Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1073060 | sp|O80674|BH106_ARATH | 62.100 | 219 | 77 | 5 | 18 | 233 | 10 | 225 | 5.04e-80 | 244 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1073060 | A0A396H4N2 | 98.406 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 1.31e-180 | 505 |
Gene ID | Type | Classification |
---|---|---|
Msa1073060 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005390 | Msa1073060 | 0.803928 | 2.757615e-49 | -8.615850e-47 |
Msa0006840 | Msa1073060 | 0.872600 | 2.807667e-67 | -8.615850e-47 |
Msa0030070 | Msa1073060 | 0.821260 | 4.437968e-53 | -8.615850e-47 |
Msa0040640 | Msa1073060 | 0.801991 | 6.934109e-49 | -8.615850e-47 |
Msa0045620 | Msa1073060 | 0.844083 | 9.413170e-59 | -8.615850e-47 |
Msa0050530 | Msa1073060 | 0.851103 | 1.103559e-60 | -8.615850e-47 |
Msa0053850 | Msa1073060 | 0.805110 | 1.563339e-49 | -8.615850e-47 |
Msa0058230 | Msa1073060 | 0.806694 | 7.265388e-50 | -8.615850e-47 |
Msa0058370 | Msa1073060 | 0.812375 | 4.376185e-51 | -8.615850e-47 |
Msa0063190 | Msa1073060 | 0.815307 | 9.885779e-52 | -8.615850e-47 |
Msa0069350 | Msa1073060 | 0.817710 | 2.863798e-52 | -8.615850e-47 |
Msa0080440 | Msa1073060 | 0.801073 | 1.069612e-48 | -8.615850e-47 |
Msa0084990 | Msa1073060 | 0.838863 | 2.233912e-57 | -8.615850e-47 |
Msa0086250 | Msa1073060 | 0.821497 | 3.912508e-53 | -8.615850e-47 |
Msa0091350 | Msa1073060 | 0.800318 | 1.524408e-48 | -8.615850e-47 |
Msa0094180 | Msa1073060 | 0.804200 | 2.421433e-49 | -8.615850e-47 |
Msa0100600 | Msa1073060 | 0.833440 | 5.325650e-56 | -8.615850e-47 |
Msa0100890 | Msa1073060 | 0.851101 | 1.105244e-60 | -8.615850e-47 |
Msa0104570 | Msa1073060 | 0.802578 | 5.250402e-49 | -8.615850e-47 |
Msa0109730 | Msa1073060 | 0.851284 | 9.809789e-61 | -8.615850e-47 |
Msa0607330 | Msa1073060 | 0.802650 | 5.072534e-49 | -8.615850e-47 |
Msa0608350 | Msa1073060 | 0.809046 | 2.295846e-50 | -8.615850e-47 |
Msa0612520 | Msa1073060 | 0.858919 | 5.916399e-63 | -8.615850e-47 |
Msa0614980 | Msa1073060 | -0.843728 | 1.172250e-58 | -8.615850e-47 |
Msa0616230 | Msa1073060 | 0.826973 | 2.022077e-54 | -8.615850e-47 |
Msa0623310 | Msa1073060 | 0.829676 | 4.505576e-55 | -8.615850e-47 |
Msa0647440 | Msa1073060 | 0.822954 | 1.797025e-53 | -8.615850e-47 |
Msa0648760 | Msa1073060 | 0.838971 | 2.093972e-57 | -8.615850e-47 |
Msa0650640 | Msa1073060 | -0.809487 | 1.846903e-50 | -8.615850e-47 |
Msa0653160 | Msa1073060 | 0.881217 | 2.883939e-70 | -8.615850e-47 |
Msa0655710 | Msa1073060 | 0.834002 | 3.854741e-56 | -8.615850e-47 |
Msa0657210 | Msa1073060 | 0.821756 | 3.408810e-53 | -8.615850e-47 |
Msa0660090 | Msa1073060 | 0.838378 | 2.979698e-57 | -8.615850e-47 |
Msa0660260 | Msa1073060 | 0.800428 | 1.448178e-48 | -8.615850e-47 |
Msa0663290 | Msa1073060 | 0.849425 | 3.260591e-60 | -8.615850e-47 |
Msa0664070 | Msa1073060 | 0.843466 | 1.376959e-58 | -8.615850e-47 |
Msa0684750 | Msa1073060 | 0.802041 | 6.770714e-49 | -8.615850e-47 |
Msa0688620 | Msa1073060 | 0.851238 | 1.010968e-60 | -8.615850e-47 |
Msa0690320 | Msa1073060 | 0.855421 | 6.382701e-62 | -8.615850e-47 |
Msa0691270 | Msa1073060 | 0.815408 | 9.386668e-52 | -8.615850e-47 |
Msa0695560 | Msa1073060 | 0.865715 | 4.827940e-65 | -8.615850e-47 |
Msa0699560 | Msa1073060 | 0.817325 | 3.497380e-52 | -8.615850e-47 |
Msa0701250 | Msa1073060 | 0.845558 | 3.769218e-59 | -8.615850e-47 |
Msa0708020 | Msa1073060 | 0.846715 | 1.825136e-59 | -8.615850e-47 |
Msa0715510 | Msa1073060 | 0.833772 | 4.401625e-56 | -8.615850e-47 |
Msa0749190 | Msa1073060 | 0.846570 | 1.998468e-59 | -8.615850e-47 |
Msa0750520 | Msa1073060 | 0.854452 | 1.219258e-61 | -8.615850e-47 |
Msa0751720 | Msa1073060 | 0.820207 | 7.749909e-53 | -8.615850e-47 |
Msa0803140 | Msa1073060 | 0.806188 | 9.285951e-50 | -8.615850e-47 |
Msa0831820 | Msa1073060 | 0.851471 | 8.685023e-61 | -8.615850e-47 |
Msa0841500 | Msa1073060 | 0.834720 | 2.546207e-56 | -8.615850e-47 |
Msa0125590 | Msa1073060 | 0.812646 | 3.818617e-51 | -8.615850e-47 |
Msa0127340 | Msa1073060 | 0.811085 | 8.349029e-51 | -8.615850e-47 |
Msa0134830 | Msa1073060 | 0.819453 | 1.152496e-52 | -8.615850e-47 |
Msa0134930 | Msa1073060 | 0.853315 | 2.592229e-61 | -8.615850e-47 |
Msa0145850 | Msa1073060 | 0.804804 | 1.811544e-49 | -8.615850e-47 |
Msa0150590 | Msa1073060 | 0.805107 | 1.566228e-49 | -8.615850e-47 |
Msa0156050 | Msa1073060 | 0.802941 | 4.417051e-49 | -8.615850e-47 |
Msa0156090 | Msa1073060 | 0.807182 | 5.727810e-50 | -8.615850e-47 |
Msa0168380 | Msa1073060 | 0.808696 | 2.728640e-50 | -8.615850e-47 |
Msa0170070 | Msa1073060 | 0.804536 | 2.060554e-49 | -8.615850e-47 |
Msa0173380 | Msa1073060 | 0.806837 | 6.774388e-50 | -8.615850e-47 |
Msa0177830 | Msa1073060 | 0.835708 | 1.434091e-56 | -8.615850e-47 |
Msa0177970 | Msa1073060 | 0.834004 | 3.851584e-56 | -8.615850e-47 |
Msa0184700 | Msa1073060 | 0.825312 | 5.020051e-54 | -8.615850e-47 |
Msa0186180 | Msa1073060 | 0.804033 | 2.622680e-49 | -8.615850e-47 |
Msa0191570 | Msa1073060 | 0.838961 | 2.106895e-57 | -8.615850e-47 |
Msa0204970 | Msa1073060 | 0.842473 | 2.531236e-58 | -8.615850e-47 |
Msa0214210 | Msa1073060 | 0.854615 | 1.093725e-61 | -8.615850e-47 |
Msa0225800 | Msa1073060 | 0.830742 | 2.474859e-55 | -8.615850e-47 |
Msa0233570 | Msa1073060 | 0.855591 | 5.694193e-62 | -8.615850e-47 |
Msa0235500 | Msa1073060 | 0.820315 | 7.319345e-53 | -8.615850e-47 |
Msa0383940 | Msa1073060 | 0.810652 | 1.036263e-50 | -8.615850e-47 |
Msa0405080 | Msa1073060 | 0.809755 | 1.617357e-50 | -8.615850e-47 |
Msa0420430 | Msa1073060 | 0.854440 | 1.229631e-61 | -8.615850e-47 |
Msa0430040 | Msa1073060 | -0.803794 | 2.940506e-49 | -8.615850e-47 |
Msa0432200 | Msa1073060 | 0.803280 | 3.758791e-49 | -8.615850e-47 |
Msa0432690 | Msa1073060 | 0.815877 | 7.378707e-52 | -8.615850e-47 |
Msa0434090 | Msa1073060 | 0.812326 | 4.485616e-51 | -8.615850e-47 |
Msa0434360 | Msa1073060 | 0.824225 | 9.057307e-54 | -8.615850e-47 |
Msa0461550 | Msa1073060 | 0.838861 | 2.236264e-57 | -8.615850e-47 |
Msa0464050 | Msa1073060 | 0.821901 | 3.154768e-53 | -8.615850e-47 |
Msa0466520 | Msa1073060 | 0.817267 | 3.602628e-52 | -8.615850e-47 |
Msa0477900 | Msa1073060 | 0.803020 | 4.255146e-49 | -8.615850e-47 |
Msa0478200 | Msa1073060 | 0.806946 | 6.424446e-50 | -8.615850e-47 |
Msa0982960 | Msa1073060 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
Msa0999950 | Msa1073060 | 0.823897 | 1.081493e-53 | -8.615850e-47 |
Msa1008850 | Msa1073060 | 0.832671 | 8.276358e-56 | -8.615850e-47 |
Msa1033420 | Msa1073060 | 0.981806 | 1.707562e-153 | -8.615850e-47 |
Msa1034960 | Msa1073060 | 0.828867 | 7.079724e-55 | -8.615850e-47 |
Msa1042300 | Msa1073060 | 0.802315 | 5.945841e-49 | -8.615850e-47 |
Msa1046120 | Msa1073060 | 0.830521 | 2.802897e-55 | -8.615850e-47 |
Msa1060300 | Msa1073060 | 0.810938 | 8.984986e-51 | -8.615850e-47 |
Msa1071410 | Msa1073060 | 0.855374 | 6.584329e-62 | -8.615850e-47 |
Msa1073060 | Msa1085680 | 0.840168 | 1.023164e-57 | -8.615850e-47 |
Msa1073060 | Msa1091050 | 0.840331 | 9.275238e-58 | -8.615850e-47 |
Msa1073060 | Msa1105540 | 0.826182 | 3.121859e-54 | -8.615850e-47 |
Msa1073060 | Msa1105580 | 0.820047 | 8.428706e-53 | -8.615850e-47 |
Msa1073060 | Msa1106220 | 0.840232 | 9.839904e-58 | -8.615850e-47 |
Msa1073060 | Msa1128620 | 0.818463 | 1.934596e-52 | -8.615850e-47 |
Msa1073060 | Msa1130780 | 0.851203 | 1.034346e-60 | -8.615850e-47 |
Msa1073060 | Msa1133970 | 0.837800 | 4.196058e-57 | -8.615850e-47 |
Msa1073060 | Msa1134040 | 0.839015 | 2.040398e-57 | -8.615850e-47 |
Msa1073060 | Msa1136970 | -0.807400 | 5.149114e-50 | -8.615850e-47 |
Msa1073060 | Msa1138800 | 0.810077 | 1.379187e-50 | -8.615850e-47 |
Msa1073060 | Msa1144990 | 0.870406 | 1.495051e-66 | -8.615850e-47 |
Msa1073060 | Msa1154630 | 0.817352 | 3.448441e-52 | -8.615850e-47 |
Msa1073060 | Msa1160780 | 0.914169 | 2.627179e-84 | -8.615850e-47 |
Msa1073060 | Msa1162360 | 0.826683 | 2.371379e-54 | -8.615850e-47 |
Msa1073060 | Msa1169170 | 0.817752 | 2.801522e-52 | -8.615850e-47 |
Msa1073060 | Msa1183910 | 0.811688 | 6.176905e-51 | -8.615850e-47 |
Msa1073060 | Msa1188930 | 0.828937 | 6.810433e-55 | -8.615850e-47 |
Msa1073060 | Msa1206040 | 0.807399 | 5.152820e-50 | -8.615850e-47 |
Msa1073060 | Msa1231490 | 0.803736 | 3.023725e-49 | -8.615850e-47 |
Msa1073060 | Msa1255710 | 0.807483 | 4.945573e-50 | -8.615850e-47 |
Msa1073060 | Msa1267930 | 0.845909 | 3.025259e-59 | -8.615850e-47 |
Msa1073060 | Msa1278030 | 0.840120 | 1.052866e-57 | -8.615850e-47 |
Msa1073060 | Msa1288970 | -0.808768 | 2.633349e-50 | -8.615850e-47 |
Msa1073060 | Msa1293840 | 0.801022 | 1.095279e-48 | -8.615850e-47 |
Msa1073060 | Msa1296860 | 0.809413 | 1.915297e-50 | -8.615850e-47 |
Msa1073060 | Msa1297070 | 0.812743 | 3.636814e-51 | -8.615850e-47 |
Msa1073060 | Msa1308860 | 0.806666 | 7.364808e-50 | -8.615850e-47 |
Msa1073060 | Msa1312240 | 0.806137 | 9.518738e-50 | -8.615850e-47 |
Msa1073060 | Msa1328870 | 0.805884 | 1.076112e-49 | -8.615850e-47 |
Msa1073060 | Msa1331650 | 0.804052 | 2.598754e-49 | -8.615850e-47 |
Msa1073060 | Msa1341750 | 0.860472 | 2.016598e-63 | -8.615850e-47 |
Msa1073060 | Msa1342810 | 0.813851 | 2.075947e-51 | -8.615850e-47 |
Msa1073060 | Msa1343460 | 0.807893 | 4.046764e-50 | -8.615850e-47 |
Msa1073060 | Msa1348330 | 0.806785 | 6.947630e-50 | -8.615850e-47 |
Msa1073060 | Msa1349850 | -0.862079 | 6.532828e-64 | -8.615850e-47 |
Msa1073060 | Msa1356450 | 0.824088 | 9.755269e-54 | -8.615850e-47 |
Msa1073060 | Msa1362590 | 0.846418 | 2.199310e-59 | -8.615850e-47 |
Msa1073060 | Msa1363690 | 0.823449 | 1.376679e-53 | -8.615850e-47 |
Msa1073060 | Msa1368170 | 0.818758 | 1.658578e-52 | -8.615850e-47 |
Msa1073060 | Msa1371270 | 0.809634 | 1.717187e-50 | -8.615850e-47 |
Msa1073060 | Msa1371530 | 0.804580 | 2.017652e-49 | -8.615850e-47 |
Msa1073060 | Msa1371800 | 0.845127 | 4.929947e-59 | -8.615850e-47 |
Msa1073060 | Msa1372030 | 0.863169 | 3.014936e-64 | -8.615850e-47 |
Msa1073060 | Msa1376310 | 0.844629 | 6.717097e-59 | -8.615850e-47 |
Msa1073060 | Msa1377140 | 0.814644 | 1.386980e-51 | -8.615850e-47 |
Msa1073060 | Msa1381800 | 0.849352 | 3.416502e-60 | -8.615850e-47 |
Msa1073060 | Msa1385570 | 0.837475 | 5.086697e-57 | -8.615850e-47 |
Msa1073060 | Msa1389310 | 0.844587 | 6.894249e-59 | -8.615850e-47 |
Msa1073060 | Msa1396550 | 0.820487 | 6.683439e-53 | -8.615850e-47 |
Msa1073060 | Msa1406720 | 0.809299 | 2.027104e-50 | -8.615850e-47 |
Msa1073060 | Msa1417930 | 0.872595 | 2.818969e-67 | -8.615850e-47 |
Msa1073060 | Msa1417950 | 0.801726 | 7.860684e-49 | -8.615850e-47 |
Msa1073060 | Msa1424370 | 0.844388 | 7.796628e-59 | -8.615850e-47 |
Msa1073060 | Msa1427600 | -0.810002 | 1.431155e-50 | -8.615850e-47 |
Msa1073060 | Msa1453030 | 0.813864 | 2.062413e-51 | -8.615850e-47 |
Msa1073060 | Msa1454410 | 0.815918 | 7.227507e-52 | -8.615850e-47 |
Msa1073060 | Msa1460970 | 0.810016 | 1.421357e-50 | -8.615850e-47 |
Msa0241040 | Msa1073060 | 0.823063 | 1.694814e-53 | -8.615850e-47 |
Msa0249870 | Msa1073060 | 0.846379 | 2.254506e-59 | -8.615850e-47 |
Msa0254540 | Msa1073060 | 0.843068 | 1.758347e-58 | -8.615850e-47 |
Msa0260570 | Msa1073060 | 0.803365 | 3.609775e-49 | -8.615850e-47 |
Msa0260630 | Msa1073060 | 0.844497 | 7.287053e-59 | -8.615850e-47 |
Msa0271500 | Msa1073060 | 0.815216 | 1.035588e-51 | -8.615850e-47 |
Msa0274650 | Msa1073060 | 0.825229 | 5.252623e-54 | -8.615850e-47 |
Msa0276800 | Msa1073060 | -0.827794 | 1.284626e-54 | -8.615850e-47 |
Msa0278840 | Msa1073060 | 0.845511 | 3.879796e-59 | -8.615850e-47 |
Msa0281540 | Msa1073060 | 0.845243 | 4.586725e-59 | -8.615850e-47 |
Msa0293840 | Msa1073060 | 0.825377 | 4.844851e-54 | -8.615850e-47 |
Msa0312250 | Msa1073060 | 0.863112 | 3.140214e-64 | -8.615850e-47 |
Msa0316630 | Msa1073060 | 0.801594 | 8.364973e-49 | -8.615850e-47 |
Msa0316720 | Msa1073060 | -0.825383 | 4.831214e-54 | -8.615850e-47 |
Msa0318620 | Msa1073060 | 0.824050 | 9.956524e-54 | -8.615850e-47 |
Msa0320580 | Msa1073060 | 0.840742 | 7.237100e-58 | -8.615850e-47 |
Msa0332280 | Msa1073060 | 0.850767 | 1.372001e-60 | -8.615850e-47 |
Msa0336430 | Msa1073060 | 0.847234 | 1.315380e-59 | -8.615850e-47 |
Msa0336460 | Msa1073060 | 0.806182 | 9.314981e-50 | -8.615850e-47 |
Msa0336520 | Msa1073060 | 0.845837 | 3.164825e-59 | -8.615850e-47 |
Msa0344110 | Msa1073060 | 0.843549 | 1.308607e-58 | -8.615850e-47 |
Msa0346690 | Msa1073060 | 0.800793 | 1.220211e-48 | -8.615850e-47 |
Msa0507810 | Msa1073060 | 0.827506 | 1.506929e-54 | -8.615850e-47 |
Msa0507820 | Msa1073060 | 0.832056 | 1.175457e-55 | -8.615850e-47 |
Msa0507920 | Msa1073060 | 0.813496 | 2.485077e-51 | -8.615850e-47 |
Msa0519060 | Msa1073060 | -0.800353 | 1.499531e-48 | -8.615850e-47 |
Msa0521060 | Msa1073060 | 0.818832 | 1.595316e-52 | -8.615850e-47 |
Msa0521940 | Msa1073060 | 0.845744 | 3.354444e-59 | -8.615850e-47 |
Msa0527200 | Msa1073060 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
Msa0527850 | Msa1073060 | 0.835221 | 1.903893e-56 | -8.615850e-47 |
Msa0536410 | Msa1073060 | 0.816444 | 5.512271e-52 | -8.615850e-47 |
Msa0541740 | Msa1073060 | 0.847121 | 1.412598e-59 | -8.615850e-47 |
Msa0544410 | Msa1073060 | 0.832705 | 8.114346e-56 | -8.615850e-47 |
Msa0553210 | Msa1073060 | 0.824721 | 6.924921e-54 | -8.615850e-47 |
Msa0554300 | Msa1073060 | 0.829986 | 3.785924e-55 | -8.615850e-47 |
Msa0557850 | Msa1073060 | 0.877115 | 8.140356e-69 | -8.615850e-47 |
Msa0562360 | Msa1073060 | 0.813498 | 2.482499e-51 | -8.615850e-47 |
Msa0564980 | Msa1073060 | 0.837734 | 4.363537e-57 | -8.615850e-47 |
Msa0568710 | Msa1073060 | 0.839292 | 1.728999e-57 | -8.615850e-47 |
Msa0571350 | Msa1073060 | 0.828326 | 9.567551e-55 | -8.615850e-47 |
Msa0574660 | Msa1073060 | 0.814003 | 1.922417e-51 | -8.615850e-47 |
Msa0575710 | Msa1073060 | 0.836978 | 6.815462e-57 | -8.615850e-47 |
Msa0576330 | Msa1073060 | 0.843082 | 1.743588e-58 | -8.615850e-47 |
Msa0579360 | Msa1073060 | -0.849815 | 2.538172e-60 | -8.615850e-47 |
Msa0582460 | Msa1073060 | 0.823539 | 1.311686e-53 | -8.615850e-47 |
Msa0586200 | Msa1073060 | 0.822698 | 2.061365e-53 | -8.615850e-47 |
Msa0592510 | Msa1073060 | 0.823935 | 1.059244e-53 | -8.615850e-47 |
Msa0876630 | Msa1073060 | 0.828116 | 1.075069e-54 | -8.615850e-47 |
Msa0900090 | Msa1073060 | 0.800697 | 1.276190e-48 | -8.615850e-47 |
Msa0926760 | Msa1073060 | 0.824939 | 6.149578e-54 | -8.615850e-47 |
Msa0929900 | Msa1073060 | 0.877719 | 5.016395e-69 | -8.615850e-47 |
Msa0930950 | Msa1073060 | -0.862421 | 5.128206e-64 | -8.615850e-47 |
Msa0965470 | Msa1073060 | 0.825383 | 4.830055e-54 | -8.615850e-47 |
Msa0978980 | Msa1073060 | 0.859950 | 2.899843e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1073060 | MtrunA17_Chr7g0255961 | 98.406 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 0.0 | 505 |
Msa1073060 | MtrunA17_Chr1g0198801 | 49.215 | 191 | 90 | 3 | 59 | 243 | 141 | 330 | 9.60e-48 | 161 |
Msa1073060 | MtrunA17_Chr3g0113721 | 40.104 | 192 | 97 | 4 | 68 | 243 | 31 | 220 | 4.82e-41 | 140 |
Msa1073060 | MtrunA17_Chr2g0325521 | 46.369 | 179 | 89 | 3 | 71 | 243 | 54 | 231 | 3.12e-34 | 123 |
Msa1073060 | MtrunA17_Chr4g0041051 | 42.021 | 188 | 92 | 5 | 68 | 243 | 60 | 242 | 2.40e-28 | 108 |
Msa1073060 | MtrunA17_Chr5g0412371 | 34.615 | 208 | 115 | 5 | 32 | 233 | 7 | 199 | 7.78e-28 | 105 |
Msa1073060 | MtrunA17_Chr5g0427361 | 39.080 | 174 | 78 | 3 | 59 | 206 | 19 | 190 | 9.51e-24 | 96.3 |
Msa1073060 | MtrunA17_Chr4g0045901 | 37.805 | 164 | 97 | 4 | 70 | 230 | 69 | 230 | 7.44e-22 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1073060 | AT2G41130.1 | 62.100 | 219 | 77 | 5 | 18 | 233 | 10 | 225 | 5.12e-81 | 244 |
Msa1073060 | AT3G56770.1 | 61.140 | 193 | 61 | 4 | 70 | 250 | 39 | 229 | 6.06e-73 | 222 |
Msa1073060 | AT1G68810.1 | 45.729 | 199 | 96 | 3 | 57 | 243 | 151 | 349 | 2.17e-46 | 159 |
Msa1073060 | AT3G25710.1 | 57.857 | 140 | 57 | 1 | 72 | 211 | 128 | 265 | 6.70e-44 | 151 |
Msa1073060 | AT2G40200.1 | 41.579 | 190 | 94 | 4 | 71 | 245 | 58 | 245 | 8.11e-35 | 125 |
Msa1073060 | AT4G38070.1 | 34.807 | 181 | 102 | 5 | 26 | 206 | 50 | 214 | 2.23e-22 | 92.8 |
Find 73 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTGTTATTTCGTCGGTTT+CGG | 0.235930 | 7_2:-70409839 | None:intergenic |
TTTCGATTAGGTCGGGAATT+AGG | 0.256589 | 7_2:-70409939 | None:intergenic |
CAACAGATTCAGAATAATAT+TGG | 0.265015 | 7_2:+70408441 | Msa1073060:CDS |
ATGGTGGAGTAGTAGTAATA+AGG | 0.320333 | 7_2:-70408319 | None:intergenic |
GTAATAGTTATTGTTGTTAT+CGG | 0.378138 | 7_2:-70408574 | None:intergenic |
GAATTCACTCAGGTCTTTGT+TGG | 0.378871 | 7_2:+70410089 | Msa1073060:CDS |
GAGACTTGAGGATTTCGATT+AGG | 0.380801 | 7_2:-70409951 | None:intergenic |
TGGTGGAGTAGTAGTAATAA+GGG | 0.382130 | 7_2:-70408318 | None:intergenic |
AACTACTAGTACTAATGTAT+AGG | 0.383586 | 7_2:-70410237 | None:intergenic |
AACAGATTCAGAATAATATT+GGG | 0.426141 | 7_2:+70408442 | Msa1073060:CDS |
ACTACTAGTACTAATGTATA+GGG | 0.427247 | 7_2:-70410236 | None:intergenic |
TAGAAAGCTAGTGTAGGTTA+TGG | 0.430337 | 7_2:-70408338 | None:intergenic |
TGTTGCATCATAGTGCTACT+AGG | 0.431842 | 7_2:-70408534 | None:intergenic |
TGAAAGAGATAAGGAAGAAA+GGG | 0.438893 | 7_2:-70408407 | None:intergenic |
GTCGAAAAGGCGTCGAGGGT+TGG | 0.453710 | 7_2:+70410137 | Msa1073060:CDS |
GTTGAGTATTCAAAGAATGA+AGG | 0.456323 | 7_2:-70408510 | None:intergenic |
CATTGGGTTAAGATAAGTTA+AGG | 0.457884 | 7_2:-70410174 | None:intergenic |
GCTGAAATGGCCACACTTGG+TGG | 0.460387 | 7_2:+70409994 | Msa1073060:CDS |
GTGAAAGAGATAAGGAAGAA+AGG | 0.461433 | 7_2:-70408408 | None:intergenic |
CACTCAGGTCTTTGTTGGAT+AGG | 0.462227 | 7_2:+70410094 | Msa1073060:CDS |
CACTGCAAATCAATCTGCAT+TGG | 0.466060 | 7_2:-70410191 | None:intergenic |
AAGAGATAAGGAAGAAAGGG+GGG | 0.467005 | 7_2:-70408404 | None:intergenic |
AGGAAGCTGAGAAGAGAAGA+AGG | 0.471315 | 7_2:+70408673 | Msa1073060:CDS |
GTAGTAATAAGGGGAAGGAA+AGG | 0.472830 | 7_2:-70408308 | None:intergenic |
GGGGAAGGAAAGGGAGTGAG+TGG | 0.478776 | 7_2:-70408298 | None:intergenic |
AGAGATAAGGAAGAAAGGGG+GGG | 0.478876 | 7_2:-70408403 | None:intergenic |
GGCAATGACATCTCCGACGA+AGG | 0.483297 | 7_2:+70409871 | Msa1073060:CDS |
GTTATTTCGTCGGTTTCGGA+TGG | 0.483862 | 7_2:-70409835 | None:intergenic |
GTAATTTCAGAAACTTCAAA+GGG | 0.483898 | 7_2:-70408600 | None:intergenic |
TTGAGGATTTCGATTAGGTC+GGG | 0.493776 | 7_2:-70409946 | None:intergenic |
AGTAATTTCAGAAACTTCAA+AGG | 0.496460 | 7_2:-70408601 | None:intergenic |
CTTGAGGATTTCGATTAGGT+CGG | 0.504746 | 7_2:-70409947 | None:intergenic |
TAGTAATAAGGGGAAGGAAA+GGG | 0.506583 | 7_2:-70408307 | None:intergenic |
AAAGCTAGTGTAGGTTATGG+TGG | 0.508254 | 7_2:-70408335 | None:intergenic |
CCTTGGAGTTGCAAGGGAGA+AGG | 0.512266 | 7_2:-70408731 | None:intergenic |
ACTGCAAATCAATCTGCATT+GGG | 0.520969 | 7_2:-70410190 | None:intergenic |
CTTGGAGTTGCAAGGGAGAA+GGG | 0.521866 | 7_2:-70408730 | None:intergenic |
TTCGTCGGAGATGTCATTGC+CGG | 0.522101 | 7_2:-70409869 | None:intergenic |
TGATAACCTTGTTACTTCCA+AGG | 0.531796 | 7_2:-70410325 | None:intergenic |
GAAGCATTGTGAAAGAGATA+AGG | 0.544855 | 7_2:-70408416 | None:intergenic |
TTGAGTATTCAAAGAATGAA+GGG | 0.546799 | 7_2:-70408509 | None:intergenic |
CCTTCTCCCTTGCAACTCCA+AGG | 0.549041 | 7_2:+70408731 | Msa1073060:CDS |
ATAATAACCTTGGAGTTGCA+AGG | 0.549750 | 7_2:-70408738 | None:intergenic |
AGAGCTGAAATGGCCACACT+TGG | 0.551920 | 7_2:+70409991 | Msa1073060:CDS |
TCTTTGTTGGATAGGTCTAG+TGG | 0.556474 | 7_2:+70410102 | Msa1073060:CDS |
AGATATGACTGTTATTTCGT+CGG | 0.558305 | 7_2:-70409845 | None:intergenic |
GGTCTAGTGGTTGTAACGAT+AGG | 0.565435 | 7_2:+70410115 | Msa1073060:CDS |
GAGTAGTAGTAATAAGGGGA+AGG | 0.570776 | 7_2:-70408313 | None:intergenic |
TAATAACCTTGGAGTTGCAA+GGG | 0.573577 | 7_2:-70408737 | None:intergenic |
ATAGAATAGAAAGCTAGTGT+AGG | 0.573634 | 7_2:-70408344 | None:intergenic |
AAGGGAGAAGGGTACGAAGA+TGG | 0.575464 | 7_2:-70408719 | None:intergenic |
ACGTGTTCTTCCACCAAGTG+TGG | 0.575747 | 7_2:-70410004 | None:intergenic |
GAATATGAGTCTGCCTTCGT+CGG | 0.576237 | 7_2:-70409884 | None:intergenic |
ATAGGTCGAAAAGGCGTCGA+GGG | 0.576982 | 7_2:+70410133 | Msa1073060:CDS |
AGAGCTCTATCTTGCTGAGA+GGG | 0.579252 | 7_2:-70408630 | None:intergenic |
GTTGTAACGATAGGTCGAAA+AGG | 0.580273 | 7_2:+70410124 | Msa1073060:CDS |
GGTGGAGTAGTAGTAATAAG+GGG | 0.585789 | 7_2:-70408317 | None:intergenic |
TTTCAGAAACTTCAAAGGGG+TGG | 0.587837 | 7_2:-70408596 | None:intergenic |
GAAATAACAGTCATATCTGC+CGG | 0.595239 | 7_2:+70409850 | Msa1073060:CDS |
GATTCAGAATAATATTGGGA+TGG | 0.603750 | 7_2:+70408446 | Msa1073060:CDS |
GGAAGCTGAGAAGAGAAGAA+GGG | 0.604105 | 7_2:+70408674 | Msa1073060:CDS |
GATTAGGTCGGGAATTAGGT+CGG | 0.607145 | 7_2:-70409935 | None:intergenic |
ATAGAGCCTTGGAAGTAACA+AGG | 0.623435 | 7_2:+70410319 | Msa1073060:three_prime_UTR |
AAAGAGATAAGGAAGAAAGG+GGG | 0.628364 | 7_2:-70408405 | None:intergenic |
GAAAGAGATAAGGAAGAAAG+GGG | 0.632728 | 7_2:-70408406 | None:intergenic |
GAAGGGTACGAAGATGGTCA+AGG | 0.633890 | 7_2:-70408713 | None:intergenic |
AGCTGCTTTGAAGAATCACA+AGG | 0.645458 | 7_2:+70408653 | Msa1073060:CDS |
TAGAGCTCTATCTTGCTGAG+AGG | 0.647696 | 7_2:-70408631 | None:intergenic |
GATAGGTCGAAAAGGCGTCG+AGG | 0.658588 | 7_2:+70410132 | Msa1073060:CDS |
TGATTGATTTCAGACAGACA+AGG | 0.674472 | 7_2:+70409732 | Msa1073060:intron |
ATGTATAGGGAATGAAAACG+TGG | 0.712817 | 7_2:-70410223 | None:intergenic |
TAATTTCAGAAACTTCAAAG+GGG | 0.757536 | 7_2:-70408599 | None:intergenic |
ATGAAGGGTTGTTAGCAACG+AGG | 0.773094 | 7_2:-70408494 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAGATTCAGAATAATATT+GGG | + | chr7_2:70408442-70408461 | Msa1073060:CDS | 20.0% |
!!! | GTAATAGTTATTGTTGTTAT+CGG | - | chr7_2:70408577-70408596 | None:intergenic | 20.0% |
!! | AATGATGAAAATAATAACCT+TGG | - | chr7_2:70408751-70408770 | None:intergenic | 20.0% |
!! | TCATTCTTAATTATTTGTCT+TGG | + | chr7_2:70408766-70408785 | Msa1073060:intron | 20.0% |
!!! | CTAGATCCTTAATTATTTTT+TGG | + | chr7_2:70409091-70409110 | Msa1073060:intron | 20.0% |
!! | GATGTTCCAAAAAATAATTA+AGG | - | chr7_2:70409100-70409119 | None:intergenic | 20.0% |
!!! | TTGGATTACATATTTTTTGT+AGG | - | chr7_2:70409249-70409268 | None:intergenic | 20.0% |
!!! | GCTTAATTTGCAAATAATTT+TGG | - | chr7_2:70409318-70409337 | None:intergenic | 20.0% |
!! | AATTATTTGCAAATTAAGCT+AGG | + | chr7_2:70409319-70409338 | Msa1073060:intron | 20.0% |
!! | ATTATTTGCAAATTAAGCTA+GGG | + | chr7_2:70409320-70409339 | Msa1073060:intron | 20.0% |
!! | AACAGATTCAGAATAATATT+GGG | + | chr7_2:70408442-70408461 | Msa1073060:CDS | 20.0% |
!!! | GTAATAGTTATTGTTGTTAT+CGG | - | chr7_2:70408577-70408596 | None:intergenic | 20.0% |
!! | AATGATGAAAATAATAACCT+TGG | - | chr7_2:70408751-70408770 | None:intergenic | 20.0% |
!! | TCATTCTTAATTATTTGTCT+TGG | + | chr7_2:70408766-70408785 | Msa1073060:intron | 20.0% |
!!! | CTAGATCCTTAATTATTTTT+TGG | + | chr7_2:70409091-70409110 | Msa1073060:intron | 20.0% |
!! | GATGTTCCAAAAAATAATTA+AGG | - | chr7_2:70409100-70409119 | None:intergenic | 20.0% |
!!! | TTGGATTACATATTTTTTGT+AGG | - | chr7_2:70409249-70409268 | None:intergenic | 20.0% |
!!! | GCTTAATTTGCAAATAATTT+TGG | - | chr7_2:70409318-70409337 | None:intergenic | 20.0% |
!! | AATTATTTGCAAATTAAGCT+AGG | + | chr7_2:70409319-70409338 | Msa1073060:intron | 20.0% |
!! | ATTATTTGCAAATTAAGCTA+GGG | + | chr7_2:70409320-70409339 | Msa1073060:intron | 20.0% |
! | CAACAGATTCAGAATAATAT+TGG | + | chr7_2:70408441-70408460 | Msa1073060:CDS | 25.0% |
! | TTGAGTATTCAAAGAATGAA+GGG | - | chr7_2:70408512-70408531 | None:intergenic | 25.0% |
! | TAATTTCAGAAACTTCAAAG+GGG | - | chr7_2:70408602-70408621 | None:intergenic | 25.0% |
! | GTAATTTCAGAAACTTCAAA+GGG | - | chr7_2:70408603-70408622 | None:intergenic | 25.0% |
! | AGTAATTTCAGAAACTTCAA+AGG | - | chr7_2:70408604-70408623 | None:intergenic | 25.0% |
!! | TTTTGTTCTTTTGTTCTCAA+AGG | + | chr7_2:70408832-70408851 | Msa1073060:intron | 25.0% |
!! | ACATGTTTTCACTCTTTTTT+TGG | - | chr7_2:70408934-70408953 | None:intergenic | 25.0% |
! | CTTAATTACTAAAGTGAGAA+AGG | - | chr7_2:70408989-70409008 | None:intergenic | 25.0% |
! | TAGTCATGTATAAAACTTGA+TGG | - | chr7_2:70409409-70409428 | None:intergenic | 25.0% |
!!! | TTGTAGGTTTTGTAAAATTG+AGG | - | chr7_2:70409528-70409547 | None:intergenic | 25.0% |
!! | TCAATTTTACAAAACCTACA+AGG | + | chr7_2:70409527-70409546 | Msa1073060:intron | 25.0% |
! | ACTACTAGTACTAATGTATA+GGG | - | chr7_2:70410239-70410258 | None:intergenic | 25.0% |
! | AACTACTAGTACTAATGTAT+AGG | - | chr7_2:70410240-70410259 | None:intergenic | 25.0% |
!!! | GTGTTCAGTTATTTTGTAAT+AGG | + | chr7_2:70410267-70410286 | Msa1073060:three_prime_UTR | 25.0% |
! | CAACAGATTCAGAATAATAT+TGG | + | chr7_2:70408441-70408460 | Msa1073060:CDS | 25.0% |
! | TTGAGTATTCAAAGAATGAA+GGG | - | chr7_2:70408512-70408531 | None:intergenic | 25.0% |
! | TAATTTCAGAAACTTCAAAG+GGG | - | chr7_2:70408602-70408621 | None:intergenic | 25.0% |
! | GTAATTTCAGAAACTTCAAA+GGG | - | chr7_2:70408603-70408622 | None:intergenic | 25.0% |
! | AGTAATTTCAGAAACTTCAA+AGG | - | chr7_2:70408604-70408623 | None:intergenic | 25.0% |
!! | TTTTGTTCTTTTGTTCTCAA+AGG | + | chr7_2:70408832-70408851 | Msa1073060:intron | 25.0% |
!! | ACATGTTTTCACTCTTTTTT+TGG | - | chr7_2:70408934-70408953 | None:intergenic | 25.0% |
! | CTTAATTACTAAAGTGAGAA+AGG | - | chr7_2:70408989-70409008 | None:intergenic | 25.0% |
! | TAGTCATGTATAAAACTTGA+TGG | - | chr7_2:70409409-70409428 | None:intergenic | 25.0% |
!!! | TTGTAGGTTTTGTAAAATTG+AGG | - | chr7_2:70409528-70409547 | None:intergenic | 25.0% |
!! | TCAATTTTACAAAACCTACA+AGG | + | chr7_2:70409527-70409546 | Msa1073060:intron | 25.0% |
! | ACTACTAGTACTAATGTATA+GGG | - | chr7_2:70410239-70410258 | None:intergenic | 25.0% |
! | AACTACTAGTACTAATGTAT+AGG | - | chr7_2:70410240-70410259 | None:intergenic | 25.0% |
!!! | GTGTTCAGTTATTTTGTAAT+AGG | + | chr7_2:70410267-70410286 | Msa1073060:three_prime_UTR | 25.0% |
ATAGAATAGAAAGCTAGTGT+AGG | - | chr7_2:70408347-70408366 | None:intergenic | 30.0% | |
TGAAAGAGATAAGGAAGAAA+GGG | - | chr7_2:70408410-70408429 | None:intergenic | 30.0% | |
GATTCAGAATAATATTGGGA+TGG | + | chr7_2:70408446-70408465 | Msa1073060:CDS | 30.0% | |
GTTGAGTATTCAAAGAATGA+AGG | - | chr7_2:70408513-70408532 | None:intergenic | 30.0% | |
!!! | GTTTTCACTCTTTTTTTGGA+TGG | - | chr7_2:70408930-70408949 | None:intergenic | 30.0% |
! | CTTTAGTAATTAAGTTGCCA+TGG | + | chr7_2:70408995-70409014 | Msa1073060:intron | 30.0% |
TGATGAGTGATTAAGTTCAT+TGG | - | chr7_2:70409268-70409287 | None:intergenic | 30.0% | |
AAACCATTGTGATTTAGAAG+AGG | - | chr7_2:70409555-70409574 | None:intergenic | 30.0% | |
!! | TCATTTTTGTCTCAAAACCT+AGG | - | chr7_2:70409632-70409651 | None:intergenic | 30.0% |
!! | AGATATGACTGTTATTTCGT+CGG | - | chr7_2:70409848-70409867 | None:intergenic | 30.0% |
! | ATTTTCTTCAGAATTCACTC+AGG | + | chr7_2:70410079-70410098 | Msa1073060:CDS | 30.0% |
CATTGGGTTAAGATAAGTTA+AGG | - | chr7_2:70410177-70410196 | None:intergenic | 30.0% | |
!! | TAGGATTTGTTTGCTTTTGT+TGG | + | chr7_2:70410286-70410305 | Msa1073060:three_prime_UTR | 30.0% |
ATAGAATAGAAAGCTAGTGT+AGG | - | chr7_2:70408347-70408366 | None:intergenic | 30.0% | |
TGAAAGAGATAAGGAAGAAA+GGG | - | chr7_2:70408410-70408429 | None:intergenic | 30.0% | |
GATTCAGAATAATATTGGGA+TGG | + | chr7_2:70408446-70408465 | Msa1073060:CDS | 30.0% | |
GTTGAGTATTCAAAGAATGA+AGG | - | chr7_2:70408513-70408532 | None:intergenic | 30.0% | |
!!! | GTTTTCACTCTTTTTTTGGA+TGG | - | chr7_2:70408930-70408949 | None:intergenic | 30.0% |
! | CTTTAGTAATTAAGTTGCCA+TGG | + | chr7_2:70408995-70409014 | Msa1073060:intron | 30.0% |
TGATGAGTGATTAAGTTCAT+TGG | - | chr7_2:70409268-70409287 | None:intergenic | 30.0% | |
AAACCATTGTGATTTAGAAG+AGG | - | chr7_2:70409555-70409574 | None:intergenic | 30.0% | |
!! | TCATTTTTGTCTCAAAACCT+AGG | - | chr7_2:70409632-70409651 | None:intergenic | 30.0% |
!! | AGATATGACTGTTATTTCGT+CGG | - | chr7_2:70409848-70409867 | None:intergenic | 30.0% |
! | ATTTTCTTCAGAATTCACTC+AGG | + | chr7_2:70410079-70410098 | Msa1073060:CDS | 30.0% |
CATTGGGTTAAGATAAGTTA+AGG | - | chr7_2:70410177-70410196 | None:intergenic | 30.0% | |
!! | TAGGATTTGTTTGCTTTTGT+TGG | + | chr7_2:70410286-70410305 | Msa1073060:three_prime_UTR | 30.0% |
TAGTAATAAGGGGAAGGAAA+GGG | - | chr7_2:70408310-70408329 | None:intergenic | 35.0% | |
TGGTGGAGTAGTAGTAATAA+GGG | - | chr7_2:70408321-70408340 | None:intergenic | 35.0% | |
! | ATGGTGGAGTAGTAGTAATA+AGG | - | chr7_2:70408322-70408341 | None:intergenic | 35.0% |
TAGAAAGCTAGTGTAGGTTA+TGG | - | chr7_2:70408341-70408360 | None:intergenic | 35.0% | |
AAAGAGATAAGGAAGAAAGG+GGG | - | chr7_2:70408408-70408427 | None:intergenic | 35.0% | |
GAAAGAGATAAGGAAGAAAG+GGG | - | chr7_2:70408409-70408428 | None:intergenic | 35.0% | |
GTGAAAGAGATAAGGAAGAA+AGG | - | chr7_2:70408411-70408430 | None:intergenic | 35.0% | |
!! | GAAGCATTGTGAAAGAGATA+AGG | - | chr7_2:70408419-70408438 | None:intergenic | 35.0% |
TAATAACCTTGGAGTTGCAA+GGG | - | chr7_2:70408740-70408759 | None:intergenic | 35.0% | |
ATAATAACCTTGGAGTTGCA+AGG | - | chr7_2:70408741-70408760 | None:intergenic | 35.0% | |
ACACACACAATTATCTTTGC+TGG | - | chr7_2:70408873-70408892 | None:intergenic | 35.0% | |
! | AGGCATATTTTCACTCATTC+TGG | - | chr7_2:70408969-70408988 | None:intergenic | 35.0% |
! | GTAAAGTACTACATGTTCCA+TGG | - | chr7_2:70409015-70409034 | None:intergenic | 35.0% |
TCTTATGAGTTTAGCACAAG+TGG | + | chr7_2:70409164-70409183 | Msa1073060:intron | 35.0% | |
! | AGTATCGAACTCAAAACATC+CGG | - | chr7_2:70409224-70409243 | None:intergenic | 35.0% |
CTAGTACATGTTTGCATATG+TGG | - | chr7_2:70409590-70409609 | None:intergenic | 35.0% | |
TGATGAAGAAAGCAAAACCT+AGG | + | chr7_2:70409649-70409668 | Msa1073060:intron | 35.0% | |
TCAATCTTGTCACAAAACCT+AGG | - | chr7_2:70409669-70409688 | None:intergenic | 35.0% | |
! | TGATTGATTTCAGACAGACA+AGG | + | chr7_2:70409732-70409751 | Msa1073060:intron | 35.0% |
GAAATAACAGTCATATCTGC+CGG | + | chr7_2:70409850-70409869 | Msa1073060:CDS | 35.0% | |
!!! | TTTTTAGGTGAAGAGACTTG+AGG | - | chr7_2:70409966-70409985 | None:intergenic | 35.0% |
!!! | TTTCAGCTCTGAGAGTTTTT+AGG | - | chr7_2:70409981-70410000 | None:intergenic | 35.0% |
AAAAACTCTCAGAGCTGAAA+TGG | + | chr7_2:70409981-70410000 | Msa1073060:CDS | 35.0% | |
ACTGCAAATCAATCTGCATT+GGG | - | chr7_2:70410193-70410212 | None:intergenic | 35.0% | |
ATGTATAGGGAATGAAAACG+TGG | - | chr7_2:70410226-70410245 | None:intergenic | 35.0% | |
! | GTTTTTCGTTTATAGAGCCT+TGG | + | chr7_2:70410308-70410327 | Msa1073060:three_prime_UTR | 35.0% |
! | TGATAACCTTGTTACTTCCA+AGG | - | chr7_2:70410328-70410347 | None:intergenic | 35.0% |
TAGTAATAAGGGGAAGGAAA+GGG | - | chr7_2:70408310-70408329 | None:intergenic | 35.0% | |
TGGTGGAGTAGTAGTAATAA+GGG | - | chr7_2:70408321-70408340 | None:intergenic | 35.0% | |
! | ATGGTGGAGTAGTAGTAATA+AGG | - | chr7_2:70408322-70408341 | None:intergenic | 35.0% |
TAGAAAGCTAGTGTAGGTTA+TGG | - | chr7_2:70408341-70408360 | None:intergenic | 35.0% | |
AAAGAGATAAGGAAGAAAGG+GGG | - | chr7_2:70408408-70408427 | None:intergenic | 35.0% | |
GAAAGAGATAAGGAAGAAAG+GGG | - | chr7_2:70408409-70408428 | None:intergenic | 35.0% | |
GTGAAAGAGATAAGGAAGAA+AGG | - | chr7_2:70408411-70408430 | None:intergenic | 35.0% | |
!! | GAAGCATTGTGAAAGAGATA+AGG | - | chr7_2:70408419-70408438 | None:intergenic | 35.0% |
TAATAACCTTGGAGTTGCAA+GGG | - | chr7_2:70408740-70408759 | None:intergenic | 35.0% | |
ATAATAACCTTGGAGTTGCA+AGG | - | chr7_2:70408741-70408760 | None:intergenic | 35.0% | |
ACACACACAATTATCTTTGC+TGG | - | chr7_2:70408873-70408892 | None:intergenic | 35.0% | |
! | AGGCATATTTTCACTCATTC+TGG | - | chr7_2:70408969-70408988 | None:intergenic | 35.0% |
! | GTAAAGTACTACATGTTCCA+TGG | - | chr7_2:70409015-70409034 | None:intergenic | 35.0% |
TCTTATGAGTTTAGCACAAG+TGG | + | chr7_2:70409164-70409183 | Msa1073060:intron | 35.0% | |
! | AGTATCGAACTCAAAACATC+CGG | - | chr7_2:70409224-70409243 | None:intergenic | 35.0% |
CTAGTACATGTTTGCATATG+TGG | - | chr7_2:70409590-70409609 | None:intergenic | 35.0% | |
TGATGAAGAAAGCAAAACCT+AGG | + | chr7_2:70409649-70409668 | Msa1073060:intron | 35.0% | |
TCAATCTTGTCACAAAACCT+AGG | - | chr7_2:70409669-70409688 | None:intergenic | 35.0% | |
! | TGATTGATTTCAGACAGACA+AGG | + | chr7_2:70409732-70409751 | Msa1073060:intron | 35.0% |
GAAATAACAGTCATATCTGC+CGG | + | chr7_2:70409850-70409869 | Msa1073060:CDS | 35.0% | |
!!! | TTTTTAGGTGAAGAGACTTG+AGG | - | chr7_2:70409966-70409985 | None:intergenic | 35.0% |
!!! | TTTCAGCTCTGAGAGTTTTT+AGG | - | chr7_2:70409981-70410000 | None:intergenic | 35.0% |
AAAAACTCTCAGAGCTGAAA+TGG | + | chr7_2:70409981-70410000 | Msa1073060:CDS | 35.0% | |
ACTGCAAATCAATCTGCATT+GGG | - | chr7_2:70410193-70410212 | None:intergenic | 35.0% | |
ATGTATAGGGAATGAAAACG+TGG | - | chr7_2:70410226-70410245 | None:intergenic | 35.0% | |
! | GTTTTTCGTTTATAGAGCCT+TGG | + | chr7_2:70410308-70410327 | Msa1073060:three_prime_UTR | 35.0% |
! | TGATAACCTTGTTACTTCCA+AGG | - | chr7_2:70410328-70410347 | None:intergenic | 35.0% |
! | AGTGAGTGGTAGAGTTTTTG+TGG | - | chr7_2:70408287-70408306 | None:intergenic | 40.0% |
GTAGTAATAAGGGGAAGGAA+AGG | - | chr7_2:70408311-70408330 | None:intergenic | 40.0% | |
GAGTAGTAGTAATAAGGGGA+AGG | - | chr7_2:70408316-70408335 | None:intergenic | 40.0% | |
GGTGGAGTAGTAGTAATAAG+GGG | - | chr7_2:70408320-70408339 | None:intergenic | 40.0% | |
AAAGCTAGTGTAGGTTATGG+TGG | - | chr7_2:70408338-70408357 | None:intergenic | 40.0% | |
AAGAGATAAGGAAGAAAGGG+GGG | - | chr7_2:70408407-70408426 | None:intergenic | 40.0% | |
! | TGTTGCATCATAGTGCTACT+AGG | - | chr7_2:70408537-70408556 | None:intergenic | 40.0% |
TTTCAGAAACTTCAAAGGGG+TGG | - | chr7_2:70408599-70408618 | None:intergenic | 40.0% | |
!! | AGCTGCTTTGAAGAATCACA+AGG | + | chr7_2:70408653-70408672 | Msa1073060:CDS | 40.0% |
ATGAGTTTAGCACAAGTGGT+CGG | + | chr7_2:70409168-70409187 | Msa1073060:intron | 40.0% | |
! | TGTCTGAAGTGGTGTATATC+CGG | + | chr7_2:70409202-70409221 | Msa1073060:intron | 40.0% |
TTAAGCTAGGGAAGTCACTT+AGG | + | chr7_2:70409332-70409351 | Msa1073060:intron | 40.0% | |
! | AGGGAAGTCACTTAGGTTTT+AGG | + | chr7_2:70409339-70409358 | Msa1073060:intron | 40.0% |
! | TAGCTTTTGCAAAATCGTGG+TGG | - | chr7_2:70409500-70409519 | None:intergenic | 40.0% |
! | TCGTAGCTTTTGCAAAATCG+TGG | - | chr7_2:70409503-70409522 | None:intergenic | 40.0% |
ATTTAGAAGAGGCTCCTTGT+AGG | - | chr7_2:70409544-70409563 | None:intergenic | 40.0% | |
GAGCCTCTTCTAAATCACAA+TGG | + | chr7_2:70409549-70409568 | Msa1073060:intron | 40.0% | |
TGATGAAGAAAGCAAAGCCT+AGG | + | chr7_2:70409612-70409631 | Msa1073060:intron | 40.0% | |
!! | GACTGTTATTTCGTCGGTTT+CGG | - | chr7_2:70409842-70409861 | None:intergenic | 40.0% |
TTTCGATTAGGTCGGGAATT+AGG | - | chr7_2:70409942-70409961 | None:intergenic | 40.0% | |
TTGAGGATTTCGATTAGGTC+GGG | - | chr7_2:70409949-70409968 | None:intergenic | 40.0% | |
CTTGAGGATTTCGATTAGGT+CGG | - | chr7_2:70409950-70409969 | None:intergenic | 40.0% | |
GAGACTTGAGGATTTCGATT+AGG | - | chr7_2:70409954-70409973 | None:intergenic | 40.0% | |
GAATTCACTCAGGTCTTTGT+TGG | + | chr7_2:70410089-70410108 | Msa1073060:CDS | 40.0% | |
TCTTTGTTGGATAGGTCTAG+TGG | + | chr7_2:70410102-70410121 | Msa1073060:CDS | 40.0% | |
GTTGTAACGATAGGTCGAAA+AGG | + | chr7_2:70410124-70410143 | Msa1073060:CDS | 40.0% | |
CACTGCAAATCAATCTGCAT+TGG | - | chr7_2:70410194-70410213 | None:intergenic | 40.0% | |
ATAGAGCCTTGGAAGTAACA+AGG | + | chr7_2:70410319-70410338 | Msa1073060:three_prime_UTR | 40.0% | |
! | AGTGAGTGGTAGAGTTTTTG+TGG | - | chr7_2:70408287-70408306 | None:intergenic | 40.0% |
GTAGTAATAAGGGGAAGGAA+AGG | - | chr7_2:70408311-70408330 | None:intergenic | 40.0% | |
GAGTAGTAGTAATAAGGGGA+AGG | - | chr7_2:70408316-70408335 | None:intergenic | 40.0% | |
GGTGGAGTAGTAGTAATAAG+GGG | - | chr7_2:70408320-70408339 | None:intergenic | 40.0% | |
AAAGCTAGTGTAGGTTATGG+TGG | - | chr7_2:70408338-70408357 | None:intergenic | 40.0% | |
AAGAGATAAGGAAGAAAGGG+GGG | - | chr7_2:70408407-70408426 | None:intergenic | 40.0% | |
! | TGTTGCATCATAGTGCTACT+AGG | - | chr7_2:70408537-70408556 | None:intergenic | 40.0% |
TTTCAGAAACTTCAAAGGGG+TGG | - | chr7_2:70408599-70408618 | None:intergenic | 40.0% | |
!! | AGCTGCTTTGAAGAATCACA+AGG | + | chr7_2:70408653-70408672 | Msa1073060:CDS | 40.0% |
ATGAGTTTAGCACAAGTGGT+CGG | + | chr7_2:70409168-70409187 | Msa1073060:intron | 40.0% | |
! | TGTCTGAAGTGGTGTATATC+CGG | + | chr7_2:70409202-70409221 | Msa1073060:intron | 40.0% |
TTAAGCTAGGGAAGTCACTT+AGG | + | chr7_2:70409332-70409351 | Msa1073060:intron | 40.0% | |
! | AGGGAAGTCACTTAGGTTTT+AGG | + | chr7_2:70409339-70409358 | Msa1073060:intron | 40.0% |
! | TAGCTTTTGCAAAATCGTGG+TGG | - | chr7_2:70409500-70409519 | None:intergenic | 40.0% |
! | TCGTAGCTTTTGCAAAATCG+TGG | - | chr7_2:70409503-70409522 | None:intergenic | 40.0% |
ATTTAGAAGAGGCTCCTTGT+AGG | - | chr7_2:70409544-70409563 | None:intergenic | 40.0% | |
GAGCCTCTTCTAAATCACAA+TGG | + | chr7_2:70409549-70409568 | Msa1073060:intron | 40.0% | |
TGATGAAGAAAGCAAAGCCT+AGG | + | chr7_2:70409612-70409631 | Msa1073060:intron | 40.0% | |
!! | GACTGTTATTTCGTCGGTTT+CGG | - | chr7_2:70409842-70409861 | None:intergenic | 40.0% |
TTTCGATTAGGTCGGGAATT+AGG | - | chr7_2:70409942-70409961 | None:intergenic | 40.0% | |
TTGAGGATTTCGATTAGGTC+GGG | - | chr7_2:70409949-70409968 | None:intergenic | 40.0% | |
CTTGAGGATTTCGATTAGGT+CGG | - | chr7_2:70409950-70409969 | None:intergenic | 40.0% | |
GAGACTTGAGGATTTCGATT+AGG | - | chr7_2:70409954-70409973 | None:intergenic | 40.0% | |
GAATTCACTCAGGTCTTTGT+TGG | + | chr7_2:70410089-70410108 | Msa1073060:CDS | 40.0% | |
TCTTTGTTGGATAGGTCTAG+TGG | + | chr7_2:70410102-70410121 | Msa1073060:CDS | 40.0% | |
GTTGTAACGATAGGTCGAAA+AGG | + | chr7_2:70410124-70410143 | Msa1073060:CDS | 40.0% | |
CACTGCAAATCAATCTGCAT+TGG | - | chr7_2:70410194-70410213 | None:intergenic | 40.0% | |
ATAGAGCCTTGGAAGTAACA+AGG | + | chr7_2:70410319-70410338 | Msa1073060:three_prime_UTR | 40.0% | |
! | GAGTGGTAGAGTTTTTGTGG+TGG | - | chr7_2:70408284-70408303 | None:intergenic | 45.0% |
AGAGATAAGGAAGAAAGGGG+GGG | - | chr7_2:70408406-70408425 | None:intergenic | 45.0% | |
ATGAAGGGTTGTTAGCAACG+AGG | - | chr7_2:70408497-70408516 | None:intergenic | 45.0% | |
AGAGCTCTATCTTGCTGAGA+GGG | - | chr7_2:70408633-70408652 | None:intergenic | 45.0% | |
TAGAGCTCTATCTTGCTGAG+AGG | - | chr7_2:70408634-70408653 | None:intergenic | 45.0% | |
AGGAAGCTGAGAAGAGAAGA+AGG | + | chr7_2:70408673-70408692 | Msa1073060:CDS | 45.0% | |
GGAAGCTGAGAAGAGAAGAA+GGG | + | chr7_2:70408674-70408693 | Msa1073060:CDS | 45.0% | |
TGCGTAATGTGTGTCTGAAG+TGG | + | chr7_2:70409191-70409210 | Msa1073060:intron | 45.0% | |
!! | GTTATTTCGTCGGTTTCGGA+TGG | - | chr7_2:70409838-70409857 | None:intergenic | 45.0% |
GAATATGAGTCTGCCTTCGT+CGG | - | chr7_2:70409887-70409906 | None:intergenic | 45.0% | |
GATTAGGTCGGGAATTAGGT+CGG | - | chr7_2:70409938-70409957 | None:intergenic | 45.0% | |
CACTCAGGTCTTTGTTGGAT+AGG | + | chr7_2:70410094-70410113 | Msa1073060:CDS | 45.0% | |
GGTCTAGTGGTTGTAACGAT+AGG | + | chr7_2:70410115-70410134 | Msa1073060:CDS | 45.0% | |
! | GAGTGGTAGAGTTTTTGTGG+TGG | - | chr7_2:70408284-70408303 | None:intergenic | 45.0% |
AGAGATAAGGAAGAAAGGGG+GGG | - | chr7_2:70408406-70408425 | None:intergenic | 45.0% | |
ATGAAGGGTTGTTAGCAACG+AGG | - | chr7_2:70408497-70408516 | None:intergenic | 45.0% | |
AGAGCTCTATCTTGCTGAGA+GGG | - | chr7_2:70408633-70408652 | None:intergenic | 45.0% | |
TAGAGCTCTATCTTGCTGAG+AGG | - | chr7_2:70408634-70408653 | None:intergenic | 45.0% | |
AGGAAGCTGAGAAGAGAAGA+AGG | + | chr7_2:70408673-70408692 | Msa1073060:CDS | 45.0% | |
GGAAGCTGAGAAGAGAAGAA+GGG | + | chr7_2:70408674-70408693 | Msa1073060:CDS | 45.0% | |
TGCGTAATGTGTGTCTGAAG+TGG | + | chr7_2:70409191-70409210 | Msa1073060:intron | 45.0% | |
!! | GTTATTTCGTCGGTTTCGGA+TGG | - | chr7_2:70409838-70409857 | None:intergenic | 45.0% |
GAATATGAGTCTGCCTTCGT+CGG | - | chr7_2:70409887-70409906 | None:intergenic | 45.0% | |
GATTAGGTCGGGAATTAGGT+CGG | - | chr7_2:70409938-70409957 | None:intergenic | 45.0% | |
CACTCAGGTCTTTGTTGGAT+AGG | + | chr7_2:70410094-70410113 | Msa1073060:CDS | 45.0% | |
GGTCTAGTGGTTGTAACGAT+AGG | + | chr7_2:70410115-70410134 | Msa1073060:CDS | 45.0% | |
!!! | TTTTATTTTTTTACTATTTA+AGG | - | chr7_2:70409295-70409314 | None:intergenic | 5.0% |
!!! | TTTTATTTTTTTACTATTTA+AGG | - | chr7_2:70409295-70409314 | None:intergenic | 5.0% |
AGATAAGGAAGAAAGGGGGG+GGG | - | chr7_2:70408404-70408423 | None:intergenic | 50.0% | |
GAGATAAGGAAGAAAGGGGG+GGG | - | chr7_2:70408405-70408424 | None:intergenic | 50.0% | |
! | GAAGGGTACGAAGATGGTCA+AGG | - | chr7_2:70408716-70408735 | None:intergenic | 50.0% |
! | AAGGGAGAAGGGTACGAAGA+TGG | - | chr7_2:70408722-70408741 | None:intergenic | 50.0% |
CTTGGAGTTGCAAGGGAGAA+GGG | - | chr7_2:70408733-70408752 | None:intergenic | 50.0% | |
TTCGTCGGAGATGTCATTGC+CGG | - | chr7_2:70409872-70409891 | None:intergenic | 50.0% | |
AGAGCTGAAATGGCCACACT+TGG | + | chr7_2:70409991-70410010 | Msa1073060:CDS | 50.0% | |
ACGTGTTCTTCCACCAAGTG+TGG | - | chr7_2:70410007-70410026 | None:intergenic | 50.0% | |
!! | ATAGGTCGAAAAGGCGTCGA+GGG | + | chr7_2:70410133-70410152 | Msa1073060:CDS | 50.0% |
AGATAAGGAAGAAAGGGGGG+GGG | - | chr7_2:70408404-70408423 | None:intergenic | 50.0% | |
GAGATAAGGAAGAAAGGGGG+GGG | - | chr7_2:70408405-70408424 | None:intergenic | 50.0% | |
! | GAAGGGTACGAAGATGGTCA+AGG | - | chr7_2:70408716-70408735 | None:intergenic | 50.0% |
! | AAGGGAGAAGGGTACGAAGA+TGG | - | chr7_2:70408722-70408741 | None:intergenic | 50.0% |
CTTGGAGTTGCAAGGGAGAA+GGG | - | chr7_2:70408733-70408752 | None:intergenic | 50.0% | |
TTCGTCGGAGATGTCATTGC+CGG | - | chr7_2:70409872-70409891 | None:intergenic | 50.0% | |
AGAGCTGAAATGGCCACACT+TGG | + | chr7_2:70409991-70410010 | Msa1073060:CDS | 50.0% | |
ACGTGTTCTTCCACCAAGTG+TGG | - | chr7_2:70410007-70410026 | None:intergenic | 50.0% | |
!! | ATAGGTCGAAAAGGCGTCGA+GGG | + | chr7_2:70410133-70410152 | Msa1073060:CDS | 50.0% |
ATAAGGAAGAAAGGGGGGGG+GGG | - | chr7_2:70408402-70408421 | None:intergenic | 55.0% | |
GATAAGGAAGAAAGGGGGGG+GGG | - | chr7_2:70408403-70408422 | None:intergenic | 55.0% | |
CCTTGGAGTTGCAAGGGAGA+AGG | - | chr7_2:70408734-70408753 | None:intergenic | 55.0% | |
CCTTCTCCCTTGCAACTCCA+AGG | + | chr7_2:70408731-70408750 | Msa1073060:CDS | 55.0% | |
GGCAATGACATCTCCGACGA+AGG | + | chr7_2:70409871-70409890 | Msa1073060:CDS | 55.0% | |
GCTGAAATGGCCACACTTGG+TGG | + | chr7_2:70409994-70410013 | Msa1073060:CDS | 55.0% | |
!! | GATAGGTCGAAAAGGCGTCG+AGG | + | chr7_2:70410132-70410151 | Msa1073060:CDS | 55.0% |
ATAAGGAAGAAAGGGGGGGG+GGG | - | chr7_2:70408402-70408421 | None:intergenic | 55.0% | |
GATAAGGAAGAAAGGGGGGG+GGG | - | chr7_2:70408403-70408422 | None:intergenic | 55.0% | |
CCTTGGAGTTGCAAGGGAGA+AGG | - | chr7_2:70408734-70408753 | None:intergenic | 55.0% | |
CCTTCTCCCTTGCAACTCCA+AGG | + | chr7_2:70408731-70408750 | Msa1073060:CDS | 55.0% | |
GGCAATGACATCTCCGACGA+AGG | + | chr7_2:70409871-70409890 | Msa1073060:CDS | 55.0% | |
GCTGAAATGGCCACACTTGG+TGG | + | chr7_2:70409994-70410013 | Msa1073060:CDS | 55.0% | |
!! | GATAGGTCGAAAAGGCGTCG+AGG | + | chr7_2:70410132-70410151 | Msa1073060:CDS | 55.0% |
GGGGAAGGAAAGGGAGTGAG+TGG | - | chr7_2:70408301-70408320 | None:intergenic | 60.0% | |
TAAGGAAGAAAGGGGGGGGG+GGG | - | chr7_2:70408401-70408420 | None:intergenic | 60.0% | |
!! | GTCGAAAAGGCGTCGAGGGT+TGG | + | chr7_2:70410137-70410156 | Msa1073060:CDS | 60.0% |
GGGGAAGGAAAGGGAGTGAG+TGG | - | chr7_2:70408301-70408320 | None:intergenic | 60.0% | |
TAAGGAAGAAAGGGGGGGGG+GGG | - | chr7_2:70408401-70408420 | None:intergenic | 60.0% | |
!! | GTCGAAAAGGCGTCGAGGGT+TGG | + | chr7_2:70410137-70410156 | Msa1073060:CDS | 60.0% |
AAGGAAGAAAGGGGGGGGGG+GGG | - | chr7_2:70408400-70408419 | None:intergenic | 65.0% | |
AAGGAAGAAAGGGGGGGGGG+GGG | - | chr7_2:70408400-70408419 | None:intergenic | 65.0% | |
AGGAAGAAAGGGGGGGGGGG+GGG | - | chr7_2:70408399-70408418 | None:intergenic | 70.0% | |
AGGAAGAAAGGGGGGGGGGG+GGG | - | chr7_2:70408399-70408418 | None:intergenic | 70.0% | |
AAGAAAGGGGGGGGGGGGGG+GGG | - | chr7_2:70408396-70408415 | None:intergenic | 75.0% | |
GAAGAAAGGGGGGGGGGGGG+GGG | - | chr7_2:70408397-70408416 | None:intergenic | 75.0% | |
GGAAGAAAGGGGGGGGGGGG+GGG | - | chr7_2:70408398-70408417 | None:intergenic | 75.0% | |
AAGAAAGGGGGGGGGGGGGG+GGG | - | chr7_2:70408396-70408415 | None:intergenic | 75.0% | |
GAAGAAAGGGGGGGGGGGGG+GGG | - | chr7_2:70408397-70408416 | None:intergenic | 75.0% | |
GGAAGAAAGGGGGGGGGGGG+GGG | - | chr7_2:70408398-70408417 | None:intergenic | 75.0% | |
! | AGAAAGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408395-70408414 | None:intergenic | 80.0% |
! | AGAAAGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408395-70408414 | None:intergenic | 80.0% |
! | AAAGGGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408393-70408412 | None:intergenic | 85.0% |
! | GAAAGGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408394-70408413 | None:intergenic | 85.0% |
! | AAAGGGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408393-70408412 | None:intergenic | 85.0% |
! | GAAAGGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408394-70408413 | None:intergenic | 85.0% |
!! | GGGGGGGGGGGGGGGGGTGT+AGG | - | chr7_2:70408386-70408405 | None:intergenic | 90.0% |
! | AAGGGGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408392-70408411 | None:intergenic | 90.0% |
!! | GGGGGGGGGGGGGGGGGTGT+AGG | - | chr7_2:70408386-70408405 | None:intergenic | 90.0% |
! | AAGGGGGGGGGGGGGGGGGG+GGG | - | chr7_2:70408392-70408411 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 70408257 | 70410483 | 70408257 | ID=Msa1073060;Name=Msa1073060 |
chr7_2 | mRNA | 70408257 | 70410483 | 70408257 | ID=Msa1073060-mRNA-1;Parent=Msa1073060;Name=Msa1073060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|1|1|2|304|251 |
chr7_2 | exon | 70408257 | 70408752 | 70408257 | ID=Msa1073060-mRNA-1:exon:15845;Parent=Msa1073060-mRNA-1 |
chr7_2 | exon | 70409745 | 70410483 | 70409745 | ID=Msa1073060-mRNA-1:exon:15846;Parent=Msa1073060-mRNA-1 |
chr7_2 | five_prime_UTR | 70408257 | 70408431 | 70408257 | ID=Msa1073060-mRNA-1:five_prime_utr;Parent=Msa1073060-mRNA-1 |
chr7_2 | CDS | 70408432 | 70408752 | 70408432 | ID=Msa1073060-mRNA-1:cds;Parent=Msa1073060-mRNA-1 |
chr7_2 | CDS | 70409745 | 70410179 | 70409745 | ID=Msa1073060-mRNA-1:cds;Parent=Msa1073060-mRNA-1 |
chr7_2 | three_prime_UTR | 70410180 | 70410483 | 70410180 | ID=Msa1073060-mRNA-1:three_prime_utr;Parent=Msa1073060-mRNA-1 |
Gene Sequence |
Protein sequence |