AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197940 MtrunA17_Chr8g0346721 99.174 969 8 0 1 969 1 969 0.0 1973
Msa0197940 MtrunA17_Chr6g0469661 74.829 731 182 2 1 729 1 731 0.0 1078
Msa0197940 MtrunA17_Chr7g0221671 26.984 252 155 8 18 262 13 242 2.91e-14 77.4
Msa0197940 MtrunA17_Chr1g0213861 25.506 247 161 5 18 262 11 236 8.32e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197940 AT2G46520.1 68.557 970 298 3 1 965 1 968 0.0 1411
Msa0197940 AT3G59020.2 27.273 253 157 7 18 265 14 244 1.17e-15 82.4
Msa0197940 AT3G59020.1 27.273 253 157 7 18 265 14 244 1.35e-15 82.4
Msa0197940 AT2G31660.1 28.151 238 141 6 18 246 14 230 7.58e-15 80.1
Msa0197940 AT1G26170.1 21.326 558 337 14 6 511 5 512 7.99e-13 73.2

Find 285 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAATGAGGAGGAGTTTA+AGG 0.075617 2_1:-16292384 Msa0197940:CDS
GATATTCAGTTCACTGTTTC+TGG 0.091376 2_1:-16290872 Msa0197940:CDS
CGCCACCGGGTTTGCATTAA+AGG 0.121487 2_1:+16291983 None:intergenic
TCGGCGTGGCGGCGGGGTTC+AGG 0.167402 2_1:+16293175 None:intergenic
CGCCTTATGTTTCTCACATT+TGG 0.169130 2_1:-16290954 Msa0197940:CDS
CTTGCTGTGTGGACTTTGTT+AGG 0.222365 2_1:-16292341 Msa0197940:CDS
CAAGGATTGTGCGATATATT+TGG 0.232980 2_1:-16291949 Msa0197940:CDS
CAAGCGGAAATGCAGGAAAT+TGG 0.242407 2_1:+16288977 None:intergenic
CCGAATCTTAAGCTGATTAC+TGG 0.249866 2_1:-16290763 Msa0197940:CDS
TTGTGAGTCTCCAGTACTTC+TGG 0.252989 2_1:-16290695 Msa0197940:CDS
ATCCTGCAGCTTCTGCATCC+TGG 0.258895 2_1:-16290672 Msa0197940:CDS
TGAGAATATTAATCTTTATA+TGG 0.266958 2_1:-16292408 Msa0197940:CDS
TTCTGCATCCTGGGGTAAAA+TGG 0.284025 2_1:-16290662 Msa0197940:CDS
CAGCTTTGTGCACAGTTCCC+TGG 0.284744 2_1:-16290448 Msa0197940:CDS
CGAATTTGCATTGAGGGGTT+GGG 0.285078 2_1:-16291465 Msa0197940:CDS
TTGAGAAGAAAAGAGAAGTT+TGG 0.287920 2_1:+16293290 None:intergenic
TTCAGACTCTGGGAGCTTAA+AGG 0.289130 2_1:+16291557 None:intergenic
GCCTTATGTTTCTCACATTT+GGG 0.308273 2_1:-16290953 Msa0197940:CDS
TGAAGTGCCATTTGGTCTAT+TGG 0.316250 2_1:-16289036 Msa0197940:three_prime_UTR
TCCCCTTGGCTGATCTCATT+TGG 0.319827 2_1:+16291093 None:intergenic
AGAAGCGAGGGCCATGATTT+GGG 0.321584 2_1:+16292878 None:intergenic
TTGCTCTTGTGGATGAGCTT+AGG 0.321661 2_1:-16292442 Msa0197940:CDS
TGAATCATATTGAGTATATT+AGG 0.323794 2_1:-16292136 Msa0197940:CDS
TCCTGCAGCTTCTGCATCCT+GGG 0.325044 2_1:-16290671 Msa0197940:CDS
CCATGGTGAATGTGCGATTA+GGG 0.332349 2_1:+16293260 None:intergenic
TGGCGGCGGGGTTCAGGGAG+AGG 0.333918 2_1:+16293181 None:intergenic
TTCATCAGCATTGAGAAAAC+TGG 0.336053 2_1:+16291594 None:intergenic
AAGAAGCGAGGGCCATGATT+TGG 0.336122 2_1:+16292877 None:intergenic
ATGCAAACCCGGTGGCGAAT+TGG 0.341622 2_1:-16291977 Msa0197940:CDS
AAGCGGAAATGCAGGAAATT+GGG 0.347791 2_1:+16288978 None:intergenic
AGTCACAGAAATTGTGTTGT+AGG 0.352604 2_1:-16292592 Msa0197940:CDS
GAAGTGCCATTTGGTCTATT+GGG 0.356405 2_1:-16289035 Msa0197940:three_prime_UTR
ATCATGGCCCTCGCTTCTTC+CGG 0.357089 2_1:-16292873 Msa0197940:CDS
GGAAGCATTCGGAGAGGAAT+TGG 0.359953 2_1:+16293218 None:intergenic
GATTGCTTGTGAGTTGCTTA+AGG 0.364735 2_1:-16292075 Msa0197940:CDS
AGCTTTGTGCACAGTTCCCT+GGG 0.366805 2_1:-16290447 Msa0197940:CDS
GTATTGTGACACTTCTTTCT+CGG 0.370722 2_1:-16290633 Msa0197940:CDS
CTACTGACTCAAACAGATAA+TGG 0.371221 2_1:+16291394 None:intergenic
TCGTGACCAGCTTGCGGTTA+CGG 0.373029 2_1:-16292297 Msa0197940:CDS
TCCCGGGGATCATTAATATC+TGG 0.373759 2_1:+16290493 None:intergenic
AAATGTATTATGAGGGTTCT+TGG 0.376293 2_1:-16291516 Msa0197940:CDS
ACCATTGATTGAAGCGTAAT+CGG 0.377577 2_1:+16292814 None:intergenic
TGCTCTTGTGGATGAGCTTA+GGG 0.378445 2_1:-16292441 Msa0197940:CDS
AGAGGATTCGGCGTGGCGGC+GGG 0.379976 2_1:+16293168 None:intergenic
TGAGTATATTAGGAGGGATA+TGG 0.381340 2_1:-16292126 Msa0197940:CDS
TCGAATTTGCATTGAGGGGT+TGG 0.382244 2_1:-16291466 Msa0197940:CDS
AAGGGGATTGCTACGCGTTA+TGG 0.383164 2_1:-16292056 Msa0197940:CDS
GCTTTACTGTCCGCCTTCTC+TGG 0.384838 2_1:+16290911 None:intergenic
TGAAGACTAGCAACAAGTTC+CGG 0.387862 2_1:+16292854 None:intergenic
AGAGCATGAGAGGTACGATT+AGG 0.389704 2_1:+16292966 None:intergenic
AAAATCGCACTAAATATATC+AGG 0.393109 2_1:+16290802 None:intergenic
CAGGGAACTGTGCACAAAGC+TGG 0.393904 2_1:+16290449 None:intergenic
GATTATACCGCAGATTTGTC+AGG 0.398128 2_1:-16292213 Msa0197940:CDS
TGCTGATGGTCTTGCTCTTG+TGG 0.398506 2_1:-16292453 Msa0197940:CDS
CTTGTTGCTAGTCTTCAAAA+AGG 0.400301 2_1:-16292848 Msa0197940:CDS
ATGCAGGAAATTGGGGAAAG+GGG 0.403420 2_1:+16288986 None:intergenic
CGGCGTGGCGGCGGGGTTCA+GGG 0.404169 2_1:+16293176 None:intergenic
CATAGTTTGTTTGCGGCCGA+TGG 0.405046 2_1:-16292236 Msa0197940:CDS
TCCGATTACGCTTCAATCAA+TGG 0.406354 2_1:-16292815 Msa0197940:CDS
GCAAGGAAACGAACCAAATC+AGG 0.407252 2_1:+16291723 None:intergenic
TCCATGGTGAATGTGCGATT+AGG 0.408488 2_1:+16293259 None:intergenic
ATGAATGGATGGGTGAGTTT+AGG 0.409263 2_1:-16292514 Msa0197940:CDS
TGCCCTTGTGCGTCTACTCC+AGG 0.410838 2_1:-16291133 Msa0197940:CDS
GCTTGATTTGAAGTATTGTT+TGG 0.411121 2_1:-16292726 Msa0197940:CDS
ATGTTATGAAATGTATTATG+AGG 0.413049 2_1:-16291524 Msa0197940:CDS
GAGCATGAGAGGTACGATTA+GGG 0.413296 2_1:+16292967 None:intergenic
TTGCTGTGTGGACTTTGTTA+GGG 0.413943 2_1:-16292340 Msa0197940:CDS
GAGAGGATTCGGCGTGGCGG+CGG 0.414397 2_1:+16293167 None:intergenic
TCTGCAATATCTGGCATGTC+AGG 0.421184 2_1:+16290583 None:intergenic
GTTTAAGAGTTTCCAGTGGT+GGG 0.421941 2_1:+16292624 None:intergenic
TAAGATTCGGAATCCAGAAC+TGG 0.422640 2_1:+16290776 None:intergenic
TCCTCCCTCAACCTCACATT+CGG 0.426403 2_1:+16292179 None:intergenic
TCAAATATCTGCATGTAGAT+TGG 0.426703 2_1:+16291201 None:intergenic
TCTCTTGAGGGGAGTGCTGA+TGG 0.427391 2_1:-16292467 Msa0197940:CDS
GGCGGAGGAGAGAGAGGATT+CGG 0.429321 2_1:+16293156 None:intergenic
GTTAGGTTGGGAGGAGGCGG+AGG 0.429322 2_1:+16293141 None:intergenic
GAAGTTAGGTTGGGAGGAGG+CGG 0.430922 2_1:+16293138 None:intergenic
GTCAAATATGCCAAGTACTT+TGG 0.431949 2_1:+16291062 None:intergenic
GGAGGAGGCGGAGGAGAGAG+AGG 0.432967 2_1:+16293150 None:intergenic
TGAGAAGAAAAGAGAAGTTT+GGG 0.433876 2_1:+16293291 None:intergenic
AGGACGGCGAGGGCGAAGTT+AGG 0.434374 2_1:+16293124 None:intergenic
CGGCGAGGGCGAAGTTAGGT+TGG 0.440463 2_1:+16293128 None:intergenic
ATTGCTTGTGAGTTGCTTAA+GGG 0.442178 2_1:-16292074 Msa0197940:CDS
GCTGCAGGATCCAGAAGTAC+TGG 0.443966 2_1:+16290685 None:intergenic
CATGCATGCCTTTGAGCAAA+TGG 0.445037 2_1:-16288949 Msa0197940:three_prime_UTR
CGTGATTCCCGATGATAGCT+AGG 0.445613 2_1:+16292906 None:intergenic
TCCTTCCAGCATTGTAAAGT+TGG 0.446082 2_1:+16290533 None:intergenic
TTGTCCTTCCAATTCGCCAC+CGG 0.447945 2_1:+16291969 None:intergenic
CATGTGTTTGAAGTGCCATT+TGG 0.453119 2_1:-16289044 Msa0197940:three_prime_UTR
TTAATTCTCAGGATCTGTGC+TGG 0.454020 2_1:-16289269 Msa0197940:intron
TTCGTCCAACTTTACAATGC+TGG 0.457686 2_1:-16290538 Msa0197940:CDS
AGAGGAATTGGAGAGTTTGT+TGG 0.459131 2_1:+16293230 None:intergenic
GAATTTGCATTGAGGGGTTG+GGG 0.459250 2_1:-16291464 Msa0197940:CDS
TGTCCTTCCAATTCGCCACC+GGG 0.461059 2_1:+16291970 None:intergenic
CCCGATGATAGCTAGGGCTT+CGG 0.461908 2_1:+16292913 None:intergenic
GGGCTTCGGAGAGCTGAGAT+TGG 0.462047 2_1:+16292927 None:intergenic
TTATTTCAAGCCGAGGGAAA+AGG 0.463307 2_1:+16291310 None:intergenic
TACTGATTCTCTTCAGACTC+TGG 0.463688 2_1:+16291546 None:intergenic
TAAAATCCCAATAGACCAAA+TGG 0.464525 2_1:+16289029 None:intergenic
TTGAGGATCATATGAATGAA+TGG 0.467479 2_1:-16292529 Msa0197940:CDS
AGTTTGTTGGTTCCATTCCA+TGG 0.468298 2_1:+16293243 None:intergenic
CAGGGAGAGGAGAGAGAGTG+TGG 0.469257 2_1:+16293194 None:intergenic
CCAGTAATCAGCTTAAGATT+CGG 0.472206 2_1:+16290763 None:intergenic
TTTCTCGGCAAGAACAAGAC+AGG 0.475623 2_1:-16290618 Msa0197940:CDS
TGTTCATCATAGTTTGTTTG+CGG 0.478214 2_1:-16292243 Msa0197940:CDS
TAGTAAAGGACGAGGGTGGC+AGG 0.478712 2_1:-16291644 Msa0197940:CDS
TGCTCAACAAGCGGAAATGC+AGG 0.478829 2_1:+16288970 None:intergenic
GAGAGTGTGGAGGAAGCATT+CGG 0.480598 2_1:+16293207 None:intergenic
TGGAGTAGACGCACAAGGGC+AGG 0.484502 2_1:+16291135 None:intergenic
CTCAGGATCTGTGCTGGGAT+GGG 0.485325 2_1:-16289263 Msa0197940:intron
TCTACAAAGAAGGCTGCAAC+CGG 0.487821 2_1:-16291915 Msa0197940:CDS
AGTAGCCGGTCTTGTGAAGC+GGG 0.488425 2_1:-16291376 Msa0197940:CDS
CTCAAACAGATAATGGTTGA+AGG 0.488910 2_1:+16291401 None:intergenic
AACCACTCAAATGTTGCAAA+AGG 0.489513 2_1:+16289213 None:intergenic
AGTGCACCTGCCTTAAGCAT+TGG 0.489711 2_1:+16291804 None:intergenic
GTTGCTCGAATTTGCATTGA+GGG 0.490878 2_1:-16291471 Msa0197940:CDS
TTAAGAGTTTCCAGTGGTGG+GGG 0.492506 2_1:+16292626 None:intergenic
ACTAGTTATCCTTCTCTTGA+GGG 0.494715 2_1:-16292479 Msa0197940:CDS
AAGATCTGTGGAGACATAAC+CGG 0.495143 2_1:+16291896 None:intergenic
TTTAAGAGTTTCCAGTGGTG+GGG 0.502566 2_1:+16292625 None:intergenic
AGCAACGCTGTCTGATTCAC+AGG 0.503224 2_1:+16290391 None:intergenic
CTTTGGTCAGTCTATCCCCT+TGG 0.503293 2_1:+16291079 None:intergenic
ATCACGATTTCCCCAAATCA+TGG 0.503511 2_1:-16292889 Msa0197940:CDS
TGGAGACTCACAAATGAGTC+TGG 0.504113 2_1:+16290705 None:intergenic
TAATTCTCAGGATCTGTGCT+GGG 0.504229 2_1:-16289268 Msa0197940:intron
TGCATGTAGATTGGTGGGAT+GGG 0.505019 2_1:+16291210 None:intergenic
CCCAATCCTCGATTCCGAAA+AGG 0.505753 2_1:-16293002 Msa0197940:CDS
GAATGAGTATCCAATGCTTA+AGG 0.506930 2_1:-16291814 Msa0197940:CDS
TCTCAGGATCTGTGCTGGGA+TGG 0.508425 2_1:-16289264 Msa0197940:intron
TGAGAAACTCTTAATAGTAA+AGG 0.508710 2_1:-16291658 Msa0197940:CDS
AGGGAACTGTGCACAAAGCT+GGG 0.510033 2_1:+16290450 None:intergenic
GCATCAAGCACTTCTGATCA+AGG 0.510248 2_1:-16291027 Msa0197940:CDS
GAGGGTGGCAGGCTACGTTA+TGG 0.511357 2_1:-16291633 Msa0197940:CDS
TGTGGATGAGCTTAGGGCTG+CGG 0.511547 2_1:-16292435 Msa0197940:CDS
GCAAGTAACTGAAATGCGTA+TGG 0.512567 2_1:+16291258 None:intergenic
TACTAGTTATCCTTCTCTTG+AGG 0.515638 2_1:-16292480 Msa0197940:CDS
GGCGAGGGCGAAGTTAGGTT+GGG 0.516568 2_1:+16293129 None:intergenic
TGGGATTGAGCATTACTGTC+TGG 0.518638 2_1:-16289244 Msa0197940:three_prime_UTR
ACAGATAATGGTTGAAGGTG+GGG 0.520696 2_1:+16291406 None:intergenic
ATGACTTGAGGGAACCTCCC+AGG 0.521093 2_1:+16290430 None:intergenic
TTCCAGATATTAATGATCCC+CGG 0.522021 2_1:-16290495 Msa0197940:CDS
CCAGATATTGCAGAAAATGT+AGG 0.524692 2_1:-16290574 Msa0197940:CDS
AATGCAGGAAATTGGGGAAA+GGG 0.526890 2_1:+16288985 None:intergenic
CATTTGCAGTGATGACTTGA+GGG 0.527183 2_1:+16290419 None:intergenic
CCGAAGCCCTAGCTATCATC+GGG 0.527980 2_1:-16292913 Msa0197940:CDS
CCCCAGGATGCAGAAGCTGC+AGG 0.528376 2_1:+16290670 None:intergenic
TCCGAAGCCCTAGCTATCAT+CGG 0.530404 2_1:-16292914 Msa0197940:CDS
GACGAGACGGAGGACGGCGA+GGG 0.536397 2_1:+16293114 None:intergenic
ACTCCAGGCCTTCCTTCAAA+AGG 0.538342 2_1:-16291118 Msa0197940:CDS
TCACTGTTTCTGGTTAAGCA+TGG 0.538604 2_1:-16290862 Msa0197940:CDS
AACAGATAATGGTTGAAGGT+GGG 0.538694 2_1:+16291405 None:intergenic
GGTCTCTCTTTCTACAAAGA+AGG 0.540099 2_1:-16291925 Msa0197940:CDS
ATAGTTTGTTTGCGGCCGAT+GGG 0.540550 2_1:-16292235 Msa0197940:CDS
TCTTTATATGGAGAAGAATG+AGG 0.540847 2_1:-16292396 Msa0197940:CDS
GGTTTAAGAGTTTCCAGTGG+TGG 0.540962 2_1:+16292623 None:intergenic
GATAGACTGACCAAAGTACT+TGG 0.541303 2_1:-16291072 Msa0197940:CDS
AGTTGACGGCAGCGGCTTGA+CGG 0.542493 2_1:+16293065 None:intergenic
CTGCATGTAGATTGGTGGGA+TGG 0.546010 2_1:+16291209 None:intergenic
GCCCAAATGTGAGAAACATA+AGG 0.547648 2_1:+16290952 None:intergenic
AACTAATGCTCGGTTGTAAG+TGG 0.547807 2_1:+16290357 None:intergenic
GGATCATATGAATGAATGGA+TGG 0.549813 2_1:-16292525 Msa0197940:CDS
ATGTAGATTGGTGGGATGGG+TGG 0.550873 2_1:+16291213 None:intergenic
TCCAGATATTAATGATCCCC+GGG 0.552430 2_1:-16290494 Msa0197940:CDS
TCAAATGTTGCAAAAGGCTG+AGG 0.555939 2_1:+16289219 None:intergenic
ACATTTGCAGTGATGACTTG+AGG 0.556182 2_1:+16290418 None:intergenic
TGTTATGAAATGTATTATGA+GGG 0.556990 2_1:-16291523 Msa0197940:CDS
GGTTATCTTCAGCGGACCAA+CGG 0.558438 2_1:+16293023 None:intergenic
AATATCTGCATGTAGATTGG+TGG 0.558745 2_1:+16291204 None:intergenic
GCAGAAGTATACTCGAAAGT+AGG 0.559104 2_1:+16289178 None:intergenic
TTGCTTGTGAGTTGCTTAAG+GGG 0.562415 2_1:-16292073 Msa0197940:CDS
CAGTAGCCGGTCTTGTGAAG+CGG 0.563321 2_1:-16291377 Msa0197940:CDS
TGATTCCGAATGTGAGGTTG+AGG 0.563458 2_1:-16292184 Msa0197940:CDS
CGGACCAACGGAGACGGAGG+TGG 0.565978 2_1:+16293035 None:intergenic
GGCGAAGTTAGGTTGGGAGG+AGG 0.567027 2_1:+16293135 None:intergenic
ACGGATCTGATCGGAGATGG+AGG 0.567473 2_1:+16293084 None:intergenic
TTGACGGATCTGATCGGAGA+TGG 0.567532 2_1:+16293081 None:intergenic
TGTGAAGCGGGCTTCTGAGA+GGG 0.568121 2_1:-16291364 Msa0197940:CDS
AGCGGAAATGCAGGAAATTG+GGG 0.572270 2_1:+16288979 None:intergenic
ACTGATTCTCTTCAGACTCT+GGG 0.573743 2_1:+16291547 None:intergenic
GAGTATCCAATGCTTAAGGC+AGG 0.575297 2_1:-16291810 Msa0197940:CDS
ATATTTAAGTAAATGTCAGA+AGG 0.575750 2_1:-16288890 Msa0197940:three_prime_UTR
TATCTGTTTGAGTCAGTAGC+CGG 0.575956 2_1:-16291390 Msa0197940:CDS
ATGAGAATAACAGTAAATCT+CGG 0.576138 2_1:+16289082 None:intergenic
AGAACAAGACAGGGTTGAGG+AGG 0.576975 2_1:-16290608 Msa0197940:CDS
ATTATACCGCAGATTTGTCA+GGG 0.577085 2_1:-16292212 Msa0197940:CDS
TCGCACTAAATATATCAGGC+TGG 0.577096 2_1:+16290806 None:intergenic
GGATTGTGCGATATATTTGG+TGG 0.577400 2_1:-16291946 Msa0197940:CDS
TTCAGCGACGAGACGGAGGA+CGG 0.581545 2_1:+16293108 None:intergenic
TATCAAAAGAAGTAGCATTG+AGG 0.583401 2_1:-16291752 Msa0197940:CDS
ATCGCACATTCACCATGGAA+TGG 0.583806 2_1:-16293255 Msa0197940:exon
AGAAGCCCGCTTCACAAGAC+CGG 0.584077 2_1:+16291371 None:intergenic
AATCACTGCCATTTGCTCAA+AGG 0.584363 2_1:+16288941 None:intergenic
ATCATATTGAGTATATTAGG+AGG 0.584593 2_1:-16292133 Msa0197940:CDS
AATTTCTGTGACTCGAAAAG+CGG 0.584834 2_1:+16292602 None:intergenic
GAAGCGAGGGCCATGATTTG+GGG 0.585140 2_1:+16292879 None:intergenic
GACAGTATTATTTCAAGCCG+AGG 0.585780 2_1:+16291303 None:intergenic
AGTGAGTGTGAAATATATAA+CGG 0.586562 2_1:+16293326 None:intergenic
TTTGGTTCGTTTCCTTGCTG+CGG 0.587294 2_1:-16291718 Msa0197940:CDS
CGCGTCGTTGATTGACGCTG+CGG 0.589913 2_1:-16292663 Msa0197940:CDS
GAGGATTCGGCGTGGCGGCG+GGG 0.590284 2_1:+16293169 None:intergenic
CGACGAGACGGAGGACGGCG+AGG 0.590663 2_1:+16293113 None:intergenic
GAGGTTGAGGGAGGATGATG+AGG 0.591211 2_1:-16292171 Msa0197940:CDS
TGCATCCTGGGGTAAAATGG+TGG 0.591851 2_1:-16290659 Msa0197940:CDS
TAATTGCCGTAACCGCAAGC+TGG 0.592087 2_1:+16292291 None:intergenic
TCAGCACTCCCCTCAAGAGA+AGG 0.592983 2_1:+16292470 None:intergenic
AGGCCTGGAGTAGACGCACA+AGG 0.593702 2_1:+16291130 None:intergenic
GGGATCATTAATATCTGGAA+GGG 0.594843 2_1:+16290498 None:intergenic
AAACTGACTAAAATTAAACA+TGG 0.595245 2_1:+16288851 None:intergenic
AAACAGATAATGGTTGAAGG+TGG 0.595794 2_1:+16291404 None:intergenic
AACTTACTCAAACTAATGCT+CGG 0.596616 2_1:+16290347 None:intergenic
TGACTTGAGGGAACCTCCCA+GGG 0.597802 2_1:+16290431 None:intergenic
GTATACTCGAAAGTAGGCAG+AGG 0.598469 2_1:+16289184 None:intergenic
AACAAGTTCCGGAAGAAGCG+AGG 0.599510 2_1:+16292865 None:intergenic
GGAGAGGAGAGAGAGTGTGG+AGG 0.600742 2_1:+16293197 None:intergenic
AAATGCAGGAAATTGGGGAA+AGG 0.601789 2_1:+16288984 None:intergenic
TGGAGGGTTCAGCGACGAGA+CGG 0.603655 2_1:+16293101 None:intergenic
GGATCATTAATATCTGGAAG+GGG 0.603768 2_1:+16290499 None:intergenic
AAGCTCCTTTAATGCAAACC+CGG 0.603899 2_1:-16291988 Msa0197940:CDS
ACAAGTTCCGGAAGAAGCGA+GGG 0.604193 2_1:+16292866 None:intergenic
CGGATCTGATCGGAGATGGA+GGG 0.605850 2_1:+16293085 None:intergenic
TGCAGGAAATTGGGGAAAGG+GGG 0.607711 2_1:+16288987 None:intergenic
TTAGAGAGCTCCAGAGAAGG+CGG 0.607962 2_1:-16290921 Msa0197940:CDS
TTCTCGGCAAGAACAAGACA+GGG 0.608184 2_1:-16290617 Msa0197940:CDS
TCATATTGAGTATATTAGGA+GGG 0.608345 2_1:-16292132 Msa0197940:CDS
GCACCAAATGAGATCAGCCA+AGG 0.608644 2_1:-16291096 Msa0197940:CDS
AGCGGCTTGACGGATCTGAT+CGG 0.609749 2_1:+16293075 None:intergenic
TATATTAGGAGGGATATGGA+AGG 0.611021 2_1:-16292122 Msa0197940:CDS
CCCTAATCGCACATTCACCA+TGG 0.613496 2_1:-16293260 Msa0197940:exon
TTGGTGGCGGAGAGCATGAG+AGG 0.615233 2_1:+16292956 None:intergenic
AAAACCACCTCCGTCTCCGT+TGG 0.615604 2_1:-16293039 Msa0197940:CDS
TTGTGAAGCGGGCTTCTGAG+AGG 0.615980 2_1:-16291365 Msa0197940:CDS
TGTTGCTCGAATTTGCATTG+AGG 0.616016 2_1:-16291472 Msa0197940:CDS
ACTAAATATATCAGGCTGGA+CGG 0.616909 2_1:+16290810 None:intergenic
CTAGTTATCCTTCTCTTGAG+GGG 0.618255 2_1:-16292478 Msa0197940:CDS
ACTCTTAATAGTAAAGGACG+AGG 0.618274 2_1:-16291652 Msa0197940:CDS
GTGATCTTGATACAAGGAGG+AGG 0.620319 2_1:-16292097 Msa0197940:CDS
GATTCCGAATGTGAGGTTGA+GGG 0.620733 2_1:-16292183 Msa0197940:CDS
ACAGTATTATTTCAAGCCGA+GGG 0.621118 2_1:+16291304 None:intergenic
CAAGTAACTGAAATGCGTAT+GGG 0.621742 2_1:+16291259 None:intergenic
CTTCAGCGGACCAACGGAGA+CGG 0.622307 2_1:+16293029 None:intergenic
CACCAAATGAGATCAGCCAA+GGG 0.623350 2_1:-16291095 Msa0197940:CDS
ATTGTAAAGTTGGACGAAGG+TGG 0.623656 2_1:+16290543 None:intergenic
ATATCTGCATGTAGATTGGT+GGG 0.627188 2_1:+16291205 None:intergenic
TTGAACATCAACAAGATCTG+TGG 0.627448 2_1:+16291884 None:intergenic
TATTTAAGTAAATGTCAGAA+GGG 0.628117 2_1:-16288889 Msa0197940:three_prime_UTR
GAGGATTGGGTTATCTTCAG+CGG 0.631308 2_1:+16293015 None:intergenic
TTTGTGCACAGTTCCCTGGG+AGG 0.632283 2_1:-16290444 Msa0197940:CDS
TCCAACTTTACAATGCTGGA+AGG 0.632984 2_1:-16290534 Msa0197940:CDS
AAACCCGGTGGCGAATTGGA+AGG 0.633015 2_1:-16291973 Msa0197940:CDS
CCTGCAGCTTCTGCATCCTG+GGG 0.635126 2_1:-16290670 Msa0197940:CDS
AGGCATGCATGCTCAACAAG+CGG 0.635282 2_1:+16288961 None:intergenic
AAGGTAGTGATCTTGATACA+AGG 0.638914 2_1:-16292103 Msa0197940:CDS
GTGATTCCCGATGATAGCTA+GGG 0.638935 2_1:+16292907 None:intergenic
CAGCGGACCAACGGAGACGG+AGG 0.640762 2_1:+16293032 None:intergenic
ACCGCATAAAATCACGACAC+TGG 0.642109 2_1:+16289111 None:intergenic
GGGGATCATTAATATCTGGA+AGG 0.642825 2_1:+16290497 None:intergenic
GACTAGTCGTGACCAGCTTG+CGG 0.643562 2_1:-16292303 Msa0197940:CDS
AAGATTCGGAATCCAGAACT+GGG 0.643798 2_1:+16290777 None:intergenic
TTGCTCGAATTTGCATTGAG+GGG 0.644156 2_1:-16291470 Msa0197940:CDS
GCAAGAACAAGACAGGGTTG+AGG 0.647585 2_1:-16290611 Msa0197940:CDS
CAACATTTGACTCCGCAGCA+AGG 0.650912 2_1:+16291706 None:intergenic
GGCCTGGAGTAGACGCACAA+GGG 0.654528 2_1:+16291131 None:intergenic
TTATATGGAGAAGAATGAGG+AGG 0.657740 2_1:-16292393 Msa0197940:CDS
TGAATATCAAGAGAGACTTG+AGG 0.658051 2_1:+16290887 None:intergenic
GATCATATGAATGAATGGAT+GGG 0.659145 2_1:-16292524 Msa0197940:CDS
AATCTGCGGTATAATCCCAT+CGG 0.662771 2_1:+16292220 None:intergenic
AGCATTGTAAAGTTGGACGA+AGG 0.671018 2_1:+16290540 None:intergenic
AGGGTTCAGCGACGAGACGG+AGG 0.675337 2_1:+16293104 None:intergenic
AGAGAGAGGATTCGGCGTGG+CGG 0.684559 2_1:+16293164 None:intergenic
TTATACCGCAGATTTGTCAG+GGG 0.685030 2_1:-16292211 Msa0197940:CDS
TGTGGAGGAAGCATTCGGAG+AGG 0.686501 2_1:+16293212 None:intergenic
TTAATAGTAAAGGACGAGGG+TGG 0.686705 2_1:-16291648 Msa0197940:CDS
GGATTGTGATTCCGAATGTG+AGG 0.687428 2_1:-16292190 Msa0197940:CDS
AGCGGTTTAAGAGTTTCCAG+TGG 0.688575 2_1:+16292620 None:intergenic
CTCCTTTAATGCAAACCCGG+TGG 0.691872 2_1:-16291985 Msa0197940:CDS
CGCAGCGTCAATCAACGACG+CGG 0.696713 2_1:+16292664 None:intergenic
TCCGAATGTGAGGTTGAGGG+AGG 0.708339 2_1:-16292180 Msa0197940:CDS
GATCATTAATATCTGGAAGG+GGG 0.710644 2_1:+16290500 None:intergenic
ACAATCCCCTGACAAATCTG+CGG 0.710797 2_1:+16292206 None:intergenic
GTAGTGATCTTGATACAAGG+AGG 0.711592 2_1:-16292100 Msa0197940:CDS
CTCTTAATAGTAAAGGACGA+GGG 0.713370 2_1:-16291651 Msa0197940:CDS
ACCAAATGAGATCAGCCAAG+GGG 0.717940 2_1:-16291094 Msa0197940:CDS
GGTGGCGAATTGGAAGGACA+AGG 0.722542 2_1:-16291967 Msa0197940:CDS
AGGAGAGAGAGGATTCGGCG+TGG 0.725402 2_1:+16293161 None:intergenic
GAGGGCGAAGTTAGGTTGGG+AGG 0.730306 2_1:+16293132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTTATTTGATTATTA+TGG - chr2_1:16292222-16292241 Msa0197940:CDS 10.0%
!!! TTAAAAATATTGTTGTTATA+TGG - chr2_1:16293258-16293277 Msa0197940:exon 10.0%
!!! TAAAAATATTGTTGTTATAT+GGG - chr2_1:16293259-16293278 Msa0197940:exon 10.0%
!! TGAGAATATTAATCTTTATA+TGG - chr2_1:16289680-16289699 Msa0197940:intron 15.0%
!! TGTATCTCAAAATATATTAA+GGG + chr2_1:16291838-16291857 None:intergenic 15.0%
!! ATGTATCTCAAAATATATTA+AGG + chr2_1:16291839-16291858 None:intergenic 15.0%
!! AGATATAAATAGACAAAAAA+GGG + chr2_1:16292061-16292080 None:intergenic 15.0%
!! TGAAATTATATAAAGATTGA+TGG + chr2_1:16292468-16292487 None:intergenic 15.0%
!!! AAAAAAATCATGTTACTTTT+AGG - chr2_1:16292750-16292769 Msa0197940:CDS 15.0%
!!! TTTAGTGTAAATTTTTTTCA+TGG - chr2_1:16293078-16293097 Msa0197940:CDS 15.0%
!! TGAATCATATTGAGTATATT+AGG - chr2_1:16289952-16289971 Msa0197940:intron 20.0%
!! ATGTTATGAAATGTATTATG+AGG - chr2_1:16290564-16290583 Msa0197940:CDS 20.0%
!! TGTTATGAAATGTATTATGA+GGG - chr2_1:16290565-16290584 Msa0197940:CDS 20.0%
!! AATATATTAAGGGTAGATTA+AGG + chr2_1:16291828-16291847 None:intergenic 20.0%
!! GTAATATTTATCTGCTTTAT+TGG - chr2_1:16291995-16292014 Msa0197940:CDS 20.0%
!! CAGATATAAATAGACAAAAA+AGG + chr2_1:16292062-16292081 None:intergenic 20.0%
!!! TTTCCATGTTTCATTTTATA+TGG - chr2_1:16292177-16292196 Msa0197940:CDS 20.0%
!!! TTCCATGTTTCATTTTATAT+GGG - chr2_1:16292178-16292197 Msa0197940:CDS 20.0%
!! CTAAATTGAAATATTGTGAA+AGG - chr2_1:16292279-16292298 Msa0197940:CDS 20.0%
!! AATTTAAATACTAAACATCC+AGG + chr2_1:16292397-16292416 None:intergenic 20.0%
!! CAATCTTTATATAATTTCAC+CGG - chr2_1:16292469-16292488 Msa0197940:CDS 20.0%
!! ATATTTAAGTAAATGTCAGA+AGG - chr2_1:16293198-16293217 Msa0197940:CDS 20.0%
!! TATTTAAGTAAATGTCAGAA+GGG - chr2_1:16293199-16293218 Msa0197940:CDS 20.0%
!! AAACTGACTAAAATTAAACA+TGG + chr2_1:16293240-16293259 None:intergenic 20.0%
!!! ATAATGAATTTTTTAAGCGA+AGG + chr2_1:16293300-16293319 None:intergenic 20.0%
!!! AACAAATTTTGAGAAAAATG+TGG + chr2_1:16293333-16293352 None:intergenic 20.0%
! AGTGAGTGTGAAATATATAA+CGG + chr2_1:16288765-16288784 None:intergenic 25.0%
! TTTCTTAAAAATCGAATTCG+CGG + chr2_1:16289310-16289329 None:intergenic 25.0%
! ATCATATTGAGTATATTAGG+AGG - chr2_1:16289955-16289974 Msa0197940:intron 25.0%
! TCATATTGAGTATATTAGGA+GGG - chr2_1:16289956-16289975 Msa0197940:intron 25.0%
!!! CTTCTTTTGATATTTGAGAT+CGG + chr2_1:16290328-16290347 None:intergenic 25.0%
! TGAGAAACTCTTAATAGTAA+AGG - chr2_1:16290430-16290449 Msa0197940:CDS 25.0%
! GAAAAATTCAGTTACATCAT+TGG + chr2_1:16290810-16290829 None:intergenic 25.0%
! AAAATCGCACTAAATATATC+AGG + chr2_1:16291289-16291308 None:intergenic 25.0%
! ATGAAGAAACAAAAAATTCC+CGG + chr2_1:16291615-16291634 None:intergenic 25.0%
!!! GGAATTTTTTGTTTCTTCAT+TGG - chr2_1:16291615-16291634 Msa0197940:CDS 25.0%
! ATACAGAATAAAATAGCAAC+TGG + chr2_1:16291884-16291903 None:intergenic 25.0%
! ACGATATATAAAAGCTTGAT+TGG + chr2_1:16291933-16291952 None:intergenic 25.0%
!! TCCATGTTTCATTTTATATG+GGG - chr2_1:16292179-16292198 Msa0197940:CDS 25.0%
! AATACATGATTACAGTGATA+CGG + chr2_1:16292306-16292325 None:intergenic 25.0%
! CACATATACAAGCTATTTAT+TGG + chr2_1:16292517-16292536 None:intergenic 25.0%
!!! TATGTGATTGAGTTTTTTCT+TGG - chr2_1:16292531-16292550 Msa0197940:CDS 25.0%
! GAGAAAGATAATAAACTGTT+TGG - chr2_1:16292562-16292581 Msa0197940:CDS 25.0%
!!! AGGCATTTATTTTAATTCTC+AGG - chr2_1:16292808-16292827 Msa0197940:CDS 25.0%
! ATGAGAATAACAGTAAATCT+CGG + chr2_1:16293009-16293028 None:intergenic 25.0%
!! ATTCTCATTTTGAATTCTGT+AGG - chr2_1:16293021-16293040 Msa0197940:CDS 25.0%
! AGAAGTTTGGGTTTGAAAAA+TGG + chr2_1:16288788-16288807 None:intergenic 30.0%
TGAGAAGAAAAGAGAAGTTT+GGG + chr2_1:16288800-16288819 None:intergenic 30.0%
TTGAGAAGAAAAGAGAAGTT+TGG + chr2_1:16288801-16288820 None:intergenic 30.0%
!!! GGTTTTGATTTGTTCCTTTT+CGG + chr2_1:16289103-16289122 None:intergenic 30.0%
!! GCTTGATTTGAAGTATTGTT+TGG - chr2_1:16289362-16289381 Msa0197940:intron 30.0%
TTGAGAAAAATCTCAAGCAA+AGG + chr2_1:16289402-16289421 None:intergenic 30.0%
ATATGATCCTCAAAAAACTC+AGG + chr2_1:16289552-16289571 None:intergenic 30.0%
TTGAGGATCATATGAATGAA+TGG - chr2_1:16289559-16289578 Msa0197940:intron 30.0%
GATCATATGAATGAATGGAT+GGG - chr2_1:16289564-16289583 Msa0197940:intron 30.0%
TCTTTATATGGAGAAGAATG+AGG - chr2_1:16289692-16289711 Msa0197940:intron 30.0%
!! TGTTCATCATAGTTTGTTTG+CGG - chr2_1:16289845-16289864 Msa0197940:intron 30.0%
TATCAAAAGAAGTAGCATTG+AGG - chr2_1:16290336-16290355 Msa0197940:intron 30.0%
! ATTGAGGTTTTTACCTGATT+TGG - chr2_1:16290352-16290371 Msa0197940:intron 30.0%
AAATGTATTATGAGGGTTCT+TGG - chr2_1:16290572-16290591 Msa0197940:CDS 30.0%
TCAAATATCTGCATGTAGAT+TGG + chr2_1:16290890-16290909 None:intergenic 30.0%
TGAAGAAACAAAAAATTCCC+GGG + chr2_1:16291614-16291633 None:intergenic 30.0%
AACTTACTCAAACTAATGCT+CGG + chr2_1:16291744-16291763 None:intergenic 30.0%
!! TCTGTTTTGAATGTGCTTAT+TGG - chr2_1:16291783-16291802 Msa0197940:CDS 30.0%
! TGTATTCATCTCAGTTCTTT+TGG - chr2_1:16291899-16291918 Msa0197940:CDS 30.0%
TGCACTAAAATTTGCAAGAA+CGG - chr2_1:16292104-16292123 Msa0197940:CDS 30.0%
TCCCCATATAAAATGAAACA+TGG + chr2_1:16292183-16292202 None:intergenic 30.0%
TGGATTTCTCATTGAACTTA+AGG - chr2_1:16292242-16292261 Msa0197940:CDS 30.0%
!!! TGATTGAGTTTTTTCTTGGT+TGG - chr2_1:16292535-16292554 Msa0197940:CDS 30.0%
! TTCATCTTTCTCCTTTTGTT+TGG - chr2_1:16292612-16292631 Msa0197940:CDS 30.0%
AGACTTATATATGCTTCTGA+AGG - chr2_1:16292676-16292695 Msa0197940:CDS 30.0%
GACTTATATATGCTTCTGAA+GGG - chr2_1:16292677-16292696 Msa0197940:CDS 30.0%
TAAACATGTGATCTCTAATC+AGG - chr2_1:16292788-16292807 Msa0197940:CDS 30.0%
TAAAATCCCAATAGACCAAA+TGG + chr2_1:16293062-16293081 None:intergenic 30.0%
TTGAGAAAAATGTGGATTTG+AGG + chr2_1:16293325-16293344 None:intergenic 30.0%
!! CTTGTTGCTAGTCTTCAAAA+AGG - chr2_1:16289240-16289259 Msa0197940:three_prime_UTR 35.0%
! ACCATTGATTGAAGCGTAAT+CGG + chr2_1:16289277-16289296 None:intergenic 35.0%
AATTTCTGTGACTCGAAAAG+CGG + chr2_1:16289489-16289508 None:intergenic 35.0%
AGTCACAGAAATTGTGTTGT+AGG - chr2_1:16289496-16289515 Msa0197940:intron 35.0%
GGATCATATGAATGAATGGA+TGG - chr2_1:16289563-16289582 Msa0197940:intron 35.0%
TACTAGTTATCCTTCTCTTG+AGG - chr2_1:16289608-16289627 Msa0197940:intron 35.0%
ACTAGTTATCCTTCTCTTGA+GGG - chr2_1:16289609-16289628 Msa0197940:intron 35.0%
TTATATGGAGAAGAATGAGG+AGG - chr2_1:16289695-16289714 Msa0197940:intron 35.0%
! GGCAATTAAGTTTTTGACGA+CGG - chr2_1:16289812-16289831 Msa0197940:intron 35.0%
ATTATACCGCAGATTTGTCA+GGG - chr2_1:16289876-16289895 Msa0197940:intron 35.0%
TGAGTATATTAGGAGGGATA+TGG - chr2_1:16289962-16289981 Msa0197940:intron 35.0%
TATATTAGGAGGGATATGGA+AGG - chr2_1:16289966-16289985 Msa0197940:intron 35.0%
AAGGTAGTGATCTTGATACA+AGG - chr2_1:16289985-16290004 Msa0197940:intron 35.0%
ATTGCTTGTGAGTTGCTTAA+GGG - chr2_1:16290014-16290033 Msa0197940:intron 35.0%
CAAGGATTGTGCGATATATT+TGG - chr2_1:16290139-16290158 Msa0197940:intron 35.0%
TTGAACATCAACAAGATCTG+TGG + chr2_1:16290207-16290226 None:intergenic 35.0%
GAATGAGTATCCAATGCTTA+AGG - chr2_1:16290274-16290293 Msa0197940:intron 35.0%
ACTCTTAATAGTAAAGGACG+AGG - chr2_1:16290436-16290455 Msa0197940:CDS 35.0%
CTCTTAATAGTAAAGGACGA+GGG - chr2_1:16290437-16290456 Msa0197940:CDS 35.0%
! TTCATCAGCATTGAGAAAAC+TGG + chr2_1:16290497-16290516 None:intergenic 35.0%
! AACAGATAATGGTTGAAGGT+GGG + chr2_1:16290686-16290705 None:intergenic 35.0%
! AAACAGATAATGGTTGAAGG+TGG + chr2_1:16290687-16290706 None:intergenic 35.0%
! CTCAAACAGATAATGGTTGA+AGG + chr2_1:16290690-16290709 None:intergenic 35.0%
!! CTACTGACTCAAACAGATAA+TGG + chr2_1:16290697-16290716 None:intergenic 35.0%
CAAAAACAGACACAAGAGTT+GGG + chr2_1:16290751-16290770 None:intergenic 35.0%
TCAAAAACAGACACAAGAGT+TGG + chr2_1:16290752-16290771 None:intergenic 35.0%
ACAGTATTATTTCAAGCCGA+GGG + chr2_1:16290787-16290806 None:intergenic 35.0%
CAAGTAACTGAAATGCGTAT+GGG + chr2_1:16290832-16290851 None:intergenic 35.0%
ATATCTGCATGTAGATTGGT+GGG + chr2_1:16290886-16290905 None:intergenic 35.0%
AATATCTGCATGTAGATTGG+TGG + chr2_1:16290887-16290906 None:intergenic 35.0%
! TTCTTTTGTCACCTGATTCT+TGG - chr2_1:16290912-16290931 Msa0197940:CDS 35.0%
GTCAAATATGCCAAGTACTT+TGG + chr2_1:16291029-16291048 None:intergenic 35.0%
GCCTTATGTTTCTCACATTT+GGG - chr2_1:16291135-16291154 Msa0197940:CDS 35.0%
TGAATATCAAGAGAGACTTG+AGG + chr2_1:16291204-16291223 None:intergenic 35.0%
GATATTCAGTTCACTGTTTC+TGG - chr2_1:16291216-16291235 Msa0197940:CDS 35.0%
ACTAAATATATCAGGCTGGA+CGG + chr2_1:16291281-16291300 None:intergenic 35.0%
CCAGTAATCAGCTTAAGATT+CGG + chr2_1:16291328-16291347 None:intergenic 35.0%
GTATTGTGACACTTCTTTCT+CGG - chr2_1:16291455-16291474 Msa0197940:CDS 35.0%
! CCTACATTTTCTGCAATATC+TGG + chr2_1:16291517-16291536 None:intergenic 35.0%
CCAGATATTGCAGAAAATGT+AGG - chr2_1:16291514-16291533 Msa0197940:CDS 35.0%
GATCATTAATATCTGGAAGG+GGG + chr2_1:16291591-16291610 None:intergenic 35.0%
GGATCATTAATATCTGGAAG+GGG + chr2_1:16291592-16291611 None:intergenic 35.0%
GGGATCATTAATATCTGGAA+GGG + chr2_1:16291593-16291612 None:intergenic 35.0%
TTCCAGATATTAATGATCCC+CGG - chr2_1:16291593-16291612 Msa0197940:CDS 35.0%
GAAGAAACAAAAAATTCCCG+GGG + chr2_1:16291613-16291632 None:intergenic 35.0%
! GAGCATTAGTTTGAGTAAGT+TGG - chr2_1:16291743-16291762 Msa0197940:CDS 35.0%
GGTAGATTAAGGAAAAGTCA+TGG + chr2_1:16291817-16291836 None:intergenic 35.0%
CAAAATACCCACAGCTAAAA+GGG + chr2_1:16291959-16291978 None:intergenic 35.0%
! TTTATTGGTAGCAACTAGCA+AGG - chr2_1:16292010-16292029 Msa0197940:CDS 35.0%
! TTATTGGTAGCAACTAGCAA+GGG - chr2_1:16292011-16292030 Msa0197940:CDS 35.0%
! TATGTCTCTTTTGTTCCTCT+TGG - chr2_1:16292138-16292157 Msa0197940:CDS 35.0%
!! TTTTGTTCCTCTTGGTTTGA+TGG - chr2_1:16292146-16292165 Msa0197940:CDS 35.0%
ACACTATGGAAGTCAATGAT+GGG + chr2_1:16292344-16292363 None:intergenic 35.0%
CGCAAAATGAATTCACACTA+TGG + chr2_1:16292358-16292377 None:intergenic 35.0%
!!! TTGAGTTTTTTCTTGGTTGG+AGG - chr2_1:16292538-16292557 Msa0197940:CDS 35.0%
!! ATCTTTCTCCTTTTGTTTGG+TGG - chr2_1:16292615-16292634 Msa0197940:CDS 35.0%
!! TCTTTCTCCTTTTGTTTGGT+GGG - chr2_1:16292616-16292635 Msa0197940:CDS 35.0%
AACCACTCAAATGTTGCAAA+AGG + chr2_1:16292878-16292897 None:intergenic 35.0%
!! AGTTTGTTGGTTCCATTCCA+TGG + chr2_1:16288848-16288867 None:intergenic 40.0%
AGAGGAATTGGAGAGTTTGT+TGG + chr2_1:16288861-16288880 None:intergenic 40.0%
!!! GAGGTGGTTTTTGAAGTTGA+CGG + chr2_1:16289040-16289059 None:intergenic 40.0%
! TTTGTTCCTTTTCGGAATCG+AGG + chr2_1:16289095-16289114 None:intergenic 40.0%
!! AGATTGGATTTTGTTGGTGG+CGG + chr2_1:16289148-16289167 None:intergenic 40.0%
! CTGAGATTGGATTTTGTTGG+TGG + chr2_1:16289151-16289170 None:intergenic 40.0%
! GAGCTGAGATTGGATTTTGT+TGG + chr2_1:16289154-16289173 None:intergenic 40.0%
ATCACGATTTCCCCAAATCA+TGG - chr2_1:16289199-16289218 Msa0197940:three_prime_UTR 40.0%
TGAAGACTAGCAACAAGTTC+CGG + chr2_1:16289237-16289256 None:intergenic 40.0%
TCCGATTACGCTTCAATCAA+TGG - chr2_1:16289273-16289292 Msa0197940:intron 40.0%
TTTAAGAGTTTCCAGTGGTG+GGG + chr2_1:16289466-16289485 None:intergenic 40.0%
GTTTAAGAGTTTCCAGTGGT+GGG + chr2_1:16289467-16289486 None:intergenic 40.0%
!!! AGAGTTGCCTGAGTTTTTTG+AGG - chr2_1:16289542-16289561 Msa0197940:intron 40.0%
ATGAATGGATGGGTGAGTTT+AGG - chr2_1:16289574-16289593 Msa0197940:intron 40.0%
CTAGTTATCCTTCTCTTGAG+GGG - chr2_1:16289610-16289629 Msa0197940:intron 40.0%
GAAGAATGAGGAGGAGTTTA+AGG - chr2_1:16289704-16289723 Msa0197940:intron 40.0%
!!! ATGATTTTGCACTTGCTGTG+TGG - chr2_1:16289736-16289755 Msa0197940:intron 40.0%
TTGCTGTGTGGACTTTGTTA+GGG - chr2_1:16289748-16289767 Msa0197940:intron 40.0%
AATCTGCGGTATAATCCCAT+CGG + chr2_1:16289871-16289890 None:intergenic 40.0%
GATTATACCGCAGATTTGTC+AGG - chr2_1:16289875-16289894 Msa0197940:intron 40.0%
TTATACCGCAGATTTGTCAG+GGG - chr2_1:16289877-16289896 Msa0197940:intron 40.0%
GTAGTGATCTTGATACAAGG+AGG - chr2_1:16289988-16290007 Msa0197940:intron 40.0%
GATTGCTTGTGAGTTGCTTA+AGG - chr2_1:16290013-16290032 Msa0197940:intron 40.0%
TTGCTTGTGAGTTGCTTAAG+GGG - chr2_1:16290015-16290034 Msa0197940:intron 40.0%
AAGCTCCTTTAATGCAAACC+CGG - chr2_1:16290100-16290119 Msa0197940:intron 40.0%
GGATTGTGCGATATATTTGG+TGG - chr2_1:16290142-16290161 Msa0197940:intron 40.0%
GGTCTCTCTTTCTACAAAGA+AGG - chr2_1:16290163-16290182 Msa0197940:intron 40.0%
AAGATCTGTGGAGACATAAC+CGG + chr2_1:16290195-16290214 None:intergenic 40.0%
!!! CATCTGCTTTTTGCAACTCA+GGG + chr2_1:16290253-16290272 None:intergenic 40.0%
!!! ACATCTGCTTTTTGCAACTC+AGG + chr2_1:16290254-16290273 None:intergenic 40.0%
TTAATAGTAAAGGACGAGGG+TGG - chr2_1:16290440-16290459 Msa0197940:CDS 40.0%
! ACTGATTCTCTTCAGACTCT+GGG + chr2_1:16290544-16290563 None:intergenic 40.0%
!! TACTGATTCTCTTCAGACTC+TGG + chr2_1:16290545-16290564 None:intergenic 40.0%
TGTTGCTCGAATTTGCATTG+AGG - chr2_1:16290616-16290635 Msa0197940:CDS 40.0%
GTTGCTCGAATTTGCATTGA+GGG - chr2_1:16290617-16290636 Msa0197940:CDS 40.0%
TTGCTCGAATTTGCATTGAG+GGG - chr2_1:16290618-16290637 Msa0197940:CDS 40.0%
! ACAGATAATGGTTGAAGGTG+GGG + chr2_1:16290685-16290704 None:intergenic 40.0%
TATCTGTTTGAGTCAGTAGC+CGG - chr2_1:16290698-16290717 Msa0197940:CDS 40.0%
! TTGAAACAAGCCTTTTCCCT+CGG - chr2_1:16290768-16290787 Msa0197940:CDS 40.0%
TTATTTCAAGCCGAGGGAAA+AGG + chr2_1:16290781-16290800 None:intergenic 40.0%
GACAGTATTATTTCAAGCCG+AGG + chr2_1:16290788-16290807 None:intergenic 40.0%
GCAAGTAACTGAAATGCGTA+TGG + chr2_1:16290833-16290852 None:intergenic 40.0%
!!! ATTTGGTGCCTTTTGAAGGA+AGG + chr2_1:16290981-16291000 None:intergenic 40.0%
!!! TCTCATTTGGTGCCTTTTGA+AGG + chr2_1:16290985-16291004 None:intergenic 40.0%
! GATAGACTGACCAAAGTACT+TGG - chr2_1:16291016-16291035 Msa0197940:CDS 40.0%
CGCCTTATGTTTCTCACATT+TGG - chr2_1:16291134-16291153 Msa0197940:CDS 40.0%
GCCCAAATGTGAGAAACATA+AGG + chr2_1:16291139-16291158 None:intergenic 40.0%
!! TTTTTAGAGAGCTCCAGAGA+AGG - chr2_1:16291164-16291183 Msa0197940:CDS 40.0%
!! TCACTGTTTCTGGTTAAGCA+TGG - chr2_1:16291226-16291245 Msa0197940:CDS 40.0%
TCGCACTAAATATATCAGGC+TGG + chr2_1:16291285-16291304 None:intergenic 40.0%
AAGATTCGGAATCCAGAACT+GGG + chr2_1:16291314-16291333 None:intergenic 40.0%
TAAGATTCGGAATCCAGAAC+TGG + chr2_1:16291315-16291334 None:intergenic 40.0%
CCGAATCTTAAGCTGATTAC+TGG - chr2_1:16291325-16291344 Msa0197940:CDS 40.0%
ATTGTAAAGTTGGACGAAGG+TGG + chr2_1:16291548-16291567 None:intergenic 40.0%
AGCATTGTAAAGTTGGACGA+AGG + chr2_1:16291551-16291570 None:intergenic 40.0%
TTCGTCCAACTTTACAATGC+TGG - chr2_1:16291550-16291569 Msa0197940:CDS 40.0%
TCCAACTTTACAATGCTGGA+AGG - chr2_1:16291554-16291573 Msa0197940:CDS 40.0%
TCCTTCCAGCATTGTAAAGT+TGG + chr2_1:16291558-16291577 None:intergenic 40.0%
GGGGATCATTAATATCTGGA+AGG + chr2_1:16291594-16291613 None:intergenic 40.0%
TCCAGATATTAATGATCCCC+GGG - chr2_1:16291594-16291613 Msa0197940:CDS 40.0%
CATTTGCAGTGATGACTTGA+GGG + chr2_1:16291672-16291691 None:intergenic 40.0%
ACATTTGCAGTGATGACTTG+AGG + chr2_1:16291673-16291692 None:intergenic 40.0%
AACTAATGCTCGGTTGTAAG+TGG + chr2_1:16291734-16291753 None:intergenic 40.0%
CCAAAATACCCACAGCTAAA+AGG + chr2_1:16291960-16291979 None:intergenic 40.0%
!! CCTTTTAGCTGTGGGTATTT+TGG - chr2_1:16291957-16291976 Msa0197940:CDS 40.0%
GAGTATACCATCAAACCAAG+AGG + chr2_1:16292156-16292175 None:intergenic 40.0%
CACACTATGGAAGTCAATGA+TGG + chr2_1:16292345-16292364 None:intergenic 40.0%
CGAAAATACACAAACTAGCC+TGG - chr2_1:16292376-16292395 Msa0197940:CDS 40.0%
CTTACTACCCACCAAACAAA+AGG + chr2_1:16292626-16292645 None:intergenic 40.0%
TTCACTCCAAACATGAGAAG+AGG + chr2_1:16292731-16292750 None:intergenic 40.0%
TTAATTCTCAGGATCTGTGC+TGG - chr2_1:16292819-16292838 Msa0197940:CDS 40.0%
TAATTCTCAGGATCTGTGCT+GGG - chr2_1:16292820-16292839 Msa0197940:CDS 40.0%
TCAAATGTTGCAAAAGGCTG+AGG + chr2_1:16292872-16292891 None:intergenic 40.0%
! AGCCTTTTGCAACATTTGAG+TGG - chr2_1:16292873-16292892 Msa0197940:CDS 40.0%
! GCAGAAGTATACTCGAAAGT+AGG + chr2_1:16292913-16292932 None:intergenic 40.0%
ATCACGACACTGGCAAAAAT+TGG + chr2_1:16292970-16292989 None:intergenic 40.0%
! CATGTGTTTGAAGTGCCATT+TGG - chr2_1:16293044-16293063 Msa0197940:CDS 40.0%
!! TGAAGTGCCATTTGGTCTAT+TGG - chr2_1:16293052-16293071 Msa0197940:CDS 40.0%
!! GAAGTGCCATTTGGTCTATT+GGG - chr2_1:16293053-16293072 Msa0197940:CDS 40.0%
AATGCAGGAAATTGGGGAAA+GGG + chr2_1:16293106-16293125 None:intergenic 40.0%
AAATGCAGGAAATTGGGGAA+AGG + chr2_1:16293107-16293126 None:intergenic 40.0%
AAGCGGAAATGCAGGAAATT+GGG + chr2_1:16293113-16293132 None:intergenic 40.0%
! AATCACTGCCATTTGCTCAA+AGG + chr2_1:16293150-16293169 None:intergenic 40.0%
CCATGGTGAATGTGCGATTA+GGG + chr2_1:16288831-16288850 None:intergenic 45.0%
TCCATGGTGAATGTGCGATT+AGG + chr2_1:16288832-16288851 None:intergenic 45.0%
ATCGCACATTCACCATGGAA+TGG - chr2_1:16288833-16288852 Msa0197940:three_prime_UTR 45.0%
!!! GTTTTTGAAGTTGACGGCAG+CGG + chr2_1:16289034-16289053 None:intergenic 45.0%
GAGGATTGGGTTATCTTCAG+CGG + chr2_1:16289076-16289095 None:intergenic 45.0%
! CCTTTTCGGAATCGAGGATT+GGG + chr2_1:16289089-16289108 None:intergenic 45.0%
! TCCTTTTCGGAATCGAGGAT+TGG + chr2_1:16289090-16289109 None:intergenic 45.0%
! GAGCATGAGAGGTACGATTA+GGG + chr2_1:16289124-16289143 None:intergenic 45.0%
! AGAGCATGAGAGGTACGATT+AGG + chr2_1:16289125-16289144 None:intergenic 45.0%
GTGATTCCCGATGATAGCTA+GGG + chr2_1:16289184-16289203 None:intergenic 45.0%
TTAAGAGTTTCCAGTGGTGG+GGG + chr2_1:16289465-16289484 None:intergenic 45.0%
GGTTTAAGAGTTTCCAGTGG+TGG + chr2_1:16289468-16289487 None:intergenic 45.0%
AGCGGTTTAAGAGTTTCCAG+TGG + chr2_1:16289471-16289490 None:intergenic 45.0%
TTGCTCTTGTGGATGAGCTT+AGG - chr2_1:16289646-16289665 Msa0197940:intron 45.0%
TGCTCTTGTGGATGAGCTTA+GGG - chr2_1:16289647-16289666 Msa0197940:intron 45.0%
! CTTGCTGTGTGGACTTTGTT+AGG - chr2_1:16289747-16289766 Msa0197940:intron 45.0%
!! ATAGTTTGTTTGCGGCCGAT+GGG - chr2_1:16289853-16289872 Msa0197940:intron 45.0%
ACAATCCCCTGACAAATCTG+CGG + chr2_1:16289885-16289904 None:intergenic 45.0%
GGATTGTGATTCCGAATGTG+AGG - chr2_1:16289898-16289917 Msa0197940:intron 45.0%
TGATTCCGAATGTGAGGTTG+AGG - chr2_1:16289904-16289923 Msa0197940:intron 45.0%
GATTCCGAATGTGAGGTTGA+GGG - chr2_1:16289905-16289924 Msa0197940:intron 45.0%
GTGATCTTGATACAAGGAGG+AGG - chr2_1:16289991-16290010 Msa0197940:intron 45.0%
TCTACAAAGAAGGCTGCAAC+CGG - chr2_1:16290173-16290192 Msa0197940:intron 45.0%
GAGTATCCAATGCTTAAGGC+AGG - chr2_1:16290278-16290297 Msa0197940:intron 45.0%
GCAAGGAAACGAACCAAATC+AGG + chr2_1:16290368-16290387 None:intergenic 45.0%
! TTTGGTTCGTTTCCTTGCTG+CGG - chr2_1:16290370-16290389 Msa0197940:CDS 45.0%
! TTCAGACTCTGGGAGCTTAA+AGG + chr2_1:16290534-16290553 None:intergenic 45.0%
TCGAATTTGCATTGAGGGGT+TGG - chr2_1:16290622-16290641 Msa0197940:CDS 45.0%
CGAATTTGCATTGAGGGGTT+GGG - chr2_1:16290623-16290642 Msa0197940:CDS 45.0%
GAATTTGCATTGAGGGGTTG+GGG - chr2_1:16290624-16290643 Msa0197940:CDS 45.0%
!!! TGGTTGAAGGTGGGGTTTTT+TGG + chr2_1:16290677-16290696 None:intergenic 45.0%
TGCATGTAGATTGGTGGGAT+GGG + chr2_1:16290881-16290900 None:intergenic 45.0%
! GCGCTTCTTTTCCAAGAATC+AGG + chr2_1:16290926-16290945 None:intergenic 45.0%
CACCAAATGAGATCAGCCAA+GGG - chr2_1:16290993-16291012 Msa0197940:CDS 45.0%
ACCAAATGAGATCAGCCAAG+GGG - chr2_1:16290994-16291013 Msa0197940:CDS 45.0%
GCATCAAGCACTTCTGATCA+AGG - chr2_1:16291061-16291080 Msa0197940:CDS 45.0%
TGGAGACTCACAAATGAGTC+TGG + chr2_1:16291386-16291405 None:intergenic 45.0%
TTGTGAGTCTCCAGTACTTC+TGG - chr2_1:16291393-16291412 Msa0197940:CDS 45.0%
TTCTGCATCCTGGGGTAAAA+TGG - chr2_1:16291426-16291445 Msa0197940:CDS 45.0%
TTTCTCGGCAAGAACAAGAC+AGG - chr2_1:16291470-16291489 Msa0197940:CDS 45.0%
TTCTCGGCAAGAACAAGACA+GGG - chr2_1:16291471-16291490 Msa0197940:CDS 45.0%
TCTGCAATATCTGGCATGTC+AGG + chr2_1:16291508-16291527 None:intergenic 45.0%
TCCCGGGGATCATTAATATC+TGG + chr2_1:16291598-16291617 None:intergenic 45.0%
!! ATCGTTGACCCTTTTAGCTG+TGG - chr2_1:16291948-16291967 Msa0197940:CDS 45.0%
!! TCGTTGACCCTTTTAGCTGT+GGG - chr2_1:16291949-16291968 Msa0197940:CDS 45.0%
CAGAGAAACAACTATGCAGC+CGG + chr2_1:16292491-16292510 None:intergenic 45.0%
TACGCTCCTCTTCTCATGTT+TGG - chr2_1:16292722-16292741 Msa0197940:CDS 45.0%
TGGGATTGAGCATTACTGTC+TGG - chr2_1:16292844-16292863 Msa0197940:CDS 45.0%
GTATACTCGAAAGTAGGCAG+AGG + chr2_1:16292907-16292926 None:intergenic 45.0%
! GCCAGTGTCGTGATTTTATG+CGG - chr2_1:16292976-16292995 Msa0197940:CDS 45.0%
ACCGCATAAAATCACGACAC+TGG + chr2_1:16292980-16292999 None:intergenic 45.0%
ATGCAGGAAATTGGGGAAAG+GGG + chr2_1:16293105-16293124 None:intergenic 45.0%
AGCGGAAATGCAGGAAATTG+GGG + chr2_1:16293112-16293131 None:intergenic 45.0%
CAAGCGGAAATGCAGGAAAT+TGG + chr2_1:16293114-16293133 None:intergenic 45.0%
CATGCATGCCTTTGAGCAAA+TGG - chr2_1:16293139-16293158 Msa0197940:CDS 45.0%
CCCTAATCGCACATTCACCA+TGG - chr2_1:16288828-16288847 Msa0197940:three_prime_UTR 50.0%
!! GGAAGCATTCGGAGAGGAAT+TGG + chr2_1:16288873-16288892 None:intergenic 50.0%
!! GAGAGTGTGGAGGAAGCATT+CGG + chr2_1:16288884-16288903 None:intergenic 50.0%
! TTGACGGATCTGATCGGAGA+TGG + chr2_1:16289010-16289029 None:intergenic 50.0%
GGTTATCTTCAGCGGACCAA+CGG + chr2_1:16289068-16289087 None:intergenic 50.0%
CCCAATCCTCGATTCCGAAA+AGG - chr2_1:16289086-16289105 Msa0197940:three_prime_UTR 50.0%
TCCGAAGCCCTAGCTATCAT+CGG - chr2_1:16289174-16289193 Msa0197940:three_prime_UTR 50.0%
CGTGATTCCCGATGATAGCT+AGG + chr2_1:16289185-16289204 None:intergenic 50.0%
AGAAGCGAGGGCCATGATTT+GGG + chr2_1:16289213-16289232 None:intergenic 50.0%
AAGAAGCGAGGGCCATGATT+TGG + chr2_1:16289214-16289233 None:intergenic 50.0%
ACAAGTTCCGGAAGAAGCGA+GGG + chr2_1:16289225-16289244 None:intergenic 50.0%
AACAAGTTCCGGAAGAAGCG+AGG + chr2_1:16289226-16289245 None:intergenic 50.0%
! TGCTGATGGTCTTGCTCTTG+TGG - chr2_1:16289635-16289654 Msa0197940:intron 50.0%
TAATTGCCGTAACCGCAAGC+TGG + chr2_1:16289800-16289819 None:intergenic 50.0%
!! CATAGTTTGTTTGCGGCCGA+TGG - chr2_1:16289852-16289871 Msa0197940:intron 50.0%
TCCTCCCTCAACCTCACATT+CGG + chr2_1:16289912-16289931 None:intergenic 50.0%
AAGGGGATTGCTACGCGTTA+TGG - chr2_1:16290032-16290051 Msa0197940:intron 50.0%
CTCCTTTAATGCAAACCCGG+TGG - chr2_1:16290103-16290122 Msa0197940:intron 50.0%
TTGTCCTTCCAATTCGCCAC+CGG + chr2_1:16290122-16290141 None:intergenic 50.0%
AGTGCACCTGCCTTAAGCAT+TGG + chr2_1:16290287-16290306 None:intergenic 50.0%
CAACATTTGACTCCGCAGCA+AGG + chr2_1:16290385-16290404 None:intergenic 50.0%
ATGTAGATTGGTGGGATGGG+TGG + chr2_1:16290878-16290897 None:intergenic 50.0%
CTGCATGTAGATTGGTGGGA+TGG + chr2_1:16290882-16290901 None:intergenic 50.0%
ACTCCAGGCCTTCCTTCAAA+AGG - chr2_1:16290970-16290989 Msa0197940:CDS 50.0%
GCACCAAATGAGATCAGCCA+AGG - chr2_1:16290992-16291011 Msa0197940:CDS 50.0%
TCCCCTTGGCTGATCTCATT+TGG + chr2_1:16290998-16291017 None:intergenic 50.0%
CTTTGGTCAGTCTATCCCCT+TGG + chr2_1:16291012-16291031 None:intergenic 50.0%
TTAGAGAGCTCCAGAGAAGG+CGG - chr2_1:16291167-16291186 Msa0197940:CDS 50.0%
!! GTGCGATTTTGACCCAGTTC+TGG - chr2_1:16291299-16291318 Msa0197940:CDS 50.0%
TGCATCCTGGGGTAAAATGG+TGG - chr2_1:16291429-16291448 Msa0197940:CDS 50.0%
! ACTGTCCACCATTTTACCCC+AGG + chr2_1:16291437-16291456 None:intergenic 50.0%
GCAAGAACAAGACAGGGTTG+AGG - chr2_1:16291477-16291496 Msa0197940:CDS 50.0%
AGAACAAGACAGGGTTGAGG+AGG - chr2_1:16291480-16291499 Msa0197940:CDS 50.0%
TATCTGGAAGGGGGTCTTCT+TGG + chr2_1:16291582-16291601 None:intergenic 50.0%
AGGGAACTGTGCACAAAGCT+GGG + chr2_1:16291641-16291660 None:intergenic 50.0%
! AGCTTTGTGCACAGTTCCCT+GGG - chr2_1:16291641-16291660 Msa0197940:CDS 50.0%
AGCAACGCTGTCTGATTCAC+AGG + chr2_1:16291700-16291719 None:intergenic 50.0%
TGCAGGAAATTGGGGAAAGG+GGG + chr2_1:16293104-16293123 None:intergenic 50.0%
TGCTCAACAAGCGGAAATGC+AGG + chr2_1:16293121-16293140 None:intergenic 50.0%
AGGCATGCATGCTCAACAAG+CGG + chr2_1:16293130-16293149 None:intergenic 50.0%
!! TGTGGAGGAAGCATTCGGAG+AGG + chr2_1:16288879-16288898 None:intergenic 55.0%
!! GAAGTTAGGTTGGGAGGAGG+CGG + chr2_1:16288953-16288972 None:intergenic 55.0%
CGGATCTGATCGGAGATGGA+GGG + chr2_1:16289006-16289025 None:intergenic 55.0%
ACGGATCTGATCGGAGATGG+AGG + chr2_1:16289007-16289026 None:intergenic 55.0%
! AGCGGCTTGACGGATCTGAT+CGG + chr2_1:16289016-16289035 None:intergenic 55.0%
AAAACCACCTCCGTCTCCGT+TGG - chr2_1:16289049-16289068 Msa0197940:three_prime_UTR 55.0%
CCCGATGATAGCTAGGGCTT+CGG + chr2_1:16289178-16289197 None:intergenic 55.0%
CCGAAGCCCTAGCTATCATC+GGG - chr2_1:16289175-16289194 Msa0197940:three_prime_UTR 55.0%
GAAGCGAGGGCCATGATTTG+GGG + chr2_1:16289212-16289231 None:intergenic 55.0%
ATCATGGCCCTCGCTTCTTC+CGG - chr2_1:16289215-16289234 Msa0197940:three_prime_UTR 55.0%
TCAGCACTCCCCTCAAGAGA+AGG + chr2_1:16289621-16289640 None:intergenic 55.0%
!! TCTCTTGAGGGGAGTGCTGA+TGG - chr2_1:16289621-16289640 Msa0197940:intron 55.0%
TGTGGATGAGCTTAGGGCTG+CGG - chr2_1:16289653-16289672 Msa0197940:intron 55.0%
! GACTAGTCGTGACCAGCTTG+CGG - chr2_1:16289785-16289804 Msa0197940:intron 55.0%
TCGTGACCAGCTTGCGGTTA+CGG - chr2_1:16289791-16289810 Msa0197940:intron 55.0%
TCCGAATGTGAGGTTGAGGG+AGG - chr2_1:16289908-16289927 Msa0197940:intron 55.0%
GAGGTTGAGGGAGGATGATG+AGG - chr2_1:16289917-16289936 Msa0197940:intron 55.0%
CGCCACCGGGTTTGCATTAA+AGG + chr2_1:16290108-16290127 None:intergenic 55.0%
ATGCAAACCCGGTGGCGAAT+TGG - chr2_1:16290111-16290130 Msa0197940:intron 55.0%
AAACCCGGTGGCGAATTGGA+AGG - chr2_1:16290115-16290134 Msa0197940:intron 55.0%
TGTCCTTCCAATTCGCCACC+GGG + chr2_1:16290121-16290140 None:intergenic 55.0%
GGTGGCGAATTGGAAGGACA+AGG - chr2_1:16290121-16290140 Msa0197940:intron 55.0%
TAGTAAAGGACGAGGGTGGC+AGG - chr2_1:16290444-16290463 Msa0197940:CDS 55.0%
! CAGTAGCCGGTCTTGTGAAG+CGG - chr2_1:16290711-16290730 Msa0197940:CDS 55.0%
! AGTAGCCGGTCTTGTGAAGC+GGG - chr2_1:16290712-16290731 Msa0197940:CDS 55.0%
AGAAGCCCGCTTCACAAGAC+CGG + chr2_1:16290720-16290739 None:intergenic 55.0%
! TTGTGAAGCGGGCTTCTGAG+AGG - chr2_1:16290723-16290742 Msa0197940:CDS 55.0%
! TGTGAAGCGGGCTTCTGAGA+GGG - chr2_1:16290724-16290743 Msa0197940:CDS 55.0%
!! GTGCCTTTTGAAGGAAGGCC+TGG + chr2_1:16290976-16290995 None:intergenic 55.0%
GCTTTACTGTCCGCCTTCTC+TGG + chr2_1:16291180-16291199 None:intergenic 55.0%
! GCTGCAGGATCCAGAAGTAC+TGG + chr2_1:16291406-16291425 None:intergenic 55.0%
ATCCTGCAGCTTCTGCATCC+TGG - chr2_1:16291416-16291435 Msa0197940:CDS 55.0%
TCCTGCAGCTTCTGCATCCT+GGG - chr2_1:16291417-16291436 Msa0197940:CDS 55.0%
CAGGGAACTGTGCACAAAGC+TGG + chr2_1:16291642-16291661 None:intergenic 55.0%
! CAGCTTTGTGCACAGTTCCC+TGG - chr2_1:16291640-16291659 Msa0197940:CDS 55.0%
TTTGTGCACAGTTCCCTGGG+AGG - chr2_1:16291644-16291663 Msa0197940:CDS 55.0%
TGACTTGAGGGAACCTCCCA+GGG + chr2_1:16291660-16291679 None:intergenic 55.0%
ATGACTTGAGGGAACCTCCC+AGG + chr2_1:16291661-16291680 None:intergenic 55.0%
TCTCAGGATCTGTGCTGGGA+TGG - chr2_1:16292824-16292843 Msa0197940:CDS 55.0%
CTCAGGATCTGTGCTGGGAT+GGG - chr2_1:16292825-16292844 Msa0197940:CDS 55.0%
! GGAGAGGAGAGAGAGTGTGG+AGG + chr2_1:16288894-16288913 None:intergenic 60.0%
CAGGGAGAGGAGAGAGAGTG+TGG + chr2_1:16288897-16288916 None:intergenic 60.0%
AGAGAGAGGATTCGGCGTGG+CGG + chr2_1:16288927-16288946 None:intergenic 60.0%
AGGAGAGAGAGGATTCGGCG+TGG + chr2_1:16288930-16288949 None:intergenic 60.0%
GGCGGAGGAGAGAGAGGATT+CGG + chr2_1:16288935-16288954 None:intergenic 60.0%
!! GGCGAAGTTAGGTTGGGAGG+AGG + chr2_1:16288956-16288975 None:intergenic 60.0%
!! GAGGGCGAAGTTAGGTTGGG+AGG + chr2_1:16288959-16288978 None:intergenic 60.0%
GGCGAGGGCGAAGTTAGGTT+GGG + chr2_1:16288962-16288981 None:intergenic 60.0%
TTCAGCGACGAGACGGAGGA+CGG + chr2_1:16288983-16289002 None:intergenic 60.0%
TGGAGGGTTCAGCGACGAGA+CGG + chr2_1:16288990-16289009 None:intergenic 60.0%
AGTTGACGGCAGCGGCTTGA+CGG + chr2_1:16289026-16289045 None:intergenic 60.0%
CTTCAGCGGACCAACGGAGA+CGG + chr2_1:16289062-16289081 None:intergenic 60.0%
!! TTGGTGGCGGAGAGCATGAG+AGG + chr2_1:16289135-16289154 None:intergenic 60.0%
GGGCTTCGGAGAGCTGAGAT+TGG + chr2_1:16289164-16289183 None:intergenic 60.0%
CGCAGCGTCAATCAACGACG+CGG + chr2_1:16289427-16289446 None:intergenic 60.0%
! CGCGTCGTTGATTGACGCTG+CGG - chr2_1:16289425-16289444 Msa0197940:intron 60.0%
! AGAGTTTCCAGTGGTGGGGG+CGG + chr2_1:16289462-16289481 None:intergenic 60.0%
GAGGGTGGCAGGCTACGTTA+TGG - chr2_1:16290455-16290474 Msa0197940:CDS 60.0%
TGGAGTAGACGCACAAGGGC+AGG + chr2_1:16290956-16290975 None:intergenic 60.0%
TGCCCTTGTGCGTCTACTCC+AGG - chr2_1:16290955-16290974 Msa0197940:CDS 60.0%
GGCCTGGAGTAGACGCACAA+GGG + chr2_1:16290960-16290979 None:intergenic 60.0%
AGGCCTGGAGTAGACGCACA+AGG + chr2_1:16290961-16290980 None:intergenic 60.0%
CCTGCAGCTTCTGCATCCTG+GGG - chr2_1:16291418-16291437 Msa0197940:CDS 60.0%
!! GTTAGGTTGGGAGGAGGCGG+AGG + chr2_1:16288950-16288969 None:intergenic 65.0%
CGGCGAGGGCGAAGTTAGGT+TGG + chr2_1:16288963-16288982 None:intergenic 65.0%
AGGACGGCGAGGGCGAAGTT+AGG + chr2_1:16288967-16288986 None:intergenic 65.0%
AGGGTTCAGCGACGAGACGG+AGG + chr2_1:16288987-16289006 None:intergenic 65.0%
CCCCAGGATGCAGAAGCTGC+AGG + chr2_1:16291421-16291440 None:intergenic 65.0%
AGAGGATTCGGCGTGGCGGC+GGG + chr2_1:16288923-16288942 None:intergenic 70.0%
GAGAGGATTCGGCGTGGCGG+CGG + chr2_1:16288924-16288943 None:intergenic 70.0%
GGAGGAGGCGGAGGAGAGAG+AGG + chr2_1:16288941-16288960 None:intergenic 70.0%
GACGAGACGGAGGACGGCGA+GGG + chr2_1:16288977-16288996 None:intergenic 70.0%
CGGACCAACGGAGACGGAGG+TGG + chr2_1:16289056-16289075 None:intergenic 70.0%
CAGCGGACCAACGGAGACGG+AGG + chr2_1:16289059-16289078 None:intergenic 70.0%
TGGCGGCGGGGTTCAGGGAG+AGG + chr2_1:16288910-16288929 None:intergenic 75.0%
GAGGATTCGGCGTGGCGGCG+GGG + chr2_1:16288922-16288941 None:intergenic 75.0%
CGACGAGACGGAGGACGGCG+AGG + chr2_1:16288978-16288997 None:intergenic 75.0%
ACAGCAGCCGCCCCCACCAC+TGG - chr2_1:16289452-16289471 Msa0197940:intron 75.0%
! CGGCGTGGCGGCGGGGTTCA+GGG + chr2_1:16288915-16288934 None:intergenic 80.0%
! TCGGCGTGGCGGCGGGGTTC+AGG + chr2_1:16288916-16288935 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16288737 16293373 16288737 ID=Msa0197940;Name=Msa0197940
chr2_1 mRNA 16288737 16293373 16288737 ID=Msa0197940-mRNA-1;Parent=Msa0197940;Name=Msa0197940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|1|1|0|0.5|2|544|969
chr2_1 exon 16288737 16289280 16288737 ID=Msa0197940-mRNA-1:exon:6776;Parent=Msa0197940-mRNA-1
chr2_1 exon 16290354 16293373 16290354 ID=Msa0197940-mRNA-1:exon:6775;Parent=Msa0197940-mRNA-1
chr2_1 five_prime_UTR 16293264 16293373 16293264 ID=Msa0197940-mRNA-1:five_prime_utr;Parent=Msa0197940-mRNA-1
chr2_1 CDS 16290354 16293263 16290354 ID=Msa0197940-mRNA-1:cds;Parent=Msa0197940-mRNA-1
chr2_1 three_prime_UTR 16288737 16289280 16288737 ID=Msa0197940-mRNA-1:three_prime_utr;Parent=Msa0197940-mRNA-1
Gene Sequence

>Msa0197940

ATGGAATGGAACCAACAAACTCTCCAATTCCTCTCCGAATGCTTCCTCCACACTCTCTCTCCTCTCCCTGAACCCCGCCGCCACGCCGAATCCTCTCTCTCCTCCGCCTCCTCCCAACCTAACTTCGCCCTCGCCGTCCTCCGTCTCGTCGCTGAACCCTCCATCTCCGATCAGATCCGTCAAGCCGCTGCCGTCAACTTCAAAAACCACCTCCGTCTCCGTTGGTCCGCTGAAGATAACCCAATCCTCGATTCCGAAAAGGAACAAATCAAAACCCTAATCGTACCTCTCATGCTCTCCGCCACCAACAAAATCCAATCTCAGCTCTCCGAAGCCCTAGCTATCATCGGGAATCACGATTTCCCCAAATCATGGCCCTCGCTTCTTCCGGAACTTGTTGCTAGTCTTCAAAAAGGTTCTCAGAGTTCCGATTACGCTTCAATCAATGGTATTCTCAGTACCGCGAATTCGATTTTTAAGAAATTTCGTTTTCAGTATAAAACTAATGATTTATTGCTTGATTTGAAGTATTGTTTGGATAATTTTGCTGCTCCTTTGCTTGAGATTTTTCTCAAAACCGCGTCGTTGATTGACGCTGCGGCTGCACAGCAGCCGCCCCCACCACTGGAAACTCTTAAACCGCTTTTCGAGTCACAGAAATTGTGTTGTAGGATATTTTTTTCACTGAATTTTCAAGAGTTGCCTGAGTTTTTTGAGGATCATATGAATGAATGGATGGGTGAGTTTAGGAAGTATTTGACTACTAGTTATCCTTCTCTTGAGGGGAGTGCTGATGGTCTTGCTCTTGTGGATGAGCTTAGGGCTGCGGTTTGTGAGAATATTAATCTTTATATGGAGAAGAATGAGGAGGAGTTTAAGGTTTTTTTGAATGATTTTGCACTTGCTGTGTGGACTTTGTTAGGGAATGTGTCGCAGTCGACTAGTCGTGACCAGCTTGCGGTTACGGCAATTAAGTTTTTGACGACGGTTAGTACGAGTGTTCATCATAGTTTGTTTGCGGCCGATGGGATTATACCGCAGATTTGTCAGGGGATTGTGATTCCGAATGTGAGGTTGAGGGAGGATGATGAGGAGTTGTTTGAGATGAATCATATTGAGTATATTAGGAGGGATATGGAAGGTAGTGATCTTGATACAAGGAGGAGGATTGCTTGTGAGTTGCTTAAGGGGATTGCTACGCGTTATGGAGATGCTGTTAGAAGCATTGTTTCTGCGCAAGTACAGAGTTTGTTAAGCTCCTTTAATGCAAACCCGGTGGCGAATTGGAAGGACAAGGATTGTGCGATATATTTGGTGGTCTCTCTTTCTACAAAGAAGGCTGCAACCGGTTATGTCTCCACAGATCTTGTTGATGTTCAAAGCTTTTTTGAATCTGTGATTGTCCCTGAGTTGCAAAAAGCAGATGTGAATGAGTATCCAATGCTTAAGGCAGGTGCACTCAAGTTCTTTACTATGTTCCGATCTCAAATATCAAAAGAAGTAGCATTGAGGTTTTTACCTGATTTGGTTCGTTTCCTTGCTGCGGAGTCAAATGTTGTTCATTCTTATGCTGCTAGCTGTATTGAGAAACTCTTAATAGTAAAGGACGAGGGTGGCAGGCTACGTTATGGTTCAGCAGATATCGCTCCAGTTTTCTCAATGCTGATGAACAATCTTTTCAGTGCCTTTAAGCTCCCAGAGTCTGAAGAGAATCAGTATGTTATGAAATGTATTATGAGGGTTCTTGGTGTTGCAGATATACAACTTGATGTTGCTCGAATTTGCATTGAGGGGTTGGGGTCAATTCTTTCTGAAGTTTGCAGAAATCCAAAAAACCCCACCTTCAACCATTATCTGTTTGAGTCAGTAGCCGGTCTTGTGAAGCGGGCTTCTGAGAGGGACCCAACTCTTGTGTCTGTTTTTGAAACAAGCCTTTTCCCTCGGCTTGAAATAATACTGTCCAATGATGTAACTGAATTTTTCCCATACGCATTTCAGTTACTTGCTCTGCTTGTTGAGTTAAACAGACCACCCATCCCACCAATCTACATGCAGATATTTGAGATTCTTTTGTCACCTGATTCTTGGAAAAGAAGCGCAAGTGTTCCTGCCCTTGTGCGTCTACTCCAGGCCTTCCTTCAAAAGGCACCAAATGAGATCAGCCAAGGGGATAGACTGACCAAAGTACTTGGCATATTTGACACGCTAATACAAGCATCAAGCACTTCTGATCAAGGATTTTACGTGCTTAACACAGTCATTGAAAGTCTTCAGTATGATGTTCTTACGCCTTATGTTTCTCACATTTGGGCTGCTATTTTTAGAGAGCTCCAGAGAAGGCGGACAGTAAAGCTCCTCAAGTCTCTCTTGATATTCAGTTCACTGTTTCTGGTTAAGCATGGTTCTGCAAATCTAGTTAATACTATGAATGCCGTCCAGCCTGATATATTTAGTGCGATTTTGACCCAGTTCTGGATTCCGAATCTTAAGCTGATTACTGGAACTATAGAGCTCAAACTGACTGCAGTTGCTTCAACCAGACTCATTTGTGAGTCTCCAGTACTTCTGGATCCTGCAGCTTCTGCATCCTGGGGTAAAATGGTGGACAGTATTGTGACACTTCTTTCTCGGCAAGAACAAGACAGGGTTGAGGAGGAGCCTGACATGCCAGATATTGCAGAAAATGTAGGTTATACTGCCACCTTCGTCCAACTTTACAATGCTGGAAGGAACCAAGAAGACCCCCTTCCAGATATTAATGATCCCCGGGAATTTTTTGTTTCTTCATTGGCCCAGCTTTGTGCACAGTTCCCTGGGAGGTTCCCTCAAGTCATCACTGCAAATGTTGATCCTGTGAATCAGACAGCGTTGCTTCAACTTTGCACCACTTACAACCGAGCATTAGTTTGA
Protein sequence

>Msa0197940

MEWNQQTLQFLSECFLHTLSPLPEPRRHAESSLSSASSQPNFALAVLRLVAEPSISDQIRQAAAVNFKNHLRLRWSAEDNPILDSEKEQIKTLIVPLMLSATNKIQSQLSEALAIIGNHDFPKSWPSLLPELVASLQKGSQSSDYASINGILSTANSIFKKFRFQYKTNDLLLDLKYCLDNFAAPLLEIFLKTASLIDAAAAQQPPPPLETLKPLFESQKLCCRIFFSLNFQELPEFFEDHMNEWMGEFRKYLTTSYPSLEGSADGLALVDELRAAVCENINLYMEKNEEEFKVFLNDFALAVWTLLGNVSQSTSRDQLAVTAIKFLTTVSTSVHHSLFAADGIIPQICQGIVIPNVRLREDDEELFEMNHIEYIRRDMEGSDLDTRRRIACELLKGIATRYGDAVRSIVSAQVQSLLSSFNANPVANWKDKDCAIYLVVSLSTKKAATGYVSTDLVDVQSFFESVIVPELQKADVNEYPMLKAGALKFFTMFRSQISKEVALRFLPDLVRFLAAESNVVHSYAASCIEKLLIVKDEGGRLRYGSADIAPVFSMLMNNLFSAFKLPESEENQYVMKCIMRVLGVADIQLDVARICIEGLGSILSEVCRNPKNPTFNHYLFESVAGLVKRASERDPTLVSVFETSLFPRLEIILSNDVTEFFPYAFQLLALLVELNRPPIPPIYMQIFEILLSPDSWKRSASVPALVRLLQAFLQKAPNEISQGDRLTKVLGIFDTLIQASSTSDQGFYVLNTVIESLQYDVLTPYVSHIWAAIFRELQRRRTVKLLKSLLIFSSLFLVKHGSANLVNTMNAVQPDIFSAILTQFWIPNLKLITGTIELKLTAVASTRLICESPVLLDPAASASWGKMVDSIVTLLSRQEQDRVEEEPDMPDIAENVGYTATFVQLYNAGRNQEDPLPDINDPREFFVSSLAQLCAQFPGRFPQVITANVDPVNQTALLQLCTTYNRALV*