_2:+66751897 | None:intergenic |
| AGGAACCTGCTGTTGGCTCA+AGG | 0.588955 | 2_2:-66752741 | Msa0266260:CDS |
| TCAAATAGTCCAGTACTCCA+TGG | 0.612473 | 2_2:+66752685 | None:intergenic |
| CAGATAGCAGAAGTATTGGA+TGG | 0.622869 | 2_2:-66752024 | Msa0266260:CDS |
| CTGAGTCTTCTGCTCCTCAG+TGG | 0.624099 | 2_2:+66752768 | None:intergenic |
| GACATGAATTGAGTTGAGGG+AGG | 0.624985 | 2_2:+66751530 | None:intergenic |
| TGAATTAAATACCAAGAGCA+GGG | 0.629149 | 2_2:+66751699 | None:intergenic |
| ATCTGTCCAAATGTTACACA+AGG | 0.643300 | 2_2:+66752042 | None:intergenic |
| TGCCTGCTTTGTGCACACAA+TGG | 0.656127 | 2_2:-66751865 | Msa0266260:CDS |
| ATAGCAGAAGTATTGGATGG+TGG | 0.672429 | 2_2:-66752021 | Msa0266260:CDS |
| TGAGAAATCACATCTGAATG+GGG | 0.681355 | 2_2:+66751785 | None:intergenic |
| AAGGGAGATGCAGACCACTG+AGG | 0.731299 | 2_2:-66752782 | None:intergenic |
| TCTTGACATAGGGAACAACA+AGG | 0.757057 | 2_2:+66751752 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATACCTTTTTTTATA+TGG | - | chr2_2:66752206-66752225 | Msa0266260:intron | 10.0% |
| !!! | ATTTTATTTAATCAAATACA+TGG | + | chr2_2:66752338-66752357 | None:intergenic | 10.0% |
| !!! | TATATATACCTTTTTTTATA+TGG | - | chr2_2:66752206-66752225 | Msa0266260:intron | 10.0% |
| !!! | ATTTTATTTAATCAAATACA+TGG | + | chr2_2:66752338-66752357 | None:intergenic | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr2_2:66751926-66751945 | Msa0266260:intron | 15.0% |
| !! | TTGTTAATTGTAATAATGTA+AGG | - | chr2_2:66752375-66752394 | Msa0266260:intron | 15.0% |
| !! | TTTATTCATCAAATATAAAG+TGG | + | chr2_2:66752628-66752647 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr2_2:66751926-66751945 | Msa0266260:intron | 15.0% |
| !! | TTGTTAATTGTAATAATGTA+AGG | - | chr2_2:66752375-66752394 | Msa0266260:intron | 15.0% |
| !! | TTTATTCATCAAATATAAAG+TGG | + | chr2_2:66752628-66752647 | None:intergenic | 15.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | - | chr2_2:66751757-66751776 | Msa0266260:CDS | 20.0% |
| !! | CAATGAAATAAAAATGTGTT+TGG | + | chr2_2:66752087-66752106 | None:intergenic | 20.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | - | chr2_2:66751757-66751776 | Msa0266260:CDS | 20.0% |
| !! | CAATGAAATAAAAATGTGTT+TGG | + | chr2_2:66752087-66752106 | None:intergenic | 20.0% |
| ! | AGAAGATATTACCATTTGTT+TGG | + | chr2_2:66751651-66751670 | None:intergenic | 25.0% |
| ! | AAACAAACTAAGTAGTTCAA+TGG | + | chr2_2:66751685-66751704 | None:intergenic | 25.0% |
| ! | ATTACTTAAGAACTTCAACA+AGG | + | chr2_2:66751793-66751812 | None:intergenic | 25.0% |
| ! | ACAATTCATAGTTCATAGTA+GGG | + | chr2_2:66752025-66752044 | None:intergenic | 25.0% |
| ! | AACAATTCATAGTTCATAGT+AGG | + | chr2_2:66752026-66752045 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTGTAATATGC+AGG | - | chr2_2:66752104-66752123 | Msa0266260:intron | 25.0% |
| ! | AATCAAATACATGGTGATTT+GGG | + | chr2_2:66752329-66752348 | None:intergenic | 25.0% |
| ! | TAATCAAATACATGGTGATT+TGG | + | chr2_2:66752330-66752349 | None:intergenic | 25.0% |
| ! | CAAAGTATAGAACAAAGTTA+AGG | - | chr2_2:66752466-66752485 | Msa0266260:intron | 25.0% |
| ! | ATTCATCAAATATAAAGTGG+AGG | + | chr2_2:66752625-66752644 | None:intergenic | 25.0% |
| !!! | ATAACAAATTTTTTGAGTGC+AGG | - | chr2_2:66752684-66752703 | Msa0266260:CDS | 25.0% |
| !!! | TAACAAATTTTTTGAGTGCA+GGG | - | chr2_2:66752685-66752704 | Msa0266260:CDS | 25.0% |
| ! | AGAAGATATTACCATTTGTT+TGG | + | chr2_2:66751651-66751670 | None:intergenic | 25.0% |
| ! | AAACAAACTAAGTAGTTCAA+TGG | + | chr2_2:66751685-66751704 | None:intergenic | 25.0% |
| ! | ATTACTTAAGAACTTCAACA+AGG | + | chr2_2:66751793-66751812 | None:intergenic | 25.0% |
| ! | ACAATTCATAGTTCATAGTA+GGG | + | chr2_2:66752025-66752044 | None:intergenic | 25.0% |
| ! | AACAATTCATAGTTCATAGT+AGG | + | chr2_2:66752026-66752045 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTGTAATATGC+AGG | - | chr2_2:66752104-66752123 | Msa0266260:intron | 25.0% |
| ! | AATCAAATACATGGTGATTT+GGG | + | chr2_2:66752329-66752348 | None:intergenic | 25.0% |
| ! | TAATCAAATACATGGTGATT+TGG | + | chr2_2:66752330-66752349 | None:intergenic | 25.0% |
| ! | CAAAGTATAGAACAAAGTTA+AGG | - | chr2_2:66752466-66752485 | Msa0266260:intron | 25.0% |
| ! | ATTCATCAAATATAAAGTGG+AGG | + | chr2_2:66752625-66752644 | None:intergenic | 25.0% |
| !!! | ATAACAAATTTTTTGAGTGC+AGG | - | chr2_2:66752684-66752703 | Msa0266260:CDS | 25.0% |
| !!! | TAACAAATTTTTTGAGTGCA+GGG | - | chr2_2:66752685-66752704 | Msa0266260:CDS | 25.0% |
| CTAATACAATTCAGCAAGTA+GGG | - | chr2_2:66751587-66751606 | Msa0266260:CDS | 30.0% | |
| TTAAGTAATTCTTGAGCACA+TGG | - | chr2_2:66751804-66751823 | Msa0266260:CDS | 30.0% | |
| ! | ACACTTTCAATTTGAAGTGT+CGG | + | chr2_2:66751852-66751871 | None:intergenic | 30.0% |
| GCTGCAAACCATATAAAAAA+AGG | + | chr2_2:66752217-66752236 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTGTGTAACATT+TGG | - | chr2_2:66752250-66752269 | Msa0266260:intron | 30.0% |
| ! | GTTAAGGAAGAAGTATGATT+TGG | - | chr2_2:66752482-66752501 | Msa0266260:intron | 30.0% |
| TGAATTAAATACCAAGAGCA+GGG | + | chr2_2:66752602-66752621 | None:intergenic | 30.0% | |
| !! | TTAGACATGAATTGAGTTGA+GGG | + | chr2_2:66752774-66752793 | None:intergenic | 30.0% |
| CTAATACAATTCAGCAAGTA+GGG | - | chr2_2:66751587-66751606 | Msa0266260:CDS | 30.0% | |
| TTAAGTAATTCTTGAGCACA+TGG | - | chr2_2:66751804-66751823 | Msa0266260:CDS | 30.0% | |
| ! | ACACTTTCAATTTGAAGTGT+CGG | + | chr2_2:66751852-66751871 | None:intergenic | 30.0% |
| GCTGCAAACCATATAAAAAA+AGG | + | chr2_2:66752217-66752236 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTGTGTAACATT+TGG | - | chr2_2:66752250-66752269 | Msa0266260:intron | 30.0% |
| ! | GTTAAGGAAGAAGTATGATT+TGG | - | chr2_2:66752482-66752501 | Msa0266260:intron | 30.0% |
| TGAATTAAATACCAAGAGCA+GGG | + | chr2_2:66752602-66752621 | None:intergenic | 30.0% | |
| !! | TTAGACATGAATTGAGTTGA+GGG | + | chr2_2:66752774-66752793 | None:intergenic | 30.0% |
| GCTAATACAATTCAGCAAGT+AGG | - | chr2_2:66751586-66751605 | Msa0266260:CDS | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | - | chr2_2:66751637-66751656 | Msa0266260:intron | 35.0% | |
| ! | GGTGCTACATATATTTGTGA+CGG | + | chr2_2:66751831-66751850 | None:intergenic | 35.0% |
| TGTTCATGTCATGTCTGTAT+TGG | - | chr2_2:66751966-66751985 | Msa0266260:intron | 35.0% | |
| ATCTGTCCAAATGTTACACA+AGG | + | chr2_2:66752259-66752278 | None:intergenic | 35.0% | |
| ATAATGTAAGGTTGCCATCT+TGG | - | chr2_2:66752387-66752406 | Msa0266260:intron | 35.0% | |
| !! | TTTGTGCACACAATGGATTA+TGG | - | chr2_2:66752440-66752459 | Msa0266260:intron | 35.0% |
| !! | TTGTGCACACAATGGATTAT+GGG | - | chr2_2:66752441-66752460 | Msa0266260:intron | 35.0% |
| ! | AAGGAAGAAGTATGATTTGG+TGG | - | chr2_2:66752485-66752504 | Msa0266260:intron | 35.0% |
| TGAGAAATCACATCTGAATG+GGG | + | chr2_2:66752516-66752535 | None:intergenic | 35.0% | |
| GTGAGAAATCACATCTGAAT+GGG | + | chr2_2:66752517-66752536 | None:intergenic | 35.0% | |
| TGTGAGAAATCACATCTGAA+TGG | + | chr2_2:66752518-66752537 | None:intergenic | 35.0% | |
| TTCAGAGAGCTCAAAATTAG+AGG | - | chr2_2:66752570-66752589 | Msa0266260:intron | 35.0% | |
| GTGAATTAAATACCAAGAGC+AGG | + | chr2_2:66752603-66752622 | None:intergenic | 35.0% | |
| ! | CTTAGACATGAATTGAGTTG+AGG | + | chr2_2:66752775-66752794 | None:intergenic | 35.0% |
| GCTAATACAATTCAGCAAGT+AGG | - | chr2_2:66751586-66751605 | Msa0266260:CDS | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | - | chr2_2:66751637-66751656 | Msa0266260:intron | 35.0% | |
| ! | GGTGCTACATATATTTGTGA+CGG | + | chr2_2:66751831-66751850 | None:intergenic | 35.0% |
| TGTTCATGTCATGTCTGTAT+TGG | - | chr2_2:66751966-66751985 | Msa0266260:intron | 35.0% | |
| ATCTGTCCAAATGTTACACA+AGG | + | chr2_2:66752259-66752278 | None:intergenic | 35.0% | |
| ATAATGTAAGGTTGCCATCT+TGG | - | chr2_2:66752387-66752406 | Msa0266260:intron | 35.0% | |
| !! | TTTGTGCACACAATGGATTA+TGG | - | chr2_2:66752440-66752459 | Msa0266260:intron | 35.0% |
| !! | TTGTGCACACAATGGATTAT+GGG | - | chr2_2:66752441-66752460 | Msa0266260:intron | 35.0% |
| ! | AAGGAAGAAGTATGATTTGG+TGG | - | chr2_2:66752485-66752504 | Msa0266260:intron | 35.0% |
| TGAGAAATCACATCTGAATG+GGG | + | chr2_2:66752516-66752535 | None:intergenic | 35.0% | |
| GTGAGAAATCACATCTGAAT+GGG | + | chr2_2:66752517-66752536 | None:intergenic | 35.0% | |
| TGTGAGAAATCACATCTGAA+TGG | + | chr2_2:66752518-66752537 | None:intergenic | 35.0% | |
| TTCAGAGAGCTCAAAATTAG+AGG | - | chr2_2:66752570-66752589 | Msa0266260:intron | 35.0% | |
| GTGAATTAAATACCAAGAGC+AGG | + | chr2_2:66752603-66752622 | None:intergenic | 35.0% | |
| ! | CTTAGACATGAATTGAGTTG+AGG | + | chr2_2:66752775-66752794 | None:intergenic | 35.0% |
| TCAAATAGTCCAGTACTCCA+TGG | + | chr2_2:66751616-66751635 | None:intergenic | 40.0% | |
| ! | TGGACAGATAGCAGAAGTAT+TGG | - | chr2_2:66752270-66752289 | Msa0266260:intron | 40.0% |
| !! | CAGATAGCAGAAGTATTGGA+TGG | - | chr2_2:66752274-66752293 | Msa0266260:intron | 40.0% |
| !! | ATAGCAGAAGTATTGGATGG+TGG | - | chr2_2:66752277-66752296 | Msa0266260:intron | 40.0% |
| GGTAAATGAAGCTTCCAAGA+TGG | + | chr2_2:66752404-66752423 | None:intergenic | 40.0% | |
| TCTTGACATAGGGAACAACA+AGG | + | chr2_2:66752549-66752568 | None:intergenic | 40.0% | |
| CTCTCTGAACTCTTGACATA+GGG | + | chr2_2:66752559-66752578 | None:intergenic | 40.0% | |
| !!! | CAAATTTTTTGAGTGCAGGG+TGG | - | chr2_2:66752688-66752707 | Msa0266260:CDS | 40.0% |
| TCAAATAGTCCAGTACTCCA+TGG | + | chr2_2:66751616-66751635 | None:intergenic | 40.0% | |
| ! | TGGACAGATAGCAGAAGTAT+TGG | - | chr2_2:66752270-66752289 | Msa0266260:intron | 40.0% |
| !! | CAGATAGCAGAAGTATTGGA+TGG | - | chr2_2:66752274-66752293 | Msa0266260:intron | 40.0% |
| !! | ATAGCAGAAGTATTGGATGG+TGG | - | chr2_2:66752277-66752296 | Msa0266260:intron | 40.0% |
| GGTAAATGAAGCTTCCAAGA+TGG | + | chr2_2:66752404-66752423 | None:intergenic | 40.0% | |
| TCTTGACATAGGGAACAACA+AGG | + | chr2_2:66752549-66752568 | None:intergenic | 40.0% | |
| CTCTCTGAACTCTTGACATA+GGG | + | chr2_2:66752559-66752578 | None:intergenic | 40.0% | |
| !!! | CAAATTTTTTGAGTGCAGGG+TGG | - | chr2_2:66752688-66752707 | Msa0266260:CDS | 40.0% |
| ! | TGGTGATTTGGGAGTTAGAG+AGG | + | chr2_2:66752318-66752337 | None:intergenic | 45.0% |
| ACAAAGCAGGCATCATTAGC+AGG | + | chr2_2:66752425-66752444 | None:intergenic | 45.0% | |
| ATCCATTGTGTGCACAAAGC+AGG | + | chr2_2:66752438-66752457 | None:intergenic | 45.0% | |
| GCTCTCTGAACTCTTGACAT+AGG | + | chr2_2:66752560-66752579 | None:intergenic | 45.0% | |
| !!! | TTTTTGAGTGCAGGGTGGAA+TGG | - | chr2_2:66752693-66752712 | Msa0266260:CDS | 45.0% |
| ! | GAGGGAGGTTTGTTCAATGT+TGG | + | chr2_2:66752756-66752775 | None:intergenic | 45.0% |
| !! | GACATGAATTGAGTTGAGGG+AGG | + | chr2_2:66752771-66752790 | None:intergenic | 45.0% |
| ! | TGGTGATTTGGGAGTTAGAG+AGG | + | chr2_2:66752318-66752337 | None:intergenic | 45.0% |
| ACAAAGCAGGCATCATTAGC+AGG | + | chr2_2:66752425-66752444 | None:intergenic | 45.0% | |
| ATCCATTGTGTGCACAAAGC+AGG | + | chr2_2:66752438-66752457 | None:intergenic | 45.0% | |
| GCTCTCTGAACTCTTGACAT+AGG | + | chr2_2:66752560-66752579 | None:intergenic | 45.0% | |
| !!! | TTTTTGAGTGCAGGGTGGAA+TGG | - | chr2_2:66752693-66752712 | Msa0266260:CDS | 45.0% |
| ! | GAGGGAGGTTTGTTCAATGT+TGG | + | chr2_2:66752756-66752775 | None:intergenic | 45.0% |
| !! | GACATGAATTGAGTTGAGGG+AGG | + | chr2_2:66752771-66752790 | None:intergenic | 45.0% |
| TCATACCTTGAGCCAACAGC+AGG | + | chr2_2:66751565-66751584 | None:intergenic | 50.0% | |
| TTCAGCAAGTAGGGAGTCCA+TGG | - | chr2_2:66751596-66751615 | Msa0266260:intron | 50.0% | |
| GTCAGACACAGATGACGTGT+TGG | + | chr2_2:66751877-66751896 | None:intergenic | 50.0% | |
| TGCCTGCTTTGTGCACACAA+TGG | - | chr2_2:66752433-66752452 | Msa0266260:intron | 50.0% | |
| TCATACCTTGAGCCAACAGC+AGG | + | chr2_2:66751565-66751584 | None:intergenic | 50.0% | |
| TTCAGCAAGTAGGGAGTCCA+TGG | - | chr2_2:66751596-66751615 | Msa0266260:intron | 50.0% | |
| GTCAGACACAGATGACGTGT+TGG | + | chr2_2:66751877-66751896 | None:intergenic | 50.0% | |
| TGCCTGCTTTGTGCACACAA+TGG | - | chr2_2:66752433-66752452 | Msa0266260:intron | 50.0% | |
| CTGAGTCTTCTGCTCCTCAG+TGG | + | chr2_2:66751533-66751552 | None:intergenic | 55.0% | |
| !! | AGGAACCTGCTGTTGGCTCA+AGG | - | chr2_2:66751557-66751576 | Msa0266260:CDS | 55.0% |
| GTAGGGAGTCCATGGAGTAC+TGG | - | chr2_2:66751604-66751623 | Msa0266260:intron | 55.0% | |
| AGAGGACTTGACCCTGCTCT+TGG | - | chr2_2:66752588-66752607 | Msa0266260:intron | 55.0% | |
| CTGAGTCTTCTGCTCCTCAG+TGG | + | chr2_2:66751533-66751552 | None:intergenic | 55.0% | |
| !! | AGGAACCTGCTGTTGGCTCA+AGG | - | chr2_2:66751557-66751576 | Msa0266260:CDS | 55.0% |
| GTAGGGAGTCCATGGAGTAC+TGG | - | chr2_2:66751604-66751623 | Msa0266260:intron | 55.0% | |
| AGAGGACTTGACCCTGCTCT+TGG | - | chr2_2:66752588-66752607 | Msa0266260:intron | 55.0% | |
| GGAGCAGAAGACTCAGCAGC+AGG | - | chr2_2:66751537-66751556 | Msa0266260:CDS | 60.0% | |
| CAGCAGCAGGAACCTGCTGT+TGG | - | chr2_2:66751550-66751569 | Msa0266260:CDS | 60.0% | |
| GGAGCAGAAGACTCAGCAGC+AGG | - | chr2_2:66751537-66751556 | Msa0266260:CDS | 60.0% | |
| CAGCAGCAGGAACCTGCTGT+TGG | - | chr2_2:66751550-66751569 | Msa0266260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 66751523 | 66752797 | 66751523 | ID=Msa0266260;Name=Msa0266260 |
| chr2_2 | mRNA | 66751523 | 66752797 | 66751523 | ID=Msa0266260-mRNA-1;Parent=Msa0266260;Name=Msa0266260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|170 |
| chr2_2 | exon | 66752662 | 66752797 | 66752662 | ID=Msa0266260-mRNA-1:exon:21245;Parent=Msa0266260-mRNA-1 |
| chr2_2 | exon | 66752013 | 66752084 | 66752013 | ID=Msa0266260-mRNA-1:exon:21244;Parent=Msa0266260-mRNA-1 |
| chr2_2 | exon | 66751711 | 66751923 | 66751711 | ID=Msa0266260-mRNA-1:exon:21243;Parent=Msa0266260-mRNA-1 |
| chr2_2 | exon | 66751523 | 66751614 | 66751523 | ID=Msa0266260-mRNA-1:exon:21242;Parent=Msa0266260-mRNA-1 |
| chr2_2 | CDS | 66752662 | 66752797 | 66752662 | ID=Msa0266260-mRNA-1:cds;Parent=Msa0266260-mRNA-1 |
| chr2_2 | CDS | 66752013 | 66752084 | 66752013 | ID=Msa0266260-mRNA-1:cds;Parent=Msa0266260-mRNA-1 |
| chr2_2 | CDS | 66751711 | 66751923 | 66751711 | ID=Msa0266260-mRNA-1:cds;Parent=Msa0266260-mRNA-1 |
| chr2_2 | CDS | 66751523 | 66751614 | 66751523 | ID=Msa0266260-mRNA-1:cds;Parent=Msa0266260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
