Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271500 | XP_003593102.1 | 93.385 | 257 | 7 | 4 | 1 | 256 | 1 | 248 | 7.39e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271500 | G7IK15 | 93.385 | 257 | 7 | 4 | 1 | 256 | 1 | 248 | 3.53e-165 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0233570 | Msa0271500 | 0.827379 | 1.616395e-54 | -8.615850e-47 |
| Msa0271500 | Msa0312250 | 0.828016 | 1.136204e-54 | -8.615850e-47 |
| Msa0271500 | Msa0579360 | -0.811302 | 7.493944e-51 | -8.615850e-47 |
| Msa0271500 | Msa0982590 | -0.804216 | 2.402688e-49 | -8.615850e-47 |
| Msa0271500 | Msa1073060 | 0.815216 | 1.035588e-51 | -8.615850e-47 |
| Msa0271500 | Msa1160780 | 0.817935 | 2.547307e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271500 | MtrunA17_Chr2g0278391 | 93.385 | 257 | 7 | 4 | 1 | 256 | 37 | 284 | 8.39e-169 | 467 |
| Msa0271500 | MtrunA17_Chr5g0440571 | 26.389 | 216 | 134 | 9 | 26 | 237 | 40 | 234 | 5.65e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271500 | AT2G01080.1 | 71.064 | 235 | 58 | 3 | 27 | 256 | 2 | 231 | 4.12e-86 | 256 |
Find 108 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGTCAGAGATTGCTTTCT+TGG | 0.159105 | 2_3:+2893150 | None:intergenic |
| TTTGTGAATAGTACTATTTC+TGG | 0.182592 | 2_3:+2896407 | None:intergenic |
| CAGATGCTTCACCCACTAAT+TGG | 0.237891 | 2_3:+2892750 | None:intergenic |
| CTTGGAAAAGCTTCAGTTCC+TGG | 0.248208 | 2_3:-2895906 | Msa0271500:CDS |
| GAAGAAAGAAAGTGGGAGTT+TGG | 0.272911 | 2_3:+2892695 | None:intergenic |
| TTTGGAAAATATATTAAATC+AGG | 0.281347 | 2_3:-2892883 | Msa0271500:three_prime_UTR |
| TGAAGCGCCGGCGGTGGTTC+CGG | 0.303105 | 2_3:+2896031 | None:intergenic |
| GAGAAATTAAGTGAAAATTA+AGG | 0.315101 | 2_3:+2893049 | None:intergenic |
| CAATTAGTGGGTGAAGCATC+TGG | 0.315681 | 2_3:-2892749 | Msa0271500:three_prime_UTR |
| TCGTGTTGATCTTAGAGTTT+TGG | 0.329491 | 2_3:-2895769 | Msa0271500:CDS |
| TAACTTTACAGTTTGGATAC+TGG | 0.334953 | 2_3:+2892775 | None:intergenic |
| ATTTCTGGGTTTGTAAGAAT+TGG | 0.346496 | 2_3:+2896422 | None:intergenic |
| GAGGAGCGGGCTGGTGTTCG+TGG | 0.352424 | 2_3:+2896236 | None:intergenic |
| ATTGGATTAACTTTACAGTT+TGG | 0.352687 | 2_3:+2892768 | None:intergenic |
| AAGAAAATTACCTCAACATT+AGG | 0.356187 | 2_3:+2895705 | None:intergenic |
| GGAGGCGGAGGAGGAGGAGC+GGG | 0.360174 | 2_3:+2896223 | None:intergenic |
| TACTTGATCCCTACCTTGTT+CGG | 0.365164 | 2_3:+2895969 | None:intergenic |
| TTTAAGGTGAGGAAACAAAA+AGG | 0.377242 | 2_3:+2892669 | None:intergenic |
| TGTAAAGTTAATCCAATTAG+TGG | 0.377593 | 2_3:-2892762 | Msa0271500:three_prime_UTR |
| AGTATTGAGGGTGTTGGTGG+TGG | 0.378009 | 2_3:+2896261 | None:intergenic |
| GTGAGAACGAAAGATTGATT+TGG | 0.386517 | 2_3:+2896464 | None:intergenic |
| ATTTGGTTACTTCCATTGTA+AGG | 0.392501 | 2_3:-2892817 | Msa0271500:three_prime_UTR |
| GTGGTTCCGGTGGGGATGTT+CGG | 0.396582 | 2_3:+2896044 | None:intergenic |
| TTGTGAATAGTACTATTTCT+GGG | 0.400955 | 2_3:+2896408 | None:intergenic |
| AAGAAAGAAAGTGGGAGTTT+GGG | 0.415446 | 2_3:+2892696 | None:intergenic |
| GCCTTTCAAGGAGGCGGAGG+AGG | 0.421642 | 2_3:+2896214 | None:intergenic |
| AAAGGTTAGAAGAAAGAAAG+TGG | 0.423876 | 2_3:+2892687 | None:intergenic |
| CCTTGTTCGGATTAGCCGCT+TGG | 0.425840 | 2_3:+2895982 | None:intergenic |
| AGAAAGTGGGAGTTTGGGTT+GGG | 0.433667 | 2_3:+2892701 | None:intergenic |
| AAGATCAACACGATCATTCA+AGG | 0.435009 | 2_3:+2895779 | None:intergenic |
| TTTCAAGGAGGCGGAGGAGG+AGG | 0.439528 | 2_3:+2896217 | None:intergenic |
| GTCCCATTTCAAAAGTGCCT+TGG | 0.441437 | 2_3:-2892644 | Msa0271500:three_prime_UTR |
| CCACAACAAAACGGTGTTCA+CGG | 0.442815 | 2_3:-2896341 | Msa0271500:CDS |
| GTGCGAGGAATGAGAGGAGG+AGG | 0.444812 | 2_3:+2896174 | None:intergenic |
| AAGAAAGTGGGAGTTTGGGT+TGG | 0.444979 | 2_3:+2892700 | None:intergenic |
| TCCTCCTCCGCCTCCTTGAA+AGG | 0.447084 | 2_3:-2896215 | Msa0271500:CDS |
| TGGGTGTGATTCCCATGTAC+TGG | 0.459634 | 2_3:+2896069 | None:intergenic |
| GCGCCGGCGGTGGTTCCGGT+GGG | 0.461362 | 2_3:+2896035 | None:intergenic |
| CCGGTGGGGATGTTCGGTGT+GGG | 0.469517 | 2_3:+2896050 | None:intergenic |
| GAATAGAAGACGAATTGTTA+AGG | 0.471564 | 2_3:+2896004 | None:intergenic |
| GATGATGGTGGTGGTGGTCG+TGG | 0.474792 | 2_3:+2896305 | None:intergenic |
| GTGGGTAGTATTGAGGGTGT+TGG | 0.476426 | 2_3:+2896255 | None:intergenic |
| ATTTCAAAAGTGCCTTGGAT+TGG | 0.478261 | 2_3:-2892639 | Msa0271500:three_prime_UTR |
| GTGTTCGTGGGTAGTATTGA+GGG | 0.479052 | 2_3:+2896249 | None:intergenic |
| TGAGAAGTGCGAGGAATGAG+AGG | 0.481107 | 2_3:+2896168 | None:intergenic |
| TGTTGTGGTTGCGGTGGTGG+TGG | 0.481881 | 2_3:+2896356 | None:intergenic |
| GGAATGAGAGGAGGAGGAAG+AGG | 0.483380 | 2_3:+2896180 | None:intergenic |
| GCGGAGGAGGAGGAGCGGGC+TGG | 0.492288 | 2_3:+2896227 | None:intergenic |
| AGCGCCGGCGGTGGTTCCGG+TGG | 0.492615 | 2_3:+2896034 | None:intergenic |
| TGGTGGTTGATTTGTTCTTG+TGG | 0.495915 | 2_3:+2896373 | None:intergenic |
| ATCCCCACCGGAACCACCGC+CGG | 0.497631 | 2_3:-2896038 | Msa0271500:CDS |
| GGTAGTATTGAGGGTGTTGG+TGG | 0.501503 | 2_3:+2896258 | None:intergenic |
| ATTGTTTAACTCCATAGTCA+TGG | 0.506604 | 2_3:-2892915 | Msa0271500:three_prime_UTR |
| CCACCATCATCCTACTCAAA+CGG | 0.512912 | 2_3:-2896293 | Msa0271500:CDS |
| AGGAGGCGGAGGAGGAGGAG+CGG | 0.514175 | 2_3:+2896222 | None:intergenic |
| TTGGAAAATATATTAAATCA+GGG | 0.518586 | 2_3:-2892882 | Msa0271500:three_prime_UTR |
| GGTGTTCGTGGGTAGTATTG+AGG | 0.520345 | 2_3:+2896248 | None:intergenic |
| GAGTAGGATGATGGTGGTGG+TGG | 0.522293 | 2_3:+2896299 | None:intergenic |
| GCAGCAGCAACAGCCTTTCA+AGG | 0.524188 | 2_3:+2896202 | None:intergenic |
| GGAAAGTGAAGCGCCGGCGG+TGG | 0.525730 | 2_3:+2896025 | None:intergenic |
| TACAAGCAGTGTGGATTCGA+TGG | 0.527519 | 2_3:-2893129 | Msa0271500:CDS |
| GCAACAGCCTTTCAAGGAGG+CGG | 0.534740 | 2_3:+2896208 | None:intergenic |
| CGGCTAATCCGAACAAGGTA+GGG | 0.536540 | 2_3:-2895977 | Msa0271500:CDS |
| AGGAGCGGGCTGGTGTTCGT+GGG | 0.537824 | 2_3:+2896237 | None:intergenic |
| GGATCAAGTACGGTGAGTCC+AGG | 0.543071 | 2_3:-2895956 | Msa0271500:CDS |
| AAGGTTAGAAGAAAGAAAGT+GGG | 0.543450 | 2_3:+2892688 | None:intergenic |
| TTGTTTAACTCCATAGTCAT+GGG | 0.543976 | 2_3:-2892914 | Msa0271500:three_prime_UTR |
| TCCGGTGGGGATGTTCGGTG+TGG | 0.545758 | 2_3:+2896049 | None:intergenic |
| AAATGGGACAATTTAAGGTG+AGG | 0.545771 | 2_3:+2892658 | None:intergenic |
| TGCTACCATTGTTGTTGAGA+AGG | 0.546976 | 2_3:-2895847 | Msa0271500:CDS |
| ACAAGTCGGAGTCCAGTACA+TGG | 0.547760 | 2_3:-2896081 | Msa0271500:CDS |
| AGGAAATATTGAATTTACAA+TGG | 0.549858 | 2_3:-2892962 | Msa0271500:three_prime_UTR |
| CCACCGCAACCACAACAAAA+CGG | 0.550821 | 2_3:-2896350 | Msa0271500:CDS |
| CGCCGGCGGTGGTTCCGGTG+GGG | 0.551092 | 2_3:+2896036 | None:intergenic |
| AAGCCGTTTGAGTAGGATGA+TGG | 0.552833 | 2_3:+2896290 | None:intergenic |
| TGAGCATCTTGATAAAATCC+AGG | 0.567636 | 2_3:+2895888 | None:intergenic |
| AGTGGGTGAAGCATCTGGGT+TGG | 0.569651 | 2_3:-2892744 | Msa0271500:three_prime_UTR |
| ACAGCCTTTCAAGGAGGCGG+AGG | 0.570401 | 2_3:+2896211 | None:intergenic |
| ACGGTACATCACAGTAAACC+TGG | 0.574075 | 2_3:+2895938 | None:intergenic |
| GCGGCTAATCCGAACAAGGT+AGG | 0.574345 | 2_3:-2895978 | Msa0271500:CDS |
| AATTAGTGGGTGAAGCATCT+GGG | 0.578054 | 2_3:-2892748 | Msa0271500:three_prime_UTR |
| CCCACACCGAACATCCCCAC+CGG | 0.579667 | 2_3:-2896050 | Msa0271500:CDS |
| GGATGATGAGGACGATTGCG+AGG | 0.580562 | 2_3:+2896144 | None:intergenic |
| GAAGTGCGAGGAATGAGAGG+AGG | 0.587757 | 2_3:+2896171 | None:intergenic |
| GTTGTTGAAGCCGTTTGAGT+AGG | 0.589050 | 2_3:+2896283 | None:intergenic |
| GTAAAGTTAATCCAATTAGT+GGG | 0.600417 | 2_3:-2892761 | Msa0271500:three_prime_UTR |
| TGTTAAGGAAAGTGAAGCGC+CGG | 0.602219 | 2_3:+2896019 | None:intergenic |
| TGGGTAAAACTTCCAATCCA+AGG | 0.606058 | 2_3:+2892627 | None:intergenic |
| ACTTGTTGAAGATCGAATTG+TGG | 0.606321 | 2_3:+2896098 | None:intergenic |
| CTAAACTTTCCAGGTCTCGG+TGG | 0.613280 | 2_3:-2893193 | Msa0271500:intron |
| AACAAGGTAGGGATCAAGTA+CGG | 0.622807 | 2_3:-2895966 | Msa0271500:CDS |
| TTTGAGTAGGATGATGGTGG+TGG | 0.630199 | 2_3:+2896296 | None:intergenic |
| ATGTACCGTGGAATCCCACT+TGG | 0.633226 | 2_3:-2895924 | Msa0271500:CDS |
| AATTCGTCTTCTATTCCAAG+CGG | 0.635939 | 2_3:-2895997 | Msa0271500:CDS |
| ATTAACCTTCTCAACAACAA+TGG | 0.636687 | 2_3:+2895842 | None:intergenic |
| TGACTGCGAGGAGGATGATG+AGG | 0.636980 | 2_3:+2896132 | None:intergenic |
| GCAGCAACAGCCTTTCAAGG+AGG | 0.639181 | 2_3:+2896205 | None:intergenic |
| TAAGGAAAGTGAAGCGCCGG+CGG | 0.645798 | 2_3:+2896022 | None:intergenic |
| CCAAGCGGCTAATCCGAACA+AGG | 0.647350 | 2_3:-2895982 | Msa0271500:CDS |
| GATGATGAGGACGATTGCGA+GGG | 0.654509 | 2_3:+2896145 | None:intergenic |
| AGGTTTACTGTGATGTACCG+TGG | 0.660079 | 2_3:-2895936 | Msa0271500:CDS |
| CAAGTCGGAGTCCAGTACAT+GGG | 0.663508 | 2_3:-2896080 | Msa0271500:CDS |
| CAATTCGATCTTCAACAAGT+CGG | 0.672447 | 2_3:-2896095 | Msa0271500:CDS |
| TTGCGAGGGTGAGAAGTGCG+AGG | 0.682537 | 2_3:+2896159 | None:intergenic |
| GAGAATCAAAATTCATGACA+CGG | 0.682692 | 2_3:+2895727 | None:intergenic |
| CCGTTTGAGTAGGATGATGG+TGG | 0.693410 | 2_3:+2896293 | None:intergenic |
| TCTCTGACTTACAAGCAGTG+TGG | 0.727139 | 2_3:-2893138 | Msa0271500:CDS |
| CAACAAAACGGTGTTCACGG+CGG | 0.750069 | 2_3:-2896338 | Msa0271500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTCTATTTATTTTT+GGG | - | chr2_3:2893853-2893872 | Msa0271500:intron | 10.0% |
| !!! | ATATTCATGAATTTTTTTTA+GGG | + | chr2_3:2894471-2894490 | None:intergenic | 10.0% |
| !!! | AATATTCATGAATTTTTTTT+AGG | + | chr2_3:2894472-2894491 | None:intergenic | 10.0% |
| !!! | ATTTGATAATATCAAAATTA+AGG | + | chr2_3:2894700-2894719 | None:intergenic | 10.0% |
| !! | TATATCATCAATTAAAATTA+TGG | + | chr2_3:2894741-2894760 | None:intergenic | 10.0% |
| !!! | TAATTTTAATTGATGATATA+TGG | - | chr2_3:2894741-2894760 | Msa0271500:intron | 10.0% |
| !!! | AATTTTAATTGATGATATAT+GGG | - | chr2_3:2894742-2894761 | Msa0271500:intron | 10.0% |
| !! | AATAAAATGATAAAATTGTT+AGG | - | chr2_3:2895128-2895147 | Msa0271500:intron | 10.0% |
| !!! | TATTTTTTGTTTTTCAGAAT+TGG | - | chr2_3:2893454-2893473 | Msa0271500:intron | 15.0% |
| !!! | ACTTAATTTTGAACTAAAAA+TGG | + | chr2_3:2893492-2893511 | None:intergenic | 15.0% |
| !! | AAAGAAACAAAAAAAACTTT+CGG | + | chr2_3:2893696-2893715 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTGTTTCTTTTT+TGG | - | chr2_3:2893698-2893717 | Msa0271500:intron | 15.0% |
| !!! | GATTTGATTCTATTTATTTT+TGG | - | chr2_3:2893852-2893871 | Msa0271500:intron | 15.0% |
| !!! | TTTGATTCTATTTATTTTTG+GGG | - | chr2_3:2893854-2893873 | Msa0271500:intron | 15.0% |
| !!! | TACTACTTTTTTTTTTTTGA+AGG | - | chr2_3:2894365-2894384 | Msa0271500:intron | 15.0% |
| !!! | TATTCATGAATTTTTTTTAG+GGG | + | chr2_3:2894470-2894489 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAAAAGTTCCA+GGG | - | chr2_3:2894537-2894556 | Msa0271500:intron | 15.0% |
| !!! | TTTTTTACAGGAAAATTAAT+AGG | + | chr2_3:2894578-2894597 | None:intergenic | 15.0% |
| !! | ATATAAAAAACATATACTAG+TGG | - | chr2_3:2894997-2895016 | Msa0271500:intron | 15.0% |
| !! | AAATAATGAATGATTTAGAA+TGG | - | chr2_3:2895102-2895121 | Msa0271500:intron | 15.0% |
| !!! | AATAATGAATGATTTAGAAT+GGG | - | chr2_3:2895103-2895122 | Msa0271500:intron | 15.0% |
| !!! | AATTTTTATCTACTTCTTTT+AGG | - | chr2_3:2895315-2895334 | Msa0271500:intron | 15.0% |
| !! | AAAAGGATTAATTAATCTAA+GGG | + | chr2_3:2895396-2895415 | None:intergenic | 15.0% |
| !! | AATGTATATGAAATAAGATT+TGG | + | chr2_3:2895461-2895480 | None:intergenic | 15.0% |
| !! | ATGATCAATAGTTAATATAT+TGG | + | chr2_3:2895911-2895930 | None:intergenic | 15.0% |
| !!! | TCATTTCTTCAATTAATTTT+AGG | - | chr2_3:2896110-2896129 | Msa0271500:CDS | 15.0% |
| !! | TTTGGAAAATATATTAAATC+AGG | - | chr2_3:2896244-2896263 | Msa0271500:CDS | 15.0% |
| !! | TTGGAAAATATATTAAATCA+GGG | - | chr2_3:2896245-2896264 | Msa0271500:CDS | 15.0% |
| !!! | ATTTTTTTTTTTCCTTACAA+TGG | + | chr2_3:2896325-2896344 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTCTTTTTTGGA+AGG | - | chr2_3:2893702-2893721 | Msa0271500:intron | 20.0% |
| !!! | TTTTACGATCTTTGTTTTTT+TGG | - | chr2_3:2893942-2893961 | Msa0271500:intron | 20.0% |
| !!! | TTTACGATCTTTGTTTTTTT+GGG | - | chr2_3:2893943-2893962 | Msa0271500:intron | 20.0% |
| !! | ACAGTGATAATTAAATATCA+CGG | + | chr2_3:2894172-2894191 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTTTTTTGAAGG+AGG | - | chr2_3:2894368-2894387 | Msa0271500:intron | 20.0% |
| !!! | CTGGAACTTTTTTTTTTTTA+AGG | + | chr2_3:2894538-2894557 | None:intergenic | 20.0% |
| !! | CTTAAAAAAAAAAAAGTTCC+AGG | - | chr2_3:2894536-2894555 | Msa0271500:intron | 20.0% |
| !!! | TTAATAGGCATTTTTTTTAC+AGG | + | chr2_3:2894590-2894609 | None:intergenic | 20.0% |
| !! | ATATCAAAATTAAGGTGATA+AGG | + | chr2_3:2894692-2894711 | None:intergenic | 20.0% |
| !! | CCATACTCAATTATTAAAAA+AGG | + | chr2_3:2894768-2894787 | None:intergenic | 20.0% |
| !!! | CCTTTTTTAATAATTGAGTA+TGG | - | chr2_3:2894765-2894784 | Msa0271500:intron | 20.0% |
| !! | TAGTGAAATATTCAATTTCA+AGG | - | chr2_3:2894943-2894962 | Msa0271500:intron | 20.0% |
| !! | AGTGAAATATTCAATTTCAA+GGG | - | chr2_3:2894944-2894963 | Msa0271500:intron | 20.0% |
| !!! | ATTATTTTGCCATATAAGAT+GGG | + | chr2_3:2895089-2895108 | None:intergenic | 20.0% |
| !! | GAAAAGGATTAATTAATCTA+AGG | + | chr2_3:2895397-2895416 | None:intergenic | 20.0% |
| !!! | ATTTTTGAAGTTAGATGAAA+CGG | + | chr2_3:2895551-2895570 | None:intergenic | 20.0% |
| !! | TTCATTGCTTAAAATACAAA+AGG | + | chr2_3:2895757-2895776 | None:intergenic | 20.0% |
| !! | TGGAGTAAATAACAATTTAA+AGG | + | chr2_3:2895819-2895838 | None:intergenic | 20.0% |
| !! | ACATAAAGAAAATAGGAAAT+TGG | + | chr2_3:2895839-2895858 | None:intergenic | 20.0% |
| !! | ACATGAAACATAAAGAAAAT+AGG | + | chr2_3:2895846-2895865 | None:intergenic | 20.0% |
| !! | GAGAAATTAAGTGAAAATTA+AGG | + | chr2_3:2896081-2896100 | None:intergenic | 20.0% |
| !! | AGGAAATATTGAATTTACAA+TGG | - | chr2_3:2896165-2896184 | Msa0271500:CDS | 20.0% |
| !!! | TTTTGCATAAACGTTTTATT+TGG | - | chr2_3:2896293-2896312 | Msa0271500:CDS | 20.0% |
| !! | TTGTGAATAGTACTATTTCT+GGG | + | chr2_3:2892722-2892741 | None:intergenic | 25.0% |
| ! | TTTGTGAATAGTACTATTTC+TGG | + | chr2_3:2892723-2892742 | None:intergenic | 25.0% |
| ! | AAGAAAATTACCTCAACATT+AGG | + | chr2_3:2893425-2893444 | None:intergenic | 25.0% |
| !!! | GTAAATCTTCACTTTGATTT+TGG | - | chr2_3:2893510-2893529 | Msa0271500:intron | 25.0% |
| !! | TTTGTCTTTATTTCTTCCTT+AGG | - | chr2_3:2893660-2893679 | Msa0271500:intron | 25.0% |
| ! | TAGAATCAAATCAAACTAGA+TGG | + | chr2_3:2893844-2893863 | None:intergenic | 25.0% |
| !!! | TTACGATCTTTGTTTTTTTG+GGG | - | chr2_3:2893944-2893963 | Msa0271500:intron | 25.0% |
| !!! | TTTTTTTTTTAAGGAAACCC+TGG | + | chr2_3:2894529-2894548 | None:intergenic | 25.0% |
| ! | CATTTGTGGTCATAATTAAT+AGG | + | chr2_3:2894605-2894624 | None:intergenic | 25.0% |
| ! | AAATTAAGGTGATAAGGAAA+AGG | + | chr2_3:2894686-2894705 | None:intergenic | 25.0% |
| ! | AAAACATATACTAGTGGAAT+AGG | - | chr2_3:2895003-2895022 | Msa0271500:intron | 25.0% |
| !! | ATACAGTACCTTAGTATTTT+TGG | + | chr2_3:2895039-2895058 | None:intergenic | 25.0% |
| !!! | AAAAATACTAAGGTACTGTA+TGG | - | chr2_3:2895038-2895057 | Msa0271500:intron | 25.0% |
| !!! | AAAATACTAAGGTACTGTAT+GGG | - | chr2_3:2895039-2895058 | Msa0271500:intron | 25.0% |
| !!! | CATTATTTTGCCATATAAGA+TGG | + | chr2_3:2895090-2895109 | None:intergenic | 25.0% |
| !! | ACATATTTCTAAAGGAAAAC+AGG | + | chr2_3:2895282-2895301 | None:intergenic | 25.0% |
| !! | TTCCTTTAGAAATATGTACA+TGG | - | chr2_3:2895285-2895304 | Msa0271500:intron | 25.0% |
| !! | ATCCATGTACATATTTCTAA+AGG | + | chr2_3:2895290-2895309 | None:intergenic | 25.0% |
| ! | TTTAAGAGAGATGAAAGAAA+AGG | + | chr2_3:2895413-2895432 | None:intergenic | 25.0% |
| ! | ACATTGATACTATAAGATGT+TGG | - | chr2_3:2895509-2895528 | Msa0271500:intron | 25.0% |
| !!! | TTTTTGAAGTTAGATGAAAC+GGG | + | chr2_3:2895550-2895569 | None:intergenic | 25.0% |
| ! | TCATCTAACTTCAAAAATCA+AGG | - | chr2_3:2895553-2895572 | Msa0271500:intron | 25.0% |
| ! | CCTAAAAAGTTTACACATAT+TGG | + | chr2_3:2895623-2895642 | None:intergenic | 25.0% |
| !! | CCAATATGTGTAAACTTTTT+AGG | - | chr2_3:2895620-2895639 | Msa0271500:intron | 25.0% |
| ! | TAAAATACAAAAGGAAGATG+AGG | + | chr2_3:2895748-2895767 | None:intergenic | 25.0% |
| !! | ACAATTTAAAGGCACAAAAT+AGG | + | chr2_3:2895808-2895827 | None:intergenic | 25.0% |
| !!! | AATTTTAGGAAGAAATGAGT+AGG | - | chr2_3:2896124-2896143 | Msa0271500:CDS | 25.0% |
| !!! | ATTTTAGGAAGAAATGAGTA+GGG | - | chr2_3:2896125-2896144 | Msa0271500:CDS | 25.0% |
| ! | TTTACAATGGCTATCAAAAA+AGG | - | chr2_3:2896178-2896197 | Msa0271500:CDS | 25.0% |
| ! | ATTGGATTAACTTTACAGTT+TGG | + | chr2_3:2896362-2896381 | None:intergenic | 25.0% |
| ! | TGTAAAGTTAATCCAATTAG+TGG | - | chr2_3:2896365-2896384 | Msa0271500:CDS | 25.0% |
| ! | GTAAAGTTAATCCAATTAGT+GGG | - | chr2_3:2896366-2896385 | Msa0271500:CDS | 25.0% |
| !!! | TTTTGAAATGGGACAATTTA+AGG | + | chr2_3:2896477-2896496 | None:intergenic | 25.0% |
| ! | ATTTCTGGGTTTGTAAGAAT+TGG | + | chr2_3:2892708-2892727 | None:intergenic | 30.0% |
| !!! | AGATCGAATTGTGGTTTTTT+GGG | + | chr2_3:2893023-2893042 | None:intergenic | 30.0% |
| !!! | AAGATCGAATTGTGGTTTTT+TGG | + | chr2_3:2893024-2893043 | None:intergenic | 30.0% |
| GAATAGAAGACGAATTGTTA+AGG | + | chr2_3:2893126-2893145 | None:intergenic | 30.0% | |
| ATTAACCTTCTCAACAACAA+TGG | + | chr2_3:2893288-2893307 | None:intergenic | 30.0% | |
| GAGAATCAAAATTCATGACA+CGG | + | chr2_3:2893403-2893422 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTCCTAATGTTG+AGG | - | chr2_3:2893412-2893431 | Msa0271500:intron | 30.0% |
| TGTAGAAGAATGCAACATTA+TGG | - | chr2_3:2893540-2893559 | Msa0271500:intron | 30.0% | |
| GTAGAAGAATGCAACATTAT+GGG | - | chr2_3:2893541-2893560 | Msa0271500:intron | 30.0% | |
| !!! | ATGGGATTGTGTTTTTTTAG+CGG | - | chr2_3:2893559-2893578 | Msa0271500:intron | 30.0% |
| TTGGAAGGAAAAAGTTAGTT+TGG | - | chr2_3:2893717-2893736 | Msa0271500:intron | 30.0% | |
| GAAAATAGCATGAGTTTAAC+TGG | - | chr2_3:2893805-2893824 | Msa0271500:intron | 30.0% | |
| GATAAGATGGTAAAATAGTG+CGG | - | chr2_3:2893976-2893995 | Msa0271500:intron | 30.0% | |
| GTGCATAATTAGAGTTTAAC+CGG | - | chr2_3:2894023-2894042 | Msa0271500:intron | 30.0% | |
| AATTAGAGTTTAACCGGATT+TGG | - | chr2_3:2894029-2894048 | Msa0271500:intron | 30.0% | |
| AGTAGATAGATAAAAGTTCC+AGG | - | chr2_3:2894508-2894527 | Msa0271500:intron | 30.0% | |
| GTAGATAGATAAAAGTTCCA+GGG | - | chr2_3:2894509-2894528 | Msa0271500:intron | 30.0% | |
| ! | CTCTTTTATATATTCGTCTC+TGG | - | chr2_3:2894815-2894834 | Msa0271500:intron | 30.0% |
| ATACTAGTGGAATAGGAATT+CGG | - | chr2_3:2895010-2895029 | Msa0271500:intron | 30.0% | |
| ATTGTGCTCACATTACTATA+GGG | + | chr2_3:2895359-2895378 | None:intergenic | 30.0% | |
| AATTGTGCTCACATTACTAT+AGG | + | chr2_3:2895360-2895379 | None:intergenic | 30.0% | |
| ! | TTTAAAGGCACAAAATAGGA+AGG | + | chr2_3:2895804-2895823 | None:intergenic | 30.0% |
| ATTGTTTAACTCCATAGTCA+TGG | - | chr2_3:2896212-2896231 | Msa0271500:CDS | 30.0% | |
| TTGTTTAACTCCATAGTCAT+GGG | - | chr2_3:2896213-2896232 | Msa0271500:CDS | 30.0% | |
| AAAAAAAACACCCATGACTA+TGG | + | chr2_3:2896226-2896245 | None:intergenic | 30.0% | |
| !!! | TAGTCATGGGTGTTTTTTTT+TGG | - | chr2_3:2896226-2896245 | Msa0271500:CDS | 30.0% |
| ATTTGGTTACTTCCATTGTA+AGG | - | chr2_3:2896310-2896329 | Msa0271500:CDS | 30.0% | |
| TAACTTTACAGTTTGGATAC+TGG | + | chr2_3:2896355-2896374 | None:intergenic | 30.0% | |
| AAGGTTAGAAGAAAGAAAGT+GGG | + | chr2_3:2896442-2896461 | None:intergenic | 30.0% | |
| AAAGGTTAGAAGAAAGAAAG+TGG | + | chr2_3:2896443-2896462 | None:intergenic | 30.0% | |
| ! | TTTAAGGTGAGGAAACAAAA+AGG | + | chr2_3:2896461-2896480 | None:intergenic | 30.0% |
| GTGAGAACGAAAGATTGATT+TGG | + | chr2_3:2892666-2892685 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAAGATCGAATTG+TGG | + | chr2_3:2893032-2893051 | None:intergenic | 35.0% |
| CAATTCGATCTTCAACAAGT+CGG | - | chr2_3:2893032-2893051 | Msa0271500:three_prime_UTR | 35.0% | |
| AATTCGTCTTCTATTCCAAG+CGG | - | chr2_3:2893130-2893149 | Msa0271500:CDS | 35.0% | |
| TGAGCATCTTGATAAAATCC+AGG | + | chr2_3:2893242-2893261 | None:intergenic | 35.0% | |
| AAGATCAACACGATCATTCA+AGG | + | chr2_3:2893351-2893370 | None:intergenic | 35.0% | |
| !! | TCGTGTTGATCTTAGAGTTT+TGG | - | chr2_3:2893358-2893377 | Msa0271500:intron | 35.0% |
| !! | CGTGTTGATCTTAGAGTTTT+GGG | - | chr2_3:2893359-2893378 | Msa0271500:intron | 35.0% |
| TTTGTAATTCCCCGTAATTG+TGG | - | chr2_3:2893897-2893916 | Msa0271500:intron | 35.0% | |
| ACAAAGAATCGCCACAATTA+CGG | + | chr2_3:2893911-2893930 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTTGGGGTCTACAT+AGG | - | chr2_3:2893954-2893973 | Msa0271500:intron | 35.0% |
| ATGGTAAAATAGTGCGGATA+TGG | - | chr2_3:2893982-2894001 | Msa0271500:intron | 35.0% | |
| TAAAATAGTGCGGATATGGT+AGG | - | chr2_3:2893986-2894005 | Msa0271500:intron | 35.0% | |
| ! | TATGACCACAAATGCTGATT+TGG | - | chr2_3:2894611-2894630 | Msa0271500:intron | 35.0% |
| AAAGACCAAATCAGCATTTG+TGG | + | chr2_3:2894619-2894638 | None:intergenic | 35.0% | |
| TACTAGTGGAATAGGAATTC+GGG | - | chr2_3:2895011-2895030 | Msa0271500:intron | 35.0% | |
| TTCGGGAACCAAAAATACTA+AGG | - | chr2_3:2895028-2895047 | Msa0271500:intron | 35.0% | |
| AGTGGAAAGATTGATGTTTG+AGG | - | chr2_3:2895062-2895081 | Msa0271500:intron | 35.0% | |
| !! | TACCAAGTTCTAAATCACGT+GGG | + | chr2_3:2895155-2895174 | None:intergenic | 35.0% |
| !! | AAGGGTGTTTGTTGATAACA+TGG | + | chr2_3:2895212-2895231 | None:intergenic | 35.0% |
| ATGACATATTGAACTTGAGC+TGG | + | chr2_3:2895240-2895259 | None:intergenic | 35.0% | |
| !! | CTACTTCTTTTAGGTGTCTT+TGG | - | chr2_3:2895324-2895343 | Msa0271500:intron | 35.0% |
| ATACAAAAGGAAGATGAGGA+GGG | + | chr2_3:2895744-2895763 | None:intergenic | 35.0% | |
| AATACAAAAGGAAGATGAGG+AGG | + | chr2_3:2895745-2895764 | None:intergenic | 35.0% | |
| GATCATGAACTAAACTTTCC+AGG | - | chr2_3:2895925-2895944 | Msa0271500:CDS | 35.0% | |
| TAAGTCAGAGATTGCTTTCT+TGG | + | chr2_3:2895980-2895999 | None:intergenic | 35.0% | |
| GGGAAAAAACAGTTGATTAG+AGG | - | chr2_3:2896145-2896164 | Msa0271500:CDS | 35.0% | |
| AAGAAAGAAAGTGGGAGTTT+GGG | + | chr2_3:2896434-2896453 | None:intergenic | 35.0% | |
| ! | AAATGGGACAATTTAAGGTG+AGG | + | chr2_3:2896472-2896491 | None:intergenic | 35.0% |
| !!! | ATCCAAGGCACTTTTGAAAT+GGG | + | chr2_3:2896488-2896507 | None:intergenic | 35.0% |
| !! | AATCCAAGGCACTTTTGAAA+TGG | + | chr2_3:2896489-2896508 | None:intergenic | 35.0% |
| !! | ATTTCAAAAGTGCCTTGGAT+TGG | - | chr2_3:2896488-2896507 | Msa0271500:five_prime_UTR | 35.0% |
| !! | TGGTGGTTGATTTGTTCTTG+TGG | + | chr2_3:2892757-2892776 | None:intergenic | 40.0% |
| TACTTGATCCCTACCTTGTT+CGG | + | chr2_3:2893161-2893180 | None:intergenic | 40.0% | |
| AACAAGGTAGGGATCAAGTA+CGG | - | chr2_3:2893161-2893180 | Msa0271500:CDS | 40.0% | |
| ! | GAACTGAAGCTTTTCCAAGT+GGG | + | chr2_3:2893220-2893239 | None:intergenic | 40.0% |
| ! | TGCTACCATTGTTGTTGAGA+AGG | - | chr2_3:2893280-2893299 | Msa0271500:intron | 40.0% |
| !!! | CTTAGAGTTTTGGGTGATGT+TGG | - | chr2_3:2893368-2893387 | Msa0271500:intron | 40.0% |
| !!! | GGATTGTGTTTTTTTAGCGG+TGG | - | chr2_3:2893562-2893581 | Msa0271500:intron | 40.0% |
| !!! | TTGTGTTTTTTTAGCGGTGG+TGG | - | chr2_3:2893565-2893584 | Msa0271500:intron | 40.0% |
| AAAGAATCGCCACAATTACG+GGG | + | chr2_3:2893909-2893928 | None:intergenic | 40.0% | |
| CAAAGAATCGCCACAATTAC+GGG | + | chr2_3:2893910-2893929 | None:intergenic | 40.0% | |
| TTGTGGCGATTCTTTGTGAA+AGG | - | chr2_3:2893914-2893933 | Msa0271500:intron | 40.0% | |
| GGATATGGTAGGTTAGGTTA+GGG | - | chr2_3:2893997-2894016 | Msa0271500:intron | 40.0% | |
| AACCAGCACATATCCAAATC+CGG | + | chr2_3:2894045-2894064 | None:intergenic | 40.0% | |
| !! | TATGTGCTGGTTGCAATTAG+AGG | - | chr2_3:2894053-2894072 | Msa0271500:intron | 40.0% |
| GGCATTTGTAAAGATAACCC+TGG | + | chr2_3:2894557-2894576 | None:intergenic | 40.0% | |
| CTGTACGATATGACTCATGT+GGG | + | chr2_3:2894653-2894672 | None:intergenic | 40.0% | |
| ACTGTACGATATGACTCATG+TGG | + | chr2_3:2894654-2894673 | None:intergenic | 40.0% | |
| TATGCTAGCACACATCAATG+AGG | + | chr2_3:2894875-2894894 | None:intergenic | 40.0% | |
| GTTTGAGGACCCATCTTATA+TGG | - | chr2_3:2895077-2895096 | Msa0271500:intron | 40.0% | |
| !! | ACCAAGTTCTAAATCACGTG+GGG | + | chr2_3:2895154-2895173 | None:intergenic | 40.0% |
| !! | CTACCAAGTTCTAAATCACG+TGG | + | chr2_3:2895156-2895175 | None:intergenic | 40.0% |
| ! | GTGATTTAGAACTTGGTAGC+TGG | - | chr2_3:2895157-2895176 | Msa0271500:intron | 40.0% |
| !! | TTGTTGATAACATGGTGCAG+TGG | + | chr2_3:2895204-2895223 | None:intergenic | 40.0% |
| TCACATGGTGAAGACTTTCT+TGG | + | chr2_3:2895646-2895665 | None:intergenic | 40.0% | |
| CATGTGACTATCCTCTTTGT+GGG | - | chr2_3:2895659-2895678 | Msa0271500:intron | 40.0% | |
| ATGTGACTATCCTCTTTGTG+GGG | - | chr2_3:2895660-2895679 | Msa0271500:intron | 40.0% | |
| TGCATGTTCACATTAGCAGA+AGG | + | chr2_3:2895713-2895732 | None:intergenic | 40.0% | |
| TACAAAAGGAAGATGAGGAG+GGG | + | chr2_3:2895743-2895762 | None:intergenic | 40.0% | |
| ! | AAAGGCACAAAATAGGAAGG+AGG | + | chr2_3:2895801-2895820 | None:intergenic | 40.0% |
| GAACTAAACTTTCCAGGTCT+CGG | - | chr2_3:2895931-2895950 | Msa0271500:CDS | 40.0% | |
| ! | AATTAGTGGGTGAAGCATCT+GGG | - | chr2_3:2896379-2896398 | Msa0271500:CDS | 40.0% |
| GAAGAAAGAAAGTGGGAGTT+TGG | + | chr2_3:2896435-2896454 | None:intergenic | 40.0% | |
| !! | ACACCGTTTTGTTGTGGTTG+CGG | + | chr2_3:2892783-2892802 | None:intergenic | 45.0% |
| CCACAACAAAACGGTGTTCA+CGG | - | chr2_3:2892786-2892805 | Msa0271500:three_prime_UTR | 45.0% | |
| !! | TTTGAGTAGGATGATGGTGG+TGG | + | chr2_3:2892834-2892853 | None:intergenic | 45.0% |
| CCACCATCATCCTACTCAAA+CGG | - | chr2_3:2892834-2892853 | Msa0271500:three_prime_UTR | 45.0% | |
| AAGCCGTTTGAGTAGGATGA+TGG | + | chr2_3:2892840-2892859 | None:intergenic | 45.0% | |
| GTTGTTGAAGCCGTTTGAGT+AGG | + | chr2_3:2892847-2892866 | None:intergenic | 45.0% | |
| ! | GTGTTCGTGGGTAGTATTGA+GGG | + | chr2_3:2892881-2892900 | None:intergenic | 45.0% |
| !!! | GTTTTTTGGGTTTGACTGCG+AGG | + | chr2_3:2893010-2893029 | None:intergenic | 45.0% |
| TGTTAAGGAAAGTGAAGCGC+CGG | + | chr2_3:2893111-2893130 | None:intergenic | 45.0% | |
| ACGGTACATCACAGTAAACC+TGG | + | chr2_3:2893192-2893211 | None:intergenic | 45.0% | |
| AGGTTTACTGTGATGTACCG+TGG | - | chr2_3:2893191-2893210 | Msa0271500:intron | 45.0% | |
| ! | CTTTTCCAAGTGGGATTCCA+CGG | + | chr2_3:2893211-2893230 | None:intergenic | 45.0% |
| ! | GGAACTGAAGCTTTTCCAAG+TGG | + | chr2_3:2893221-2893240 | None:intergenic | 45.0% |
| CTTGGAAAAGCTTCAGTTCC+TGG | - | chr2_3:2893221-2893240 | Msa0271500:intron | 45.0% | |
| !!! | TGTTTTTTTAGCGGTGGTGG+TGG | - | chr2_3:2893568-2893587 | Msa0271500:intron | 45.0% |
| AGCAATGTGTGTGAGTCAGT+GGG | + | chr2_3:2893622-2893641 | None:intergenic | 45.0% | |
| AAGCAATGTGTGTGAGTCAG+TGG | + | chr2_3:2893623-2893642 | None:intergenic | 45.0% | |
| GGGGTCTACATAGGATAAGA+TGG | - | chr2_3:2893963-2893982 | Msa0271500:intron | 45.0% | |
| TAGTGCGGATATGGTAGGTT+AGG | - | chr2_3:2893991-2894010 | Msa0271500:intron | 45.0% | |
| CGGATATGGTAGGTTAGGTT+AGG | - | chr2_3:2893996-2894015 | Msa0271500:intron | 45.0% | |
| AACCGGATTTGGATATGTGC+TGG | - | chr2_3:2894040-2894059 | Msa0271500:intron | 45.0% | |
| TTCGTCTCTGGATAGCATTG+TGG | - | chr2_3:2894827-2894846 | Msa0271500:intron | 45.0% | |
| TCTGGATAGCATTGTGGCAA+TGG | - | chr2_3:2894833-2894852 | Msa0271500:intron | 45.0% | |
| GCACACATCAATGAGGCTAT+TGG | + | chr2_3:2894868-2894887 | None:intergenic | 45.0% | |
| !! | ACTAAGGTACTGTATGGGAG+TGG | - | chr2_3:2895044-2895063 | Msa0271500:intron | 45.0% |
| TGATAACATGGTGCAGTGGT+TGG | + | chr2_3:2895200-2895219 | None:intergenic | 45.0% | |
| GAACTTGAGCTGGCGATAAA+GGG | + | chr2_3:2895230-2895249 | None:intergenic | 45.0% | |
| TGAACTTGAGCTGGCGATAA+AGG | + | chr2_3:2895231-2895250 | None:intergenic | 45.0% | |
| CCACAAAGAGGATAGTCACA+TGG | + | chr2_3:2895661-2895680 | None:intergenic | 45.0% | |
| CCATGTGACTATCCTCTTTG+TGG | - | chr2_3:2895658-2895677 | Msa0271500:intron | 45.0% | |
| ACAAAAGGAAGATGAGGAGG+GGG | + | chr2_3:2895742-2895761 | None:intergenic | 45.0% | |
| TCTCTGACTTACAAGCAGTG+TGG | - | chr2_3:2895989-2896008 | Msa0271500:CDS | 45.0% | |
| TACAAGCAGTGTGGATTCGA+TGG | - | chr2_3:2895998-2896017 | Msa0271500:CDS | 45.0% | |
| CAGATGCTTCACCCACTAAT+TGG | + | chr2_3:2896380-2896399 | None:intergenic | 45.0% | |
| ! | CAATTAGTGGGTGAAGCATC+TGG | - | chr2_3:2896378-2896397 | Msa0271500:CDS | 45.0% |
| ! | AGAAAGTGGGAGTTTGGGTT+GGG | + | chr2_3:2896429-2896448 | None:intergenic | 45.0% |
| AAGAAAGTGGGAGTTTGGGT+TGG | + | chr2_3:2896430-2896449 | None:intergenic | 45.0% | |
| !! | GTCCCATTTCAAAAGTGCCT+TGG | - | chr2_3:2896483-2896502 | Msa0271500:five_prime_UTR | 45.0% |
| !! | TTTTGTTGTGGTTGCGGTGG+TGG | + | chr2_3:2892777-2892796 | None:intergenic | 50.0% |
| CCACCGCAACCACAACAAAA+CGG | - | chr2_3:2892777-2892796 | Msa0271500:three_prime_UTR | 50.0% | |
| !! | CCGTGAACACCGTTTTGTTG+TGG | + | chr2_3:2892789-2892808 | None:intergenic | 50.0% |
| CAACAAAACGGTGTTCACGG+CGG | - | chr2_3:2892789-2892808 | Msa0271500:three_prime_UTR | 50.0% | |
| ! | CCGTTTGAGTAGGATGATGG+TGG | + | chr2_3:2892837-2892856 | None:intergenic | 50.0% |
| !! | AGTATTGAGGGTGTTGGTGG+TGG | + | chr2_3:2892869-2892888 | None:intergenic | 50.0% |
| !! | GGTAGTATTGAGGGTGTTGG+TGG | + | chr2_3:2892872-2892891 | None:intergenic | 50.0% |
| ! | GTGGGTAGTATTGAGGGTGT+TGG | + | chr2_3:2892875-2892894 | None:intergenic | 50.0% |
| GGTGTTCGTGGGTAGTATTG+AGG | + | chr2_3:2892882-2892901 | None:intergenic | 50.0% | |
| ! | TGAGAAGTGCGAGGAATGAG+AGG | + | chr2_3:2892962-2892981 | None:intergenic | 50.0% |
| GATGATGAGGACGATTGCGA+GGG | + | chr2_3:2892985-2893004 | None:intergenic | 50.0% | |
| !!! | TTTTGGGTTTGACTGCGAGG+AGG | + | chr2_3:2893007-2893026 | None:intergenic | 50.0% |
| ACAAGTCGGAGTCCAGTACA+TGG | - | chr2_3:2893046-2893065 | Msa0271500:three_prime_UTR | 50.0% | |
| CAAGTCGGAGTCCAGTACAT+GGG | - | chr2_3:2893047-2893066 | Msa0271500:three_prime_UTR | 50.0% | |
| TGGGTGTGATTCCCATGTAC+TGG | + | chr2_3:2893061-2893080 | None:intergenic | 50.0% | |
| CGGCTAATCCGAACAAGGTA+GGG | - | chr2_3:2893150-2893169 | Msa0271500:CDS | 50.0% | |
| ATGTACCGTGGAATCCCACT+TGG | - | chr2_3:2893203-2893222 | Msa0271500:intron | 50.0% | |
| !!! | TTTTTTAGCGGTGGTGGTGG+TGG | - | chr2_3:2893571-2893590 | Msa0271500:intron | 50.0% |
| !!! | TTTTTAGCGGTGGTGGTGGT+GGG | - | chr2_3:2893572-2893591 | Msa0271500:intron | 50.0% |
| GCAATGTGTGTGAGTCAGTG+GGG | + | chr2_3:2893621-2893640 | None:intergenic | 50.0% | |
| ! | GCCCCACGTGATTTAGAACT+TGG | - | chr2_3:2895150-2895169 | Msa0271500:intron | 50.0% |
| GTAGCTGGATTCCAAGACCA+GGG | - | chr2_3:2895172-2895191 | Msa0271500:intron | 50.0% | |
| TATCCTCTTTGTGGGGCACA+TGG | - | chr2_3:2895667-2895686 | Msa0271500:intron | 50.0% | |
| ATCCTCTTTGTGGGGCACAT+GGG | - | chr2_3:2895668-2895687 | Msa0271500:intron | 50.0% | |
| GGCACATGGGGTGATAGTAA+TGG | - | chr2_3:2895681-2895700 | Msa0271500:intron | 50.0% | |
| CTAAACTTTCCAGGTCTCGG+TGG | - | chr2_3:2895934-2895953 | Msa0271500:CDS | 50.0% | |
| !! | CCGTTTTGTTGTGGTTGCGG+TGG | + | chr2_3:2892780-2892799 | None:intergenic | 55.0% |
| !! | GAGTAGGATGATGGTGGTGG+TGG | + | chr2_3:2892831-2892850 | None:intergenic | 55.0% |
| GCAACAGCCTTTCAAGGAGG+CGG | + | chr2_3:2892922-2892941 | None:intergenic | 55.0% | |
| GCAGCAACAGCCTTTCAAGG+AGG | + | chr2_3:2892925-2892944 | None:intergenic | 55.0% | |
| GCAGCAGCAACAGCCTTTCA+AGG | + | chr2_3:2892928-2892947 | None:intergenic | 55.0% | |
| GGAATGAGAGGAGGAGGAAG+AGG | + | chr2_3:2892950-2892969 | None:intergenic | 55.0% | |
| GAAGTGCGAGGAATGAGAGG+AGG | + | chr2_3:2892959-2892978 | None:intergenic | 55.0% | |
| GGATGATGAGGACGATTGCG+AGG | + | chr2_3:2892986-2893005 | None:intergenic | 55.0% | |
| TGACTGCGAGGAGGATGATG+AGG | + | chr2_3:2892998-2893017 | None:intergenic | 55.0% | |
| !! | TAAGGAAAGTGAAGCGCCGG+CGG | + | chr2_3:2893108-2893127 | None:intergenic | 55.0% |
| !! | CCTTGTTCGGATTAGCCGCT+TGG | + | chr2_3:2893148-2893167 | None:intergenic | 55.0% |
| CCAAGCGGCTAATCCGAACA+AGG | - | chr2_3:2893145-2893164 | Msa0271500:CDS | 55.0% | |
| GCGGCTAATCCGAACAAGGT+AGG | - | chr2_3:2893149-2893168 | Msa0271500:CDS | 55.0% | |
| GGATCAAGTACGGTGAGTCC+AGG | - | chr2_3:2893171-2893190 | Msa0271500:CDS | 55.0% | |
| !!! | TTTTAGCGGTGGTGGTGGTG+GGG | - | chr2_3:2893573-2893592 | Msa0271500:intron | 55.0% |
| ! | TTTCGGCGCACGTTAGCCTA+AGG | + | chr2_3:2893679-2893698 | None:intergenic | 55.0% |
| GGTAGCTGGATTCCAAGACC+AGG | - | chr2_3:2895171-2895190 | Msa0271500:intron | 55.0% | |
| ! | AGTGGTTGGTACCCTGGTCT+TGG | + | chr2_3:2895186-2895205 | None:intergenic | 55.0% |
| TCCTCTTTGTGGGGCACATG+GGG | - | chr2_3:2895669-2895688 | Msa0271500:intron | 55.0% | |
| TAGCACAATCCACCGAGACC+TGG | + | chr2_3:2895946-2895965 | None:intergenic | 55.0% | |
| ! | AGTGGGTGAAGCATCTGGGT+TGG | - | chr2_3:2896383-2896402 | Msa0271500:exon | 55.0% |
| ! | TGTTGTGGTTGCGGTGGTGG+TGG | + | chr2_3:2892774-2892793 | None:intergenic | 60.0% |
| !! | GATGATGGTGGTGGTGGTCG+TGG | + | chr2_3:2892825-2892844 | None:intergenic | 60.0% |
| TTTCAAGGAGGCGGAGGAGG+AGG | + | chr2_3:2892913-2892932 | None:intergenic | 60.0% | |
| TCCTCCTCCGCCTCCTTGAA+AGG | - | chr2_3:2892912-2892931 | Msa0271500:three_prime_UTR | 60.0% | |
| ACAGCCTTTCAAGGAGGCGG+AGG | + | chr2_3:2892919-2892938 | None:intergenic | 60.0% | |
| GTGCGAGGAATGAGAGGAGG+AGG | + | chr2_3:2892956-2892975 | None:intergenic | 60.0% | |
| ! | TTGCGAGGGTGAGAAGTGCG+AGG | + | chr2_3:2892971-2892990 | None:intergenic | 60.0% |
| GTGGTTCCGGTGGGGATGTT+CGG | + | chr2_3:2893086-2893105 | None:intergenic | 60.0% | |
| GTGTGTGAGTCAGTGGGGTG+TGG | + | chr2_3:2893616-2893635 | None:intergenic | 60.0% | |
| ! | TGGTGCAGTGGTTGGTACCC+TGG | + | chr2_3:2895192-2895211 | None:intergenic | 60.0% |
| ACCCCATGTGCCCCACAAAG+AGG | + | chr2_3:2895673-2895692 | None:intergenic | 60.0% | |
| !! | AGGAGCGGGCTGGTGTTCGT+GGG | + | chr2_3:2892893-2892912 | None:intergenic | 65.0% |
| GCCTTTCAAGGAGGCGGAGG+AGG | + | chr2_3:2892916-2892935 | None:intergenic | 65.0% | |
| !! | CCGGTGGGGATGTTCGGTGT+GGG | + | chr2_3:2893080-2893099 | None:intergenic | 65.0% |
| CCCACACCGAACATCCCCAC+CGG | - | chr2_3:2893077-2893096 | Msa0271500:three_prime_UTR | 65.0% | |
| ! | TCCGGTGGGGATGTTCGGTG+TGG | + | chr2_3:2893081-2893100 | None:intergenic | 65.0% |
| !! | GAGGAGCGGGCTGGTGTTCG+TGG | + | chr2_3:2892894-2892913 | None:intergenic | 70.0% |
| AGGAGGCGGAGGAGGAGGAG+CGG | + | chr2_3:2892908-2892927 | None:intergenic | 70.0% | |
| ATCCCCACCGGAACCACCGC+CGG | - | chr2_3:2893089-2893108 | Msa0271500:three_prime_UTR | 70.0% | |
| !! | TGAAGCGCCGGCGGTGGTTC+CGG | + | chr2_3:2893099-2893118 | None:intergenic | 70.0% |
| !! | GGAAAGTGAAGCGCCGGCGG+TGG | + | chr2_3:2893105-2893124 | None:intergenic | 70.0% |
| !! | TAGCGGTGGTGGTGGTGGGG+AGG | - | chr2_3:2893576-2893595 | Msa0271500:intron | 70.0% |
| !! | AGCGGTGGTGGTGGTGGGGA+GGG | - | chr2_3:2893577-2893596 | Msa0271500:intron | 70.0% |
| GGAGGCGGAGGAGGAGGAGC+GGG | + | chr2_3:2892907-2892926 | None:intergenic | 75.0% | |
| !! | GCGGTGGTGGTGGTGGGGAG+GGG | - | chr2_3:2893578-2893597 | Msa0271500:intron | 75.0% |
| !! | CGGTGGTGGTGGTGGGGAGG+GGG | - | chr2_3:2893579-2893598 | Msa0271500:intron | 75.0% |
| !! | TGGTGGTGGTGGGGAGGGGG+TGG | - | chr2_3:2893582-2893601 | Msa0271500:intron | 75.0% |
| ! | GCGGAGGAGGAGGAGCGGGC+TGG | + | chr2_3:2892903-2892922 | None:intergenic | 80.0% |
| ! | CGCCGGCGGTGGTTCCGGTG+GGG | + | chr2_3:2893094-2893113 | None:intergenic | 80.0% |
| !! | GCGCCGGCGGTGGTTCCGGT+GGG | + | chr2_3:2893095-2893114 | None:intergenic | 80.0% |
| !!! | AGCGCCGGCGGTGGTTCCGG+TGG | + | chr2_3:2893096-2893115 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2892630 | 2896519 | 2892630 | ID=Msa0271500;Name=Msa0271500 |
| chr2_3 | mRNA | 2892630 | 2896519 | 2892630 | ID=Msa0271500-mRNA-1;Parent=Msa0271500;Name=Msa0271500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|1|1|2|486|256 |
| chr2_3 | exon | 2892630 | 2893202 | 2892630 | ID=Msa0271500-mRNA-1:exon:1407;Parent=Msa0271500-mRNA-1 |
| chr2_3 | exon | 2895716 | 2896519 | 2895716 | ID=Msa0271500-mRNA-1:exon:1406;Parent=Msa0271500-mRNA-1 |
| chr2_3 | five_prime_UTR | 2896400 | 2896519 | 2896400 | ID=Msa0271500-mRNA-1:five_prime_utr;Parent=Msa0271500-mRNA-1 |
| chr2_3 | CDS | 2895716 | 2896399 | 2895716 | ID=Msa0271500-mRNA-1:cds;Parent=Msa0271500-mRNA-1 |
| chr2_3 | CDS | 2893116 | 2893202 | 2893116 | ID=Msa0271500-mRNA-1:cds;Parent=Msa0271500-mRNA-1 |
| chr2_3 | three_prime_UTR | 2892630 | 2893115 | 2892630 | ID=Msa0271500-mRNA-1:three_prime_utr;Parent=Msa0271500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
