Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271280 | NP_001345025.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271280 | sp|P30173|ACT13_SOLTU | 94.430 | 377 | 21 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271280 | A0A4D6KPJ4 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 780 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120380 | Msa0271280 | 0.809250 | 2.076068e-50 | -8.615850e-47 |
| Msa0197940 | Msa0271280 | 0.821422 | 4.070974e-53 | -8.615850e-47 |
| Msa0271280 | Msa1051680 | -0.814872 | 1.234694e-51 | -8.615850e-47 |
| Msa0271280 | Msa1388790 | 0.812482 | 4.146738e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271280 | MtrunA17_Chr2g0278591 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 780 |
| Msa0271280 | MtrunA17_Chr3g0129641 | 94.695 | 377 | 20 | 0 | 1 | 377 | 1 | 377 | 0.0 | 754 |
| Msa0271280 | MtrunA17_Chr6g0448881 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 754 |
| Msa0271280 | MtrunA17_Chr2g0328091 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Msa0271280 | MtrunA17_Chr7g0223901 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 751 |
| Msa0271280 | MtrunA17_Chr1g0175391 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 750 |
| Msa0271280 | MtrunA17_Chr7g0258721 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0271280 | MtrunA17_Chr7g0224401 | 43.536 | 379 | 200 | 3 | 10 | 374 | 7 | 385 | 1.38e-121 | 357 |
| Msa0271280 | MtrunA17_Chr5g0427591 | 36.323 | 446 | 211 | 11 | 1 | 376 | 1 | 443 | 9.52e-91 | 280 |
| Msa0271280 | MtrunA17_Chr8g0361001 | 36.323 | 446 | 211 | 11 | 1 | 376 | 1 | 443 | 1.76e-90 | 279 |
| Msa0271280 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 1.18e-74 | 238 |
| Msa0271280 | MtrunA17_Chr3g0089031 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 1.01e-70 | 225 |
| Msa0271280 | MtrunA17_Chr2g0305361 | 28.111 | 434 | 246 | 7 | 8 | 377 | 6 | 437 | 5.61e-59 | 197 |
| Msa0271280 | MtrunA17_Chr3g0080021 | 31.338 | 284 | 171 | 9 | 91 | 358 | 179 | 454 | 5.06e-40 | 147 |
| Msa0271280 | MtrunA17_Chr8g0369101 | 32.082 | 293 | 172 | 10 | 91 | 366 | 187 | 469 | 1.92e-37 | 140 |
| Msa0271280 | MtrunA17_Chr3g0111971 | 28.968 | 252 | 160 | 7 | 9 | 245 | 21 | 268 | 5.39e-23 | 100 |
| Msa0271280 | MtrunA17_Chr3g0111971 | 34.426 | 122 | 77 | 2 | 250 | 368 | 586 | 707 | 6.37e-16 | 79.3 |
| Msa0271280 | MtrunA17_Chr8g0336061 | 40.217 | 92 | 42 | 1 | 241 | 319 | 12 | 103 | 1.84e-18 | 80.1 |
| Msa0271280 | MtrunA17_Chr8g0336071 | 37.895 | 95 | 59 | 0 | 105 | 199 | 1 | 95 | 1.39e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271280 | AT3G12110.1 | 94.164 | 377 | 22 | 0 | 1 | 377 | 1 | 377 | 0.0 | 751 |
| Msa0271280 | AT5G09810.1 | 94.430 | 377 | 21 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0271280 | AT3G53750.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0271280 | AT3G53750.2 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0271280 | AT2G37620.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0271280 | AT2G37620.3 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0271280 | AT2G37620.2 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0271280 | AT2G37620.4 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0271280 | AT5G59370.2 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 738 |
| Msa0271280 | AT5G59370.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 738 |
| Msa0271280 | AT3G46520.2 | 91.777 | 377 | 31 | 0 | 1 | 377 | 1 | 377 | 0.0 | 736 |
| Msa0271280 | AT3G46520.1 | 91.777 | 377 | 31 | 0 | 1 | 377 | 1 | 377 | 0.0 | 736 |
| Msa0271280 | AT1G49240.1 | 89.920 | 377 | 38 | 0 | 1 | 377 | 1 | 377 | 0.0 | 731 |
| Msa0271280 | AT3G18780.2 | 89.655 | 377 | 39 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| Msa0271280 | AT3G18780.3 | 89.655 | 377 | 39 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| Msa0271280 | AT3G18780.1 | 88.920 | 361 | 40 | 0 | 1 | 361 | 1 | 361 | 0.0 | 689 |
| Msa0271280 | AT2G42100.1 | 83.696 | 368 | 60 | 0 | 10 | 377 | 11 | 378 | 0.0 | 673 |
| Msa0271280 | AT2G42090.1 | 70.270 | 370 | 105 | 1 | 7 | 376 | 1 | 365 | 0.0 | 568 |
| Msa0271280 | AT2G42170.1 | 77.711 | 332 | 71 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa0271280 | AT2G42170.3 | 77.711 | 332 | 71 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa0271280 | AT2G42170.4 | 77.564 | 312 | 67 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa0271280 | AT2G42170.2 | 77.564 | 312 | 67 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa0271280 | AT2G42170.5 | 77.434 | 226 | 48 | 1 | 152 | 377 | 9 | 231 | 2.33e-131 | 376 |
| Msa0271280 | AT3G27000.1 | 43.536 | 379 | 200 | 3 | 10 | 374 | 7 | 385 | 2.77e-122 | 358 |
| Msa0271280 | AT1G18450.1 | 36.795 | 443 | 210 | 8 | 1 | 376 | 1 | 440 | 3.30e-94 | 289 |
| Msa0271280 | AT1G13180.1 | 34.383 | 413 | 219 | 9 | 10 | 373 | 9 | 418 | 4.91e-75 | 239 |
| Msa0271280 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 6.86e-69 | 221 |
| Msa0271280 | AT3G33520.1 | 30.641 | 421 | 234 | 7 | 10 | 377 | 5 | 420 | 6.32e-61 | 202 |
| Msa0271280 | AT5G56180.3 | 31.271 | 291 | 174 | 9 | 91 | 364 | 50 | 331 | 9.44e-37 | 136 |
| Msa0271280 | AT5G56180.1 | 31.271 | 291 | 174 | 9 | 91 | 364 | 182 | 463 | 1.06e-35 | 136 |
| Msa0271280 | AT3G12380.2 | 29.183 | 257 | 159 | 6 | 9 | 245 | 21 | 274 | 2.52e-26 | 111 |
| Msa0271280 | AT3G12380.2 | 35.246 | 122 | 76 | 1 | 250 | 368 | 595 | 716 | 2.83e-16 | 80.9 |
| Msa0271280 | AT3G12380.1 | 29.020 | 255 | 156 | 6 | 9 | 245 | 21 | 268 | 1.27e-25 | 109 |
| Msa0271280 | AT3G12380.1 | 35.246 | 122 | 76 | 1 | 250 | 368 | 589 | 710 | 3.06e-16 | 80.9 |
| Msa0271280 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 5.36e-24 | 97.1 |
| Msa0271280 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 5.36e-24 | 97.1 |
| Msa0271280 | AT5G56180.2 | 32.178 | 202 | 114 | 7 | 91 | 281 | 182 | 371 | 5.68e-20 | 90.9 |
| Msa0271280 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 1.14e-12 | 66.2 |
Find 153 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTATATGTTTCTTCTTT+AGG | 0.181484 | 2_3:+2585181 | Msa0271280:three_prime_UTR |
| CTCTTCCAGCCTTCTCTAAT+TGG | 0.203357 | 2_3:+2584572 | Msa0271280:CDS |
| TTCATGCTGGTCATGAATTT+AGG | 0.257723 | 2_3:+2585293 | Msa0271280:three_prime_UTR |
| TGAAAGTCTCAAACATAATC+TGG | 0.264920 | 2_3:-2583662 | None:intergenic |
| ATTCTTCGTTTGGATCTTGC+TGG | 0.283771 | 2_3:+2584314 | Msa0271280:CDS |
| AGAAGCACAGGGTGTTCTTC+TGG | 0.289026 | 2_3:-2583594 | None:intergenic |
| TCCCCATGCAATTCTTCGTT+TGG | 0.297491 | 2_3:+2584304 | Msa0271280:CDS |
| CGAGGAGTGGGAAGTGTTAC+AGG | 0.312663 | 2_3:-2582609 | None:intergenic |
| ACGAGGTCGCCCAATAATAC+TGG | 0.318817 | 2_3:-2583397 | None:intergenic |
| GCCGTGTTCCCCAGTATTAT+TGG | 0.323031 | 2_3:+2583387 | Msa0271280:CDS |
| AGCATGGTATAGTTAGTAAC+TGG | 0.325644 | 2_3:+2583517 | Msa0271280:CDS |
| GTAGGTATCGTGCTTGATTC+TGG | 0.329103 | 2_3:+2584236 | Msa0271280:intron |
| GGAGGTTCTACTATGTTTCC+TGG | 0.336897 | 2_3:+2584692 | Msa0271280:CDS |
| AACCAAACTTGACTGAAATA+TGG | 0.338167 | 2_3:-2585086 | None:intergenic |
| AAGAGCATACCCTTCATATA+TGG | 0.341233 | 2_3:-2584282 | None:intergenic |
| ACCCATCTCAGAAGCACTTT+CGG | 0.343470 | 2_3:-2585024 | None:intergenic |
| CCTCATACAAATATAGATTA+AGG | 0.345616 | 2_3:-2585458 | None:intergenic |
| TTGAAACGCACCTTGTTAGA+AGG | 0.349336 | 2_3:-2582676 | None:intergenic |
| CCATTTCTTGTTCAAAATCA+AGG | 0.349898 | 2_3:-2584451 | None:intergenic |
| AAGGGTGAATATGATGAATC+TGG | 0.351116 | 2_3:+2584986 | Msa0271280:CDS |
| GAATTTAGGTGCCTCTAGTT+AGG | 0.351952 | 2_3:+2585307 | Msa0271280:three_prime_UTR |
| TGCCATATTTCAGTCAAGTT+TGG | 0.354500 | 2_3:+2585084 | Msa0271280:three_prime_UTR |
| GTGATGAAGCTCAGTCAAAA+AGG | 0.356008 | 2_3:+2583466 | Msa0271280:CDS |
| TATGAGGTGATGGGCCTATA+GGG | 0.370363 | 2_3:+2585474 | Msa0271280:three_prime_UTR |
| ATGACTCAAAATTCCCTGTC+TGG | 0.371267 | 2_3:-2585361 | None:intergenic |
| CTGGATTGGTGGGTCTATCT+TGG | 0.374688 | 2_3:+2584808 | Msa0271280:CDS |
| CCGTGTTCCCCAGTATTATT+GGG | 0.375764 | 2_3:+2583388 | Msa0271280:CDS |
| GAAGGCTGGAAGAGTACTTC+GGG | 0.376616 | 2_3:-2584563 | None:intergenic |
| ATGTTTCTTCTTTAGGTCCT+TGG | 0.378100 | 2_3:+2585188 | Msa0271280:three_prime_UTR |
| TGAACTTTGTAGGTTCTGTT+TGG | 0.381657 | 2_3:+2585248 | Msa0271280:three_prime_UTR |
| GTATGAGGTGATGGGCCTAT+AGG | 0.384937 | 2_3:+2585473 | Msa0271280:three_prime_UTR |
| CTAACTATACCATGCTCTAT+AGG | 0.385023 | 2_3:-2583510 | None:intergenic |
| AGTTAGTAACTGGGACGATA+TGG | 0.387331 | 2_3:+2583527 | Msa0271280:CDS |
| CTCATACGGTCAGCAATTCC+AGG | 0.397451 | 2_3:-2584710 | None:intergenic |
| TGAAGTGTGATGTTGATATT+AGG | 0.398134 | 2_3:+2584639 | Msa0271280:CDS |
| TTCTTCGTTTGGATCTTGCT+GGG | 0.403209 | 2_3:+2584315 | Msa0271280:CDS |
| CCTTAATCTATATTTGTATG+AGG | 0.421114 | 2_3:+2585458 | Msa0271280:three_prime_UTR |
| AGAATTTGATCACAACTCAT+TGG | 0.428205 | 2_3:-2585053 | None:intergenic |
| AATATATCTAGTTTAATGAA+TGG | 0.428979 | 2_3:+2585143 | Msa0271280:three_prime_UTR |
| GATATTAGGAAGGATCTATA+TGG | 0.429892 | 2_3:+2584653 | Msa0271280:CDS |
| GCAAATCAAACAAACCCTAT+AGG | 0.429939 | 2_3:-2585488 | None:intergenic |
| GGGACGATATGGAAAAGATT+TGG | 0.432591 | 2_3:+2583538 | Msa0271280:CDS |
| AGAACAAGGTTTATATATGA+AGG | 0.433280 | 2_3:-2582572 | None:intergenic |
| TCTATATTTGTATGAGGTGA+TGG | 0.435127 | 2_3:+2585464 | Msa0271280:three_prime_UTR |
| TATGGAAATATTGTGCTTAG+TGG | 0.440342 | 2_3:+2584671 | Msa0271280:CDS |
| GTCATACCGGTGTAATGGTT+GGG | 0.440783 | 2_3:+2583418 | Msa0271280:CDS |
| CTTGTCGTTGACAATGGAAC+TGG | 0.444949 | 2_3:+2583212 | Msa0271280:CDS |
| ATTGTTATGACCTGTCCATC+AGG | 0.450057 | 2_3:-2584518 | None:intergenic |
| TGGATTGCAACATACATTGC+AGG | 0.450250 | 2_3:-2583690 | None:intergenic |
| CTGAGAGGAAGTACAGTGTC+TGG | 0.452337 | 2_3:+2584789 | Msa0271280:CDS |
| GGAGCCTCGGTAAGAAGCAC+AGG | 0.455052 | 2_3:-2583606 | None:intergenic |
| CATATCTATTTCTCCCAGAC+AGG | 0.455196 | 2_3:+2585347 | Msa0271280:three_prime_UTR |
| TGCAATGTATGTTGCAATCC+AGG | 0.457549 | 2_3:+2583692 | Msa0271280:CDS |
| TTGCAGGCGATGATGCTCCT+AGG | 0.460240 | 2_3:+2583364 | Msa0271280:CDS |
| ATCACTCAGTACCTTTCAAC+AGG | 0.460639 | 2_3:+2584832 | Msa0271280:CDS |
| TGACTTATTATTTGATGCTG+TGG | 0.465608 | 2_3:+2585108 | Msa0271280:three_prime_UTR |
| GATGGACAGGTCATAACAAT+AGG | 0.466277 | 2_3:+2584521 | Msa0271280:CDS |
| CTACGAGTTGCCTGATGGAC+AGG | 0.466607 | 2_3:+2584508 | Msa0271280:CDS |
| GGGATGGTATTGAACTTTGT+AGG | 0.467493 | 2_3:+2585238 | Msa0271280:three_prime_UTR |
| CCAGCCTTCTCTAATTGGTA+TGG | 0.471456 | 2_3:+2584577 | Msa0271280:CDS |
| TACCGGTGTAATGGTTGGGA+TGG | 0.474226 | 2_3:+2583422 | Msa0271280:CDS |
| CACCGAAAGTGCTTCTGAGA+TGG | 0.477666 | 2_3:+2585022 | Msa0271280:exon |
| GACTTATTATTTGATGCTGT+GGG | 0.478235 | 2_3:+2585109 | Msa0271280:three_prime_UTR |
| CACTGATTTCCTTGCTCATA+CGG | 0.481431 | 2_3:-2584724 | None:intergenic |
| CACTTTCGGTGAACAATAGC+TGG | 0.483033 | 2_3:-2585010 | None:intergenic |
| CAAAGAGAAATTAGCATATG+TGG | 0.483483 | 2_3:+2584427 | Msa0271280:CDS |
| CTATTGGCTTTAGGATTGAG+TGG | 0.488468 | 2_3:-2583627 | None:intergenic |
| AAGTACAGTGTCTGGATTGG+TGG | 0.495328 | 2_3:+2584797 | Msa0271280:CDS |
| TGGAGAAGCGAGCGAGGAGT+GGG | 0.495732 | 2_3:-2582621 | None:intergenic |
| CATTTCTTGTTCAAAATCAA+GGG | 0.500283 | 2_3:-2584450 | None:intergenic |
| CGAGGTCGCCCAATAATACT+GGG | 0.500410 | 2_3:-2583396 | None:intergenic |
| ACCGAAAGTGCTTCTGAGAT+GGG | 0.502754 | 2_3:+2585023 | Msa0271280:exon |
| TGACTCAAAATTCCCTGTCT+GGG | 0.503869 | 2_3:-2585360 | None:intergenic |
| GCGTGATTTAACAGAGTACT+TGG | 0.505684 | 2_3:+2584337 | Msa0271280:CDS |
| AGAGCATACCCTTCATATAT+GGG | 0.507300 | 2_3:-2584281 | None:intergenic |
| CCCAATAATACTGGGGAACA+CGG | 0.510117 | 2_3:-2583388 | None:intergenic |
| CAAACCTGTGGTACGTCCAC+TGG | 0.513599 | 2_3:-2583733 | None:intergenic |
| CAGACACTGTACTTCCTCTC+AGG | 0.514199 | 2_3:-2584788 | None:intergenic |
| ACCTCGTCATACCGGTGTAA+TGG | 0.515976 | 2_3:+2583413 | Msa0271280:CDS |
| CACACAGTGCCCATATATGA+AGG | 0.517963 | 2_3:+2584272 | Msa0271280:CDS |
| CGTCATACCGGTGTAATGGT+TGG | 0.521275 | 2_3:+2583417 | Msa0271280:CDS |
| CTTCAGTACCTCAGCTGAGA+AGG | 0.523675 | 2_3:+2584388 | Msa0271280:CDS |
| AGATTCATCATATTCACCCT+TGG | 0.524089 | 2_3:-2584984 | None:intergenic |
| CTAATTGGTATGGAAGCTAC+TGG | 0.524153 | 2_3:+2584587 | Msa0271280:CDS |
| AGGTGCCTCTAGTTAGGAGG+AGG | 0.526210 | 2_3:+2585313 | Msa0271280:three_prime_UTR |
| CAACCTCTTGTCGTTGACAA+TGG | 0.532453 | 2_3:+2583206 | Msa0271280:CDS |
| CTCCACGGCAGAGCTACTCT+TGG | 0.533395 | 2_3:-2584480 | None:intergenic |
| GAAAGTCTCAAACATAATCT+GGG | 0.537293 | 2_3:-2583661 | None:intergenic |
| ATCCAAACGAAGAATTGCAT+GGG | 0.537295 | 2_3:-2584306 | None:intergenic |
| ATTGGGCGACCTCGTCATAC+CGG | 0.538513 | 2_3:+2583405 | Msa0271280:CDS |
| CTTCTCAGCTGAGGTACTGA+AGG | 0.541718 | 2_3:-2584387 | None:intergenic |
| CCATACCAATTAGAGAAGGC+TGG | 0.544939 | 2_3:-2584577 | None:intergenic |
| CTAATTTCTCTTTGACATCA+CGG | 0.547018 | 2_3:-2584418 | None:intergenic |
| TGCAGGCGATGATGCTCCTA+GGG | 0.559836 | 2_3:+2583365 | Msa0271280:CDS |
| TTTAGGATTGAGTGGAGCCT+CGG | 0.559877 | 2_3:-2583619 | None:intergenic |
| AGAAGGCTGGAAGAGTACTT+CGG | 0.560097 | 2_3:-2584564 | None:intergenic |
| TATGCCAGTGGACGTACCAC+AGG | 0.563139 | 2_3:+2583729 | Msa0271280:CDS |
| GGTCAGAAGGATGCTTATGT+AGG | 0.563553 | 2_3:+2583444 | Msa0271280:CDS |
| AAGAGCTACGAGTTGCCTGA+TGG | 0.564122 | 2_3:+2584503 | Msa0271280:CDS |
| AATGGTTGGGATGGGTCAGA+AGG | 0.565362 | 2_3:+2583431 | Msa0271280:CDS |
| AGGGTGAATATGATGAATCT+GGG | 0.568343 | 2_3:+2584987 | Msa0271280:CDS |
| CTATATTTGTATGAGGTGAT+GGG | 0.569837 | 2_3:+2585465 | Msa0271280:three_prime_UTR |
| ATACTGGGGAACACGGCCCT+AGG | 0.571955 | 2_3:-2583381 | None:intergenic |
| GGAAATATTGTGCTTAGTGG+AGG | 0.572013 | 2_3:+2584674 | Msa0271280:CDS |
| ATCAACATCACACTTCATGA+TGG | 0.572991 | 2_3:-2584633 | None:intergenic |
| CATACAGAGATAAGACGGCC+TGG | 0.574959 | 2_3:-2583710 | None:intergenic |
| GATCCAAACGAAGAATTGCA+TGG | 0.574973 | 2_3:-2584307 | None:intergenic |
| GTGGAGAAGCGAGCGAGGAG+TGG | 0.580963 | 2_3:-2582622 | None:intergenic |
| GGAAGAGTACTTCGGGGCAA+CGG | 0.581700 | 2_3:-2584556 | None:intergenic |
| AGTACAGTGTCTGGATTGGT+GGG | 0.583080 | 2_3:+2584798 | Msa0271280:CDS |
| ACCGGTGTAATGGTTGGGAT+GGG | 0.584646 | 2_3:+2583423 | Msa0271280:CDS |
| ATCGTGCTTGATTCTGGTGA+TGG | 0.587559 | 2_3:+2584242 | Msa0271280:CDS |
| TCCAAGTAGCATGAAAATCA+AGG | 0.588368 | 2_3:+2584754 | Msa0271280:CDS |
| GTTCCATTGTCAACGACAAG+AGG | 0.589221 | 2_3:-2583209 | None:intergenic |
| GAACAAGGTTTATATATGAA+GGG | 0.591054 | 2_3:-2582571 | None:intergenic |
| GTCTTATCTCTGTATGCCAG+TGG | 0.591211 | 2_3:+2583717 | Msa0271280:CDS |
| GAACGGTGGAGAAGCGAGCG+AGG | 0.591368 | 2_3:-2582627 | None:intergenic |
| TATGCAGATGTGGATCTCCA+AGG | 0.595738 | 2_3:+2584967 | Msa0271280:intron |
| TTTAGGTGCCTCTAGTTAGG+AGG | 0.597583 | 2_3:+2585310 | Msa0271280:three_prime_UTR |
| GTGAAAATTCTCACTGAGAG+AGG | 0.601733 | 2_3:+2584359 | Msa0271280:CDS |
| CAATGGAACTGGAATGGTCA+AGG | 0.605491 | 2_3:+2583223 | Msa0271280:CDS |
| TTGAAGTATCCTATAGAGCA+TGG | 0.607917 | 2_3:+2583501 | Msa0271280:CDS |
| TTCGGGGCAACGGAATCTCT+CGG | 0.608877 | 2_3:-2584546 | None:intergenic |
| AAAGTGTGTCAGAGAGAACA+AGG | 0.609943 | 2_3:-2582586 | None:intergenic |
| TACCAAGAGTAGCTCTGCCG+TGG | 0.610567 | 2_3:+2584478 | Msa0271280:CDS |
| GACAATTTCCTTCTCAGCTG+AGG | 0.611009 | 2_3:-2584396 | None:intergenic |
| AGGAAGTACAGTGTCTGGAT+TGG | 0.611355 | 2_3:+2584794 | Msa0271280:CDS |
| ATGCAGATGTGGATCTCCAA+GGG | 0.617585 | 2_3:+2584968 | Msa0271280:intron |
| GTGAGTTCATACCTGTTGAA+AGG | 0.619084 | 2_3:-2584843 | None:intergenic |
| TGAAAAGATGGCTGATGCTG+AGG | 0.621234 | 2_3:+2583178 | Msa0271280:exon |
| AATTGCTGACCGTATGAGCA+AGG | 0.626661 | 2_3:+2584715 | Msa0271280:CDS |
| AGGTTTATATATGAAGGGTG+AGG | 0.629792 | 2_3:-2582566 | None:intergenic |
| ATATCTATTTCTCCCAGACA+GGG | 0.631530 | 2_3:+2585348 | Msa0271280:three_prime_UTR |
| GCATGGTATAGTTAGTAACT+GGG | 0.634959 | 2_3:+2583518 | Msa0271280:CDS |
| GCTTCCATACCAATTAGAGA+AGG | 0.635424 | 2_3:-2584581 | None:intergenic |
| GGTGCCTCTAGTTAGGAGGA+GGG | 0.639087 | 2_3:+2585314 | Msa0271280:three_prime_UTR |
| CGTTGACAATGGAACTGGAA+TGG | 0.640256 | 2_3:+2583217 | Msa0271280:CDS |
| GTGTGATGTTGATATTAGGA+AGG | 0.640348 | 2_3:+2584643 | Msa0271280:CDS |
| ACCCATCCCAACCATTACAC+CGG | 0.641755 | 2_3:-2583424 | None:intergenic |
| CTCACCCTCCTCCTAACTAG+AGG | 0.644958 | 2_3:-2585318 | None:intergenic |
| ACCATTACACCGGTATGACG+AGG | 0.651416 | 2_3:-2583414 | None:intergenic |
| ACTGGCATACAGAGATAAGA+CGG | 0.654330 | 2_3:-2583715 | None:intergenic |
| AGGTGGTTGCACCTCCTGAG+AGG | 0.655646 | 2_3:+2584774 | Msa0271280:CDS |
| CTATAGGATACTTCAATGTG+AGG | 0.657321 | 2_3:-2583494 | None:intergenic |
| ACACAGTGCCCATATATGAA+GGG | 0.658479 | 2_3:+2584273 | Msa0271280:CDS |
| ACACTGTACTTCCTCTCAGG+AGG | 0.673323 | 2_3:-2584785 | None:intergenic |
| ACACCCTGTGCTTCTTACCG+AGG | 0.679352 | 2_3:+2583602 | Msa0271280:CDS |
| AAGGCTGGAAGAGTACTTCG+GGG | 0.692122 | 2_3:-2584562 | None:intergenic |
| TCCAAACGAAGAATTGCATG+GGG | 0.695056 | 2_3:-2584305 | None:intergenic |
| GAGCCTCGGTAAGAAGCACA+GGG | 0.711665 | 2_3:-2583605 | None:intergenic |
| CAACTCGTAGCTCTTCTCCA+CGG | 0.712406 | 2_3:-2584495 | None:intergenic |
| AAGTAGCATGAAAATCAAGG+TGG | 0.729568 | 2_3:+2584757 | Msa0271280:CDS |
| GAGGTCGCCCAATAATACTG+GGG | 0.763376 | 2_3:-2583395 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTTATAATGATTTATT+AGG | + | chr2_3:2584165-2584184 | Msa0271280:intron | 10.0% |
| !! | TGGAAAAGAAAAAAAAAAAT+TGG | - | chr2_3:2584887-2584906 | None:intergenic | 15.0% |
| !!! | AATATATCTAGTTTAATGAA+TGG | + | chr2_3:2585143-2585162 | Msa0271280:three_prime_UTR | 15.0% |
| !!! | ATATTTATTTTATGCTTAGT+TGG | + | chr2_3:2585391-2585410 | Msa0271280:three_prime_UTR | 15.0% |
| !! | TTTCAACAAAATTAACAGAT+CGG | - | chr2_3:2583023-2583042 | None:intergenic | 20.0% |
| !! | TTATATAATTTCGTGTTTGA+AGG | + | chr2_3:2583084-2583103 | Msa0271280:intron | 20.0% |
| !! | ACAAACAATTCTATATGTAT+TGG | + | chr2_3:2584069-2584088 | Msa0271280:intron | 20.0% |
| ! | GAACAAGGTTTATATATGAA+GGG | - | chr2_3:2582574-2582593 | None:intergenic | 25.0% |
| ! | AGAACAAGGTTTATATATGA+AGG | - | chr2_3:2582575-2582594 | None:intergenic | 25.0% |
| ! | GAATCAAAAAAATCAAATCC+AGG | - | chr2_3:2582894-2582913 | None:intergenic | 25.0% |
| ! | TTGAAGGAATTATGAAATCA+CGG | + | chr2_3:2583100-2583119 | Msa0271280:intron | 25.0% |
| ! | ATGTACATGTCTTTAAACTT+CGG | + | chr2_3:2583894-2583913 | Msa0271280:intron | 25.0% |
| ! | CAAACTGCATATAAAATTTC+AGG | - | chr2_3:2583934-2583953 | None:intergenic | 25.0% |
| !!! | TGTACATTTGTTATTATGCA+AGG | - | chr2_3:2584129-2584148 | None:intergenic | 25.0% |
| ! | TGCATAATAACAAATGTACA+AGG | + | chr2_3:2584129-2584148 | Msa0271280:intron | 25.0% |
| ! | CATTTCTTGTTCAAAATCAA+GGG | - | chr2_3:2584453-2584472 | None:intergenic | 25.0% |
| !! | TTCTTTTCCAATTGTCATAA+TGG | + | chr2_3:2584897-2584916 | Msa0271280:intron | 25.0% |
| ! | ATGCTATATGTTTCTTCTTT+AGG | + | chr2_3:2585181-2585200 | Msa0271280:three_prime_UTR | 25.0% |
| !!! | CTTTTATTTGTTTTTCATGC+TGG | + | chr2_3:2585280-2585299 | Msa0271280:three_prime_UTR | 25.0% |
| ! | CCTCATACAAATATAGATTA+AGG | - | chr2_3:2585461-2585480 | None:intergenic | 25.0% |
| ! | CCTTAATCTATATTTGTATG+AGG | + | chr2_3:2585458-2585477 | Msa0271280:three_prime_UTR | 25.0% |
| !!! | CGCTTTTTTAATCGTTTACT+TGG | + | chr2_3:2582716-2582735 | Msa0271280:intron | 30.0% |
| !!! | ACTTGGTCTTTTTTTGTTTC+TGG | + | chr2_3:2582733-2582752 | Msa0271280:intron | 30.0% |
| !!! | GTCTTTTTTTGTTTCTGGAT+CGG | + | chr2_3:2582738-2582757 | Msa0271280:intron | 30.0% |
| !!! | ATCTTTTCTCTATTGGCTTT+AGG | - | chr2_3:2583639-2583658 | None:intergenic | 30.0% |
| GAAAGTCTCAAACATAATCT+GGG | - | chr2_3:2583664-2583683 | None:intergenic | 30.0% | |
| TGAAAGTCTCAAACATAATC+TGG | - | chr2_3:2583665-2583684 | None:intergenic | 30.0% | |
| TGTGATCATGTATCTTCAAT+TGG | + | chr2_3:2583786-2583805 | Msa0271280:intron | 30.0% | |
| TTGTACATGTCTTGAAACTT+TGG | + | chr2_3:2583977-2583996 | Msa0271280:intron | 30.0% | |
| GCAACTTGAAATTCTATATG+CGG | + | chr2_3:2584010-2584029 | Msa0271280:intron | 30.0% | |
| TGTACAAGGATGATAATACA+TGG | + | chr2_3:2584143-2584162 | Msa0271280:intron | 30.0% | |
| ACAAACAATTCAAACCATGA+AGG | - | chr2_3:2584211-2584230 | None:intergenic | 30.0% | |
| TTGAATTGTTTGTTCTACGT+AGG | + | chr2_3:2584218-2584237 | Msa0271280:intron | 30.0% | |
| CTAATTTCTCTTTGACATCA+CGG | - | chr2_3:2584421-2584440 | None:intergenic | 30.0% | |
| CAAAGAGAAATTAGCATATG+TGG | + | chr2_3:2584427-2584446 | Msa0271280:CDS | 30.0% | |
| CCATTTCTTGTTCAAAATCA+AGG | - | chr2_3:2584454-2584473 | None:intergenic | 30.0% | |
| ! | CCTTGATTTTGAACAAGAAA+TGG | + | chr2_3:2584451-2584470 | Msa0271280:CDS | 30.0% |
| TGAAGTGTGATGTTGATATT+AGG | + | chr2_3:2584639-2584658 | Msa0271280:CDS | 30.0% | |
| GATATTAGGAAGGATCTATA+TGG | + | chr2_3:2584653-2584672 | Msa0271280:CDS | 30.0% | |
| TATGGAAATATTGTGCTTAG+TGG | + | chr2_3:2584671-2584690 | Msa0271280:CDS | 30.0% | |
| ! | TTCCAATTGTCATAATGGAA+TGG | + | chr2_3:2584902-2584921 | Msa0271280:intron | 30.0% |
| ! | TAATGGAATGGACCATTTTA+TGG | + | chr2_3:2584914-2584933 | Msa0271280:intron | 30.0% |
| ! | AATGGAATGGACCATTTTAT+GGG | + | chr2_3:2584915-2584934 | Msa0271280:intron | 30.0% |
| TGTTTAATTCTATGCAGATG+TGG | + | chr2_3:2584957-2584976 | Msa0271280:intron | 30.0% | |
| AGAATTTGATCACAACTCAT+TGG | - | chr2_3:2585056-2585075 | None:intergenic | 30.0% | |
| AACCAAACTTGACTGAAATA+TGG | - | chr2_3:2585089-2585108 | None:intergenic | 30.0% | |
| TGACTTATTATTTGATGCTG+TGG | + | chr2_3:2585108-2585127 | Msa0271280:three_prime_UTR | 30.0% | |
| GACTTATTATTTGATGCTGT+GGG | + | chr2_3:2585109-2585128 | Msa0271280:three_prime_UTR | 30.0% | |
| CCAATTGCATAAAAATAGTC+TGG | - | chr2_3:2585217-2585236 | None:intergenic | 30.0% | |
| !!! | CCAGACTATTTTTATGCAAT+TGG | + | chr2_3:2585214-2585233 | Msa0271280:three_prime_UTR | 30.0% |
| !!! | GACTATTTTTATGCAATTGG+CGG | + | chr2_3:2585217-2585236 | Msa0271280:three_prime_UTR | 30.0% |
| !!! | ACTATTTTTATGCAATTGGC+GGG | + | chr2_3:2585218-2585237 | Msa0271280:three_prime_UTR | 30.0% |
| !!! | TTTATGCTTAGTTGGTTTTC+AGG | + | chr2_3:2585399-2585418 | Msa0271280:three_prime_UTR | 30.0% |
| TCTATATTTGTATGAGGTGA+TGG | + | chr2_3:2585464-2585483 | Msa0271280:three_prime_UTR | 30.0% | |
| CTATATTTGTATGAGGTGAT+GGG | + | chr2_3:2585465-2585484 | Msa0271280:three_prime_UTR | 30.0% | |
| AGGTTTATATATGAAGGGTG+AGG | - | chr2_3:2582569-2582588 | None:intergenic | 35.0% | |
| !! | TGTTAGAAGGAAAAAGCGTT+AGG | - | chr2_3:2582666-2582685 | None:intergenic | 35.0% |
| !!! | AACGCTTTTTCCTTCTAACA+AGG | + | chr2_3:2582666-2582685 | Msa0271280:five_prime_UTR | 35.0% |
| !!! | ATGCGTAGGTTTTGAAAAGA+TGG | + | chr2_3:2583166-2583185 | Msa0271280:intron | 35.0% |
| CTTGTACTATGTTTGTTTGC+AGG | + | chr2_3:2583335-2583354 | Msa0271280:intron | 35.0% | |
| TGATGAAGCTCAGTCAAAAA+GGG | + | chr2_3:2583467-2583486 | Msa0271280:CDS | 35.0% | |
| CTATAGGATACTTCAATGTG+AGG | - | chr2_3:2583497-2583516 | None:intergenic | 35.0% | |
| ! | TTGAAGTATCCTATAGAGCA+TGG | + | chr2_3:2583501-2583520 | Msa0271280:CDS | 35.0% |
| CTAACTATACCATGCTCTAT+AGG | - | chr2_3:2583513-2583532 | None:intergenic | 35.0% | |
| AGCATGGTATAGTTAGTAAC+TGG | + | chr2_3:2583517-2583536 | Msa0271280:CDS | 35.0% | |
| GCATGGTATAGTTAGTAACT+GGG | + | chr2_3:2583518-2583537 | Msa0271280:CDS | 35.0% | |
| CATCAACAAAAACAAACCTG+TGG | - | chr2_3:2583748-2583767 | None:intergenic | 35.0% | |
| TGTGTAATAATGCTGTGAGT+TGG | + | chr2_3:2583828-2583847 | Msa0271280:intron | 35.0% | |
| AGAGCATACCCTTCATATAT+GGG | - | chr2_3:2584284-2584303 | None:intergenic | 35.0% | |
| ! | AAGAGCATACCCTTCATATA+TGG | - | chr2_3:2584285-2584304 | None:intergenic | 35.0% |
| ATCCAAACGAAGAATTGCAT+GGG | - | chr2_3:2584309-2584328 | None:intergenic | 35.0% | |
| ATCAACATCACACTTCATGA+TGG | - | chr2_3:2584636-2584655 | None:intergenic | 35.0% | |
| GTGTGATGTTGATATTAGGA+AGG | + | chr2_3:2584643-2584662 | Msa0271280:CDS | 35.0% | |
| TCCAAGTAGCATGAAAATCA+AGG | + | chr2_3:2584754-2584773 | Msa0271280:CDS | 35.0% | |
| ! | ACCTTGATTTTCATGCTACT+TGG | - | chr2_3:2584758-2584777 | None:intergenic | 35.0% |
| AAGTAGCATGAAAATCAAGG+TGG | + | chr2_3:2584757-2584776 | Msa0271280:CDS | 35.0% | |
| GTCCATTCCATTATGACAAT+TGG | - | chr2_3:2584907-2584926 | None:intergenic | 35.0% | |
| ! | GACCATTTTATGGGATTCAT+GGG | + | chr2_3:2584924-2584943 | Msa0271280:intron | 35.0% |
| ! | ACCATTTTATGGGATTCATG+GGG | + | chr2_3:2584925-2584944 | Msa0271280:intron | 35.0% |
| AGATTCATCATATTCACCCT+TGG | - | chr2_3:2584987-2585006 | None:intergenic | 35.0% | |
| AAGGGTGAATATGATGAATC+TGG | + | chr2_3:2584986-2585005 | Msa0271280:CDS | 35.0% | |
| AGGGTGAATATGATGAATCT+GGG | + | chr2_3:2584987-2585006 | Msa0271280:CDS | 35.0% | |
| TGCCATATTTCAGTCAAGTT+TGG | + | chr2_3:2585084-2585103 | Msa0271280:three_prime_UTR | 35.0% | |
| ATGTTTCTTCTTTAGGTCCT+TGG | + | chr2_3:2585188-2585207 | Msa0271280:three_prime_UTR | 35.0% | |
| ! | TAAAAATAGTCTGGCTTCCA+AGG | - | chr2_3:2585208-2585227 | None:intergenic | 35.0% |
| TGAACTTTGTAGGTTCTGTT+TGG | + | chr2_3:2585248-2585267 | Msa0271280:three_prime_UTR | 35.0% | |
| TTCATGCTGGTCATGAATTT+AGG | + | chr2_3:2585293-2585312 | Msa0271280:three_prime_UTR | 35.0% | |
| ! | ATATCTATTTCTCCCAGACA+GGG | + | chr2_3:2585348-2585367 | Msa0271280:three_prime_UTR | 35.0% |
| GCAAATCAAACAAACCCTAT+AGG | - | chr2_3:2585491-2585510 | None:intergenic | 35.0% | |
| AAAGTGTGTCAGAGAGAACA+AGG | - | chr2_3:2582589-2582608 | None:intergenic | 40.0% | |
| !! | AAAGCGTTAGGATTTTGCAG+CGG | - | chr2_3:2582654-2582673 | None:intergenic | 40.0% |
| TTGAAACGCACCTTGTTAGA+AGG | - | chr2_3:2582679-2582698 | None:intergenic | 40.0% | |
| GATCGGAAACATGCATATGA+AGG | - | chr2_3:2583006-2583025 | None:intergenic | 40.0% | |
| GTTCTTTCTGTTGTATGCGT+AGG | + | chr2_3:2583152-2583171 | Msa0271280:intron | 40.0% | |
| TACTATGTTTGTTTGCAGGC+TGG | + | chr2_3:2583339-2583358 | Msa0271280:intron | 40.0% | |
| GTGATGAAGCTCAGTCAAAA+AGG | + | chr2_3:2583466-2583485 | Msa0271280:CDS | 40.0% | |
| GATGAAGCTCAGTCAAAAAG+GGG | + | chr2_3:2583468-2583487 | Msa0271280:CDS | 40.0% | |
| AGTTAGTAACTGGGACGATA+TGG | + | chr2_3:2583527-2583546 | Msa0271280:CDS | 40.0% | |
| GGGACGATATGGAAAAGATT+TGG | + | chr2_3:2583538-2583557 | Msa0271280:CDS | 40.0% | |
| !! | CTATTGGCTTTAGGATTGAG+TGG | - | chr2_3:2583630-2583649 | None:intergenic | 40.0% |
| ! | CTGGGTCATCTTTTCTCTAT+TGG | - | chr2_3:2583646-2583665 | None:intergenic | 40.0% |
| TGGATTGCAACATACATTGC+AGG | - | chr2_3:2583693-2583712 | None:intergenic | 40.0% | |
| TGCAATGTATGTTGCAATCC+AGG | + | chr2_3:2583692-2583711 | Msa0271280:CDS | 40.0% | |
| ACTGGCATACAGAGATAAGA+CGG | - | chr2_3:2583718-2583737 | None:intergenic | 40.0% | |
| GTCTTTAAACTTCGGTTAGC+TGG | + | chr2_3:2583902-2583921 | Msa0271280:intron | 40.0% | |
| GTCTTGAAACTTTGGTTAGC+TGG | + | chr2_3:2583985-2584004 | Msa0271280:intron | 40.0% | |
| CATGAAGGAAATAGCGTTAC+AGG | - | chr2_3:2584196-2584215 | None:intergenic | 40.0% | |
| ! | CTGTAACGCTATTTCCTTCA+TGG | + | chr2_3:2584194-2584213 | Msa0271280:intron | 40.0% |
| ACACAGTGCCCATATATGAA+GGG | + | chr2_3:2584273-2584292 | Msa0271280:CDS | 40.0% | |
| TCCAAACGAAGAATTGCATG+GGG | - | chr2_3:2584308-2584327 | None:intergenic | 40.0% | |
| GATCCAAACGAAGAATTGCA+TGG | - | chr2_3:2584310-2584329 | None:intergenic | 40.0% | |
| ATTCTTCGTTTGGATCTTGC+TGG | + | chr2_3:2584314-2584333 | Msa0271280:CDS | 40.0% | |
| TTCTTCGTTTGGATCTTGCT+GGG | + | chr2_3:2584315-2584334 | Msa0271280:CDS | 40.0% | |
| ! | GCGTGATTTAACAGAGTACT+TGG | + | chr2_3:2584337-2584356 | Msa0271280:CDS | 40.0% |
| GTGAAAATTCTCACTGAGAG+AGG | + | chr2_3:2584359-2584378 | Msa0271280:CDS | 40.0% | |
| ATTGTTATGACCTGTCCATC+AGG | - | chr2_3:2584521-2584540 | None:intergenic | 40.0% | |
| GATGGACAGGTCATAACAAT+AGG | + | chr2_3:2584521-2584540 | Msa0271280:CDS | 40.0% | |
| GCTTCCATACCAATTAGAGA+AGG | - | chr2_3:2584584-2584603 | None:intergenic | 40.0% | |
| CTAATTGGTATGGAAGCTAC+TGG | + | chr2_3:2584587-2584606 | Msa0271280:CDS | 40.0% | |
| GGAAATATTGTGCTTAGTGG+AGG | + | chr2_3:2584674-2584693 | Msa0271280:CDS | 40.0% | |
| !! | CACTGATTTCCTTGCTCATA+CGG | - | chr2_3:2584727-2584746 | None:intergenic | 40.0% |
| ATCACTCAGTACCTTTCAAC+AGG | + | chr2_3:2584832-2584851 | Msa0271280:CDS | 40.0% | |
| GTGAGTTCATACCTGTTGAA+AGG | - | chr2_3:2584846-2584865 | None:intergenic | 40.0% | |
| ! | GGACCATTTTATGGGATTCA+TGG | + | chr2_3:2584923-2584942 | Msa0271280:intron | 40.0% |
| ACCCCATGAATCCCATAAAA+TGG | - | chr2_3:2584929-2584948 | None:intergenic | 40.0% | |
| ! | TTTTTATGCAATTGGCGGGA+TGG | + | chr2_3:2585222-2585241 | Msa0271280:three_prime_UTR | 40.0% |
| ! | GGGATGGTATTGAACTTTGT+AGG | + | chr2_3:2585238-2585257 | Msa0271280:three_prime_UTR | 40.0% |
| GAATTTAGGTGCCTCTAGTT+AGG | + | chr2_3:2585307-2585326 | Msa0271280:three_prime_UTR | 40.0% | |
| ! | CATATCTATTTCTCCCAGAC+AGG | + | chr2_3:2585347-2585366 | Msa0271280:three_prime_UTR | 40.0% |
| TGACTCAAAATTCCCTGTCT+GGG | - | chr2_3:2585363-2585382 | None:intergenic | 40.0% | |
| ATGACTCAAAATTCCCTGTC+TGG | - | chr2_3:2585364-2585383 | None:intergenic | 40.0% | |
| ! | TAGGATTTTGCAGCGGAGAA+CGG | - | chr2_3:2582647-2582666 | None:intergenic | 45.0% |
| !!! | AAGCTGCTTTTTGATGCACC+TGG | + | chr2_3:2582873-2582892 | Msa0271280:intron | 45.0% |
| TGAAAAGATGGCTGATGCTG+AGG | + | chr2_3:2583178-2583197 | Msa0271280:exon | 45.0% | |
| CAACCTCTTGTCGTTGACAA+TGG | + | chr2_3:2583206-2583225 | Msa0271280:CDS | 45.0% | |
| GTTCCATTGTCAACGACAAG+AGG | - | chr2_3:2583212-2583231 | None:intergenic | 45.0% | |
| CTTGTCGTTGACAATGGAAC+TGG | + | chr2_3:2583212-2583231 | Msa0271280:CDS | 45.0% | |
| CGTTGACAATGGAACTGGAA+TGG | + | chr2_3:2583217-2583236 | Msa0271280:CDS | 45.0% | |
| CAATGGAACTGGAATGGTCA+AGG | + | chr2_3:2583223-2583242 | Msa0271280:CDS | 45.0% | |
| CCCAATAATACTGGGGAACA+CGG | - | chr2_3:2583391-2583410 | None:intergenic | 45.0% | |
| CCGTGTTCCCCAGTATTATT+GGG | + | chr2_3:2583388-2583407 | Msa0271280:CDS | 45.0% | |
| GTCATACCGGTGTAATGGTT+GGG | + | chr2_3:2583418-2583437 | Msa0271280:CDS | 45.0% | |
| GGTCAGAAGGATGCTTATGT+AGG | + | chr2_3:2583444-2583463 | Msa0271280:CDS | 45.0% | |
| ! | TTTAGGATTGAGTGGAGCCT+CGG | - | chr2_3:2583622-2583641 | None:intergenic | 45.0% |
| GTCTTATCTCTGTATGCCAG+TGG | + | chr2_3:2583717-2583736 | Msa0271280:CDS | 45.0% | |
| ! | GTAGGTATCGTGCTTGATTC+TGG | + | chr2_3:2584236-2584255 | Msa0271280:intron | 45.0% |
| ATCGTGCTTGATTCTGGTGA+TGG | + | chr2_3:2584242-2584261 | Msa0271280:CDS | 45.0% | |
| CACACAGTGCCCATATATGA+AGG | + | chr2_3:2584272-2584291 | Msa0271280:CDS | 45.0% | |
| TCCCCATGCAATTCTTCGTT+TGG | + | chr2_3:2584304-2584323 | Msa0271280:CDS | 45.0% | |
| GACAATTTCCTTCTCAGCTG+AGG | - | chr2_3:2584399-2584418 | None:intergenic | 45.0% | |
| !! | AGAAGGCTGGAAGAGTACTT+CGG | - | chr2_3:2584567-2584586 | None:intergenic | 45.0% |
| CTCTTCCAGCCTTCTCTAAT+TGG | + | chr2_3:2584572-2584591 | Msa0271280:CDS | 45.0% | |
| CCATACCAATTAGAGAAGGC+TGG | - | chr2_3:2584580-2584599 | None:intergenic | 45.0% | |
| CCAGCCTTCTCTAATTGGTA+TGG | + | chr2_3:2584577-2584596 | Msa0271280:CDS | 45.0% | |
| GGAGGTTCTACTATGTTTCC+TGG | + | chr2_3:2584692-2584711 | Msa0271280:CDS | 45.0% | |
| AATTGCTGACCGTATGAGCA+AGG | + | chr2_3:2584715-2584734 | Msa0271280:CDS | 45.0% | |
| ! | AGGAAGTACAGTGTCTGGAT+TGG | + | chr2_3:2584794-2584813 | Msa0271280:CDS | 45.0% |
| ! | AAGTACAGTGTCTGGATTGG+TGG | + | chr2_3:2584797-2584816 | Msa0271280:CDS | 45.0% |
| !! | AGTACAGTGTCTGGATTGGT+GGG | + | chr2_3:2584798-2584817 | Msa0271280:CDS | 45.0% |
| TATGCAGATGTGGATCTCCA+AGG | + | chr2_3:2584967-2584986 | Msa0271280:intron | 45.0% | |
| ATGCAGATGTGGATCTCCAA+GGG | + | chr2_3:2584968-2584987 | Msa0271280:intron | 45.0% | |
| CACTTTCGGTGAACAATAGC+TGG | - | chr2_3:2585013-2585032 | None:intergenic | 45.0% | |
| !! | ACCGAAAGTGCTTCTGAGAT+GGG | + | chr2_3:2585023-2585042 | Msa0271280:exon | 45.0% |
| !! | ACCCATCTCAGAAGCACTTT+CGG | - | chr2_3:2585027-2585046 | None:intergenic | 45.0% |
| TTTAGGTGCCTCTAGTTAGG+AGG | + | chr2_3:2585310-2585329 | Msa0271280:three_prime_UTR | 45.0% | |
| !! | TATGAGGTGATGGGCCTATA+GGG | + | chr2_3:2585474-2585493 | Msa0271280:three_prime_UTR | 45.0% |
| !!! | TGTTTGCAGGCTGGTTTTGC+AGG | + | chr2_3:2583348-2583367 | Msa0271280:intron | 50.0% |
| GCCGTGTTCCCCAGTATTAT+TGG | + | chr2_3:2583387-2583406 | Msa0271280:CDS | 50.0% | |
| GAGGTCGCCCAATAATACTG+GGG | - | chr2_3:2583398-2583417 | None:intergenic | 50.0% | |
| CGAGGTCGCCCAATAATACT+GGG | - | chr2_3:2583399-2583418 | None:intergenic | 50.0% | |
| ACGAGGTCGCCCAATAATAC+TGG | - | chr2_3:2583400-2583419 | None:intergenic | 50.0% | |
| ACCTCGTCATACCGGTGTAA+TGG | + | chr2_3:2583413-2583432 | Msa0271280:CDS | 50.0% | |
| ACCATTACACCGGTATGACG+AGG | - | chr2_3:2583417-2583436 | None:intergenic | 50.0% | |
| CGTCATACCGGTGTAATGGT+TGG | + | chr2_3:2583417-2583436 | Msa0271280:CDS | 50.0% | |
| TACCGGTGTAATGGTTGGGA+TGG | + | chr2_3:2583422-2583441 | Msa0271280:CDS | 50.0% | |
| ACCGGTGTAATGGTTGGGAT+GGG | + | chr2_3:2583423-2583442 | Msa0271280:CDS | 50.0% | |
| ACCCATCCCAACCATTACAC+CGG | - | chr2_3:2583427-2583446 | None:intergenic | 50.0% | |
| AATGGTTGGGATGGGTCAGA+AGG | + | chr2_3:2583431-2583450 | Msa0271280:CDS | 50.0% | |
| ! | AGAAGCACAGGGTGTTCTTC+TGG | - | chr2_3:2583597-2583616 | None:intergenic | 50.0% |
| CATACAGAGATAAGACGGCC+TGG | - | chr2_3:2583713-2583732 | None:intergenic | 50.0% | |
| !! | CTTCTCAGCTGAGGTACTGA+AGG | - | chr2_3:2584390-2584409 | None:intergenic | 50.0% |
| CTTCAGTACCTCAGCTGAGA+AGG | + | chr2_3:2584388-2584407 | Msa0271280:CDS | 50.0% | |
| CAACTCGTAGCTCTTCTCCA+CGG | - | chr2_3:2584498-2584517 | None:intergenic | 50.0% | |
| AAGAGCTACGAGTTGCCTGA+TGG | + | chr2_3:2584503-2584522 | Msa0271280:CDS | 50.0% | |
| !! | AAGGCTGGAAGAGTACTTCG+GGG | - | chr2_3:2584565-2584584 | None:intergenic | 50.0% |
| !! | GAAGGCTGGAAGAGTACTTC+GGG | - | chr2_3:2584566-2584585 | None:intergenic | 50.0% |
| CTCATACGGTCAGCAATTCC+AGG | - | chr2_3:2584713-2584732 | None:intergenic | 50.0% | |
| ACACTGTACTTCCTCTCAGG+AGG | - | chr2_3:2584788-2584807 | None:intergenic | 50.0% | |
| CAGACACTGTACTTCCTCTC+AGG | - | chr2_3:2584791-2584810 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAAGTACAGTGTC+TGG | + | chr2_3:2584789-2584808 | Msa0271280:CDS | 50.0% |
| !! | CTGGATTGGTGGGTCTATCT+TGG | + | chr2_3:2584808-2584827 | Msa0271280:CDS | 50.0% |
| !! | CACCGAAAGTGCTTCTGAGA+TGG | + | chr2_3:2585022-2585041 | Msa0271280:exon | 50.0% |
| !! | GTATGAGGTGATGGGCCTAT+AGG | + | chr2_3:2585473-2585492 | Msa0271280:three_prime_UTR | 50.0% |
| !! | CGAGGAGTGGGAAGTGTTAC+AGG | - | chr2_3:2582612-2582631 | None:intergenic | 55.0% |
| ! | GATTTTGCAGCGGAGAACGG+TGG | - | chr2_3:2582644-2582663 | None:intergenic | 55.0% |
| TTGCAGGCGATGATGCTCCT+AGG | + | chr2_3:2583364-2583383 | Msa0271280:CDS | 55.0% | |
| TGCAGGCGATGATGCTCCTA+GGG | + | chr2_3:2583365-2583384 | Msa0271280:CDS | 55.0% | |
| ATTGGGCGACCTCGTCATAC+CGG | + | chr2_3:2583405-2583424 | Msa0271280:CDS | 55.0% | |
| ACACCCTGTGCTTCTTACCG+AGG | + | chr2_3:2583602-2583621 | Msa0271280:CDS | 55.0% | |
| ! | GAGCCTCGGTAAGAAGCACA+GGG | - | chr2_3:2583608-2583627 | None:intergenic | 55.0% |
| TATGCCAGTGGACGTACCAC+AGG | + | chr2_3:2583729-2583748 | Msa0271280:CDS | 55.0% | |
| CAAACCTGTGGTACGTCCAC+TGG | - | chr2_3:2583736-2583755 | None:intergenic | 55.0% | |
| ! | TACCAAGAGTAGCTCTGCCG+TGG | + | chr2_3:2584478-2584497 | Msa0271280:CDS | 55.0% |
| ! | CTACGAGTTGCCTGATGGAC+AGG | + | chr2_3:2584508-2584527 | Msa0271280:CDS | 55.0% |
| TTCGGGGCAACGGAATCTCT+CGG | - | chr2_3:2584549-2584568 | None:intergenic | 55.0% | |
| !! | GGAAGAGTACTTCGGGGCAA+CGG | - | chr2_3:2584559-2584578 | None:intergenic | 55.0% |
| AGGTGCCTCTAGTTAGGAGG+AGG | + | chr2_3:2585313-2585332 | Msa0271280:three_prime_UTR | 55.0% | |
| GGTGCCTCTAGTTAGGAGGA+GGG | + | chr2_3:2585314-2585333 | Msa0271280:three_prime_UTR | 55.0% | |
| CTCACCCTCCTCCTAACTAG+AGG | - | chr2_3:2585321-2585340 | None:intergenic | 55.0% | |
| TGGAGAAGCGAGCGAGGAGT+GGG | - | chr2_3:2582624-2582643 | None:intergenic | 60.0% | |
| ATACTGGGGAACACGGCCCT+AGG | - | chr2_3:2583384-2583403 | None:intergenic | 60.0% | |
| ! | GGAGCCTCGGTAAGAAGCAC+AGG | - | chr2_3:2583609-2583628 | None:intergenic | 60.0% |
| CTCCACGGCAGAGCTACTCT+TGG | - | chr2_3:2584483-2584502 | None:intergenic | 60.0% | |
| AGGTGGTTGCACCTCCTGAG+AGG | + | chr2_3:2584774-2584793 | Msa0271280:CDS | 60.0% | |
| GTGGAGAAGCGAGCGAGGAG+TGG | - | chr2_3:2582625-2582644 | None:intergenic | 65.0% | |
| GAACGGTGGAGAAGCGAGCG+AGG | - | chr2_3:2582630-2582649 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2582563 | 2585597 | 2582563 | ID=Msa0271280;Name=Msa0271280 |
| chr2_3 | mRNA | 2582563 | 2585597 | 2582563 | ID=Msa0271280-mRNA-1;Parent=Msa0271280;Name=Msa0271280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=136|1|1|1|0.75|0.8|5|558|377 |
| chr2_3 | exon | 2582563 | 2582687 | 2582563 | ID=Msa0271280-mRNA-1:exon:1271;Parent=Msa0271280-mRNA-1 |
| chr2_3 | exon | 2583174 | 2583244 | 2583174 | ID=Msa0271280-mRNA-1:exon:1272;Parent=Msa0271280-mRNA-1 |
| chr2_3 | exon | 2583357 | 2583750 | 2583357 | ID=Msa0271280-mRNA-1:exon:1273;Parent=Msa0271280-mRNA-1 |
| chr2_3 | exon | 2584240 | 2584853 | 2584240 | ID=Msa0271280-mRNA-1:exon:1274;Parent=Msa0271280-mRNA-1 |
| chr2_3 | exon | 2584974 | 2585597 | 2584974 | ID=Msa0271280-mRNA-1:exon:1275;Parent=Msa0271280-mRNA-1 |
| chr2_3 | five_prime_UTR | 2582563 | 2582687 | 2582563 | ID=Msa0271280-mRNA-1:five_prime_utr;Parent=Msa0271280-mRNA-1 |
| chr2_3 | five_prime_UTR | 2583174 | 2583184 | 2583174 | ID=Msa0271280-mRNA-1:five_prime_utr;Parent=Msa0271280-mRNA-1 |
| chr2_3 | CDS | 2583185 | 2583244 | 2583185 | ID=Msa0271280-mRNA-1:cds;Parent=Msa0271280-mRNA-1 |
| chr2_3 | CDS | 2583357 | 2583750 | 2583357 | ID=Msa0271280-mRNA-1:cds;Parent=Msa0271280-mRNA-1 |
| chr2_3 | CDS | 2584240 | 2584853 | 2584240 | ID=Msa0271280-mRNA-1:cds;Parent=Msa0271280-mRNA-1 |
| chr2_3 | CDS | 2584974 | 2585039 | 2584974 | ID=Msa0271280-mRNA-1:cds;Parent=Msa0271280-mRNA-1 |
| chr2_3 | three_prime_UTR | 2585040 | 2585597 | 2585040 | ID=Msa0271280-mRNA-1:three_prime_utr;Parent=Msa0271280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
