Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287720 | XP_003597730.1 | 95.906 | 171 | 6 | 1 | 1 | 170 | 1 | 171 | 2.38e-119 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287720 | sp|Q9M815|PCR8_ARATH | 64.000 | 150 | 53 | 1 | 21 | 170 | 42 | 190 | 3.94e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0287720 | 0.845093 | 5.033800e-59 | -8.615850e-47 |
| Msa0027860 | Msa0287720 | 0.820820 | 5.604779e-53 | -8.615850e-47 |
| Msa0046390 | Msa0287720 | 0.809877 | 1.522383e-50 | -8.615850e-47 |
| Msa0048950 | Msa0287720 | 0.819672 | 1.027057e-52 | -8.615850e-47 |
| Msa0059880 | Msa0287720 | 0.880222 | 6.555127e-70 | -8.615850e-47 |
| Msa0064990 | Msa0287720 | 0.807054 | 6.095338e-50 | -8.615850e-47 |
| Msa0072940 | Msa0287720 | 0.827954 | 1.176147e-54 | -8.615850e-47 |
| Msa0075560 | Msa0287720 | 0.801520 | 8.660390e-49 | -8.615850e-47 |
| Msa0085110 | Msa0287720 | 0.806565 | 7.735430e-50 | -8.615850e-47 |
| Msa0112620 | Msa0287720 | 0.808413 | 3.135464e-50 | -8.615850e-47 |
| Msa0114610 | Msa0287720 | 0.802360 | 5.820542e-49 | -8.615850e-47 |
| Msa0123530 | Msa0287720 | 0.819823 | 9.488101e-53 | -8.615850e-47 |
| Msa0134570 | Msa0287720 | 0.804896 | 1.733532e-49 | -8.615850e-47 |
| Msa0140270 | Msa0287720 | 0.804659 | 1.942513e-49 | -8.615850e-47 |
| Msa0150910 | Msa0287720 | 0.876562 | 1.265328e-68 | -8.615850e-47 |
| Msa0150920 | Msa0287720 | 0.858639 | 7.173874e-63 | -8.615850e-47 |
| Msa0155850 | Msa0287720 | 0.823018 | 1.735567e-53 | -8.615850e-47 |
| Msa0168010 | Msa0287720 | 0.800454 | 1.430159e-48 | -8.615850e-47 |
| Msa0177550 | Msa0287720 | 0.850266 | 1.897410e-60 | -8.615850e-47 |
| Msa0190670 | Msa0287720 | 0.842166 | 3.051732e-58 | -8.615850e-47 |
| Msa0194230 | Msa0287720 | 0.826531 | 2.578370e-54 | -8.615850e-47 |
| Msa0207640 | Msa0287720 | 0.823261 | 1.523648e-53 | -8.615850e-47 |
| Msa0207970 | Msa0287720 | 0.814973 | 1.172463e-51 | -8.615850e-47 |
| Msa0212550 | Msa0287720 | 0.843820 | 1.107680e-58 | -8.615850e-47 |
| Msa0252930 | Msa0287720 | 0.840713 | 7.367311e-58 | -8.615850e-47 |
| Msa0259110 | Msa0287720 | 0.800317 | 1.525138e-48 | -8.615850e-47 |
| Msa0266260 | Msa0287720 | 0.855899 | 4.627241e-62 | -8.615850e-47 |
| Msa0272210 | Msa0287720 | 0.809442 | 1.888824e-50 | -8.615850e-47 |
| Msa0274250 | Msa0287720 | 0.845383 | 4.203395e-59 | -8.615850e-47 |
| Msa0274260 | Msa0287720 | 0.845509 | 3.885858e-59 | -8.615850e-47 |
| Msa0278460 | Msa0287720 | 0.804550 | 2.047257e-49 | -8.615850e-47 |
| Msa0278950 | Msa0287720 | 0.817994 | 2.470894e-52 | -8.615850e-47 |
| Msa0281190 | Msa0287720 | 0.809245 | 2.081600e-50 | -8.615850e-47 |
| Msa0287720 | Msa0298270 | 0.802982 | 4.332392e-49 | -8.615850e-47 |
| Msa0287720 | Msa0314440 | 0.830775 | 2.428230e-55 | -8.615850e-47 |
| Msa0287720 | Msa0327890 | 0.821913 | 3.135863e-53 | -8.615850e-47 |
| Msa0287720 | Msa0328090 | 0.810437 | 1.153395e-50 | -8.615850e-47 |
| Msa0287720 | Msa0342130 | 0.802796 | 4.732520e-49 | -8.615850e-47 |
| Msa0287720 | Msa0346170 | 0.835521 | 1.599136e-56 | -8.615850e-47 |
| Msa0287720 | Msa0348370 | 0.803633 | 3.176771e-49 | -8.615850e-47 |
| Msa0287720 | Msa0349910 | 0.815463 | 9.126138e-52 | -8.615850e-47 |
| Msa0287720 | Msa0366510 | 0.825494 | 4.546826e-54 | -8.615850e-47 |
| Msa0287720 | Msa0374040 | 0.823332 | 1.466545e-53 | -8.615850e-47 |
| Msa0287720 | Msa0398770 | 0.800335 | 1.512602e-48 | -8.615850e-47 |
| Msa0287720 | Msa0414480 | 0.816375 | 5.711077e-52 | -8.615850e-47 |
| Msa0287720 | Msa0418160 | 0.825484 | 4.570817e-54 | -8.615850e-47 |
| Msa0287720 | Msa0459300 | 0.806831 | 6.795293e-50 | -8.615850e-47 |
| Msa0287720 | Msa0464310 | 0.815487 | 9.015277e-52 | -8.615850e-47 |
| Msa0287720 | Msa0491770 | 0.802770 | 4.791940e-49 | -8.615850e-47 |
| Msa0287720 | Msa0515130 | 0.822129 | 2.794660e-53 | -8.615850e-47 |
| Msa0287720 | Msa0515150 | 0.819455 | 1.150793e-52 | -8.615850e-47 |
| Msa0287720 | Msa0535570 | 0.853340 | 2.550072e-61 | -8.615850e-47 |
| Msa0287720 | Msa0538440 | 0.811239 | 7.733682e-51 | -8.615850e-47 |
| Msa0287720 | Msa0538450 | 0.836659 | 8.220287e-57 | -8.615850e-47 |
| Msa0287720 | Msa0538520 | 0.828264 | 9.900635e-55 | -8.615850e-47 |
| Msa0287720 | Msa0538530 | 0.804885 | 1.742317e-49 | -8.615850e-47 |
| Msa0287720 | Msa0543740 | 0.800298 | 1.538682e-48 | -8.615850e-47 |
| Msa0287720 | Msa0546760 | 0.824253 | 8.920813e-54 | -8.615850e-47 |
| Msa0287720 | Msa0579530 | 0.808378 | 3.190196e-50 | -8.615850e-47 |
| Msa0287720 | Msa0584360 | 0.802127 | 6.500897e-49 | -8.615850e-47 |
| Msa0287720 | Msa0589740 | 0.808136 | 3.592016e-50 | -8.615850e-47 |
| Msa0287720 | Msa0591490 | 0.825640 | 4.197294e-54 | -8.615850e-47 |
| Msa0287720 | Msa0594320 | 0.837235 | 5.857589e-57 | -8.615850e-47 |
| Msa0287720 | Msa0594330 | 0.821378 | 4.167473e-53 | -8.615850e-47 |
| Msa0287720 | Msa0631700 | 0.831443 | 1.664219e-55 | -8.615850e-47 |
| Msa0287720 | Msa0634290 | 0.823050 | 1.706260e-53 | -8.615850e-47 |
| Msa0287720 | Msa0639410 | 0.827444 | 1.559472e-54 | -8.615850e-47 |
| Msa0287720 | Msa0643840 | 0.819131 | 1.364496e-52 | -8.615850e-47 |
| Msa0287720 | Msa0646210 | 0.806338 | 8.633294e-50 | -8.615850e-47 |
| Msa0287720 | Msa0668220 | 0.833834 | 4.246372e-56 | -8.615850e-47 |
| Msa0287720 | Msa0670360 | 0.853010 | 3.170252e-61 | -8.615850e-47 |
| Msa0287720 | Msa0671490 | 0.822486 | 2.308846e-53 | -8.615850e-47 |
| Msa0287720 | Msa0671640 | 0.846351 | 2.293699e-59 | -8.615850e-47 |
| Msa0287720 | Msa0682410 | 0.804573 | 2.025011e-49 | -8.615850e-47 |
| Msa0287720 | Msa0711240 | 0.807959 | 3.916718e-50 | -8.615850e-47 |
| Msa0287720 | Msa0727480 | 0.800345 | 1.505764e-48 | -8.615850e-47 |
| Msa0287720 | Msa0735140 | 0.817187 | 3.755038e-52 | -8.615850e-47 |
| Msa0287720 | Msa0761420 | 0.822128 | 2.795671e-53 | -8.615850e-47 |
| Msa0287720 | Msa0768670 | 0.807914 | 4.005444e-50 | -8.615850e-47 |
| Msa0287720 | Msa0768720 | 0.812378 | 4.370165e-51 | -8.615850e-47 |
| Msa0287720 | Msa0777060 | 0.802676 | 5.009602e-49 | -8.615850e-47 |
| Msa0287720 | Msa0777070 | 0.819424 | 1.169837e-52 | -8.615850e-47 |
| Msa0287720 | Msa0789410 | 0.805662 | 1.198103e-49 | -8.615850e-47 |
| Msa0287720 | Msa0814160 | 0.857415 | 1.657835e-62 | -8.615850e-47 |
| Msa0287720 | Msa0822410 | 0.809430 | 1.899815e-50 | -8.615850e-47 |
| Msa0287720 | Msa0824860 | 0.814305 | 1.648343e-51 | -8.615850e-47 |
| Msa0287720 | Msa0854840 | 0.862182 | 6.074141e-64 | -8.615850e-47 |
| Msa0287720 | Msa0861730 | 0.843151 | 1.670830e-58 | -8.615850e-47 |
| Msa0287720 | Msa0863840 | 0.813135 | 2.983016e-51 | -8.615850e-47 |
| Msa0287720 | Msa0864160 | 0.800743 | 1.249030e-48 | -8.615850e-47 |
| Msa0287720 | Msa0868870 | 0.811448 | 6.966087e-51 | -8.615850e-47 |
| Msa0287720 | Msa0883640 | 0.808268 | 3.366672e-50 | -8.615850e-47 |
| Msa0287720 | Msa0893840 | 0.811832 | 5.746368e-51 | -8.615850e-47 |
| Msa0287720 | Msa0896920 | 0.813677 | 2.267482e-51 | -8.615850e-47 |
| Msa0287720 | Msa0902340 | 0.840566 | 8.048729e-58 | -8.615850e-47 |
| Msa0287720 | Msa0910830 | 0.826447 | 2.699515e-54 | -8.615850e-47 |
| Msa0287720 | Msa0932900 | 0.830177 | 3.400276e-55 | -8.615850e-47 |
| Msa0287720 | Msa0932930 | 0.840202 | 1.002030e-57 | -8.615850e-47 |
| Msa0287720 | Msa0933590 | 0.830277 | 3.215108e-55 | -8.615850e-47 |
| Msa0287720 | Msa0933610 | 0.803294 | 3.733940e-49 | -8.615850e-47 |
| Msa0287720 | Msa0941120 | 0.821057 | 4.943353e-53 | -8.615850e-47 |
| Msa0287720 | Msa0960090 | 0.809426 | 1.903298e-50 | -8.615850e-47 |
| Msa0287720 | Msa0976400 | 0.810239 | 1.272575e-50 | -8.615850e-47 |
| Msa0287720 | Msa0985700 | 0.808672 | 2.760501e-50 | -8.615850e-47 |
| Msa0287720 | Msa0996980 | 0.804365 | 2.236775e-49 | -8.615850e-47 |
| Msa0287720 | Msa1006170 | 0.861698 | 8.546859e-64 | -8.615850e-47 |
| Msa0287720 | Msa1022490 | 0.825865 | 3.712287e-54 | -8.615850e-47 |
| Msa0287720 | Msa1022510 | 0.837136 | 6.210535e-57 | -8.615850e-47 |
| Msa0287720 | Msa1024350 | 0.826434 | 2.718879e-54 | -8.615850e-47 |
| Msa0287720 | Msa1026050 | 0.830914 | 2.245743e-55 | -8.615850e-47 |
| Msa0287720 | Msa1026170 | 0.802828 | 4.662354e-49 | -8.615850e-47 |
| Msa0287720 | Msa1030320 | 0.827149 | 1.835234e-54 | -8.615850e-47 |
| Msa0287720 | Msa1048350 | 0.804164 | 2.463311e-49 | -8.615850e-47 |
| Msa0287720 | Msa1061670 | 0.824602 | 7.383927e-54 | -8.615850e-47 |
| Msa0287720 | Msa1064940 | 0.819733 | 9.945313e-53 | -8.615850e-47 |
| Msa0287720 | Msa1081610 | 0.811590 | 6.488416e-51 | -8.615850e-47 |
| Msa0287720 | Msa1087370 | 0.835539 | 1.581960e-56 | -8.615850e-47 |
| Msa0287720 | Msa1087380 | 0.863359 | 2.632877e-64 | -8.615850e-47 |
| Msa0287720 | Msa1098100 | 0.810687 | 1.018424e-50 | -8.615850e-47 |
| Msa0287720 | Msa1100030 | 0.830151 | 3.451273e-55 | -8.615850e-47 |
| Msa0287720 | Msa1104960 | 0.805942 | 1.046201e-49 | -8.615850e-47 |
| Msa0287720 | Msa1106680 | 0.837838 | 4.104910e-57 | -8.615850e-47 |
| Msa0287720 | Msa1106960 | 0.812490 | 4.129155e-51 | -8.615850e-47 |
| Msa0287720 | Msa1107510 | 0.806900 | 6.569568e-50 | -8.615850e-47 |
| Msa0287720 | Msa1109880 | 0.848779 | 4.929897e-60 | -8.615850e-47 |
| Msa0287720 | Msa1109890 | 0.837263 | 5.764437e-57 | -8.615850e-47 |
| Msa0287720 | Msa1110040 | 0.801216 | 9.996988e-49 | -8.615850e-47 |
| Msa0287720 | Msa1138110 | 0.818531 | 1.867490e-52 | -8.615850e-47 |
| Msa0287720 | Msa1148210 | 0.811224 | 7.793133e-51 | -8.615850e-47 |
| Msa0287720 | Msa1151070 | 0.804763 | 1.847896e-49 | -8.615850e-47 |
| Msa0287720 | Msa1170340 | 0.815352 | 9.660118e-52 | -8.615850e-47 |
| Msa0287720 | Msa1173290 | 0.808147 | 3.573313e-50 | -8.615850e-47 |
| Msa0287720 | Msa1177090 | 0.827816 | 1.269168e-54 | -8.615850e-47 |
| Msa0287720 | Msa1214960 | 0.820736 | 5.860366e-53 | -8.615850e-47 |
| Msa0287720 | Msa1321260 | 0.811761 | 5.956250e-51 | -8.615850e-47 |
| Msa0287720 | Msa1323030 | 0.849693 | 2.745543e-60 | -8.615850e-47 |
| Msa0287720 | Msa1323120 | 0.801376 | 9.269600e-49 | -8.615850e-47 |
| Msa0287720 | Msa1329740 | 0.800660 | 1.298820e-48 | -8.615850e-47 |
| Msa0287720 | Msa1341030 | 0.827021 | 1.968934e-54 | -8.615850e-47 |
| Msa0287720 | Msa1350870 | 0.811286 | 7.555028e-51 | -8.615850e-47 |
| Msa0287720 | Msa1355340 | 0.822386 | 2.435496e-53 | -8.615850e-47 |
| Msa0287720 | Msa1373560 | 0.836179 | 1.089111e-56 | -8.615850e-47 |
| Msa0287720 | Msa1411550 | 0.841585 | 4.346942e-58 | -8.615850e-47 |
| Msa0287720 | Msa1419390 | 0.803421 | 3.514910e-49 | -8.615850e-47 |
| Msa0287720 | Msa1445900 | 0.801003 | 1.105451e-48 | -8.615850e-47 |
| Msa0287720 | Msa1446090 | 0.802393 | 5.731264e-49 | -8.615850e-47 |
| Msa0287720 | Msa1459610 | 0.837530 | 4.921826e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287720 | MtrunA17_Chr2g0331531 | 95.906 | 171 | 6 | 1 | 1 | 170 | 1 | 171 | 2.19e-123 | 344 |
| Msa0287720 | MtrunA17_Chr4g0045011 | 40.458 | 131 | 78 | 0 | 32 | 162 | 64 | 194 | 1.33e-29 | 107 |
| Msa0287720 | MtrunA17_Chr8g0391441 | 34.911 | 169 | 107 | 1 | 2 | 170 | 4 | 169 | 4.23e-28 | 102 |
| Msa0287720 | MtrunA17_Chr4g0045001 | 42.149 | 121 | 66 | 1 | 25 | 141 | 40 | 160 | 1.19e-26 | 99.0 |
| Msa0287720 | MtrunA17_Chr8g0391431 | 38.938 | 113 | 69 | 0 | 32 | 144 | 52 | 164 | 3.61e-26 | 98.6 |
| Msa0287720 | MtrunA17_Chr1g0187341 | 46.903 | 113 | 59 | 1 | 32 | 144 | 12 | 123 | 9.22e-26 | 95.9 |
| Msa0287720 | MtrunA17_Chr5g0402421 | 37.931 | 116 | 69 | 1 | 32 | 144 | 52 | 167 | 1.06e-24 | 94.7 |
| Msa0287720 | MtrunA17_Chr6g0484871 | 37.795 | 127 | 74 | 2 | 20 | 142 | 2 | 127 | 1.14e-22 | 88.2 |
| Msa0287720 | MtrunA17_Chr8g0391401 | 37.600 | 125 | 68 | 3 | 25 | 143 | 2 | 122 | 5.75e-21 | 84.0 |
| Msa0287720 | MtrunA17_Chr5g0405841 | 30.714 | 140 | 74 | 3 | 32 | 168 | 295 | 414 | 6.17e-12 | 62.8 |
| Msa0287720 | MtrunA17_Chr2g0280931 | 28.571 | 140 | 68 | 6 | 32 | 144 | 76 | 210 | 1.09e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287720 | AT1G52200.1 | 64.000 | 150 | 53 | 1 | 21 | 170 | 42 | 190 | 4.00e-72 | 216 |
| Msa0287720 | AT1G52200.2 | 65.891 | 129 | 44 | 0 | 21 | 149 | 42 | 170 | 3.15e-65 | 198 |
| Msa0287720 | AT1G49030.1 | 44.898 | 147 | 79 | 1 | 22 | 168 | 78 | 222 | 6.19e-37 | 127 |
| Msa0287720 | AT3G18470.1 | 47.788 | 113 | 59 | 0 | 32 | 144 | 5 | 117 | 1.39e-36 | 123 |
| Msa0287720 | AT3G18460.1 | 40.580 | 138 | 75 | 2 | 32 | 169 | 54 | 184 | 9.63e-35 | 120 |
| Msa0287720 | AT3G18450.1 | 40.559 | 143 | 79 | 3 | 26 | 168 | 46 | 182 | 5.67e-32 | 113 |
| Msa0287720 | AT1G58320.1 | 51.327 | 113 | 53 | 2 | 32 | 143 | 17 | 128 | 4.19e-31 | 110 |
| Msa0287720 | AT1G68630.1 | 41.441 | 111 | 64 | 1 | 32 | 142 | 29 | 138 | 1.21e-27 | 101 |
| Msa0287720 | AT5G35525.1 | 35.252 | 139 | 88 | 1 | 32 | 170 | 16 | 152 | 6.85e-27 | 99.8 |
| Msa0287720 | AT1G14870.1 | 35.971 | 139 | 87 | 1 | 32 | 170 | 16 | 152 | 1.24e-26 | 99.0 |
| Msa0287720 | AT1G14880.1 | 33.813 | 139 | 90 | 1 | 32 | 170 | 15 | 151 | 7.75e-24 | 91.7 |
| Msa0287720 | AT1G14870.2 | 40.000 | 110 | 66 | 0 | 32 | 141 | 16 | 125 | 1.53e-23 | 90.5 |
| Msa0287720 | AT1G68610.1 | 37.324 | 142 | 84 | 3 | 32 | 170 | 19 | 158 | 9.58e-21 | 84.0 |
| Msa0287720 | AT2G40935.8 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0287720 | AT2G40935.9 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0287720 | AT2G40935.1 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0287720 | AT2G40935.6 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0287720 | AT2G40935.5 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.04e-15 | 71.6 |
| Msa0287720 | AT2G40935.3 | 34.694 | 98 | 47 | 2 | 51 | 132 | 55 | 151 | 4.28e-12 | 61.6 |
| Msa0287720 | AT2G40935.2 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.88e-12 | 60.5 |
| Msa0287720 | AT2G40935.7 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.88e-12 | 60.5 |
| Msa0287720 | AT2G40935.4 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 9.88e-12 | 60.5 |
| Msa0287720 | AT4G35920.1 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0287720 | AT4G35920.5 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0287720 | AT4G35920.4 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0287720 | AT4G35920.2 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
| Msa0287720 | AT4G35920.3 | 30.714 | 140 | 74 | 4 | 32 | 168 | 300 | 419 | 8.13e-11 | 60.1 |
Find 39 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAGTATTACCATTTGTT+TGG | 0.367919 | 2_3:+30890716 | None:intergenic |
| GTTAAGGAAGAAGTATGATT+TGG | 0.371388 | 2_3:-30889971 | Msa0287720:CDS |
| TTCAGAGAGCTCAAAATTAG+AGG | 0.383494 | 2_3:-30889883 | Msa0287720:CDS |
| TTTGTGCACACAATGGATTA+TGG | 0.383643 | 2_3:-30890013 | Msa0287720:CDS |
| TTGTGCACACAATGGATTAT+GGG | 0.412784 | 2_3:-30890012 | Msa0287720:CDS |
| ATAATGTAAGGTTGCCATCT+TGG | 0.416334 | 2_3:-30890066 | Msa0287720:intron |
| GAGGGAGGTTTGTTCAATGT+TGG | 0.461561 | 2_3:+30889700 | None:intergenic |
| AGAGGACTTGACCCTGCTCT+TGG | 0.473756 | 2_3:-30889865 | Msa0287720:intron |
| CAAAGTATAGAACAAAGTTA+AGG | 0.474519 | 2_3:-30889987 | Msa0287720:CDS |
| TGGACAGATAGCAGAAGTAT+TGG | 0.475164 | 2_3:-30890176 | Msa0287720:CDS |
| GTGAATTAAATACCAAGAGC+AGG | 0.481342 | 2_3:+30889853 | None:intergenic |
| GTAGGGAGTCCATGGAGTAC+TGG | 0.489984 | 2_3:-30890760 | Msa0287720:CDS |
| CTAATACAATTCAGCAAGTA+GGG | 0.490574 | 2_3:-30890777 | Msa0287720:CDS |
| GCTAATACAATTCAGCAAGT+AGG | 0.494698 | 2_3:-30890778 | Msa0287720:CDS |
| TTAGACATGAATTGAGTTGA+GGG | 0.500404 | 2_3:+30889682 | None:intergenic |
| AAGGAAGAAGTATGATTTGG+TGG | 0.502714 | 2_3:-30889968 | Msa0287720:CDS |
| ATCCATTGTGTGCACAAAGC+AGG | 0.505668 | 2_3:+30890018 | None:intergenic |
| CTCTCTGAACTCTTGACATA+GGG | 0.516209 | 2_3:+30889897 | None:intergenic |
| ACAAAGCAGGCATCATTAGC+AGG | 0.519823 | 2_3:+30890031 | None:intergenic |
| TTCAGCAAGTAGGGAGTCCA+TGG | 0.521718 | 2_3:-30890768 | Msa0287720:CDS |
| TCATACCTTGAGCCAACAGC+AGG | 0.522584 | 2_3:+30890802 | None:intergenic |
| TGTCATGAGAACCAAACAAA+TGG | 0.529201 | 2_3:-30890727 | Msa0287720:intron |
| GCTCTCTGAACTCTTGACAT+AGG | 0.530518 | 2_3:+30889896 | None:intergenic |
| CTTAGACATGAATTGAGTTG+AGG | 0.545566 | 2_3:+30889681 | None:intergenic |
| CAGCAGCAGGAACCTGCTGT+TGG | 0.559449 | 2_3:-30890814 | Msa0287720:CDS |
| GGAGCAGAAGACTCAGCAGC+AGG | 0.577516 | 2_3:-30890827 | Msa0287720:CDS |
| GGTAAATGAAGCTTCCAAGA+TGG | 0.581380 | 2_3:+30890052 | None:intergenic |
| AGGAACCTGCTGTTGGCTCA+AGG | 0.588955 | 2_3:-30890807 | Msa0287720:CDS |
| TCAAATAGTCCAGTACTCCA+TGG | 0.612473 | 2_3:+30890751 | None:intergenic |
| CAGATAGCAGAAGTATTGGA+TGG | 0.622869 | 2_3:-30890172 | Msa0287720:CDS |
| CTGAGTCTTCTGCTCCTCAG+TGG | 0.624099 | 2_3:+30890834 | None:intergenic |
| GACATGAATTGAGTTGAGGG+AGG | 0.624985 | 2_3:+30889685 | None:intergenic |
| TGAATTAAATACCAAGAGCA+GGG | 0.629149 | 2_3:+30889854 | None:intergenic |
| ATCTGTCCAAATGTTACACA+AGG | 0.643300 | 2_3:+30890190 | None:intergenic |
| TGCCTGCTTTGTGCACACAA+TGG | 0.656127 | 2_3:-30890020 | Msa0287720:CDS |
| TGAGAAATCACATCTGAATG+TGG | 0.657682 | 2_3:+30889940 | None:intergenic |
| ATAGCAGAAGTATTGGATGG+TGG | 0.672429 | 2_3:-30890169 | Msa0287720:CDS |
| AAGGGAGATGCAGACCACTG+AGG | 0.731299 | 2_3:-30890848 | None:intergenic |
| TCTTGACATAGGGAACAACA+AGG | 0.757057 | 2_3:+30889907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTAATCAAATACA+TGG | + | chr2_3:30890404-30890423 | None:intergenic | 10.0% |
| !!! | ATTTTATTTAATCAAATACA+TGG | + | chr2_3:30890404-30890423 | None:intergenic | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr2_3:30890079-30890098 | Msa0287720:intron | 15.0% |
| !!! | ATATATACCTTCTTTTTTTA+TGG | - | chr2_3:30890279-30890298 | Msa0287720:intron | 15.0% |
| !! | TTGTTAATTGTAATAATGTA+AGG | - | chr2_3:30890441-30890460 | Msa0287720:intron | 15.0% |
| !! | TTTATTCATCAAATATAAAG+TGG | + | chr2_3:30890694-30890713 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr2_3:30890079-30890098 | Msa0287720:intron | 15.0% |
| !!! | ATATATACCTTCTTTTTTTA+TGG | - | chr2_3:30890279-30890298 | Msa0287720:intron | 15.0% |
| !! | TTGTTAATTGTAATAATGTA+AGG | - | chr2_3:30890441-30890460 | Msa0287720:intron | 15.0% |
| !! | TTTATTCATCAAATATAAAG+TGG | + | chr2_3:30890694-30890713 | None:intergenic | 15.0% |
| !! | TATTAGTATTACCATTTGTT+TGG | + | chr2_3:30889806-30889825 | None:intergenic | 20.0% |
| !! | AAATAAACAAACTAGTTCAA+TGG | + | chr2_3:30889846-30889865 | None:intergenic | 20.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | - | chr2_3:30889914-30889933 | Msa0287720:CDS | 20.0% |
| !! | CAATGAAATAATAATGTGTT+TGG | + | chr2_3:30890221-30890240 | None:intergenic | 20.0% |
| !! | TATTAGTATTACCATTTGTT+TGG | + | chr2_3:30889806-30889825 | None:intergenic | 20.0% |
| !! | AAATAAACAAACTAGTTCAA+TGG | + | chr2_3:30889846-30889865 | None:intergenic | 20.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | - | chr2_3:30889914-30889933 | Msa0287720:CDS | 20.0% |
| !! | CAATGAAATAATAATGTGTT+TGG | + | chr2_3:30890221-30890240 | None:intergenic | 20.0% |
| ! | ATTACTTAAGAACTTCAACA+AGG | + | chr2_3:30889950-30889969 | None:intergenic | 25.0% |
| ! | ACAATTCATAGTTCATAGTA+GGG | + | chr2_3:30890159-30890178 | None:intergenic | 25.0% |
| ! | AACAATTCATAGTTCATAGT+AGG | + | chr2_3:30890160-30890179 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTGTAATATGC+AGG | - | chr2_3:30890238-30890257 | Msa0287720:intron | 25.0% |
| ! | CAAAGTATAGAACAAAGTTA+AGG | - | chr2_3:30890532-30890551 | Msa0287720:intron | 25.0% |
| ! | ATTCATCAAATATAAAGTGG+AGG | + | chr2_3:30890691-30890710 | None:intergenic | 25.0% |
| !!! | ATAACAAATTTTTTGAGTGC+AGG | - | chr2_3:30890750-30890769 | Msa0287720:CDS | 25.0% |
| !!! | TAACAAATTTTTTGAGTGCA+GGG | - | chr2_3:30890751-30890770 | Msa0287720:CDS | 25.0% |
| ! | ATTACTTAAGAACTTCAACA+AGG | + | chr2_3:30889950-30889969 | None:intergenic | 25.0% |
| ! | ACAATTCATAGTTCATAGTA+GGG | + | chr2_3:30890159-30890178 | None:intergenic | 25.0% |
| ! | AACAATTCATAGTTCATAGT+AGG | + | chr2_3:30890160-30890179 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTGTAATATGC+AGG | - | chr2_3:30890238-30890257 | Msa0287720:intron | 25.0% |
| ! | CAAAGTATAGAACAAAGTTA+AGG | - | chr2_3:30890532-30890551 | Msa0287720:intron | 25.0% |
| ! | ATTCATCAAATATAAAGTGG+AGG | + | chr2_3:30890691-30890710 | None:intergenic | 25.0% |
| !!! | ATAACAAATTTTTTGAGTGC+AGG | - | chr2_3:30890750-30890769 | Msa0287720:CDS | 25.0% |
| !!! | TAACAAATTTTTTGAGTGCA+GGG | - | chr2_3:30890751-30890770 | Msa0287720:CDS | 25.0% |
| CTAATACAATTCAGCAAGTA+GGG | - | chr2_3:30889742-30889761 | Msa0287720:CDS | 30.0% | |
| TTAAGTAATTCTTGAGCACA+TGG | - | chr2_3:30889961-30889980 | Msa0287720:CDS | 30.0% | |
| ! | ACACTTTCAATTTGAAGTGT+CGG | + | chr2_3:30890009-30890028 | None:intergenic | 30.0% |
| CTGCAAACCATAAAAAAAGA+AGG | + | chr2_3:30890289-30890308 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTGTGTAACATT+TGG | - | chr2_3:30890323-30890342 | Msa0287720:intron | 30.0% |
| ! | GTTAAGGAAGAAGTATGATT+TGG | - | chr2_3:30890548-30890567 | Msa0287720:intron | 30.0% |
| TGAATTAAATACCAAGAGCA+GGG | + | chr2_3:30890668-30890687 | None:intergenic | 30.0% | |
| !! | TTAGACATGAATTGAGTTGA+GGG | + | chr2_3:30890840-30890859 | None:intergenic | 30.0% |
| CTAATACAATTCAGCAAGTA+GGG | - | chr2_3:30889742-30889761 | Msa0287720:CDS | 30.0% | |
| TTAAGTAATTCTTGAGCACA+TGG | - | chr2_3:30889961-30889980 | Msa0287720:CDS | 30.0% | |
| ! | ACACTTTCAATTTGAAGTGT+CGG | + | chr2_3:30890009-30890028 | None:intergenic | 30.0% |
| CTGCAAACCATAAAAAAAGA+AGG | + | chr2_3:30890289-30890308 | None:intergenic | 30.0% | |
| ! | TTTTTGCCTTGTGTAACATT+TGG | - | chr2_3:30890323-30890342 | Msa0287720:intron | 30.0% |
| ! | GTTAAGGAAGAAGTATGATT+TGG | - | chr2_3:30890548-30890567 | Msa0287720:intron | 30.0% |
| TGAATTAAATACCAAGAGCA+GGG | + | chr2_3:30890668-30890687 | None:intergenic | 30.0% | |
| !! | TTAGACATGAATTGAGTTGA+GGG | + | chr2_3:30890840-30890859 | None:intergenic | 30.0% |
| GCTAATACAATTCAGCAAGT+AGG | - | chr2_3:30889741-30889760 | Msa0287720:CDS | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | - | chr2_3:30889792-30889811 | Msa0287720:intron | 35.0% | |
| ! | GGTGCTACATATATTTGTGA+CGG | + | chr2_3:30889988-30890007 | None:intergenic | 35.0% |
| ATCTGTCCAAATGTTACACA+AGG | + | chr2_3:30890332-30890351 | None:intergenic | 35.0% | |
| ATCAAATACATGGTGAGTTG+AGG | + | chr2_3:30890394-30890413 | None:intergenic | 35.0% | |
| ATAATGTAAGGTTGCCATCT+TGG | - | chr2_3:30890453-30890472 | Msa0287720:intron | 35.0% | |
| !! | TTTGTGCACACAATGGATTA+TGG | - | chr2_3:30890506-30890525 | Msa0287720:intron | 35.0% |
| !! | TTGTGCACACAATGGATTAT+GGG | - | chr2_3:30890507-30890526 | Msa0287720:intron | 35.0% |
| ! | AAGGAAGAAGTATGATTTGG+TGG | - | chr2_3:30890551-30890570 | Msa0287720:intron | 35.0% |
| TGAGAAATCACATCTGAATG+TGG | + | chr2_3:30890582-30890601 | None:intergenic | 35.0% | |
| TTCAGAGAGCTCAAAATTAG+AGG | - | chr2_3:30890636-30890655 | Msa0287720:intron | 35.0% | |
| GTGAATTAAATACCAAGAGC+AGG | + | chr2_3:30890669-30890688 | None:intergenic | 35.0% | |
| ! | CTTAGACATGAATTGAGTTG+AGG | + | chr2_3:30890841-30890860 | None:intergenic | 35.0% |
| GCTAATACAATTCAGCAAGT+AGG | - | chr2_3:30889741-30889760 | Msa0287720:CDS | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | - | chr2_3:30889792-30889811 | Msa0287720:intron | 35.0% | |
| ! | GGTGCTACATATATTTGTGA+CGG | + | chr2_3:30889988-30890007 | None:intergenic | 35.0% |
| ATCTGTCCAAATGTTACACA+AGG | + | chr2_3:30890332-30890351 | None:intergenic | 35.0% | |
| ATCAAATACATGGTGAGTTG+AGG | + | chr2_3:30890394-30890413 | None:intergenic | 35.0% | |
| ATAATGTAAGGTTGCCATCT+TGG | - | chr2_3:30890453-30890472 | Msa0287720:intron | 35.0% | |
| !! | TTTGTGCACACAATGGATTA+TGG | - | chr2_3:30890506-30890525 | Msa0287720:intron | 35.0% |
| !! | TTGTGCACACAATGGATTAT+GGG | - | chr2_3:30890507-30890526 | Msa0287720:intron | 35.0% |
| ! | AAGGAAGAAGTATGATTTGG+TGG | - | chr2_3:30890551-30890570 | Msa0287720:intron | 35.0% |
| TGAGAAATCACATCTGAATG+TGG | + | chr2_3:30890582-30890601 | None:intergenic | 35.0% | |
| TTCAGAGAGCTCAAAATTAG+AGG | - | chr2_3:30890636-30890655 | Msa0287720:intron | 35.0% | |
| GTGAATTAAATACCAAGAGC+AGG | + | chr2_3:30890669-30890688 | None:intergenic | 35.0% | |
| ! | CTTAGACATGAATTGAGTTG+AGG | + | chr2_3:30890841-30890860 | None:intergenic | 35.0% |
| TCAAATAGTCCAGTACTCCA+TGG | + | chr2_3:30889771-30889790 | None:intergenic | 40.0% | |
| ! | TGGACAGATAGCAGAAGTAT+TGG | - | chr2_3:30890343-30890362 | Msa0287720:intron | 40.0% |
| !! | CAGATAGCAGAAGTATTGGA+TGG | - | chr2_3:30890347-30890366 | Msa0287720:intron | 40.0% |
| !! | ATAGCAGAAGTATTGGATGG+TGG | - | chr2_3:30890350-30890369 | Msa0287720:intron | 40.0% |
| ! | AAATACATGGTGAGTTGAGG+AGG | + | chr2_3:30890391-30890410 | None:intergenic | 40.0% |
| GGTAAATGAAGCTTCCAAGA+TGG | + | chr2_3:30890470-30890489 | None:intergenic | 40.0% | |
| TCTTGACATAGGGAACAACA+AGG | + | chr2_3:30890615-30890634 | None:intergenic | 40.0% | |
| CTCTCTGAACTCTTGACATA+GGG | + | chr2_3:30890625-30890644 | None:intergenic | 40.0% | |
| !!! | CAAATTTTTTGAGTGCAGGG+TGG | - | chr2_3:30890754-30890773 | Msa0287720:CDS | 40.0% |
| TCAAATAGTCCAGTACTCCA+TGG | + | chr2_3:30889771-30889790 | None:intergenic | 40.0% | |
| ! | TGGACAGATAGCAGAAGTAT+TGG | - | chr2_3:30890343-30890362 | Msa0287720:intron | 40.0% |
| !! | CAGATAGCAGAAGTATTGGA+TGG | - | chr2_3:30890347-30890366 | Msa0287720:intron | 40.0% |
| !! | ATAGCAGAAGTATTGGATGG+TGG | - | chr2_3:30890350-30890369 | Msa0287720:intron | 40.0% |
| ! | AAATACATGGTGAGTTGAGG+AGG | + | chr2_3:30890391-30890410 | None:intergenic | 40.0% |
| GGTAAATGAAGCTTCCAAGA+TGG | + | chr2_3:30890470-30890489 | None:intergenic | 40.0% | |
| TCTTGACATAGGGAACAACA+AGG | + | chr2_3:30890615-30890634 | None:intergenic | 40.0% | |
| CTCTCTGAACTCTTGACATA+GGG | + | chr2_3:30890625-30890644 | None:intergenic | 40.0% | |
| !!! | CAAATTTTTTGAGTGCAGGG+TGG | - | chr2_3:30890754-30890773 | Msa0287720:CDS | 40.0% |
| TGATGTCAGACACAGATGAC+TGG | + | chr2_3:30890034-30890053 | None:intergenic | 45.0% | |
| ACAAAGCAGGCATCATTAGC+AGG | + | chr2_3:30890491-30890510 | None:intergenic | 45.0% | |
| ATCCATTGTGTGCACAAAGC+AGG | + | chr2_3:30890504-30890523 | None:intergenic | 45.0% | |
| GCTCTCTGAACTCTTGACAT+AGG | + | chr2_3:30890626-30890645 | None:intergenic | 45.0% | |
| !!! | TTTTTGAGTGCAGGGTGGAA+TGG | - | chr2_3:30890759-30890778 | Msa0287720:CDS | 45.0% |
| ! | GAGGGAGGTTTGTTCAATGT+TGG | + | chr2_3:30890822-30890841 | None:intergenic | 45.0% |
| !! | GACATGAATTGAGTTGAGGG+AGG | + | chr2_3:30890837-30890856 | None:intergenic | 45.0% |
| TGATGTCAGACACAGATGAC+TGG | + | chr2_3:30890034-30890053 | None:intergenic | 45.0% | |
| ACAAAGCAGGCATCATTAGC+AGG | + | chr2_3:30890491-30890510 | None:intergenic | 45.0% | |
| ATCCATTGTGTGCACAAAGC+AGG | + | chr2_3:30890504-30890523 | None:intergenic | 45.0% | |
| GCTCTCTGAACTCTTGACAT+AGG | + | chr2_3:30890626-30890645 | None:intergenic | 45.0% | |
| !!! | TTTTTGAGTGCAGGGTGGAA+TGG | - | chr2_3:30890759-30890778 | Msa0287720:CDS | 45.0% |
| ! | GAGGGAGGTTTGTTCAATGT+TGG | + | chr2_3:30890822-30890841 | None:intergenic | 45.0% |
| !! | GACATGAATTGAGTTGAGGG+AGG | + | chr2_3:30890837-30890856 | None:intergenic | 45.0% |
| TCATACCTTGAGCCAACAGC+AGG | + | chr2_3:30889720-30889739 | None:intergenic | 50.0% | |
| TTCAGCAAGTAGGGAGTCCA+TGG | - | chr2_3:30889751-30889770 | Msa0287720:intron | 50.0% | |
| TGCCTGCTTTGTGCACACAA+TGG | - | chr2_3:30890499-30890518 | Msa0287720:intron | 50.0% | |
| TCATACCTTGAGCCAACAGC+AGG | + | chr2_3:30889720-30889739 | None:intergenic | 50.0% | |
| TTCAGCAAGTAGGGAGTCCA+TGG | - | chr2_3:30889751-30889770 | Msa0287720:intron | 50.0% | |
| TGCCTGCTTTGTGCACACAA+TGG | - | chr2_3:30890499-30890518 | Msa0287720:intron | 50.0% | |
| CTGAGTCTTCTGCTCCTCAG+TGG | + | chr2_3:30889688-30889707 | None:intergenic | 55.0% | |
| !! | AGGAACCTGCTGTTGGCTCA+AGG | - | chr2_3:30889712-30889731 | Msa0287720:CDS | 55.0% |
| GTAGGGAGTCCATGGAGTAC+TGG | - | chr2_3:30889759-30889778 | Msa0287720:intron | 55.0% | |
| AGAGGACTTGACCCTGCTCT+TGG | - | chr2_3:30890654-30890673 | Msa0287720:intron | 55.0% | |
| CTGAGTCTTCTGCTCCTCAG+TGG | + | chr2_3:30889688-30889707 | None:intergenic | 55.0% | |
| !! | AGGAACCTGCTGTTGGCTCA+AGG | - | chr2_3:30889712-30889731 | Msa0287720:CDS | 55.0% |
| GTAGGGAGTCCATGGAGTAC+TGG | - | chr2_3:30889759-30889778 | Msa0287720:intron | 55.0% | |
| AGAGGACTTGACCCTGCTCT+TGG | - | chr2_3:30890654-30890673 | Msa0287720:intron | 55.0% | |
| GGAGCAGAAGACTCAGCAGC+AGG | - | chr2_3:30889692-30889711 | Msa0287720:CDS | 60.0% | |
| CAGCAGCAGGAACCTGCTGT+TGG | - | chr2_3:30889705-30889724 | Msa0287720:CDS | 60.0% | |
| GGAGCAGAAGACTCAGCAGC+AGG | - | chr2_3:30889692-30889711 | Msa0287720:CDS | 60.0% | |
| CAGCAGCAGGAACCTGCTGT+TGG | - | chr2_3:30889705-30889724 | Msa0287720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 30889678 | 30890863 | 30889678 | ID=Msa0287720;Name=Msa0287720 |
| chr2_3 | mRNA | 30889678 | 30890863 | 30889678 | ID=Msa0287720-mRNA-1;Parent=Msa0287720;Name=Msa0287720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|170 |
| chr2_3 | exon | 30890728 | 30890863 | 30890728 | ID=Msa0287720-mRNA-1:exon:10587;Parent=Msa0287720-mRNA-1 |
| chr2_3 | exon | 30890161 | 30890232 | 30890161 | ID=Msa0287720-mRNA-1:exon:10586;Parent=Msa0287720-mRNA-1 |
| chr2_3 | exon | 30889866 | 30890078 | 30889866 | ID=Msa0287720-mRNA-1:exon:10585;Parent=Msa0287720-mRNA-1 |
| chr2_3 | exon | 30889678 | 30889769 | 30889678 | ID=Msa0287720-mRNA-1:exon:10584;Parent=Msa0287720-mRNA-1 |
| chr2_3 | CDS | 30890728 | 30890863 | 30890728 | ID=Msa0287720-mRNA-1:cds;Parent=Msa0287720-mRNA-1 |
| chr2_3 | CDS | 30890161 | 30890232 | 30890161 | ID=Msa0287720-mRNA-1:cds;Parent=Msa0287720-mRNA-1 |
| chr2_3 | CDS | 30889866 | 30890078 | 30889866 | ID=Msa0287720-mRNA-1:cds;Parent=Msa0287720-mRNA-1 |
| chr2_3 | CDS | 30889678 | 30889769 | 30889678 | ID=Msa0287720-mRNA-1:cds;Parent=Msa0287720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
