Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120380 | XP_013468001.2 | 90.691 | 376 | 12 | 2 | 1 | 353 | 26 | 401 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120380 | A0A396JQT9 | 90.691 | 376 | 12 | 2 | 1 | 353 | 26 | 401 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0120380 | -0.814903 | 1.215612e-51 | -8.615850e-47 |
| Msa0120380 | Msa0159750 | -0.810267 | 1.254587e-50 | -8.615850e-47 |
| Msa0120380 | Msa0163630 | 0.968024 | 4.310321e-128 | -8.615850e-47 |
| Msa0120380 | Msa0197940 | 0.825989 | 3.470033e-54 | -8.615850e-47 |
| Msa0120380 | Msa0223100 | -0.821510 | 3.885856e-53 | -8.615850e-47 |
| Msa0120380 | Msa0223290 | -0.818244 | 2.168823e-52 | -8.615850e-47 |
| Msa0120380 | Msa0252180 | -0.818047 | 2.403412e-52 | -8.615850e-47 |
| Msa0120380 | Msa0265210 | -0.819627 | 1.051822e-52 | -8.615850e-47 |
| Msa0120380 | Msa0271280 | 0.809250 | 2.076068e-50 | -8.615850e-47 |
| Msa0120380 | Msa0288240 | -0.809089 | 2.247949e-50 | -8.615850e-47 |
| Msa0120380 | Msa0288330 | -0.807687 | 4.474922e-50 | -8.615850e-47 |
| Msa0120380 | Msa0326670 | -0.805447 | 1.329319e-49 | -8.615850e-47 |
| Msa0120380 | Msa0340550 | -0.800957 | 1.129414e-48 | -8.615850e-47 |
| Msa0120380 | Msa0377280 | -0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0120380 | Msa0419620 | 0.826107 | 3.252784e-54 | -8.615850e-47 |
| Msa0120380 | Msa0482680 | -0.803193 | 3.918202e-49 | -8.615850e-47 |
| Msa0120380 | Msa0511720 | 0.818483 | 1.914357e-52 | -8.615850e-47 |
| Msa0120380 | Msa0553220 | 0.800375 | 1.484553e-48 | -8.615850e-47 |
| Msa0120380 | Msa0562300 | 0.813535 | 2.437059e-51 | -8.615850e-47 |
| Msa0120380 | Msa0579340 | -0.801266 | 9.763380e-49 | -8.615850e-47 |
| Msa0120380 | Msa0647450 | 0.824259 | 8.892189e-54 | -8.615850e-47 |
| Msa0120380 | Msa0655660 | 0.831496 | 1.615268e-55 | -8.615850e-47 |
| Msa0120380 | Msa0899700 | -0.806543 | 7.817815e-50 | -8.615850e-47 |
| Msa0120380 | Msa1130210 | 0.806352 | 8.575688e-50 | -8.615850e-47 |
| Msa0120380 | Msa1245120 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
| Msa0120380 | Msa1335720 | -0.808192 | 3.495163e-50 | -8.615850e-47 |
| Msa0120380 | Msa1335970 | 0.817005 | 4.127209e-52 | -8.615850e-47 |
| Msa0120380 | Msa1388790 | 0.823438 | 1.385105e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120380 | MtrunA17_Chr1g0178741 | 90.691 | 376 | 12 | 2 | 1 | 353 | 26 | 401 | 0.0 | 690 |
| Msa0120380 | MtrunA17_Chr1g0178721 | 87.766 | 376 | 23 | 2 | 1 | 353 | 1 | 376 | 0.0 | 670 |
| Msa0120380 | MtrunA17_Chr1g0171181 | 52.059 | 340 | 112 | 3 | 33 | 350 | 1 | 311 | 4.24e-122 | 354 |
| Msa0120380 | MtrunA17_Chr2g0321341 | 47.801 | 341 | 149 | 5 | 33 | 350 | 2 | 336 | 4.96e-116 | 340 |
| Msa0120380 | MtrunA17_Chr2g0321351 | 45.092 | 326 | 144 | 7 | 51 | 350 | 28 | 344 | 4.34e-93 | 282 |
| Msa0120380 | MtrunA17_Chr4g0026421 | 42.450 | 351 | 161 | 8 | 33 | 350 | 1 | 343 | 1.01e-89 | 273 |
| Msa0120380 | MtrunA17_Chr3g0136021 | 42.105 | 304 | 143 | 6 | 73 | 350 | 130 | 426 | 1.42e-77 | 244 |
| Msa0120380 | MtrunA17_Chr4g0029971 | 26.761 | 355 | 192 | 10 | 38 | 334 | 86 | 430 | 3.62e-29 | 117 |
| Msa0120380 | MtrunA17_Chr7g0263721 | 26.023 | 342 | 189 | 9 | 67 | 352 | 151 | 484 | 6.08e-27 | 111 |
| Msa0120380 | MtrunA17_Chr2g0321371 | 50.980 | 51 | 25 | 0 | 284 | 334 | 1 | 51 | 8.05e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120380 | AT3G48410.1 | 59.452 | 365 | 123 | 3 | 8 | 350 | 10 | 371 | 5.36e-156 | 443 |
| Msa0120380 | AT3G48410.2 | 59.452 | 365 | 123 | 3 | 8 | 350 | 52 | 413 | 1.16e-155 | 444 |
| Msa0120380 | AT2G36290.1 | 58.453 | 349 | 119 | 3 | 31 | 353 | 15 | 363 | 6.29e-151 | 429 |
| Msa0120380 | AT2G36290.2 | 58.213 | 347 | 119 | 3 | 33 | 353 | 3 | 349 | 3.80e-149 | 424 |
| Msa0120380 | AT1G74300.1 | 59.574 | 329 | 109 | 3 | 46 | 350 | 16 | 344 | 1.22e-143 | 410 |
| Msa0120380 | AT1G74280.1 | 56.707 | 328 | 118 | 3 | 47 | 350 | 34 | 361 | 5.49e-135 | 389 |
| Msa0120380 | AT1G74290.1 | 51.923 | 364 | 143 | 5 | 9 | 346 | 1 | 358 | 5.02e-131 | 379 |
| Msa0120380 | AT3G54240.1 | 48.538 | 342 | 154 | 2 | 33 | 352 | 5 | 346 | 3.35e-123 | 358 |
| Msa0120380 | AT5G22460.2 | 46.041 | 341 | 157 | 4 | 33 | 350 | 2 | 338 | 6.36e-109 | 322 |
| Msa0120380 | AT5G22460.3 | 46.041 | 341 | 157 | 4 | 33 | 350 | 2 | 338 | 6.36e-109 | 322 |
| Msa0120380 | AT5G22460.1 | 46.041 | 341 | 157 | 4 | 33 | 350 | 2 | 338 | 6.36e-109 | 322 |
| Msa0120380 | AT1G74300.2 | 56.735 | 245 | 83 | 2 | 129 | 350 | 1 | 245 | 1.24e-96 | 287 |
| Msa0120380 | AT3G03240.1 | 43.421 | 304 | 138 | 7 | 71 | 348 | 35 | 330 | 9.36e-81 | 249 |
| Msa0120380 | AT3G03230.1 | 43.234 | 303 | 139 | 6 | 71 | 348 | 35 | 329 | 1.48e-77 | 241 |
| Msa0120380 | AT3G44510.2 | 41.694 | 307 | 143 | 6 | 73 | 350 | 8 | 307 | 3.23e-76 | 238 |
| Msa0120380 | AT1G08310.2 | 40.129 | 309 | 152 | 6 | 68 | 350 | 5 | 306 | 3.52e-73 | 230 |
| Msa0120380 | AT1G08310.1 | 40.453 | 309 | 148 | 7 | 68 | 350 | 5 | 303 | 8.19e-72 | 226 |
| Msa0120380 | AT3G44510.3 | 41.395 | 215 | 96 | 4 | 73 | 262 | 8 | 217 | 6.85e-47 | 159 |
| Msa0120380 | AT1G08310.3 | 42.647 | 204 | 90 | 4 | 68 | 249 | 5 | 203 | 2.56e-45 | 155 |
| Msa0120380 | AT3G44510.1 | 37.433 | 187 | 105 | 4 | 172 | 350 | 19 | 201 | 1.02e-36 | 132 |
| Msa0120380 | AT3G44510.5 | 37.433 | 187 | 105 | 4 | 172 | 350 | 19 | 201 | 1.02e-36 | 132 |
| Msa0120380 | AT3G44510.4 | 37.433 | 187 | 105 | 4 | 172 | 350 | 19 | 201 | 1.02e-36 | 132 |
| Msa0120380 | AT3G09690.1 | 26.959 | 319 | 176 | 8 | 68 | 334 | 160 | 473 | 1.91e-25 | 107 |
| Msa0120380 | AT3G09690.2 | 26.959 | 319 | 176 | 8 | 68 | 334 | 160 | 473 | 1.91e-25 | 107 |
| Msa0120380 | AT5G02970.1 | 23.836 | 365 | 221 | 7 | 40 | 351 | 129 | 489 | 1.41e-23 | 102 |
Find 128 sgRNAs with CRISPR-Local
Find 438 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATATTGGATTTGGAAAA+TGG | 0.113721 | 1_3:-45079396 | Msa0120380:CDS |
| CCATCTCTTAGTTTGATTCT+TGG | 0.143000 | 1_3:+45081877 | None:intergenic |
| ATCAGGAGAGCCACATATTT+TGG | 0.144502 | 1_3:+45081918 | None:intergenic |
| CAGGATGTTGTCAAGGAATT+AGG | 0.172204 | 1_3:-45081641 | Msa0120380:CDS |
| CCAGTAATCACACTAATAAT+TGG | 0.177238 | 1_3:+45080975 | None:intergenic |
| CACTAGCAGTGTTGTTTATT+GGG | 0.228617 | 1_3:-45081981 | Msa0120380:CDS |
| AGAGGATTTGTTGGCCCTTC+TGG | 0.231299 | 1_3:+45084409 | None:intergenic |
| TTATACTTTGCTGTGTCTTT+AGG | 0.233495 | 1_3:+45081823 | None:intergenic |
| TTGATTCTTGGTGCTGTTAT+AGG | 0.241502 | 1_3:+45081889 | None:intergenic |
| ACACTAGCAGTGTTGTTTAT+TGG | 0.245373 | 1_3:-45081982 | Msa0120380:CDS |
| CGTGACTTGAATATTGGATT+TGG | 0.273224 | 1_3:-45079403 | Msa0120380:CDS |
| TCTTGTTTCGAAAGGATATC+TGG | 0.273570 | 1_3:+45080948 | None:intergenic |
| GCAAGGAGATGAAGATATTA+TGG | 0.279264 | 1_3:-45079311 | Msa0120380:CDS |
| ATGCTCTTTAATGTACGATT+TGG | 0.280505 | 1_3:+45081566 | None:intergenic |
| CCAATTATTAGTGTGATTAC+TGG | 0.288987 | 1_3:-45080975 | Msa0120380:CDS |
| GCTGGCAGGTGCAGCGCTCT+TGG | 0.294662 | 1_3:-45081147 | Msa0120380:intron |
| ATGAAGGTTCCGTTCATCTT+TGG | 0.298744 | 1_3:-45079333 | Msa0120380:CDS |
| AGTACCAATGACATAGAATT+TGG | 0.298887 | 1_3:+45081499 | None:intergenic |
| CTCCACCGTGACTTGAATAT+TGG | 0.300790 | 1_3:-45079409 | Msa0120380:CDS |
| GGCATTTATTATCTCCGTTT+CGG | 0.317984 | 1_3:-45079111 | Msa0120380:three_prime_UTR |
| TGAACGGAACCTTCATTGTT+TGG | 0.318164 | 1_3:+45079340 | None:intergenic |
| GAACCTTCATTGTTTGGAAA+TGG | 0.319981 | 1_3:+45079346 | None:intergenic |
| GCTTGCTGATCAATTGGAAT+TGG | 0.321990 | 1_3:-45081525 | Msa0120380:CDS |
| TGGCCCCAGTCGTCAACTTC+TGG | 0.327316 | 1_3:-45081127 | Msa0120380:CDS |
| AGCAAGCTCTTCTATATCTA+AGG | 0.347016 | 1_3:+45081541 | None:intergenic |
| ATGTAATTTCCATTGGGAAT+AGG | 0.350187 | 1_3:+45081070 | None:intergenic |
| AGGATGTTGTCAAGGAATTA+GGG | 0.352902 | 1_3:-45081640 | Msa0120380:CDS |
| TATAGAAAATTACGGGTGAT+AGG | 0.365312 | 1_3:+45081743 | None:intergenic |
| CTTGCTGATCAATTGGAATT+GGG | 0.366848 | 1_3:-45081524 | Msa0120380:CDS |
| TACCATGAACTTCCAGGTTC+TGG | 0.368062 | 1_3:-45079238 | Msa0120380:CDS |
| GCTTCGGCCGTTAAGTTTGC+AGG | 0.370202 | 1_3:+45081092 | None:intergenic |
| CCGGCTATCCAGGCCAGCTT+TGG | 0.389990 | 1_3:-45079132 | Msa0120380:three_prime_UTR |
| TCCTTTGATAGACCTGGTTA+TGG | 0.390537 | 1_3:-45081605 | Msa0120380:CDS |
| TGTTTATTGGGGTTCTAGCA+TGG | 0.403951 | 1_3:-45081969 | Msa0120380:CDS |
| ACACGCCATGGCTAACATAC+TGG | 0.404122 | 1_3:-45081019 | Msa0120380:CDS |
| GAATATTGGATTTGGAAAAT+GGG | 0.404775 | 1_3:-45079395 | Msa0120380:CDS |
| TTTGAGATGTATTTGGTGAT+AGG | 0.406630 | 1_3:-45078947 | Msa0120380:three_prime_UTR |
| AGAAGAGCTTGCTGATCAAT+TGG | 0.413236 | 1_3:-45081531 | Msa0120380:CDS |
| GTTCACTACCATGAACTTCC+AGG | 0.414844 | 1_3:-45079244 | Msa0120380:CDS |
| AGAGCTTGTAACTAAGTTGA+TGG | 0.419219 | 1_3:-45080922 | Msa0120380:CDS |
| AATAAATGCCAAAGCTGGCC+TGG | 0.424078 | 1_3:+45079124 | None:intergenic |
| GTTAAGTTTGCAGGAAGATC+AGG | 0.425710 | 1_3:+45081101 | None:intergenic |
| GGAAGCATCCTCACGGGAAA+AGG | 0.429795 | 1_3:+45078891 | None:intergenic |
| AAAATGGGAATATACTCCTT+TGG | 0.430264 | 1_3:-45079380 | Msa0120380:CDS |
| GGCCACCTCTTCCCTCATGC+TGG | 0.430633 | 1_3:-45079217 | Msa0120380:CDS |
| TCCATGGTTTCAGCAGTTGC+AGG | 0.431477 | 1_3:-45081789 | Msa0120380:CDS |
| GTTTATTGGGGTTCTAGCAT+GGG | 0.432543 | 1_3:-45081968 | Msa0120380:CDS |
| TTTCCATTGGGAATAGGCTT+CGG | 0.432983 | 1_3:+45081076 | None:intergenic |
| AAAGACAGATCGGGGTGATC+TGG | 0.433307 | 1_3:-45084614 | Msa0120380:five_prime_UTR |
| GGGTCCAAATTCTATGTCAT+TGG | 0.433593 | 1_3:-45081503 | Msa0120380:intron |
| CAGTAATCACACTAATAATT+GGG | 0.436521 | 1_3:+45080976 | None:intergenic |
| CAGAGACAGATCGACAAGTA+AGG | 0.438470 | 1_3:+45084554 | None:intergenic |
| CTGAAAAGAAGAGGATTTGT+TGG | 0.442436 | 1_3:+45084400 | None:intergenic |
| ATTGGTCATGTAATTTCCAT+TGG | 0.443960 | 1_3:+45081063 | None:intergenic |
| GCTGTTATAGGCGGCCCATC+AGG | 0.447054 | 1_3:+45081901 | None:intergenic |
| ACTAAGAGATGGAAGGCATT+TGG | 0.447348 | 1_3:-45081866 | Msa0120380:CDS |
| GGGAAGAGGTGGCCAGAACC+TGG | 0.461101 | 1_3:+45079226 | None:intergenic |
| GTATTGTTCACCGGCTATCC+AGG | 0.463790 | 1_3:-45079142 | Msa0120380:three_prime_UTR |
| CCAAAGCTGGCCTGGATAGC+CGG | 0.463929 | 1_3:+45079132 | None:intergenic |
| TTGGTCATGTAATTTCCATT+GGG | 0.464250 | 1_3:+45081064 | None:intergenic |
| GCCTGCAACTGCTGAAACCA+TGG | 0.467218 | 1_3:+45081788 | None:intergenic |
| AATCCATTTCCAAACAATGA+AGG | 0.474443 | 1_3:-45079349 | Msa0120380:CDS |
| CTTTAATGTACGATTTGGAT+CGG | 0.475587 | 1_3:+45081571 | None:intergenic |
| TTTAATGTACGATTTGGATC+GGG | 0.479858 | 1_3:+45081572 | None:intergenic |
| TGATCTTCCTGCAAACTTAA+CGG | 0.480686 | 1_3:-45081099 | Msa0120380:CDS |
| ATAGAAAATTACGGGTGATA+GGG | 0.484130 | 1_3:+45081744 | None:intergenic |
| TTGTCAGGTAGCCTAGTGGC+AGG | 0.493560 | 1_3:+45084658 | None:intergenic |
| GGCCAGAACCTGGAAGTTCA+TGG | 0.494202 | 1_3:+45079236 | None:intergenic |
| AAAATATGTGGCTCTCCTGA+TGG | 0.499572 | 1_3:-45081916 | Msa0120380:CDS |
| TCAGTTTGAATTCTCCGAAA+CGG | 0.505144 | 1_3:+45079097 | None:intergenic |
| ATGTATCGTTGTAGTGTGAC+AGG | 0.520150 | 1_3:+45079286 | None:intergenic |
| ATGGAAATTACATGACCAAT+GGG | 0.522449 | 1_3:-45081060 | Msa0120380:CDS |
| GGCCACCAGAAGTTGACGAC+TGG | 0.528373 | 1_3:+45081122 | None:intergenic |
| GAGATAATAAATGCCAAAGC+TGG | 0.529286 | 1_3:+45079119 | None:intergenic |
| TATAAAATCATCTATGTCCA+TGG | 0.533222 | 1_3:-45081805 | Msa0120380:CDS |
| GCCACCAGAAGTTGACGACT+GGG | 0.534398 | 1_3:+45081123 | None:intergenic |
| TAGGCTTCTGTATTGTTCAC+CGG | 0.534932 | 1_3:-45079151 | Msa0120380:three_prime_UTR |
| CACCTCTTCCCTCATGCTGG+TGG | 0.541190 | 1_3:-45079214 | Msa0120380:CDS |
| AAATATGTGGCTCTCCTGAT+GGG | 0.544519 | 1_3:-45081915 | Msa0120380:CDS |
| GCTCTTTGTCTTGTTTCGAA+AGG | 0.544942 | 1_3:+45080940 | None:intergenic |
| CAAATCCAATATTCAAGTCA+CGG | 0.545788 | 1_3:+45079404 | None:intergenic |
| GAGCAACACGAAGCGCCCAT+TGG | 0.547807 | 1_3:+45081045 | None:intergenic |
| CCAAGAATCAAACTAAGAGA+TGG | 0.548477 | 1_3:-45081877 | Msa0120380:CDS |
| ATTGTATCCTTTGATAGACC+TGG | 0.548650 | 1_3:-45081611 | Msa0120380:CDS |
| TCTCTCACAACAATGGCCAC+TGG | 0.550600 | 1_3:-45084473 | Msa0120380:exon |
| ATCTCCTTGCCAAAGATGAA+CGG | 0.553409 | 1_3:+45079324 | None:intergenic |
| ACTAGCAGTGTTGTTTATTG+GGG | 0.557315 | 1_3:-45081980 | Msa0120380:CDS |
| CCCCAGTCGTCAACTTCTGG+TGG | 0.560902 | 1_3:-45081124 | Msa0120380:CDS |
| CACCACCAGCATGAGGGAAG+AGG | 0.561504 | 1_3:+45079212 | None:intergenic |
| AATGGAAATTACATGACCAA+TGG | 0.565003 | 1_3:-45081061 | Msa0120380:CDS |
| TTGCTGATCAATTGGAATTG+GGG | 0.565301 | 1_3:-45081523 | Msa0120380:CDS |
| ATCAGCTGGAAGCATCCTCA+CGG | 0.571098 | 1_3:+45078884 | None:intergenic |
| CAGCTCGTTCTCACACCAGA+AGG | 0.572309 | 1_3:-45084424 | Msa0120380:CDS |
| ACATCGCGCAAAACCTTCCG+TGG | 0.574053 | 1_3:-45079267 | Msa0120380:CDS |
| GTGAATTCTAACCTGCCACT+AGG | 0.575689 | 1_3:-45084669 | Msa0120380:five_prime_UTR |
| AGAGACAGATCGACAAGTAA+GGG | 0.579291 | 1_3:+45084555 | None:intergenic |
| TGAAGGAAGCTGAAAAGAAG+AGG | 0.580727 | 1_3:+45084391 | None:intergenic |
| ATTCTTGGTGCTGTTATAGG+CGG | 0.580740 | 1_3:+45081892 | None:intergenic |
| GGTTCCGTTCATCTTTGGCA+AGG | 0.581480 | 1_3:-45079328 | Msa0120380:CDS |
| CGGCCGAAGCCTATTCCCAA+TGG | 0.581823 | 1_3:-45081079 | Msa0120380:CDS |
| CCAAAGCAGGTAAGACAACA+AGG | 0.584374 | 1_3:-45079445 | Msa0120380:intron |
| CAATATTCAAGTCACGGTGG+AGG | 0.590667 | 1_3:+45079410 | None:intergenic |
| GCTCCTCCTCCCAAAATATG+TGG | 0.590810 | 1_3:-45081928 | Msa0120380:CDS |
| ACTGGTGGAACACTCAAAGA+TGG | 0.597899 | 1_3:-45081001 | Msa0120380:CDS |
| TTCCACCAGTATGTTAGCCA+TGG | 0.599195 | 1_3:+45081014 | None:intergenic |
| CTTCTCTTCTCTCACAACAA+TGG | 0.602036 | 1_3:-45084480 | Msa0120380:exon |
| TCAGCTGGAAGCATCCTCAC+GGG | 0.606316 | 1_3:+45078885 | None:intergenic |
| TCCATAACCAGGTCTATCAA+AGG | 0.608223 | 1_3:+45081604 | None:intergenic |
| CACCAGCATGAGGGAAGAGG+TGG | 0.608346 | 1_3:+45079215 | None:intergenic |
| GGACAATAAAGAGAATTATG+TGG | 0.612355 | 1_3:-45080901 | Msa0120380:intron |
| CGCCATGGCTAACATACTGG+TGG | 0.613077 | 1_3:-45081016 | Msa0120380:CDS |
| CATGGTAGTGAACCCACGGA+AGG | 0.617397 | 1_3:+45079254 | None:intergenic |
| AATTACGGGTGATAGGGTGT+TGG | 0.623286 | 1_3:+45081750 | None:intergenic |
| TCACTCACACCACCAGCATG+AGG | 0.623856 | 1_3:+45079205 | None:intergenic |
| GAATCAAACTAAGAGATGGA+AGG | 0.623906 | 1_3:-45081873 | Msa0120380:CDS |
| GGATCACTTTCTCCATAACC+AGG | 0.628496 | 1_3:+45081593 | None:intergenic |
| CACTCACACCACCAGCATGA+GGG | 0.635948 | 1_3:+45079206 | None:intergenic |
| CATCCTCACGGGAAAAGGTG+AGG | 0.636564 | 1_3:+45078896 | None:intergenic |
| AGCTCGTTCTCACACCAGAA+GGG | 0.638872 | 1_3:-45084423 | Msa0120380:CDS |
| CATTTGGCATACAAAGAGCA+TGG | 0.641716 | 1_3:-45081850 | Msa0120380:CDS |
| AGTTCATGGTAGTGAACCCA+CGG | 0.642351 | 1_3:+45079250 | None:intergenic |
| GTGTTGCTCACTACACGCCA+TGG | 0.657333 | 1_3:-45081031 | Msa0120380:CDS |
| GCTTGTGCAGGATGTTGTCA+AGG | 0.658123 | 1_3:-45081648 | Msa0120380:intron |
| CATCGCGCAAAACCTTCCGT+GGG | 0.671853 | 1_3:-45079266 | Msa0120380:CDS |
| GGATGTTGTCAAGGAATTAG+GGG | 0.673580 | 1_3:-45081639 | Msa0120380:CDS |
| CAGTTGCAGGCATGACGCTG+TGG | 0.675923 | 1_3:-45081776 | Msa0120380:CDS |
| CCACCAGAAGTTGACGACTG+GGG | 0.688382 | 1_3:+45081124 | None:intergenic |
| ATCCAATATTCAAGTCACGG+TGG | 0.730301 | 1_3:+45079407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATAATTTTTCTATTC+TGG | + | chr1_3:45080825-45080844 | None:intergenic | 10.0% |
| !! | AAATGTAATATAGAAAATTA+CGG | + | chr1_3:45081825-45081844 | None:intergenic | 10.0% |
| !!! | TAAATTTATAACTTTTTATG+TGG | - | chr1_3:45084086-45084105 | Msa0120380:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTGTC+AGG | + | chr1_3:45078917-45078936 | None:intergenic | 15.0% |
| !! | GTTACAAGAAAAAAAAAATT+AGG | - | chr1_3:45079297-45079316 | Msa0120380:CDS | 15.0% |
| !!! | TGTATTTTGATATTTACATA+TGG | - | chr1_3:45081469-45081488 | Msa0120380:intron | 15.0% |
| !! | ACAATCTTAAACATAAATTA+TGG | + | chr1_3:45081503-45081522 | None:intergenic | 15.0% |
| !! | AATGTAATATAGAAAATTAC+GGG | + | chr1_3:45081824-45081843 | None:intergenic | 15.0% |
| !! | ATAGAAATAGTTTATACATA+AGG | - | chr1_3:45083155-45083174 | Msa0120380:intron | 15.0% |
| !! | AAATAATACACAGAATAATA+CGG | - | chr1_3:45083407-45083426 | Msa0120380:intron | 15.0% |
| !!! | TTTTAGCTTTCAAAGTTTAA+TGG | - | chr1_3:45079244-45079263 | Msa0120380:CDS | 20.0% |
| !!! | TTTAGCTTTCAAAGTTTAAT+GGG | - | chr1_3:45079245-45079264 | Msa0120380:CDS | 20.0% |
| !!! | AGCAAAAAAAATAAAAGTGT+TGG | + | chr1_3:45080852-45080871 | None:intergenic | 20.0% |
| !! | AATTAAAAATGTAATCCTGA+AGG | - | chr1_3:45081030-45081049 | Msa0120380:CDS | 20.0% |
| !! | TCAAGATTAAAAACAATTGT+TGG | + | chr1_3:45081375-45081394 | None:intergenic | 20.0% |
| !! | AACTACAAATAAGCTAAATA+AGG | + | chr1_3:45082354-45082373 | None:intergenic | 20.0% |
| !!! | TCAAAATTGACTTTGAATTT+TGG | - | chr1_3:45082776-45082795 | Msa0120380:intron | 20.0% |
| !! | AAAAATAAACACATGTATCA+CGG | + | chr1_3:45082882-45082901 | None:intergenic | 20.0% |
| !! | AATAATTTGAAAACAGCTTA+TGG | + | chr1_3:45083061-45083080 | None:intergenic | 20.0% |
| !! | AATCATCTAAAAGATTGATT+CGG | + | chr1_3:45083576-45083595 | None:intergenic | 20.0% |
| !!! | TCAATCTTTTAGATGATTAT+TGG | - | chr1_3:45083578-45083597 | Msa0120380:intron | 20.0% |
| !!! | ATAATATGTCTTGTTTCAAT+TGG | - | chr1_3:45084037-45084056 | Msa0120380:intron | 20.0% |
| !!! | TTTTAAAATTTACAGAAGCT+GGG | - | chr1_3:45084579-45084598 | Msa0120380:five_prime_UTR | 20.0% |
| ! | AAACAAACAAAAAGACAGAT+CGG | - | chr1_3:45078933-45078952 | Msa0120380:three_prime_UTR | 25.0% |
| ! | TGAATATAGAATGATGAAGA+TGG | - | chr1_3:45079321-45079340 | Msa0120380:CDS | 25.0% |
| ! | CTTTGTCTGTTATGAAAAAT+TGG | - | chr1_3:45079662-45079681 | Msa0120380:intron | 25.0% |
| !!! | AAATTGGTTTTGCAGTATTA+TGG | - | chr1_3:45079678-45079697 | Msa0120380:intron | 25.0% |
| !!! | ATATTGCTACTTTTTTCCTA+GGG | + | chr1_3:45079871-45079890 | None:intergenic | 25.0% |
| !!! | AATATTGCTACTTTTTTCCT+AGG | + | chr1_3:45079872-45079891 | None:intergenic | 25.0% |
| !!! | AAGTAGCAATATTTTTAGAG+CGG | - | chr1_3:45079879-45079898 | Msa0120380:intron | 25.0% |
| ! | AATATCAATGTCATTGAGAA+GGG | - | chr1_3:45080112-45080131 | Msa0120380:intron | 25.0% |
| ! | GGTATCTTAAAATTCTTTCT+GGG | + | chr1_3:45080286-45080305 | None:intergenic | 25.0% |
| ! | TGGTATCTTAAAATTCTTTC+TGG | + | chr1_3:45080287-45080306 | None:intergenic | 25.0% |
| ! | AACTTTGGCATAAAATATCT+TGG | + | chr1_3:45080307-45080326 | None:intergenic | 25.0% |
| !!! | ACAATAAAGGTATTCATGAA+TGG | - | chr1_3:45080980-45080999 | Msa0120380:CDS | 25.0% |
| ! | TATTTGTATTCGGAAATTCA+AGG | - | chr1_3:45081087-45081106 | Msa0120380:CDS | 25.0% |
| ! | TATTTATCTGCCTTCTAATT+TGG | - | chr1_3:45081522-45081541 | Msa0120380:CDS | 25.0% |
| ! | TATAAAATCATCTATGTCCA+TGG | - | chr1_3:45081752-45081771 | Msa0120380:intron | 25.0% |
| ! | ACTTATTAGAGTTTATCTAC+TGG | - | chr1_3:45082157-45082176 | Msa0120380:intron | 25.0% |
| ! | CAGTAATCACACTAATAATT+GGG | + | chr1_3:45082584-45082603 | None:intergenic | 25.0% |
| !! | CTTTTAGATGATTGCAAAAT+TGG | - | chr1_3:45082690-45082709 | Msa0120380:intron | 25.0% |
| !!! | ATTTAGCTGATAGTTTTGAT+TGG | - | chr1_3:45082744-45082763 | Msa0120380:intron | 25.0% |
| ! | GATATTCACATAAACAATCA+CGG | + | chr1_3:45082802-45082821 | None:intergenic | 25.0% |
| ! | TGATTGTTTATGTGAATATC+AGG | - | chr1_3:45082802-45082821 | Msa0120380:intron | 25.0% |
| ! | TCTGTATTCATAAATTATCC+TGG | + | chr1_3:45083096-45083115 | None:intergenic | 25.0% |
| ! | CTAAGAAATCGAGAATAATA+AGG | + | chr1_3:45083226-45083245 | None:intergenic | 25.0% |
| ! | CTTATTATTCTCGATTTCTT+AGG | - | chr1_3:45083224-45083243 | Msa0120380:intron | 25.0% |
| !! | ATCATCTAAAAGATTGATTC+GGG | + | chr1_3:45083575-45083594 | None:intergenic | 25.0% |
| ! | TAACAACTTTCTAAATAAGC+TGG | + | chr1_3:45083638-45083657 | None:intergenic | 25.0% |
| ! | AGGGAAAATTGATAAATACA+AGG | + | chr1_3:45083722-45083741 | None:intergenic | 25.0% |
| ! | TATTATGCTCAATTGAATTG+AGG | + | chr1_3:45083968-45083987 | None:intergenic | 25.0% |
| ! | TGAATATTGGATTTGGAAAA+TGG | - | chr1_3:45084161-45084180 | Msa0120380:intron | 25.0% |
| ! | GAATATTGGATTTGGAAAAT+GGG | - | chr1_3:45084162-45084181 | Msa0120380:intron | 25.0% |
| !!! | ACTATCATTAAGTCACTTTT+AGG | - | chr1_3:45084376-45084395 | Msa0120380:intron | 25.0% |
| !!! | CTTTTAAAATTTACAGAAGC+TGG | - | chr1_3:45084578-45084597 | Msa0120380:five_prime_UTR | 25.0% |
| !!! | TGTTGATTTTGAGATGTATT+TGG | - | chr1_3:45084603-45084622 | Msa0120380:five_prime_UTR | 25.0% |
| AACAAACAAAAAGACAGATC+GGG | - | chr1_3:45078934-45078953 | Msa0120380:three_prime_UTR | 30.0% | |
| CTGTATTAGTTCAGTTAGTT+AGG | - | chr1_3:45079453-45079472 | Msa0120380:intron | 30.0% | |
| AGTATCAATCTTCAACTTGT+GGG | + | chr1_3:45079526-45079545 | None:intergenic | 30.0% | |
| AAGTATCAATCTTCAACTTG+TGG | + | chr1_3:45079527-45079546 | None:intergenic | 30.0% | |
| ATCGATACTTGTAAATGAGA+TGG | - | chr1_3:45079555-45079574 | Msa0120380:intron | 30.0% | |
| !!! | TATTGCTACTTTTTTCCTAG+GGG | + | chr1_3:45079870-45079889 | None:intergenic | 30.0% |
| CGGTTATAGTAATTCCAATT+GGG | + | chr1_3:45079924-45079943 | None:intergenic | 30.0% | |
| ACGGTTATAGTAATTCCAAT+TGG | + | chr1_3:45079925-45079944 | None:intergenic | 30.0% | |
| AATTCTTCTCTAGATCTACA+CGG | + | chr1_3:45079944-45079963 | None:intergenic | 30.0% | |
| CAATATCAATGTCATTGAGA+AGG | - | chr1_3:45080111-45080130 | Msa0120380:intron | 30.0% | |
| CTCACTTTACTTTCTATCTT+GGG | + | chr1_3:45080208-45080227 | None:intergenic | 30.0% | |
| TTTCCTTCATTGAGAGTTAA+AGG | + | chr1_3:45080615-45080634 | None:intergenic | 30.0% | |
| AGGAAATATTGGGACAATAA+AGG | - | chr1_3:45080967-45080986 | Msa0120380:CDS | 30.0% | |
| AACAACACTCTGATAACTAT+AGG | - | chr1_3:45081315-45081334 | Msa0120380:intron | 30.0% | |
| TAGCTATAAACCTCATACTA+AGG | + | chr1_3:45081413-45081432 | None:intergenic | 30.0% | |
| AATTACAATATGCTGAACAC+AGG | + | chr1_3:45081442-45081461 | None:intergenic | 30.0% | |
| GTTTGTAATGCCAAATTAGA+AGG | + | chr1_3:45081535-45081554 | None:intergenic | 30.0% | |
| ! | TTATACTTTGCTGTGTCTTT+AGG | + | chr1_3:45081737-45081756 | None:intergenic | 30.0% |
| ATAGAAAATTACGGGTGATA+GGG | + | chr1_3:45081816-45081835 | None:intergenic | 30.0% | |
| TATAGAAAATTACGGGTGAT+AGG | + | chr1_3:45081817-45081836 | None:intergenic | 30.0% | |
| ! | TTTAATGTACGATTTGGATC+GGG | + | chr1_3:45081988-45082007 | None:intergenic | 30.0% |
| ! | CTTTAATGTACGATTTGGAT+CGG | + | chr1_3:45081989-45082008 | None:intergenic | 30.0% |
| ATGCTCTTTAATGTACGATT+TGG | + | chr1_3:45081994-45082013 | None:intergenic | 30.0% | |
| AGTACCAATGACATAGAATT+TGG | + | chr1_3:45082061-45082080 | None:intergenic | 30.0% | |
| ATAAAAACTTGTGAGACTCT+TGG | - | chr1_3:45082181-45082200 | Msa0120380:intron | 30.0% | |
| TAAAAACTTGTGAGACTCTT+GGG | - | chr1_3:45082182-45082201 | Msa0120380:intron | 30.0% | |
| TGCTTTGATATAAGCTATCT+TGG | + | chr1_3:45082273-45082292 | None:intergenic | 30.0% | |
| ATGTAATTTCCATTGGGAAT+AGG | + | chr1_3:45082490-45082509 | None:intergenic | 30.0% | |
| TTGGTCATGTAATTTCCATT+GGG | + | chr1_3:45082496-45082515 | None:intergenic | 30.0% | |
| ATTGGTCATGTAATTTCCAT+TGG | + | chr1_3:45082497-45082516 | None:intergenic | 30.0% | |
| AATGGAAATTACATGACCAA+TGG | - | chr1_3:45082496-45082515 | Msa0120380:intron | 30.0% | |
| ATGGAAATTACATGACCAAT+GGG | - | chr1_3:45082497-45082516 | Msa0120380:intron | 30.0% | |
| CCAGTAATCACACTAATAAT+TGG | + | chr1_3:45082585-45082604 | None:intergenic | 30.0% | |
| CCAATTATTAGTGTGATTAC+TGG | - | chr1_3:45082582-45082601 | Msa0120380:intron | 30.0% | |
| GGACAATAAAGAGAATTATG+TGG | - | chr1_3:45082656-45082675 | Msa0120380:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr1_3:45082975-45082994 | None:intergenic | 30.0% | |
| ! | AAAACCACAATAGTTTGTCT+TGG | - | chr1_3:45083366-45083385 | Msa0120380:intron | 30.0% |
| !!! | AGTTTTTCAAGGAACCATAA+GGG | + | chr1_3:45083494-45083513 | None:intergenic | 30.0% |
| !!! | AAGTTTTTCAAGGAACCATA+AGG | + | chr1_3:45083495-45083514 | None:intergenic | 30.0% |
| ! | TTATGCCAAGAAGTTTTTCA+AGG | + | chr1_3:45083505-45083524 | None:intergenic | 30.0% |
| ATAACGAGGTAATCAATCTT+CGG | - | chr1_3:45083521-45083540 | Msa0120380:intron | 30.0% | |
| CAAATCCAATATTCAAGTCA+CGG | + | chr1_3:45084156-45084175 | None:intergenic | 30.0% | |
| AAAATGGGAATATACTCCTT+TGG | - | chr1_3:45084177-45084196 | Msa0120380:intron | 30.0% | |
| !! | AATGGATTTTGAAGATCCAA+AGG | + | chr1_3:45084196-45084215 | None:intergenic | 30.0% |
| AATCCATTTCCAAACAATGA+AGG | - | chr1_3:45084208-45084227 | Msa0120380:intron | 30.0% | |
| ! | TTTGAGATGTATTTGGTGAT+AGG | - | chr1_3:45084610-45084629 | Msa0120380:five_prime_UTR | 30.0% |
| ACAAACAAAAAGACAGATCG+GGG | - | chr1_3:45078935-45078954 | Msa0120380:three_prime_UTR | 35.0% | |
| ! | AATTTTTCTGCTAACTCCAG+TGG | + | chr1_3:45079103-45079122 | None:intergenic | 35.0% |
| CTGAAAAGAAGAGGATTTGT+TGG | + | chr1_3:45079160-45079179 | None:intergenic | 35.0% | |
| CTTTGAGCAAGAAAAGAGAA+AGG | + | chr1_3:45079217-45079236 | None:intergenic | 35.0% | |
| !! | GTTCTTCAGCTTTAGAATTG+TGG | - | chr1_3:45079275-45079294 | Msa0120380:CDS | 35.0% |
| TATCAATCTTCAACTTGTGG+GGG | + | chr1_3:45079524-45079543 | None:intergenic | 35.0% | |
| GTATCAATCTTCAACTTGTG+GGG | + | chr1_3:45079525-45079544 | None:intergenic | 35.0% | |
| !! | TGGTTTTGCAGTATTATGGA+AGG | - | chr1_3:45079682-45079701 | Msa0120380:intron | 35.0% |
| TAAGTCAGTAAGTGAGTAAC+TGG | - | chr1_3:45079760-45079779 | Msa0120380:intron | 35.0% | |
| TGTAGAATGCCATGTAATCA+AGG | - | chr1_3:45079841-45079860 | Msa0120380:intron | 35.0% | |
| TATAGTAATTCCAATTGGGC+TGG | + | chr1_3:45079920-45079939 | None:intergenic | 35.0% | |
| TTGAAAGGTTTACTAGTCCA+GGG | + | chr1_3:45079983-45080002 | None:intergenic | 35.0% | |
| TGCTCAAATCACTACTTGAA+AGG | + | chr1_3:45079998-45080017 | None:intergenic | 35.0% | |
| CCTCACTTTACTTTCTATCT+TGG | + | chr1_3:45080209-45080228 | None:intergenic | 35.0% | |
| CCAAGATAGAAAGTAAAGTG+AGG | - | chr1_3:45080206-45080225 | Msa0120380:intron | 35.0% | |
| TTATGCCAAAGTTGTTGTCA+AGG | - | chr1_3:45080314-45080333 | Msa0120380:intron | 35.0% | |
| AGTATCCTTGACAACAACTT+TGG | + | chr1_3:45080322-45080341 | None:intergenic | 35.0% | |
| ATAAATGAGGAGGGTTGTAT+AGG | - | chr1_3:45080396-45080415 | Msa0120380:intron | 35.0% | |
| ATAGGAGTAAGTTGTGATGT+TGG | - | chr1_3:45080414-45080433 | Msa0120380:intron | 35.0% | |
| GAATGCTAAGCTCAAAAGTA+AGG | - | chr1_3:45080468-45080487 | Msa0120380:intron | 35.0% | |
| TAATACAAGCGAGTAGAGAA+TGG | + | chr1_3:45080510-45080529 | None:intergenic | 35.0% | |
| CTTCATTGAGAGTTAAAGGA+GGG | + | chr1_3:45080611-45080630 | None:intergenic | 35.0% | |
| GCATATTCAACAATGAAACG+CGG | + | chr1_3:45080645-45080664 | None:intergenic | 35.0% | |
| TTGCCTTCGCTATCATTAAA+GGG | + | chr1_3:45080670-45080689 | None:intergenic | 35.0% | |
| ATTGCCTTCGCTATCATTAA+AGG | + | chr1_3:45080671-45080690 | None:intergenic | 35.0% | |
| !! | CATTTTAGCAACCTGAGAAA+CGG | - | chr1_3:45080709-45080728 | Msa0120380:intron | 35.0% |
| TTTCATTAACACCGTTTCTC+AGG | + | chr1_3:45080723-45080742 | None:intergenic | 35.0% | |
| AGTCAAAAGGAAGACAGAAA+CGG | + | chr1_3:45080756-45080775 | None:intergenic | 35.0% | |
| TCTATTCTGGACAAACTTGT+TGG | + | chr1_3:45080812-45080831 | None:intergenic | 35.0% | |
| TCTAAGTAGTTAGAGGATTC+AGG | - | chr1_3:45080906-45080925 | Msa0120380:CDS | 35.0% | |
| CTAAGTAGTTAGAGGATTCA+GGG | - | chr1_3:45080907-45080926 | Msa0120380:CDS | 35.0% | |
| TTGTGGCTAGAGGAAATATT+GGG | - | chr1_3:45080957-45080976 | Msa0120380:CDS | 35.0% | |
| AATGGAATGAGTGCAATTAG+AGG | - | chr1_3:45080998-45081017 | Msa0120380:CDS | 35.0% | |
| AAAATGTAATCCTGAAGGTG+AGG | - | chr1_3:45081035-45081054 | Msa0120380:CDS | 35.0% | |
| TGCGAGTGTCTATTTGTATT+CGG | - | chr1_3:45081077-45081096 | Msa0120380:CDS | 35.0% | |
| TGGGAAAATCTTCTCATTGA+AGG | - | chr1_3:45081255-45081274 | Msa0120380:intron | 35.0% | |
| TCTAGAGACTAGAAACTAAC+AGG | - | chr1_3:45081285-45081304 | Msa0120380:intron | 35.0% | |
| AATCTTGAATCAATCCCTGT+CGG | - | chr1_3:45081387-45081406 | Msa0120380:intron | 35.0% | |
| ATTTGGCATTACAAACTCTC+AGG | - | chr1_3:45081539-45081558 | Msa0120380:CDS | 35.0% | |
| !! | ACACTAGCAGTGTTGTTTAT+TGG | - | chr1_3:45081575-45081594 | Msa0120380:CDS | 35.0% |
| !! | CACTAGCAGTGTTGTTTATT+GGG | - | chr1_3:45081576-45081595 | Msa0120380:CDS | 35.0% |
| !! | ACTAGCAGTGTTGTTTATTG+GGG | - | chr1_3:45081577-45081596 | Msa0120380:CDS | 35.0% |
| !! | TTGATTCTTGGTGCTGTTAT+AGG | + | chr1_3:45081671-45081690 | None:intergenic | 35.0% |
| ! | CCATCTCTTAGTTTGATTCT+TGG | + | chr1_3:45081683-45081702 | None:intergenic | 35.0% |
| CCAAGAATCAAACTAAGAGA+TGG | - | chr1_3:45081680-45081699 | Msa0120380:intron | 35.0% | |
| GAATCAAACTAAGAGATGGA+AGG | - | chr1_3:45081684-45081703 | Msa0120380:intron | 35.0% | |
| TATTTAATGTGAGCTTGTGC+AGG | - | chr1_3:45081897-45081916 | Msa0120380:CDS | 35.0% | |
| AGGATGTTGTCAAGGAATTA+GGG | - | chr1_3:45081917-45081936 | Msa0120380:CDS | 35.0% | |
| ATTGTATCCTTTGATAGACC+TGG | - | chr1_3:45081946-45081965 | Msa0120380:CDS | 35.0% | |
| AGCAAGCTCTTCTATATCTA+AGG | + | chr1_3:45082019-45082038 | None:intergenic | 35.0% | |
| CTTGCTGATCAATTGGAATT+GGG | - | chr1_3:45082033-45082052 | Msa0120380:intron | 35.0% | |
| TTGCTGATCAATTGGAATTG+GGG | - | chr1_3:45082034-45082053 | Msa0120380:intron | 35.0% | |
| AACTCTAAATTGTACCTGTG+AGG | + | chr1_3:45082126-45082145 | None:intergenic | 35.0% | |
| AAAAACTTGTGAGACTCTTG+GGG | - | chr1_3:45082183-45082202 | Msa0120380:intron | 35.0% | |
| !!! | CAACCTTTTTCAATACTGAC+AGG | - | chr1_3:45082388-45082407 | Msa0120380:intron | 35.0% |
| TGATCTTCCTGCAAACTTAA+CGG | - | chr1_3:45082458-45082477 | Msa0120380:intron | 35.0% | |
| ! | TCTTGTTTCGAAAGGATATC+TGG | + | chr1_3:45082612-45082631 | None:intergenic | 35.0% |
| ! | AGAGCTTGTAACTAAGTTGA+TGG | - | chr1_3:45082635-45082654 | Msa0120380:intron | 35.0% |
| GTTTGTGGCATATATTCTCT+TGG | - | chr1_3:45082849-45082868 | Msa0120380:intron | 35.0% | |
| TCAAAAACAGAAGACATCGT+AGG | + | chr1_3:45082920-45082939 | None:intergenic | 35.0% | |
| ATGAACAACTTTCACTGCTT+AGG | - | chr1_3:45082948-45082967 | Msa0120380:intron | 35.0% | |
| ATTATTTCCATAAGCTCTCC+AGG | - | chr1_3:45083075-45083094 | Msa0120380:intron | 35.0% | |
| AAATTATCCTGGAGAGCTTA+TGG | + | chr1_3:45083085-45083104 | None:intergenic | 35.0% | |
| CTAACCAAGACAAACTATTG+TGG | + | chr1_3:45083373-45083392 | None:intergenic | 35.0% | |
| TGGTTCCTTGAAAAACTTCT+TGG | - | chr1_3:45083497-45083516 | Msa0120380:intron | 35.0% | |
| AAAAACTTCTTGGCATAACG+AGG | - | chr1_3:45083507-45083526 | Msa0120380:intron | 35.0% | |
| !! | AAGATTGATTCGGGCAAAAT+TGG | + | chr1_3:45083566-45083585 | None:intergenic | 35.0% |
| CAACTTTCTAAATAAGCTGG+AGG | + | chr1_3:45083635-45083654 | None:intergenic | 35.0% | |
| ACTCTGAGTCAATAAACTTC+AGG | + | chr1_3:45083764-45083783 | None:intergenic | 35.0% | |
| !!! | TTATTGACTCAGAGTCCTTT+TGG | - | chr1_3:45083769-45083788 | Msa0120380:intron | 35.0% |
| CTGCAACATCAATTACCAAA+AGG | + | chr1_3:45083787-45083806 | None:intergenic | 35.0% | |
| GAATCTGATAATCTGAGAAG+TGG | - | chr1_3:45083910-45083929 | Msa0120380:intron | 35.0% | |
| ! | GAGGCTAATCTGAAATTTGA+AGG | + | chr1_3:45083949-45083968 | None:intergenic | 35.0% |
| !! | GAGAGAAAGCATTTAGTAGA+AGG | + | chr1_3:45084007-45084026 | None:intergenic | 35.0% |
| CGTGACTTGAATATTGGATT+TGG | - | chr1_3:45084154-45084173 | Msa0120380:intron | 35.0% | |
| GAACCTTCATTGTTTGGAAA+TGG | + | chr1_3:45084214-45084233 | None:intergenic | 35.0% | |
| GCAAGGAGATGAAGATATTA+TGG | - | chr1_3:45084246-45084265 | Msa0120380:intron | 35.0% | |
| GAGATAATAAATGCCAAAGC+TGG | + | chr1_3:45084441-45084460 | None:intergenic | 35.0% | |
| GGCATTTATTATCTCCGTTT+CGG | - | chr1_3:45084446-45084465 | Msa0120380:CDS | 35.0% | |
| TCAGTTTGAATTCTCCGAAA+CGG | + | chr1_3:45084463-45084482 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | + | chr1_3:45078906-45078925 | None:intergenic | 40.0% |
| AGAGACAGATCGACAAGTAA+GGG | + | chr1_3:45079005-45079024 | None:intergenic | 40.0% | |
| CTTCTCTTCTCTCACAACAA+TGG | - | chr1_3:45079077-45079096 | Msa0120380:three_prime_UTR | 40.0% | |
| TGAAGGAAGCTGAAAAGAAG+AGG | + | chr1_3:45079169-45079188 | None:intergenic | 40.0% | |
| ! | TCTTCTTTTCAGCTTCCTTC+AGG | - | chr1_3:45079168-45079187 | Msa0120380:exon | 40.0% |
| !! | TTTTCAGCTTCCTTCAGGTT+GGG | - | chr1_3:45079173-45079192 | Msa0120380:CDS | 40.0% |
| ATCAATCTTCAACTTGTGGG+GGG | + | chr1_3:45079523-45079542 | None:intergenic | 40.0% | |
| ATGAGATGGAAGAAATGCTG+AGG | - | chr1_3:45079569-45079588 | Msa0120380:intron | 40.0% | |
| GTGCTTTGGTGAAGATCTAA+TGG | - | chr1_3:45079597-45079616 | Msa0120380:intron | 40.0% | |
| AGTTTCATATTCTTGCCGCA+CGG | - | chr1_3:45079622-45079641 | Msa0120380:intron | 40.0% | |
| TCTTGAGATTGATTACCGTG+CGG | + | chr1_3:45079640-45079659 | None:intergenic | 40.0% | |
| TAGGGGATTCCTTGATTACA+TGG | + | chr1_3:45079853-45079872 | None:intergenic | 40.0% | |
| ATGTAATCAAGGAATCCCCT+AGG | - | chr1_3:45079852-45079871 | Msa0120380:intron | 40.0% | |
| ! | TCCAGGGAATTTTCTTCAGT+GGG | + | chr1_3:45079967-45079986 | None:intergenic | 40.0% |
| CTTGAAAGGTTTACTAGTCC+AGG | + | chr1_3:45079984-45080003 | None:intergenic | 40.0% | |
| !! | ACTAGCCTTGGATTGGAATT+GGG | - | chr1_3:45080035-45080054 | Msa0120380:intron | 40.0% |
| TGAACGGGAAATGTGATATC+AGG | - | chr1_3:45080066-45080085 | Msa0120380:intron | 40.0% | |
| AAATGTGATATCAGGCCTAG+TGG | - | chr1_3:45080074-45080093 | Msa0120380:intron | 40.0% | |
| GCATTTACTTAACGACCACT+AGG | + | chr1_3:45080092-45080111 | None:intergenic | 40.0% | |
| TTCATTTGCACCACGATGAT+GGG | + | chr1_3:45080139-45080158 | None:intergenic | 40.0% | |
| TTTCATTTGCACCACGATGA+TGG | + | chr1_3:45080140-45080159 | None:intergenic | 40.0% | |
| TCGTGGTGCAAATGAAAACT+AGG | - | chr1_3:45080143-45080162 | Msa0120380:intron | 40.0% | |
| AAGTGAGGCAGTGTTGTATT+TGG | - | chr1_3:45080221-45080240 | Msa0120380:intron | 40.0% | |
| GCAGTGTTGTATTTGGCAAA+TGG | - | chr1_3:45080228-45080247 | Msa0120380:intron | 40.0% | |
| TTTATGTGGCCGATATTGTC+CGG | + | chr1_3:45080381-45080400 | None:intergenic | 40.0% | |
| CAATATCGGCCACATAAATG+AGG | - | chr1_3:45080383-45080402 | Msa0120380:intron | 40.0% | |
| TACAACCCTCCTCATTTATG+TGG | + | chr1_3:45080395-45080414 | None:intergenic | 40.0% | |
| TGCTAAGCTCAAAAGTAAGG+TGG | - | chr1_3:45080471-45080490 | Msa0120380:intron | 40.0% | |
| GGGAAGAGTTCATGAAACTT+GGG | - | chr1_3:45080568-45080587 | Msa0120380:intron | 40.0% | |
| GGAAGAGTTCATGAAACTTG+GGG | - | chr1_3:45080569-45080588 | Msa0120380:intron | 40.0% | |
| CCTTCATTGAGAGTTAAAGG+AGG | + | chr1_3:45080612-45080631 | None:intergenic | 40.0% | |
| CCTCCTTTAACTCTCAATGA+AGG | - | chr1_3:45080609-45080628 | Msa0120380:intron | 40.0% | |
| TTGCTAAAATGGCTACTGTG+AGG | + | chr1_3:45080700-45080719 | None:intergenic | 40.0% | |
| ! | CGTTTCTCAGGTTGCTAAAA+TGG | + | chr1_3:45080711-45080730 | None:intergenic | 40.0% |
| AAAGGAAGACAGAAACGGAA+GGG | + | chr1_3:45080751-45080770 | None:intergenic | 40.0% | |
| AAAAGGAAGACAGAAACGGA+AGG | + | chr1_3:45080752-45080771 | None:intergenic | 40.0% | |
| AATGGGTGTACAGAGTCAAA+AGG | + | chr1_3:45080769-45080788 | None:intergenic | 40.0% | |
| CACTTCTATCGGCAGTAAAT+GGG | + | chr1_3:45080786-45080805 | None:intergenic | 40.0% | |
| TCACTTCTATCGGCAGTAAA+TGG | + | chr1_3:45080787-45080806 | None:intergenic | 40.0% | |
| CAATATTTCCTCTAGCCACA+AGG | + | chr1_3:45080958-45080977 | None:intergenic | 40.0% | |
| CTTGTGGCTAGAGGAAATAT+TGG | - | chr1_3:45080956-45080975 | Msa0120380:CDS | 40.0% | |
| TATTCGGAAATTCAAGGCCA+GGG | - | chr1_3:45081093-45081112 | Msa0120380:CDS | 40.0% | |
| ! | TGTTTATTGGGGTTCTAGCA+TGG | - | chr1_3:45081588-45081607 | Msa0120380:CDS | 40.0% |
| ! | GTTTATTGGGGTTCTAGCAT+GGG | - | chr1_3:45081589-45081608 | Msa0120380:CDS | 40.0% |
| ! | TCAGGAGAGCCACATATTTT+GGG | + | chr1_3:45081641-45081660 | None:intergenic | 40.0% |
| ! | ATCAGGAGAGCCACATATTT+TGG | + | chr1_3:45081642-45081661 | None:intergenic | 40.0% |
| AAAATATGTGGCTCTCCTGA+TGG | - | chr1_3:45081641-45081660 | Msa0120380:CDS | 40.0% | |
| AAATATGTGGCTCTCCTGAT+GGG | - | chr1_3:45081642-45081661 | Msa0120380:intron | 40.0% | |
| !! | ATTCTTGGTGCTGTTATAGG+CGG | + | chr1_3:45081668-45081687 | None:intergenic | 40.0% |
| !! | ACTAAGAGATGGAAGGCATT+TGG | - | chr1_3:45081691-45081710 | Msa0120380:intron | 40.0% |
| CATTTGGCATACAAAGAGCA+TGG | - | chr1_3:45081707-45081726 | Msa0120380:intron | 40.0% | |
| CAGGATGTTGTCAAGGAATT+AGG | - | chr1_3:45081916-45081935 | Msa0120380:CDS | 40.0% | |
| GGATGTTGTCAAGGAATTAG+GGG | - | chr1_3:45081918-45081937 | Msa0120380:CDS | 40.0% | |
| TCCTTTGATAGACCTGGTTA+TGG | - | chr1_3:45081952-45081971 | Msa0120380:CDS | 40.0% | |
| TCCATAACCAGGTCTATCAA+AGG | + | chr1_3:45081956-45081975 | None:intergenic | 40.0% | |
| !! | AGAAGAGCTTGCTGATCAAT+TGG | - | chr1_3:45082026-45082045 | Msa0120380:intron | 40.0% |
| ! | GCTTGCTGATCAATTGGAAT+TGG | - | chr1_3:45082032-45082051 | Msa0120380:intron | 40.0% |
| GGGTCCAAATTCTATGTCAT+TGG | - | chr1_3:45082054-45082073 | Msa0120380:intron | 40.0% | |
| TATGTCATTGGTACTTCCCT+GGG | - | chr1_3:45082066-45082085 | Msa0120380:intron | 40.0% | |
| AAGCTATCTTGGAGAGCTTA+TGG | + | chr1_3:45082262-45082281 | None:intergenic | 40.0% | |
| ! | CAGCCTGTCAGTATTGAAAA+AGG | + | chr1_3:45082394-45082413 | None:intergenic | 40.0% |
| !!! | CTTTTTCAATACTGACAGGC+TGG | - | chr1_3:45082392-45082411 | Msa0120380:intron | 40.0% |
| GTTAAGTTTGCAGGAAGATC+AGG | + | chr1_3:45082459-45082478 | None:intergenic | 40.0% | |
| TTTCCATTGGGAATAGGCTT+CGG | + | chr1_3:45082484-45082503 | None:intergenic | 40.0% | |
| !! | GCTCTTTGTCTTGTTTCGAA+AGG | + | chr1_3:45082620-45082639 | None:intergenic | 40.0% |
| AGCTGCACAAATTCAGTTTG+TGG | - | chr1_3:45082834-45082853 | Msa0120380:intron | 40.0% | |
| AGCACTTGTGAGACTGTTTA+TGG | - | chr1_3:45083017-45083036 | Msa0120380:intron | 40.0% | |
| CTCATGCTTTGTAATCATGC+TGG | - | chr1_3:45083338-45083357 | Msa0120380:intron | 40.0% | |
| GCATGATCATGTCTTCTAGA+TGG | - | chr1_3:45083462-45083481 | Msa0120380:intron | 40.0% | |
| TGATCATGTCTTCTAGATGG+AGG | - | chr1_3:45083465-45083484 | Msa0120380:intron | 40.0% | |
| TTTCCAACCATTCGGGTAAA+GGG | + | chr1_3:45083612-45083631 | None:intergenic | 40.0% | |
| AAACTTCAGGCAGTTATCCA+TGG | + | chr1_3:45083751-45083770 | None:intergenic | 40.0% | |
| ! | TTTTATGTGGCTTCCAAAGC+AGG | - | chr1_3:45084099-45084118 | Msa0120380:intron | 40.0% |
| ATCCAATATTCAAGTCACGG+TGG | + | chr1_3:45084153-45084172 | None:intergenic | 40.0% | |
| TGAACGGAACCTTCATTGTT+TGG | + | chr1_3:45084220-45084239 | None:intergenic | 40.0% | |
| ATGAAGGTTCCGTTCATCTT+TGG | - | chr1_3:45084224-45084243 | Msa0120380:intron | 40.0% | |
| ATCTCCTTGCCAAAGATGAA+CGG | + | chr1_3:45084236-45084255 | None:intergenic | 40.0% | |
| ATGTATCGTTGTAGTGTGAC+AGG | + | chr1_3:45084274-45084293 | None:intergenic | 40.0% | |
| !!! | GTCACTTTTAGGTGTGAAGT+AGG | - | chr1_3:45084387-45084406 | Msa0120380:intron | 40.0% |
| TAGGCTTCTGTATTGTTCAC+CGG | - | chr1_3:45084406-45084425 | Msa0120380:CDS | 40.0% | |
| GTGAATTCTAACCTGCCACT+AGG | - | chr1_3:45078888-45078907 | Msa0120380:three_prime_UTR | 45.0% | |
| CAGAGACAGATCGACAAGTA+AGG | + | chr1_3:45079006-45079025 | None:intergenic | 45.0% | |
| ! | CTTTTCAGCTTCCTTCAGGT+TGG | - | chr1_3:45079172-45079191 | Msa0120380:CDS | 45.0% |
| !! | ATGCTGAGGAAGAAGTGCTT+TGG | - | chr1_3:45079583-45079602 | Msa0120380:intron | 45.0% |
| AACTGGCTGAAGCTATTGCA+CGG | - | chr1_3:45079777-45079796 | Msa0120380:intron | 45.0% | |
| TCCCACTGAAGAAAATTCCC+TGG | - | chr1_3:45079963-45079982 | Msa0120380:intron | 45.0% | |
| ! | GTCCAGGGAATTTTCTTCAG+TGG | + | chr1_3:45079968-45079987 | None:intergenic | 45.0% |
| !! | GGCTAGTGTGTGTCATTTCA+AGG | + | chr1_3:45080022-45080041 | None:intergenic | 45.0% |
| ! | GAAATGACACACACTAGCCT+TGG | - | chr1_3:45080023-45080042 | Msa0120380:intron | 45.0% |
| !! | CACTAGCCTTGGATTGGAAT+TGG | - | chr1_3:45080034-45080053 | Msa0120380:intron | 45.0% |
| ACTCTCCCAATTCCAATCCA+AGG | + | chr1_3:45080043-45080062 | None:intergenic | 45.0% | |
| GAATTGGGAGAGTAGCTGAA+CGG | - | chr1_3:45080050-45080069 | Msa0120380:intron | 45.0% | |
| AATTGGGAGAGTAGCTGAAC+GGG | - | chr1_3:45080051-45080070 | Msa0120380:intron | 45.0% | |
| TCATTTGCACCACGATGATG+GGG | + | chr1_3:45080138-45080157 | None:intergenic | 45.0% | |
| GGTTCCATAGCAGTTGAAAC+CGG | - | chr1_3:45080164-45080183 | Msa0120380:intron | 45.0% | |
| ! | CAAACCGGTTTCAACTGCTA+TGG | + | chr1_3:45080171-45080190 | None:intergenic | 45.0% |
| TTCTATCTTGGGCTTGTCCT+TGG | + | chr1_3:45080197-45080216 | None:intergenic | 45.0% | |
| GACGTTGCTCACTCATCTAA+AGG | + | chr1_3:45080259-45080278 | None:intergenic | 45.0% | |
| TAGATGAGTGAGCAACGTCA+AGG | - | chr1_3:45080260-45080279 | Msa0120380:intron | 45.0% | |
| TGTCAAGGATACTCCTGATC+CGG | - | chr1_3:45080329-45080348 | Msa0120380:intron | 45.0% | |
| ATCCTCAACCCGGACAATAT+CGG | - | chr1_3:45080369-45080388 | Msa0120380:intron | 45.0% | |
| TTATGTGGCCGATATTGTCC+GGG | + | chr1_3:45080380-45080399 | None:intergenic | 45.0% | |
| TATCGGCCACATAAATGAGG+AGG | - | chr1_3:45080386-45080405 | Msa0120380:intron | 45.0% | |
| ATCGGCCACATAAATGAGGA+GGG | - | chr1_3:45080387-45080406 | Msa0120380:intron | 45.0% | |
| AAGCAACTTGCAAACCTGTG+AGG | - | chr1_3:45080546-45080565 | Msa0120380:intron | 45.0% | |
| AGCAACTTGCAAACCTGTGA+GGG | - | chr1_3:45080547-45080566 | Msa0120380:intron | 45.0% | |
| GGGGAAGAGTTCATGAAACT+TGG | - | chr1_3:45080567-45080586 | Msa0120380:intron | 45.0% | |
| AGTTCATGAAACTTGGGGCA+TGG | - | chr1_3:45080574-45080593 | Msa0120380:intron | 45.0% | |
| CCTTCGCTATCATTAAAGGG+TGG | + | chr1_3:45080667-45080686 | None:intergenic | 45.0% | |
| ! | CCACCCTTTAATGATAGCGA+AGG | - | chr1_3:45080664-45080683 | Msa0120380:intron | 45.0% |
| CTTGTTGGCGTCACTTCTAT+CGG | + | chr1_3:45080797-45080816 | None:intergenic | 45.0% | |
| CCTCTAACTACTTAGAAGCC+AGG | + | chr1_3:45080902-45080921 | None:intergenic | 45.0% | |
| CCTGGCTTCTAAGTAGTTAG+AGG | - | chr1_3:45080899-45080918 | Msa0120380:intron | 45.0% | |
| GGAATGAGTGCAATTAGAGG+TGG | - | chr1_3:45081001-45081020 | Msa0120380:CDS | 45.0% | |
| ATGAGTGCAATTAGAGGTGG+AGG | - | chr1_3:45081004-45081023 | Msa0120380:CDS | 45.0% | |
| ATGTAATCCTGAAGGTGAGG+TGG | - | chr1_3:45081038-45081057 | Msa0120380:CDS | 45.0% | |
| ! | AAGGTGAGGTGGTGGTTTAT+CGG | - | chr1_3:45081049-45081068 | Msa0120380:CDS | 45.0% |
| GTATTCGGAAATTCAAGGCC+AGG | - | chr1_3:45081092-45081111 | Msa0120380:CDS | 45.0% | |
| ACATGGACAGGATACAGTAG+TGG | - | chr1_3:45081116-45081135 | Msa0120380:CDS | 45.0% | |
| ! | ACAGGATACAGTAGTGGAGT+GGG | - | chr1_3:45081122-45081141 | Msa0120380:CDS | 45.0% |
| GGTGGGAGAAGAATTGATGT+TGG | - | chr1_3:45081183-45081202 | Msa0120380:intron | 45.0% | |
| TGGATGAGAGTTCCCAACAT+TGG | - | chr1_3:45081203-45081222 | Msa0120380:intron | 45.0% | |
| ! | ACGGGGAAGGATCTTTTGAA+TGG | - | chr1_3:45081235-45081254 | Msa0120380:intron | 45.0% |
| ! | CGGGGAAGGATCTTTTGAAT+GGG | - | chr1_3:45081236-45081255 | Msa0120380:intron | 45.0% |
| AATTACGGGTGATAGGGTGT+TGG | + | chr1_3:45081810-45081829 | None:intergenic | 45.0% | |
| GGATCACTTTCTCCATAACC+AGG | + | chr1_3:45081967-45081986 | None:intergenic | 45.0% | |
| CTATGTCATTGGTACTTCCC+TGG | - | chr1_3:45082065-45082084 | Msa0120380:intron | 45.0% | |
| ACCTGTGAGGTATGTGCTTA+AGG | + | chr1_3:45082113-45082132 | None:intergenic | 45.0% | |
| TTCCACCAGTATGTTAGCCA+TGG | + | chr1_3:45082546-45082565 | None:intergenic | 45.0% | |
| ACTGGTGGAACACTCAAAGA+TGG | - | chr1_3:45082556-45082575 | Msa0120380:intron | 45.0% | |
| TTCACTGCTTAGGACCTGTT+TGG | - | chr1_3:45082958-45082977 | Msa0120380:intron | 45.0% | |
| CTAGATGGAGGTTTCCCTTA+TGG | - | chr1_3:45083477-45083496 | Msa0120380:intron | 45.0% | |
| GAGGTAATCAATCTTCGGAG+TGG | - | chr1_3:45083526-45083545 | Msa0120380:intron | 45.0% | |
| AAGACATCCCTTTACCCGAA+TGG | - | chr1_3:45083602-45083621 | Msa0120380:intron | 45.0% | |
| GTTTCCAACCATTCGGGTAA+AGG | + | chr1_3:45083613-45083632 | None:intergenic | 45.0% | |
| !! | AGAGCAATGCTGCTTTGACT+TGG | - | chr1_3:45083657-45083676 | Msa0120380:intron | 45.0% |
| !! | CTGCTTTGACTTGGTTAGCT+CGG | - | chr1_3:45083666-45083685 | Msa0120380:intron | 45.0% |
| ! | CCTTGTTGTCTTACCTGCTT+TGG | + | chr1_3:45084115-45084134 | None:intergenic | 45.0% |
| CCAAAGCAGGTAAGACAACA+AGG | - | chr1_3:45084112-45084131 | Msa0120380:intron | 45.0% | |
| CAATATTCAAGTCACGGTGG+AGG | + | chr1_3:45084150-45084169 | None:intergenic | 45.0% | |
| CTCCACCGTGACTTGAATAT+TGG | - | chr1_3:45084148-45084167 | Msa0120380:intron | 45.0% | |
| ! | AGTTCATGGTAGTGAACCCA+CGG | + | chr1_3:45084310-45084329 | None:intergenic | 45.0% |
| GTTCACTACCATGAACTTCC+AGG | - | chr1_3:45084313-45084332 | Msa0120380:intron | 45.0% | |
| TACCATGAACTTCCAGGTTC+TGG | - | chr1_3:45084319-45084338 | Msa0120380:intron | 45.0% | |
| AATAAATGCCAAAGCTGGCC+TGG | + | chr1_3:45084436-45084455 | None:intergenic | 45.0% | |
| AAAGACAGATCGGGGTGATC+TGG | - | chr1_3:45078943-45078962 | Msa0120380:three_prime_UTR | 50.0% | |
| TCTCTCACAACAATGGCCAC+TGG | - | chr1_3:45079084-45079103 | Msa0120380:three_prime_UTR | 50.0% | |
| AGCTCGTTCTCACACCAGAA+GGG | - | chr1_3:45079134-45079153 | Msa0120380:three_prime_UTR | 50.0% | |
| !! | AGAGGATTTGTTGGCCCTTC+TGG | + | chr1_3:45079151-45079170 | None:intergenic | 50.0% |
| AGAGCAAAGACCCAACCTGA+AGG | + | chr1_3:45079186-45079205 | None:intergenic | 50.0% | |
| GTCAGAACAACCAGCCCAAT+TGG | - | chr1_3:45079907-45079926 | Msa0120380:intron | 50.0% | |
| !! | GACACACACTAGCCTTGGAT+TGG | - | chr1_3:45080028-45080047 | Msa0120380:intron | 50.0% |
| !! | TTGAAACCGGTTTGCTGCCA+AGG | - | chr1_3:45080177-45080196 | Msa0120380:intron | 50.0% |
| GTCAAGGATACTCCTGATCC+GGG | - | chr1_3:45080330-45080349 | Msa0120380:intron | 50.0% | |
| ATCATCTTTCCGAGCTCTCC+CGG | + | chr1_3:45080351-45080370 | None:intergenic | 50.0% | |
| CGGAAAGATGATCCTCAACC+CGG | - | chr1_3:45080359-45080378 | Msa0120380:intron | 50.0% | |
| !! | TGATGTTGGTGAGCATCGAG+TGG | - | chr1_3:45080428-45080447 | Msa0120380:intron | 50.0% |
| GCAACTTGCAAACCTGTGAG+GGG | - | chr1_3:45080548-45080567 | Msa0120380:intron | 50.0% | |
| TCATGAACTCTTCCCCTCAC+AGG | + | chr1_3:45080563-45080582 | None:intergenic | 50.0% | |
| CTCTTAGCCTCAACCCAACA+CGG | - | chr1_3:45080870-45080889 | Msa0120380:intron | 50.0% | |
| TCTTAGCCTCAACCCAACAC+GGG | - | chr1_3:45080871-45080890 | Msa0120380:intron | 50.0% | |
| AGGATTCAGGGATAGCATCG+AGG | - | chr1_3:45080919-45080938 | Msa0120380:CDS | 50.0% | |
| ! | GGATTCAGGGATAGCATCGA+GGG | - | chr1_3:45080920-45080939 | Msa0120380:CDS | 50.0% |
| ! | AGGGATAGCATCGAGGGAAA+GGG | - | chr1_3:45080926-45080945 | Msa0120380:CDS | 50.0% |
| ! | GGGAAAGGGCATATTCCTTG+TGG | - | chr1_3:45080940-45080959 | Msa0120380:CDS | 50.0% |
| GGCATATTCCTTGTGGCTAG+AGG | - | chr1_3:45080947-45080966 | Msa0120380:CDS | 50.0% | |
| TAATCCTGAAGGTGAGGTGG+TGG | - | chr1_3:45081041-45081060 | Msa0120380:CDS | 50.0% | |
| TAAACCACCACCTCACCTTC+AGG | + | chr1_3:45081048-45081067 | None:intergenic | 50.0% | |
| GAAATTCAAGGCCAGGGACA+TGG | - | chr1_3:45081099-45081118 | Msa0120380:CDS | 50.0% | |
| ! | GACAGGATACAGTAGTGGAG+TGG | - | chr1_3:45081121-45081140 | Msa0120380:CDS | 50.0% |
| GTTCAGGTGGCTGGAAAGAA+GGG | - | chr1_3:45081162-45081181 | Msa0120380:intron | 50.0% | |
| !! | GAGTTCCCAACATTGGCTCT+CGG | - | chr1_3:45081210-45081229 | Msa0120380:intron | 50.0% |
| ACCTCATACTAAGGCCGACA+GGG | + | chr1_3:45081404-45081423 | None:intergenic | 50.0% | |
| AACCTCATACTAAGGCCGAC+AGG | + | chr1_3:45081405-45081424 | None:intergenic | 50.0% | |
| GCTCCTCCTCCCAAAATATG+TGG | - | chr1_3:45081629-45081648 | Msa0120380:CDS | 50.0% | |
| !! | GAGCCACATATTTTGGGAGG+AGG | + | chr1_3:45081635-45081654 | None:intergenic | 50.0% |
| !! | GGAGAGCCACATATTTTGGG+AGG | + | chr1_3:45081638-45081657 | None:intergenic | 50.0% |
| TCCATGGTTTCAGCAGTTGC+AGG | - | chr1_3:45081768-45081787 | Msa0120380:CDS | 50.0% | |
| GCTTGTGCAGGATGTTGTCA+AGG | - | chr1_3:45081909-45081928 | Msa0120380:CDS | 50.0% | |
| TCATTGGTACTTCCCTGGGT+GGG | - | chr1_3:45082070-45082089 | Msa0120380:intron | 50.0% | |
| CCATACAATTTGCCCACCCA+GGG | + | chr1_3:45082085-45082104 | None:intergenic | 50.0% | |
| TCCATACAATTTGCCCACCC+AGG | + | chr1_3:45082086-45082105 | None:intergenic | 50.0% | |
| GCCTTAAGCACATACCTCAC+AGG | - | chr1_3:45082109-45082128 | Msa0120380:intron | 50.0% | |
| TTCAATACTGACAGGCTGGC+AGG | - | chr1_3:45082396-45082415 | Msa0120380:intron | 50.0% | |
| ACACGCCATGGCTAACATAC+TGG | - | chr1_3:45082538-45082557 | Msa0120380:intron | 50.0% | |
| CATCCCTTTACCCGAATGGT+TGG | - | chr1_3:45083606-45083625 | Msa0120380:intron | 50.0% | |
| CTGGAGGTTTCCAACCATTC+GGG | + | chr1_3:45083619-45083638 | None:intergenic | 50.0% | |
| GCTGGAGGTTTCCAACCATT+CGG | + | chr1_3:45083620-45083639 | None:intergenic | 50.0% | |
| ! | CAATTTTCCCTCCGCATCCA+TGG | - | chr1_3:45083731-45083750 | Msa0120380:intron | 50.0% |
| CAGTTATCCATGGATGCGGA+GGG | + | chr1_3:45083741-45083760 | None:intergenic | 50.0% | |
| CAGGCAGTTATCCATGGATG+CGG | + | chr1_3:45083745-45083764 | None:intergenic | 50.0% | |
| GGTTCCGTTCATCTTTGGCA+AGG | - | chr1_3:45084229-45084248 | Msa0120380:intron | 50.0% | |
| ! | GTATTGTTCACCGGCTATCC+AGG | - | chr1_3:45084415-45084434 | Msa0120380:CDS | 50.0% |
| ! | TATCCTCACCTTTTCCCGTG+AGG | - | chr1_3:45084658-45084677 | Msa0120380:five_prime_UTR | 50.0% |
| TTGTCAGGTAGCCTAGTGGC+AGG | + | chr1_3:45078902-45078921 | None:intergenic | 55.0% | |
| CAGCTCGTTCTCACACCAGA+AGG | - | chr1_3:45079133-45079152 | Msa0120380:three_prime_UTR | 55.0% | |
| GCTTGTCCTTGGCAGCAAAC+CGG | + | chr1_3:45080186-45080205 | None:intergenic | 55.0% | |
| ! | CAGGGATAGCATCGAGGGAA+AGG | - | chr1_3:45080925-45080944 | Msa0120380:CDS | 55.0% |
| CTGTATCCTGTCCATGTCCC+TGG | + | chr1_3:45081113-45081132 | None:intergenic | 55.0% | |
| TAGTGGAGTGGGAGAAGAGC+TGG | - | chr1_3:45081133-45081152 | Msa0120380:CDS | 55.0% | |
| AGTGGAGTGGGAGAAGAGCT+GGG | - | chr1_3:45081134-45081153 | Msa0120380:CDS | 55.0% | |
| GAAGAGCTGGGAACAGGTTC+AGG | - | chr1_3:45081146-45081165 | Msa0120380:intron | 55.0% | |
| GGTTCAGGTGGCTGGAAAGA+AGG | - | chr1_3:45081161-45081180 | Msa0120380:intron | 55.0% | |
| AGGTGGCTGGAAAGAAGGGT+GGG | - | chr1_3:45081166-45081185 | Msa0120380:intron | 55.0% | |
| CGTCACCGAGAGCCAATGTT+GGG | + | chr1_3:45081218-45081237 | None:intergenic | 55.0% | |
| !! | CCAACATTGGCTCTCGGTGA+CGG | - | chr1_3:45081216-45081235 | Msa0120380:intron | 55.0% |
| !! | CAACATTGGCTCTCGGTGAC+GGG | - | chr1_3:45081217-45081236 | Msa0120380:intron | 55.0% |
| !! | AACATTGGCTCTCGGTGACG+GGG | - | chr1_3:45081218-45081237 | Msa0120380:intron | 55.0% |
| TCCCTGTCGGCCTTAGTATG+AGG | - | chr1_3:45081400-45081419 | Msa0120380:intron | 55.0% | |
| GCCTGCAACTGCTGAAACCA+TGG | + | chr1_3:45081772-45081791 | None:intergenic | 55.0% | |
| GTCATTGGTACTTCCCTGGG+TGG | - | chr1_3:45082069-45082088 | Msa0120380:intron | 55.0% | |
| CCCTGGGTGGGCAAATTGTA+TGG | - | chr1_3:45082082-45082101 | Msa0120380:intron | 55.0% | |
| CCACCAGAAGTTGACGACTG+GGG | + | chr1_3:45082436-45082455 | None:intergenic | 55.0% | |
| GCCACCAGAAGTTGACGACT+GGG | + | chr1_3:45082437-45082456 | None:intergenic | 55.0% | |
| GCTTCGGCCGTTAAGTTTGC+AGG | + | chr1_3:45082468-45082487 | None:intergenic | 55.0% | |
| ! | GTGTTGCTCACTACACGCCA+TGG | - | chr1_3:45082526-45082545 | Msa0120380:intron | 55.0% |
| CGCCATGGCTAACATACTGG+TGG | - | chr1_3:45082541-45082560 | Msa0120380:intron | 55.0% | |
| GCAGTTATCCATGGATGCGG+AGG | + | chr1_3:45083742-45083761 | None:intergenic | 55.0% | |
| ACATCGCGCAAAACCTTCCG+TGG | - | chr1_3:45084290-45084309 | Msa0120380:intron | 55.0% | |
| CATCGCGCAAAACCTTCCGT+GGG | - | chr1_3:45084291-45084310 | Msa0120380:intron | 55.0% | |
| ! | CATGGTAGTGAACCCACGGA+AGG | + | chr1_3:45084306-45084325 | None:intergenic | 55.0% |
| GGCCAGAACCTGGAAGTTCA+TGG | + | chr1_3:45084324-45084343 | None:intergenic | 55.0% | |
| CACTCACACCACCAGCATGA+GGG | + | chr1_3:45084354-45084373 | None:intergenic | 55.0% | |
| TCACTCACACCACCAGCATG+AGG | + | chr1_3:45084355-45084374 | None:intergenic | 55.0% | |
| CATCCTCACGGGAAAAGGTG+AGG | + | chr1_3:45084664-45084683 | None:intergenic | 55.0% | |
| !! | GGAAGCATCCTCACGGGAAA+AGG | + | chr1_3:45084669-45084688 | None:intergenic | 55.0% |
| TGAGAAGGGCCCCATCATCG+TGG | - | chr1_3:45080126-45080145 | Msa0120380:intron | 60.0% | |
| ACTCCTGATCCGGGAGAGCT+CGG | - | chr1_3:45080339-45080358 | Msa0120380:intron | 60.0% | |
| TTTCCGAGCTCTCCCGGATC+AGG | + | chr1_3:45080345-45080364 | None:intergenic | 60.0% | |
| GGCCGATATTGTCCGGGTTG+AGG | + | chr1_3:45080374-45080393 | None:intergenic | 60.0% | |
| ! | GAAGCACCCGTGTTGGGTTG+AGG | + | chr1_3:45080880-45080899 | None:intergenic | 60.0% |
| AACCCAACACGGGTGCTTCC+TGG | - | chr1_3:45080881-45080900 | Msa0120380:intron | 60.0% | |
| !! | AGCCAGGAAGCACCCGTGTT+GGG | + | chr1_3:45080886-45080905 | None:intergenic | 60.0% |
| !! | AAGCCAGGAAGCACCCGTGT+TGG | + | chr1_3:45080887-45080906 | None:intergenic | 60.0% |
| TCAAGGCCAGGGACATGGAC+AGG | - | chr1_3:45081104-45081123 | Msa0120380:CDS | 60.0% | |
| GTGGGAGAAGAGCTGGGAAC+AGG | - | chr1_3:45081140-45081159 | Msa0120380:CDS | 60.0% | |
| GAGCTGGGAACAGGTTCAGG+TGG | - | chr1_3:45081149-45081168 | Msa0120380:intron | 60.0% | |
| TGGGAACAGGTTCAGGTGGC+TGG | - | chr1_3:45081153-45081172 | Msa0120380:intron | 60.0% | |
| CAGGTGGCTGGAAAGAAGGG+TGG | - | chr1_3:45081165-45081184 | Msa0120380:intron | 60.0% | |
| CCGTCACCGAGAGCCAATGT+TGG | + | chr1_3:45081219-45081238 | None:intergenic | 60.0% | |
| GCTGTTATAGGCGGCCCATC+AGG | + | chr1_3:45081659-45081678 | None:intergenic | 60.0% | |
| CAGTTGCAGGCATGACGCTG+TGG | - | chr1_3:45081781-45081800 | Msa0120380:CDS | 60.0% | |
| TGGCCCCAGTCGTCAACTTC+TGG | - | chr1_3:45082430-45082449 | Msa0120380:intron | 60.0% | |
| CCCCAGTCGTCAACTTCTGG+TGG | - | chr1_3:45082433-45082452 | Msa0120380:intron | 60.0% | |
| GGCCACCAGAAGTTGACGAC+TGG | + | chr1_3:45082438-45082457 | None:intergenic | 60.0% | |
| CGGCCGAAGCCTATTCCCAA+TGG | - | chr1_3:45082478-45082497 | Msa0120380:intron | 60.0% | |
| ! | GAGCAACACGAAGCGCCCAT+TGG | + | chr1_3:45082515-45082534 | None:intergenic | 60.0% |
| CACCAGCATGAGGGAAGAGG+TGG | + | chr1_3:45084345-45084364 | None:intergenic | 60.0% | |
| CACCTCTTCCCTCATGCTGG+TGG | - | chr1_3:45084343-45084362 | Msa0120380:intron | 60.0% | |
| CACCACCAGCATGAGGGAAG+AGG | + | chr1_3:45084348-45084367 | None:intergenic | 60.0% | |
| ! | CCAAAGCTGGCCTGGATAGC+CGG | + | chr1_3:45084428-45084447 | None:intergenic | 60.0% |
| !! | TTGGCTCTCGGTGACGGGGA+AGG | - | chr1_3:45081222-45081241 | Msa0120380:intron | 65.0% |
| GGGAAGAGGTGGCCAGAACC+TGG | + | chr1_3:45084334-45084353 | None:intergenic | 65.0% | |
| GGCCACCTCTTCCCTCATGC+TGG | - | chr1_3:45084340-45084359 | Msa0120380:intron | 65.0% | |
| CCGGCTATCCAGGCCAGCTT+TGG | - | chr1_3:45084425-45084444 | Msa0120380:CDS | 65.0% | |
| GCTGGCAGGTGCAGCGCTCT+TGG | - | chr1_3:45082410-45082429 | Msa0120380:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 45078888 | 45084691 | 45078888 | ID=Msa0120380;Name=Msa0120380 |
| chr1_3 | mRNA | 45078888 | 45084691 | 45078888 | ID=Msa0120380-mRNA-1;Parent=Msa0120380;Name=Msa0120380-mRNA-1;_AED=0.29;_eAED=0.29;_QI=208|0.75|0.6|1|1|1|5|283|353 |
| chr1_3 | exon | 45078888 | 45079458 | 45078888 | ID=Msa0120380-mRNA-1:exon:13539;Parent=Msa0120380-mRNA-1 |
| chr1_3 | exon | 45080902 | 45081161 | 45080902 | ID=Msa0120380-mRNA-1:exon:13538;Parent=Msa0120380-mRNA-1 |
| chr1_3 | exon | 45081504 | 45081660 | 45081504 | ID=Msa0120380-mRNA-1:exon:13537;Parent=Msa0120380-mRNA-1 |
| chr1_3 | exon | 45081756 | 45082018 | 45081756 | ID=Msa0120380-mRNA-1:exon:13536;Parent=Msa0120380-mRNA-1 |
| chr1_3 | exon | 45084390 | 45084691 | 45084390 | ID=Msa0120380-mRNA-1:exon:13535;Parent=Msa0120380-mRNA-1 |
| chr1_3 | five_prime_UTR | 45084484 | 45084691 | 45084484 | ID=Msa0120380-mRNA-1:five_prime_utr;Parent=Msa0120380-mRNA-1 |
| chr1_3 | CDS | 45084390 | 45084483 | 45084390 | ID=Msa0120380-mRNA-1:cds;Parent=Msa0120380-mRNA-1 |
| chr1_3 | CDS | 45081756 | 45082018 | 45081756 | ID=Msa0120380-mRNA-1:cds;Parent=Msa0120380-mRNA-1 |
| chr1_3 | CDS | 45081504 | 45081660 | 45081504 | ID=Msa0120380-mRNA-1:cds;Parent=Msa0120380-mRNA-1 |
| chr1_3 | CDS | 45080902 | 45081161 | 45080902 | ID=Msa0120380-mRNA-1:cds;Parent=Msa0120380-mRNA-1 |
| chr1_3 | CDS | 45079171 | 45079458 | 45079171 | ID=Msa0120380-mRNA-1:cds;Parent=Msa0120380-mRNA-1 |
| chr1_3 | three_prime_UTR | 45078888 | 45079170 | 45078888 | ID=Msa0120380-mRNA-1:three_prime_utr;Parent=Msa0120380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
