AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051680 MtrunA17_Chr7g0221181 89.362 188 19 1 1 188 1 187 2.22e-119 343
Msa1051680 MtrunA17_Chr3g0126191 25.532 188 129 3 7 189 15 196 6.50e-19 85.1
Msa1051680 MtrunA17_Chr5g0397281 30.172 116 81 0 78 193 82 197 8.52e-19 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051680 AT1G71480.3 74.312 109 28 0 78 186 70 178 2.02e-54 177
Msa1051680 AT1G71480.1 53.254 169 73 2 22 188 16 180 5.13e-54 177
Msa1051680 AT1G71480.2 68.293 82 26 0 78 159 70 151 1.15e-33 122
Msa1051680 AT5G41470.1 36.207 116 74 0 78 193 74 189 8.91e-24 99.4

Find 78 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAAGCTCTACATTATTT+TGG 0.131860 7_2:+19125559 Msa1051680:CDS
ACAACCTTAGTAACTGAATT+TGG 0.169975 7_2:-19122487 None:intergenic
GTTGGGGTGATTTGGCATTT+AGG 0.201767 7_2:+19122945 Msa1051680:CDS
CATCATCTGTTGGGGTGATT+TGG 0.252810 7_2:+19122937 Msa1051680:CDS
ACTAGTGTAAAGGAGAAATA+TGG 0.261546 7_2:-19125594 None:intergenic
GAAGAAGAAGAGACAGAAAA+TGG 0.272859 7_2:+19122518 Msa1051680:CDS
CTTGTTAAGCGTGGAATAAT+TGG 0.288369 7_2:+19124219 Msa1051680:CDS
TCTCAATGGTTCACTTGTTT+AGG 0.310173 7_2:+19124605 Msa1051680:CDS
GTTACTAAGGTTGTTGGAAT+TGG 0.326378 7_2:+19122496 Msa1051680:CDS
GTCTTTCCACGTCCATTTGT+GGG 0.340761 7_2:+19122724 Msa1051680:CDS
TTAACAAGGTTGTCCTTTGC+TGG 0.345200 7_2:-19124204 None:intergenic
TGTGTAATGGCCGAGTGTTC+TGG 0.348604 7_2:+19124633 Msa1051680:CDS
ATGGTTCACTTGTTTAGGTT+TGG 0.356853 7_2:+19124610 Msa1051680:CDS
ATGTTGATTTGATTCTAGTT+TGG 0.373655 7_2:+19125620 Msa1051680:three_prime_UTR
TGTGAGCCACTTGTTATTGA+AGG 0.373665 7_2:+19124287 Msa1051680:CDS
CGGAGGATTCATCATCTGTT+GGG 0.373880 7_2:+19122928 Msa1051680:CDS
AAGTTGTATGATTAAGTTAT+GGG 0.379284 7_2:+19125759 Msa1051680:three_prime_UTR
AACAAACTGCAGATCCTTGC+TGG 0.380904 7_2:-19122889 None:intergenic
AGTGGAGCATAAAATGATTA+TGG 0.395310 7_2:+19122378 Msa1051680:exon
TTGTGATTGTGTGCTGCTAA+TGG 0.396769 7_2:-19122410 None:intergenic
TGTCTTTCCACGTCCATTTG+TGG 0.401046 7_2:+19122723 Msa1051680:CDS
CTTGGAAAACTATACAAAAT+CGG 0.406653 7_2:+19124178 Msa1051680:CDS
GAAGTTGTATGATTAAGTTA+TGG 0.407512 7_2:+19125758 Msa1051680:three_prime_UTR
AATTCAGTTACTAAGGTTGT+TGG 0.412689 7_2:+19122490 Msa1051680:CDS
TGTTCCAAATTCAGTTACTA+AGG 0.424523 7_2:+19122483 Msa1051680:CDS
TATAGATTTATATTCAGAAA+AGG 0.439008 7_2:+19125691 Msa1051680:three_prime_UTR
AAACTGCATCCTTTGCTAAA+GGG 0.439731 7_2:-19123604 None:intergenic
CTAAAATGCTGCCATGGAAT+TGG 0.450930 7_2:+19124546 Msa1051680:CDS
TGTTTAGGTTTGGTGTGTAA+TGG 0.451444 7_2:+19124620 Msa1051680:CDS
AAAACTGCATCCTTTGCTAA+AGG 0.460379 7_2:-19123605 None:intergenic
GACACTCATTTGTGTAGTGC+AGG 0.464251 7_2:+19124246 Msa1051680:CDS
TATCGTTTGGAAGTGATCAA+TGG 0.466251 7_2:+19123628 Msa1051680:CDS
GTATTCATTCTATTTCTCAA+TGG 0.469588 7_2:+19124591 Msa1051680:CDS
CTCTGAAAATTGTGTGTATG+AGG 0.478927 7_2:+19122696 Msa1051680:CDS
GTTACCTTACGACCCACAAA+TGG 0.492552 7_2:-19122736 None:intergenic
CTAGTGTAAAGGAGAAATAT+GGG 0.494177 7_2:-19125593 None:intergenic
CATCCTTTGCTAAAGGGAAA+GGG 0.498656 7_2:-19123598 None:intergenic
TTGAAGAGTCTATGCGGTGC+TGG 0.502685 7_2:+19122351 Msa1051680:five_prime_UTR
ACGGAGGATTCATCATCTGT+TGG 0.502813 7_2:+19122927 Msa1051680:CDS
CAATTATTCCACGCTTAACA+AGG 0.510894 7_2:-19124218 None:intergenic
TTCAGTCCGTTTCGAGAGCT+AGG 0.513909 7_2:+19124468 Msa1051680:intron
GCATCCTTTGCTAAAGGGAA+AGG 0.514176 7_2:-19123599 None:intergenic
TGTTATTGATGATTTGTCTA+CGG 0.524833 7_2:+19122908 Msa1051680:CDS
ACGTCCATTTGTGGGTCGTA+AGG 0.526163 7_2:+19122732 Msa1051680:CDS
TCAACATACTACTAGTGTAA+AGG 0.527209 7_2:-19125604 None:intergenic
TCTTCAACGATTTCCTCAGT+TGG 0.530591 7_2:+19125523 Msa1051680:CDS
AGTGGTGAGAAATTTCTATG+AGG 0.536419 7_2:+19122633 Msa1051680:CDS
CTATGCGGTGCTGGGTGAAG+TGG 0.540701 7_2:+19122360 Msa1051680:five_prime_UTR
AACAGTCTAAAATGCTGCCA+TGG 0.544463 7_2:+19124540 Msa1051680:CDS
CAGTGGTGTTCCAGAACACT+CGG 0.546962 7_2:-19124643 None:intergenic
GTGGTGAGAAATTTCTATGA+GGG 0.551876 7_2:+19122634 Msa1051680:CDS
AAGCCCTTTCCCTTTAGCAA+AGG 0.556364 7_2:+19123595 Msa1051680:CDS
ACAAAATCGGTTACCAGCAA+AGG 0.559696 7_2:+19124191 Msa1051680:CDS
CACACACTTTGATGATAACA+AGG 0.561817 7_2:+19122591 Msa1051680:CDS
TTAGCTTGCAACCAATTCCA+TGG 0.568835 7_2:-19124557 None:intergenic
ATCAAACCTTCAATAACAAG+TGG 0.574212 7_2:-19124293 None:intergenic
TTTATGAATGCAGAATGGAA+AGG 0.576026 7_2:+19123571 Msa1051680:intron
GCATGTGATCAGTCATTTGA+AGG 0.581548 7_2:+19124143 Msa1051680:intron
CCATATATACCTAGAGACGC+AGG 0.593005 7_2:-19124674 None:intergenic
TTGATTCCTAGCTCTCGAAA+CGG 0.595961 7_2:-19124474 None:intergenic
CTATGTGACAAAGAAGTCAA+AGG 0.599318 7_2:-19122451 None:intergenic
TGAAGAGTCTATGCGGTGCT+GGG 0.606771 7_2:+19122352 Msa1051680:five_prime_UTR
TGTGATCAGTCATTTGAAGG+TGG 0.609440 7_2:+19124146 Msa1051680:intron
TGTAGATTCAGCTTCAACAG+TGG 0.614901 7_2:+19122615 Msa1051680:CDS
AAGGACAACCTTGTTAAGCG+TGG 0.624456 7_2:+19124210 Msa1051680:CDS
TTACGACCCACAAATGGACG+TGG 0.627873 7_2:-19122730 None:intergenic
TATTGATGATTTGTCTACGG+AGG 0.632550 7_2:+19122911 Msa1051680:CDS
CAGTGATAAAGAGTGTGACA+TGG 0.641209 7_2:+19125498 Msa1051680:CDS
ACACTCATTTGTGTAGTGCA+GGG 0.642280 7_2:+19124247 Msa1051680:CDS
CTTGTTATCATCAAAGTGTG+TGG 0.642662 7_2:-19122590 None:intergenic
GGAGGATTCATCATCTGTTG+GGG 0.645806 7_2:+19122929 Msa1051680:CDS
AATATTAGAGTTAATAACAG+TGG 0.656186 7_2:+19122541 Msa1051680:CDS
TATAATCGGTCTGCCAACTG+AGG 0.665914 7_2:-19125536 None:intergenic
GTTCACTGAGTCTACCAGCA+AGG 0.668841 7_2:+19122875 Msa1051680:CDS
TAAGCGTGGAATAATTGGAG+AGG 0.675464 7_2:+19124224 Msa1051680:CDS
CATATATACCTAGAGACGCA+GGG 0.677584 7_2:-19124673 None:intergenic
CAAATGGACGTGGAAAGACA+AGG 0.682609 7_2:-19122720 None:intergenic
TTAAGTTTGAAGAGTCTATG+CGG 0.727819 7_2:+19122345 Msa1051680:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATTAAAATAAATTTA+TGG - chr7_2:19122774-19122793 None:intergenic 0.0%
!! TTTAATTAAATAATTAAATT+TGG + chr7_2:19122783-19122802 Msa1051680:intron 0.0%
!! AATTAAATAATTAAATTTGG+TGG + chr7_2:19122786-19122805 Msa1051680:intron 10.0%
!! AAAAACTTACTACTAAATAA+GGG - chr7_2:19123289-19123308 None:intergenic 15.0%
!! ATCTATTTAAATCTAAGTAT+GGG + chr7_2:19123866-19123885 Msa1051680:intron 15.0%
!! TATAGATTTATATTCAGAAA+AGG + chr7_2:19125691-19125710 Msa1051680:three_prime_UTR 15.0%
!! AATATTAGAGTTAATAACAG+TGG + chr7_2:19122541-19122560 Msa1051680:CDS 20.0%
!!! ATTGGTTTCTTAATTATTAC+AGG + chr7_2:19122830-19122849 Msa1051680:intron 20.0%
!! AAAACTTACTACTAAATAAG+GGG - chr7_2:19123288-19123307 None:intergenic 20.0%
!! CAAAAACTTACTACTAAATA+AGG - chr7_2:19123290-19123309 None:intergenic 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + chr7_2:19123288-19123307 Msa1051680:intron 20.0%
!! GATCTATTTAAATCTAAGTA+TGG + chr7_2:19123865-19123884 Msa1051680:intron 20.0%
!!! ATATTTCTGATAAACAGATA+TGG + chr7_2:19125184-19125203 Msa1051680:intron 20.0%
!! AAGTTGTATGATTAAGTTAT+GGG + chr7_2:19125759-19125778 Msa1051680:three_prime_UTR 20.0%
! TGCTAGAAGTTTATACAAAT+TGG + chr7_2:19122812-19122831 Msa1051680:intron 25.0%
!! TGTTATTGATGATTTGTCTA+CGG + chr7_2:19122908-19122927 Msa1051680:CDS 25.0%
!!! AAAGTATTGGATTCTTTTTG+AGG + chr7_2:19123523-19123542 Msa1051680:intron 25.0%
! ATTTGTTTATGAATGCAGAA+TGG + chr7_2:19123566-19123585 Msa1051680:intron 25.0%
! TGATGATTATATTCTTGTAG+AGG + chr7_2:19123809-19123828 Msa1051680:intron 25.0%
! CTTGGAAAACTATACAAAAT+CGG + chr7_2:19124178-19124197 Msa1051680:CDS 25.0%
!! GTATTCATTCTATTTCTCAA+TGG + chr7_2:19124591-19124610 Msa1051680:CDS 25.0%
!! AATTTCTAAGCATTTGAGTT+GGG + chr7_2:19124969-19124988 Msa1051680:intron 25.0%
!! AAGAAACTTCAAGTTAAACT+GGG - chr7_2:19125013-19125032 None:intergenic 25.0%
!! AAAGAAACTTCAAGTTAAAC+TGG - chr7_2:19125014-19125033 None:intergenic 25.0%
! TACTATTGATATTTCTTCCT+CGG + chr7_2:19125403-19125422 Msa1051680:intron 25.0%
!!! ATGTTGATTTGATTCTAGTT+TGG + chr7_2:19125620-19125639 Msa1051680:three_prime_UTR 25.0%
! GAAGTTGTATGATTAAGTTA+TGG + chr7_2:19125758-19125777 Msa1051680:three_prime_UTR 25.0%
TTAAGTTTGAAGAGTCTATG+CGG + chr7_2:19122345-19122364 Msa1051680:five_prime_UTR 30.0%
AGTGGAGCATAAAATGATTA+TGG + chr7_2:19122378-19122397 Msa1051680:exon 30.0%
TGTTCCAAATTCAGTTACTA+AGG + chr7_2:19122483-19122502 Msa1051680:CDS 30.0%
ACAACCTTAGTAACTGAATT+TGG - chr7_2:19122490-19122509 None:intergenic 30.0%
AATTCAGTTACTAAGGTTGT+TGG + chr7_2:19122490-19122509 Msa1051680:CDS 30.0%
AATATGAATTGAGTGGTACT+CGG + chr7_2:19123256-19123275 Msa1051680:intron 30.0%
TTTATGAATGCAGAATGGAA+AGG + chr7_2:19123571-19123590 Msa1051680:intron 30.0%
! ATTGGAGATATACGCTATTT+TGG + chr7_2:19124021-19124040 Msa1051680:intron 30.0%
GGAAGACTATACAAATTATG+CGG + chr7_2:19124121-19124140 Msa1051680:intron 30.0%
ATCAAACCTTCAATAACAAG+TGG - chr7_2:19124296-19124315 None:intergenic 30.0%
TTTGATCCGAAATAGCAAAA+TGG + chr7_2:19124327-19124346 Msa1051680:intron 30.0%
! GTCACTTGTTTAAATTTTCC+AGG + chr7_2:19124387-19124406 Msa1051680:intron 30.0%
! ACTTGTTTAAATTTTCCAGG+TGG + chr7_2:19124390-19124409 Msa1051680:intron 30.0%
AGCTAAAATTTGTAACAGTG+TGG + chr7_2:19124435-19124454 Msa1051680:intron 30.0%
! CAAGTGATTTTTCATGACAA+AGG + chr7_2:19124494-19124513 Msa1051680:CDS 30.0%
TTCTGTATGCGTTAATTCAA+TGG + chr7_2:19124780-19124799 Msa1051680:intron 30.0%
! CTGTACTGTTTTATCAGTTA+AGG + chr7_2:19124806-19124825 Msa1051680:intron 30.0%
!! GATTTTGGCAGAATAGTTTA+TGG + chr7_2:19124834-19124853 Msa1051680:intron 30.0%
CAATTTCTAAGCATTTGAGT+TGG + chr7_2:19124968-19124987 Msa1051680:intron 30.0%
AGTTTCTTTACTCAGTTTAG+TGG + chr7_2:19125025-19125044 Msa1051680:intron 30.0%
TAATGTTCTTGTTCACATTC+AGG + chr7_2:19125063-19125082 Msa1051680:intron 30.0%
TTCTGATAAACAGATATGGA+CGG + chr7_2:19125188-19125207 Msa1051680:intron 30.0%
TTTGGAAACAATTAACATGC+AGG + chr7_2:19125475-19125494 Msa1051680:intron 30.0%
!! TGTAGAGCTTTTGCTATAAT+CGG - chr7_2:19125553-19125572 None:intergenic 30.0%
! GCAAAAGCTCTACATTATTT+TGG + chr7_2:19125559-19125578 Msa1051680:CDS 30.0%
!!! AGCTCTACATTATTTTGGAA+AGG + chr7_2:19125564-19125583 Msa1051680:CDS 30.0%
!!! GCTCTACATTATTTTGGAAA+GGG + chr7_2:19125565-19125584 Msa1051680:CDS 30.0%
CTAGTGTAAAGGAGAAATAT+GGG - chr7_2:19125596-19125615 None:intergenic 30.0%
ACTAGTGTAAAGGAGAAATA+TGG - chr7_2:19125597-19125616 None:intergenic 30.0%
TCAACATACTACTAGTGTAA+AGG - chr7_2:19125607-19125626 None:intergenic 30.0%
CTATGTGACAAAGAAGTCAA+AGG - chr7_2:19122454-19122473 None:intergenic 35.0%
GTTACTAAGGTTGTTGGAAT+TGG + chr7_2:19122496-19122515 Msa1051680:CDS 35.0%
GAAGAAGAAGAGACAGAAAA+TGG + chr7_2:19122518-19122537 Msa1051680:CDS 35.0%
! CTTGTTATCATCAAAGTGTG+TGG - chr7_2:19122593-19122612 None:intergenic 35.0%
! CACACACTTTGATGATAACA+AGG + chr7_2:19122591-19122610 Msa1051680:CDS 35.0%
AGTGGTGAGAAATTTCTATG+AGG + chr7_2:19122633-19122652 Msa1051680:CDS 35.0%
GTGGTGAGAAATTTCTATGA+GGG + chr7_2:19122634-19122653 Msa1051680:CDS 35.0%
! CTCTGAAAATTGTGTGTATG+AGG + chr7_2:19122696-19122715 Msa1051680:CDS 35.0%
! TATTGATGATTTGTCTACGG+AGG + chr7_2:19122911-19122930 Msa1051680:CDS 35.0%
TCAACTTTGTGTTTCAATGC+AGG - chr7_2:19123115-19123134 None:intergenic 35.0%
AAGTACTTTCTTCACTGCTT+TGG - chr7_2:19123172-19123191 None:intergenic 35.0%
! ACTTAGAAAGTGTGAAAAGC+AGG + chr7_2:19123217-19123236 Msa1051680:intron 35.0%
! CTTAGAAAGTGTGAAAAGCA+GGG + chr7_2:19123218-19123237 Msa1051680:intron 35.0%
CGATACGAATATGAATTGAG+TGG + chr7_2:19123249-19123268 Msa1051680:intron 35.0%
AGAACAATCAGTCAGAAGAT+TGG - chr7_2:19123334-19123353 None:intergenic 35.0%
GCGAAATGATTGCAAAGTAT+TGG + chr7_2:19123510-19123529 Msa1051680:intron 35.0%
AAACTGCATCCTTTGCTAAA+GGG - chr7_2:19123607-19123626 None:intergenic 35.0%
AAAACTGCATCCTTTGCTAA+AGG - chr7_2:19123608-19123627 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG + chr7_2:19123615-19123634 Msa1051680:CDS 35.0%
TATCGTTTGGAAGTGATCAA+TGG + chr7_2:19123628-19123647 Msa1051680:CDS 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + chr7_2:19123830-19123849 Msa1051680:intron 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + chr7_2:19123836-19123855 Msa1051680:intron 35.0%
AAGATAGAGAGGTTAGAGAA+GGG + chr7_2:19123942-19123961 Msa1051680:intron 35.0%
AAGATCAGTGTGTTTAGTCT+TGG + chr7_2:19123995-19124014 Msa1051680:intron 35.0%
!! TGTGTTTAGTCTTGGATGAT+TGG + chr7_2:19124003-19124022 Msa1051680:intron 35.0%
TAGACTGTTTCCGTTATCTA+TGG + chr7_2:19124088-19124107 Msa1051680:intron 35.0%
ACTTTGACGTCCATAGATAA+CGG - chr7_2:19124101-19124120 None:intergenic 35.0%
CAATTATTCCACGCTTAACA+AGG - chr7_2:19124221-19124240 None:intergenic 35.0%
CTTGTTAAGCGTGGAATAAT+TGG + chr7_2:19124219-19124238 Msa1051680:CDS 35.0%
ATCCGAAATAGCAAAATGGT+TGG + chr7_2:19124331-19124350 Msa1051680:intron 35.0%
TCCGAAATAGCAAAATGGTT+GGG + chr7_2:19124332-19124351 Msa1051680:intron 35.0%
!!! ACCCAACCATTTTGCTATTT+CGG - chr7_2:19124336-19124355 None:intergenic 35.0%
AATAGCAAAATGGTTGGGTT+TGG + chr7_2:19124337-19124356 Msa1051680:intron 35.0%
!! AAATTTTCCAGGTGGATTCA+AGG + chr7_2:19124398-19124417 Msa1051680:intron 35.0%
TCTCAATGGTTCACTTGTTT+AGG + chr7_2:19124605-19124624 Msa1051680:CDS 35.0%
! ATGGTTCACTTGTTTAGGTT+TGG + chr7_2:19124610-19124629 Msa1051680:CDS 35.0%
!! TGTTTAGGTTTGGTGTGTAA+TGG + chr7_2:19124620-19124639 Msa1051680:CDS 35.0%
! TCAGTTAAGGTTGCAGATTT+TGG + chr7_2:19124819-19124838 Msa1051680:intron 35.0%
! GTGTTTCTTTGCTATATAGC+AGG + chr7_2:19124942-19124961 Msa1051680:intron 35.0%
AAGAAACACATTCAAGCACA+AGG - chr7_2:19125093-19125112 None:intergenic 35.0%
TCTGATAAACAGATATGGAC+GGG + chr7_2:19125189-19125208 Msa1051680:intron 35.0%
! AGCGTAACTTTTCAGTGATA+AGG - chr7_2:19125270-19125289 None:intergenic 35.0%
! AGCTATCAGTCTGATCTTTT+TGG + chr7_2:19125457-19125476 Msa1051680:intron 35.0%
! TTGTGATTGTGTGCTGCTAA+TGG - chr7_2:19122413-19122432 None:intergenic 40.0%
TGTAGATTCAGCTTCAACAG+TGG + chr7_2:19122615-19122634 Msa1051680:CDS 40.0%
TACTTTCTTCACTGCTTTGG+AGG - chr7_2:19123169-19123188 None:intergenic 40.0%
AGCTGTTGACGTTGTAATCA+GGG + chr7_2:19123377-19123396 Msa1051680:intron 40.0%
CATCCTTTGCTAAAGGGAAA+GGG - chr7_2:19123601-19123620 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG + chr7_2:19123701-19123720 Msa1051680:intron 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG + chr7_2:19123738-19123757 Msa1051680:intron 40.0%
ATCTAAGTATGGGCATGTTG+AGG + chr7_2:19123876-19123895 Msa1051680:intron 40.0%
TCTAAGTATGGGCATGTTGA+GGG + chr7_2:19123877-19123896 Msa1051680:intron 40.0%
ATGTTGAGGGTTAAATCGGA+AGG + chr7_2:19123890-19123909 Msa1051680:intron 40.0%
TGTTGAGGGTTAAATCGGAA+GGG + chr7_2:19123891-19123910 Msa1051680:intron 40.0%
GAAGATAGAGAGGTTAGAGA+AGG + chr7_2:19123941-19123960 Msa1051680:intron 40.0%
GTTATCTATGGACGTCAAAG+TGG + chr7_2:19124100-19124119 Msa1051680:intron 40.0%
GCATGTGATCAGTCATTTGA+AGG + chr7_2:19124143-19124162 Msa1051680:intron 40.0%
TGTGATCAGTCATTTGAAGG+TGG + chr7_2:19124146-19124165 Msa1051680:intron 40.0%
ACAAAATCGGTTACCAGCAA+AGG + chr7_2:19124191-19124210 Msa1051680:CDS 40.0%
TTAACAAGGTTGTCCTTTGC+TGG - chr7_2:19124207-19124226 None:intergenic 40.0%
TAAGCGTGGAATAATTGGAG+AGG + chr7_2:19124224-19124243 Msa1051680:CDS 40.0%
ACACTCATTTGTGTAGTGCA+GGG + chr7_2:19124247-19124266 Msa1051680:CDS 40.0%
!! TGTGAGCCACTTGTTATTGA+AGG + chr7_2:19124287-19124306 Msa1051680:CDS 40.0%
CAAAATGGTTGGGTTTGGAA+GGG + chr7_2:19124342-19124361 Msa1051680:intron 40.0%
AAAATGGTTGGGTTTGGAAG+GGG + chr7_2:19124343-19124362 Msa1051680:intron 40.0%
! TTGATTCCTAGCTCTCGAAA+CGG - chr7_2:19124477-19124496 None:intergenic 40.0%
! AACAGTCTAAAATGCTGCCA+TGG + chr7_2:19124540-19124559 Msa1051680:CDS 40.0%
CTAAAATGCTGCCATGGAAT+TGG + chr7_2:19124546-19124565 Msa1051680:CDS 40.0%
!! TTAGCTTGCAACCAATTCCA+TGG - chr7_2:19124560-19124579 None:intergenic 40.0%
CATATATACCTAGAGACGCA+GGG - chr7_2:19124676-19124695 None:intergenic 40.0%
ACAGAGGGAAAATTGCTTGA+AGG - chr7_2:19124877-19124896 None:intergenic 40.0%
AGGACACTCAAAACAACAGA+GGG - chr7_2:19124892-19124911 None:intergenic 40.0%
!! TGTTTTGAGTGTCCTGGTAT+TGG + chr7_2:19124897-19124916 Msa1051680:intron 40.0%
TCAGAAGACACTAAAATCCG+AGG - chr7_2:19125423-19125442 None:intergenic 40.0%
! CAGTGATAAAGAGTGTGACA+TGG + chr7_2:19125498-19125517 Msa1051680:CDS 40.0%
TCTTCAACGATTTCCTCAGT+TGG + chr7_2:19125523-19125542 Msa1051680:CDS 40.0%
! CACTTTCACATTTTCTGCGT+TGG - chr7_2:19125668-19125687 None:intergenic 40.0%
CAAATGGACGTGGAAAGACA+AGG - chr7_2:19122723-19122742 None:intergenic 45.0%
TGTCTTTCCACGTCCATTTG+TGG + chr7_2:19122723-19122742 Msa1051680:CDS 45.0%
GTCTTTCCACGTCCATTTGT+GGG + chr7_2:19122724-19122743 Msa1051680:CDS 45.0%
GTTACCTTACGACCCACAAA+TGG - chr7_2:19122739-19122758 None:intergenic 45.0%
AACAAACTGCAGATCCTTGC+TGG - chr7_2:19122892-19122911 None:intergenic 45.0%
ACGGAGGATTCATCATCTGT+TGG + chr7_2:19122927-19122946 Msa1051680:CDS 45.0%
CGGAGGATTCATCATCTGTT+GGG + chr7_2:19122928-19122947 Msa1051680:CDS 45.0%
GGAGGATTCATCATCTGTTG+GGG + chr7_2:19122929-19122948 Msa1051680:CDS 45.0%
CATCATCTGTTGGGGTGATT+TGG + chr7_2:19122937-19122956 Msa1051680:CDS 45.0%
! GTTGGGGTGATTTGGCATTT+AGG + chr7_2:19122945-19122964 Msa1051680:CDS 45.0%
! ACAAAGTTGATCTCCTGAGC+TGG + chr7_2:19123125-19123144 Msa1051680:intron 45.0%
GATTGGAGCGTATCACAACT+CGG - chr7_2:19123317-19123336 None:intergenic 45.0%
GAGCTGTTGACGTTGTAATC+AGG + chr7_2:19123376-19123395 Msa1051680:intron 45.0%
TGTTGACGTTGTAATCAGGG+TGG + chr7_2:19123380-19123399 Msa1051680:intron 45.0%
TGTTCCCTGATATCTGCCAT+CGG + chr7_2:19123415-19123434 Msa1051680:intron 45.0%
GCTTGGCTATTGCTCTTATC+TGG + chr7_2:19123446-19123465 Msa1051680:intron 45.0%
AAGCCCTTTCCCTTTAGCAA+AGG + chr7_2:19123595-19123614 Msa1051680:CDS 45.0%
GCATCCTTTGCTAAAGGGAA+AGG - chr7_2:19123602-19123621 None:intergenic 45.0%
GGGCATGTTGAGGGTTAAAT+CGG + chr7_2:19123886-19123905 Msa1051680:intron 45.0%
AGGGTTAAATCGGAAGGGTT+GGG + chr7_2:19123896-19123915 Msa1051680:intron 45.0%
CTCTCTATCTTCTTCCACCA+CGG - chr7_2:19123933-19123952 None:intergenic 45.0%
!! AGGTTAGAGAAGGGTGTTGA+GGG + chr7_2:19123951-19123970 Msa1051680:intron 45.0%
!!! CGCTATTTTGGTTGAAACCG+TGG + chr7_2:19124033-19124052 Msa1051680:intron 45.0%
!!! TGAAGGTGGTTTTGTTCGCT+TGG + chr7_2:19124160-19124179 Msa1051680:CDS 45.0%
AAGGACAACCTTGTTAAGCG+TGG + chr7_2:19124210-19124229 Msa1051680:CDS 45.0%
GACACTCATTTGTGTAGTGC+AGG + chr7_2:19124246-19124265 Msa1051680:CDS 45.0%
GCAAAATGGTTGGGTTTGGA+AGG + chr7_2:19124341-19124360 Msa1051680:intron 45.0%
!! TTTTCCAGGTGGATTCAAGG+AGG + chr7_2:19124401-19124420 Msa1051680:intron 45.0%
AGACGCAGGGAAAAAAACAG+TGG - chr7_2:19124663-19124682 None:intergenic 45.0%
!!! GTTTTTTTCCCTGCGTCTCT+AGG + chr7_2:19124665-19124684 Msa1051680:CDS 45.0%
CCATATATACCTAGAGACGC+AGG - chr7_2:19124677-19124696 None:intergenic 45.0%
CCTGCGTCTCTAGGTATATA+TGG + chr7_2:19124674-19124693 Msa1051680:intron 45.0%
GCGTCTCTAGGTATATATGG+TGG + chr7_2:19124677-19124696 Msa1051680:intron 45.0%
! GTTTAAGACGCTTCTGTGCA+AGG + chr7_2:19124749-19124768 Msa1051680:intron 45.0%
CAGGACACTCAAAACAACAG+AGG - chr7_2:19124893-19124912 None:intergenic 45.0%
!!! CTCTGTTGTTTTGAGTGTCC+TGG + chr7_2:19124891-19124910 Msa1051680:intron 45.0%
!! GTCCTGGTATTGGTGCTTTA+TGG + chr7_2:19124907-19124926 Msa1051680:intron 45.0%
! CTCCATAAAGCACCAATACC+AGG - chr7_2:19124912-19124931 None:intergenic 45.0%
TTGAACCTGCAATCAAGCCA+GGG + chr7_2:19125218-19125237 Msa1051680:intron 45.0%
CATACCAAAGTTGAATCCCC+TGG - chr7_2:19125238-19125257 None:intergenic 45.0%
TATAATCGGTCTGCCAACTG+AGG - chr7_2:19125539-19125558 None:intergenic 45.0%
TTGAAGAGTCTATGCGGTGC+TGG + chr7_2:19122351-19122370 Msa1051680:five_prime_UTR 50.0%
TGAAGAGTCTATGCGGTGCT+GGG + chr7_2:19122352-19122371 Msa1051680:five_prime_UTR 50.0%
TTACGACCCACAAATGGACG+TGG - chr7_2:19122733-19122752 None:intergenic 50.0%
ACGTCCATTTGTGGGTCGTA+AGG + chr7_2:19122732-19122751 Msa1051680:CDS 50.0%
GTTCACTGAGTCTACCAGCA+AGG + chr7_2:19122875-19122894 Msa1051680:CDS 50.0%
GAGGGTTATATCACCAGCTC+AGG - chr7_2:19123141-19123160 None:intergenic 50.0%
ACGTCAACAGCTCAAAGAGC+AGG - chr7_2:19123369-19123388 None:intergenic 50.0%
GTTCCCTGATATCTGCCATC+GGG + chr7_2:19123416-19123435 Msa1051680:intron 50.0%
TTCCCTGATATCTGCCATCG+GGG + chr7_2:19123417-19123436 Msa1051680:intron 50.0%
AACCCCGATGGCAGATATCA+GGG - chr7_2:19123422-19123441 None:intergenic 50.0%
GAGGGTTAAATCGGAAGGGT+TGG + chr7_2:19123895-19123914 Msa1051680:intron 50.0%
GTTGGGTGTTTGATTCACCG+TGG + chr7_2:19123913-19123932 Msa1051680:intron 50.0%
! CGTGGTGGAAGAAGATAGAG+AGG + chr7_2:19123931-19123950 Msa1051680:intron 50.0%
!! GAGGTTAGAGAAGGGTGTTG+AGG + chr7_2:19123950-19123969 Msa1051680:intron 50.0%
!! GGTTAGAGAAGGGTGTTGAG+GGG + chr7_2:19123952-19123971 Msa1051680:intron 50.0%
!! GTTAGAGAAGGGTGTTGAGG+GGG + chr7_2:19123953-19123972 Msa1051680:intron 50.0%
TGGTTGAAACCGTGGATGAC+TGG + chr7_2:19124041-19124060 Msa1051680:intron 50.0%
GGTTGAAACCGTGGATGACT+GGG + chr7_2:19124042-19124061 Msa1051680:intron 50.0%
ACGATACACCCAGTCATCCA+CGG - chr7_2:19124053-19124072 None:intergenic 50.0%
TCTTCCTCCTTGAATCCACC+TGG - chr7_2:19124408-19124427 None:intergenic 50.0%
TTCAGTCCGTTTCGAGAGCT+AGG + chr7_2:19124468-19124487 Msa1051680:intron 50.0%
TGTGTAATGGCCGAGTGTTC+TGG + chr7_2:19124633-19124652 Msa1051680:CDS 50.0%
CAGTGGTGTTCCAGAACACT+CGG - chr7_2:19124646-19124665 None:intergenic 50.0%
GTTGAACCTGCAATCAAGCC+AGG + chr7_2:19125217-19125236 Msa1051680:intron 50.0%
TGAACCTGCAATCAAGCCAG+GGG + chr7_2:19125219-19125238 Msa1051680:intron 50.0%
CAAGCCAGGGGATTCAACTT+TGG + chr7_2:19125231-19125250 Msa1051680:intron 50.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - chr7_2:19123159-19123178 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - chr7_2:19123163-19123182 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+AGG - chr7_2:19123423-19123442 None:intergenic 55.0%
GGGTGTTTGATTCACCGTGG+TGG + chr7_2:19123916-19123935 Msa1051680:intron 55.0%
! GAATCCCCTGGCTTGATTGC+AGG - chr7_2:19125226-19125245 None:intergenic 55.0%
! CTATGCGGTGCTGGGTGAAG+TGG + chr7_2:19122360-19122379 Msa1051680:five_prime_UTR 60.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - chr7_2:19123160-19123179 None:intergenic 60.0%
! GGTGTTGAGGGGGCAAGTCA+GGG + chr7_2:19123963-19123982 Msa1051680:intron 60.0%
TTGAGGGGGCAAGTCAGGGT+TGG + chr7_2:19123967-19123986 Msa1051680:intron 60.0%
TGCCATCGGGGTTGTGCGCT+TGG + chr7_2:19123429-19123448 Msa1051680:intron 65.0%
AGCCAAGCGCACAACCCCGA+TGG - chr7_2:19123434-19123453 None:intergenic 65.0%
!! GGGTGTTGAGGGGGCAAGTC+AGG + chr7_2:19123962-19123981 Msa1051680:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 19122300 19125800 19122300 ID=Msa1051680;Name=Msa1051680
chr7_2 mRNA 19122300 19125800 19122300 ID=Msa1051680-mRNA-1;Parent=Msa1051680;Name=Msa1051680-mRNA-1;_AED=0.30;_eAED=0.36;_QI=91|0.4|0.66|1|1|1|6|185|348
chr7_2 exon 19122300 19122753 19122300 ID=Msa1051680-mRNA-1:exon:4202;Parent=Msa1051680-mRNA-1
chr7_2 exon 19122852 19122966 19122852 ID=Msa1051680-mRNA-1:exon:4203;Parent=Msa1051680-mRNA-1
chr7_2 exon 19123584 19123665 19123584 ID=Msa1051680-mRNA-1:exon:4204;Parent=Msa1051680-mRNA-1
chr7_2 exon 19124155 19124308 19124155 ID=Msa1051680-mRNA-1:exon:4205;Parent=Msa1051680-mRNA-1
chr7_2 exon 19124473 19124686 19124473 ID=Msa1051680-mRNA-1:exon:4206;Parent=Msa1051680-mRNA-1
chr7_2 exon 19125497 19125800 19125497 ID=Msa1051680-mRNA-1:exon:4207;Parent=Msa1051680-mRNA-1
chr7_2 five_prime_UTR 19122300 19122390 19122300 ID=Msa1051680-mRNA-1:five_prime_utr;Parent=Msa1051680-mRNA-1
chr7_2 CDS 19122391 19122753 19122391 ID=Msa1051680-mRNA-1:cds;Parent=Msa1051680-mRNA-1
chr7_2 CDS 19122852 19122966 19122852 ID=Msa1051680-mRNA-1:cds;Parent=Msa1051680-mRNA-1
chr7_2 CDS 19123584 19123665 19123584 ID=Msa1051680-mRNA-1:cds;Parent=Msa1051680-mRNA-1
chr7_2 CDS 19124155 19124308 19124155 ID=Msa1051680-mRNA-1:cds;Parent=Msa1051680-mRNA-1
chr7_2 CDS 19124473 19124686 19124473 ID=Msa1051680-mRNA-1:cds;Parent=Msa1051680-mRNA-1
chr7_2 CDS 19125497 19125615 19125497 ID=Msa1051680-mRNA-1:cds;Parent=Msa1051680-mRNA-1
chr7_2 three_prime_UTR 19125616 19125800 19125616 ID=Msa1051680-mRNA-1:three_prime_utr;Parent=Msa1051680-mRNA-1
Gene Sequence

>Msa1051680

ATGATTATGGTGTGTAGTTCCATTAGCAGCACACAATCACAAACTTTGAACTCAGTTTCACCTTTGACTTCTTTGTCACATAGAAGAATCTATGTTCCAAATTCAGTTACTAAGGTTGTTGGAATTGGAAGAAGAAGAGACAGAAAATGGAATATTAGAGTTAATAACAGTGGTGAAAGTAATTCAGTTACAACAACTACCACACACTTTGATGATAACAAGGTTGTAGATTCAGCTTCAACAGTGGTGAGAAATTTCTATGAGGGAATTAATGCACATAATGTTGATTCAGTACAATATCTTATCTCTGAAAATTGTGTGTATGAGGACCTTGTCTTTCCACGTCCATTTGTGGGTCGTAAGGAAATTATAGAGTTCTTCAAAAAGTTCACTGAGTCTACCAGCAAGGATCTGCAGTTTGTTATTGATGATTTGTCTACGGAGGATTCATCATCTGTTGGGGTGATTTGGCATTTAGAATGGAAAGGAAAGCCCTTTCCCTTTAGCAAAGGATGCAGTTTTTATCGTTTGGAAGTGATCAATGGCAAGAGACAGATCACTCATTTGAAGGTGGTTTTGTTCGCTTGGAAAACTATACAAAATCGGTTACCAGCAAAGGACAACCTTGTTAAGCGTGGAATAATTGGAGAGGACACTCATTTGTGTAGTGCAGGGTCTGAATTCGTTGAATCTGTGAGCCACTTGTTATTGAAGTCCGTTTCGAGAGCTAGGAATCAAGTGATTTTTCATGACAAAGGTGTTTCAATTGAAGCAATTCTTGAACAGTCTAAAATGCTGCCATGGAATTGGTTGCAAGCTAAAGCTAATAGTTGTATTCATTCTATTTCTCAATGGTTCACTTGTTTAGGTTTGGTGTGTAATGGCCGAGTGTTCTGGAACACCACTGTTTTTTTCCCTGCGTCTCTAGGCAGTGATAAAGAGTGTGACATGGCTTCTTCAACGATTTCCTCAGTTGGCAGACCGATTATAGCAAAAGCTCTACATTATTTTGGAAAGGGCATGTCCCATATTTCTCCTTTACACTAG

Protein sequence

>Msa1051680

MIMVCSSISSTQSQTLNSVSPLTSLSHRRIYVPNSVTKVVGIGRRRDRKWNIRVNNSGESNSVTTTTTHFDDNKVVDSASTVVRNFYEGINAHNVDSVQYLISENCVYEDLVFPRPFVGRKEIIEFFKKFTESTSKDLQFVIDDLSTEDSSSVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITHLKVVLFAWKTIQNRLPAKDNLVKRGIIGEDTHLCSAGSEFVESVSHLLLKSVSRARNQVIFHDKGVSIEAILEQSKMLPWNWLQAKANSCIHSISQWFTCLGLVCNGRVFWNTTVFFPASLGSDKECDMASSTISSVGRPIIAKALHYFGKGMSHISPLH*