AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073060 MtrunA17_Chr7g0255961 98.406 251 3 1 1 251 1 250 0.0 505
Msa1073060 MtrunA17_Chr1g0198801 49.215 191 90 3 59 243 141 330 9.60e-48 161
Msa1073060 MtrunA17_Chr3g0113721 40.104 192 97 4 68 243 31 220 4.82e-41 140
Msa1073060 MtrunA17_Chr2g0325521 46.369 179 89 3 71 243 54 231 3.12e-34 123
Msa1073060 MtrunA17_Chr4g0041051 42.021 188 92 5 68 243 60 242 2.40e-28 108
Msa1073060 MtrunA17_Chr5g0412371 34.615 208 115 5 32 233 7 199 7.78e-28 105
Msa1073060 MtrunA17_Chr5g0427361 39.080 174 78 3 59 206 19 190 9.51e-24 96.3
Msa1073060 MtrunA17_Chr4g0045901 37.805 164 97 4 70 230 69 230 7.44e-22 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073060 AT2G41130.1 62.100 219 77 5 18 233 10 225 5.12e-81 244
Msa1073060 AT3G56770.1 61.140 193 61 4 70 250 39 229 6.06e-73 222
Msa1073060 AT1G68810.1 45.729 199 96 3 57 243 151 349 2.17e-46 159
Msa1073060 AT3G25710.1 57.857 140 57 1 72 211 128 265 6.70e-44 151
Msa1073060 AT2G40200.1 41.579 190 94 4 71 245 58 245 8.11e-35 125
Msa1073060 AT4G38070.1 34.807 181 102 5 26 206 50 214 2.23e-22 92.8

Find 73 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTGTTATTTCGTCGGTTT+CGG 0.235930 7_2:-70409839 None:intergenic
TTTCGATTAGGTCGGGAATT+AGG 0.256589 7_2:-70409939 None:intergenic
CAACAGATTCAGAATAATAT+TGG 0.265015 7_2:+70408441 Msa1073060:CDS
ATGGTGGAGTAGTAGTAATA+AGG 0.320333 7_2:-70408319 None:intergenic
GTAATAGTTATTGTTGTTAT+CGG 0.378138 7_2:-70408574 None:intergenic
GAATTCACTCAGGTCTTTGT+TGG 0.378871 7_2:+70410089 Msa1073060:CDS
GAGACTTGAGGATTTCGATT+AGG 0.380801 7_2:-70409951 None:intergenic
TGGTGGAGTAGTAGTAATAA+GGG 0.382130 7_2:-70408318 None:intergenic
AACTACTAGTACTAATGTAT+AGG 0.383586 7_2:-70410237 None:intergenic
AACAGATTCAGAATAATATT+GGG 0.426141 7_2:+70408442 Msa1073060:CDS
ACTACTAGTACTAATGTATA+GGG 0.427247 7_2:-70410236 None:intergenic
TAGAAAGCTAGTGTAGGTTA+TGG 0.430337 7_2:-70408338 None:intergenic
TGTTGCATCATAGTGCTACT+AGG 0.431842 7_2:-70408534 None:intergenic
TGAAAGAGATAAGGAAGAAA+GGG 0.438893 7_2:-70408407 None:intergenic
GTCGAAAAGGCGTCGAGGGT+TGG 0.453710 7_2:+70410137 Msa1073060:CDS
GTTGAGTATTCAAAGAATGA+AGG 0.456323 7_2:-70408510 None:intergenic
CATTGGGTTAAGATAAGTTA+AGG 0.457884 7_2:-70410174 None:intergenic
GCTGAAATGGCCACACTTGG+TGG 0.460387 7_2:+70409994 Msa1073060:CDS
GTGAAAGAGATAAGGAAGAA+AGG 0.461433 7_2:-70408408 None:intergenic
CACTCAGGTCTTTGTTGGAT+AGG 0.462227 7_2:+70410094 Msa1073060:CDS
CACTGCAAATCAATCTGCAT+TGG 0.466060 7_2:-70410191 None:intergenic
AAGAGATAAGGAAGAAAGGG+GGG 0.467005 7_2:-70408404 None:intergenic
AGGAAGCTGAGAAGAGAAGA+AGG 0.471315 7_2:+70408673 Msa1073060:CDS
GTAGTAATAAGGGGAAGGAA+AGG 0.472830 7_2:-70408308 None:intergenic
GGGGAAGGAAAGGGAGTGAG+TGG 0.478776 7_2:-70408298 None:intergenic
AGAGATAAGGAAGAAAGGGG+GGG 0.478876 7_2:-70408403 None:intergenic
GGCAATGACATCTCCGACGA+AGG 0.483297 7_2:+70409871 Msa1073060:CDS
GTTATTTCGTCGGTTTCGGA+TGG 0.483862 7_2:-70409835 None:intergenic
GTAATTTCAGAAACTTCAAA+GGG 0.483898 7_2:-70408600 None:intergenic
TTGAGGATTTCGATTAGGTC+GGG 0.493776 7_2:-70409946 None:intergenic
AGTAATTTCAGAAACTTCAA+AGG 0.496460 7_2:-70408601 None:intergenic
CTTGAGGATTTCGATTAGGT+CGG 0.504746 7_2:-70409947 None:intergenic
TAGTAATAAGGGGAAGGAAA+GGG 0.506583 7_2:-70408307 None:intergenic
AAAGCTAGTGTAGGTTATGG+TGG 0.508254 7_2:-70408335 None:intergenic
CCTTGGAGTTGCAAGGGAGA+AGG 0.512266 7_2:-70408731 None:intergenic
ACTGCAAATCAATCTGCATT+GGG 0.520969 7_2:-70410190 None:intergenic
CTTGGAGTTGCAAGGGAGAA+GGG 0.521866 7_2:-70408730 None:intergenic
TTCGTCGGAGATGTCATTGC+CGG 0.522101 7_2:-70409869 None:intergenic
TGATAACCTTGTTACTTCCA+AGG 0.531796 7_2:-70410325 None:intergenic
GAAGCATTGTGAAAGAGATA+AGG 0.544855 7_2:-70408416 None:intergenic
TTGAGTATTCAAAGAATGAA+GGG 0.546799 7_2:-70408509 None:intergenic
CCTTCTCCCTTGCAACTCCA+AGG 0.549041 7_2:+70408731 Msa1073060:CDS
ATAATAACCTTGGAGTTGCA+AGG 0.549750 7_2:-70408738 None:intergenic
AGAGCTGAAATGGCCACACT+TGG 0.551920 7_2:+70409991 Msa1073060:CDS
TCTTTGTTGGATAGGTCTAG+TGG 0.556474 7_2:+70410102 Msa1073060:CDS
AGATATGACTGTTATTTCGT+CGG 0.558305 7_2:-70409845 None:intergenic
GGTCTAGTGGTTGTAACGAT+AGG 0.565435 7_2:+70410115 Msa1073060:CDS
GAGTAGTAGTAATAAGGGGA+AGG 0.570776 7_2:-70408313 None:intergenic
TAATAACCTTGGAGTTGCAA+GGG 0.573577 7_2:-70408737 None:intergenic
ATAGAATAGAAAGCTAGTGT+AGG 0.573634 7_2:-70408344 None:intergenic
AAGGGAGAAGGGTACGAAGA+TGG 0.575464 7_2:-70408719 None:intergenic
ACGTGTTCTTCCACCAAGTG+TGG 0.575747 7_2:-70410004 None:intergenic
GAATATGAGTCTGCCTTCGT+CGG 0.576237 7_2:-70409884 None:intergenic
ATAGGTCGAAAAGGCGTCGA+GGG 0.576982 7_2:+70410133 Msa1073060:CDS
AGAGCTCTATCTTGCTGAGA+GGG 0.579252 7_2:-70408630 None:intergenic
GTTGTAACGATAGGTCGAAA+AGG 0.580273 7_2:+70410124 Msa1073060:CDS
GGTGGAGTAGTAGTAATAAG+GGG 0.585789 7_2:-70408317 None:intergenic
TTTCAGAAACTTCAAAGGGG+TGG 0.587837 7_2:-70408596 None:intergenic
GAAATAACAGTCATATCTGC+CGG 0.595239 7_2:+70409850 Msa1073060:CDS
GATTCAGAATAATATTGGGA+TGG 0.603750 7_2:+70408446 Msa1073060:CDS
GGAAGCTGAGAAGAGAAGAA+GGG 0.604105 7_2:+70408674 Msa1073060:CDS
GATTAGGTCGGGAATTAGGT+CGG 0.607145 7_2:-70409935 None:intergenic
ATAGAGCCTTGGAAGTAACA+AGG 0.623435 7_2:+70410319 Msa1073060:three_prime_UTR
AAAGAGATAAGGAAGAAAGG+GGG 0.628364 7_2:-70408405 None:intergenic
GAAAGAGATAAGGAAGAAAG+GGG 0.632728 7_2:-70408406 None:intergenic
GAAGGGTACGAAGATGGTCA+AGG 0.633890 7_2:-70408713 None:intergenic
AGCTGCTTTGAAGAATCACA+AGG 0.645458 7_2:+70408653 Msa1073060:CDS
TAGAGCTCTATCTTGCTGAG+AGG 0.647696 7_2:-70408631 None:intergenic
GATAGGTCGAAAAGGCGTCG+AGG 0.658588 7_2:+70410132 Msa1073060:CDS
TGATTGATTTCAGACAGACA+AGG 0.674472 7_2:+70409732 Msa1073060:intron
ATGTATAGGGAATGAAAACG+TGG 0.712817 7_2:-70410223 None:intergenic
TAATTTCAGAAACTTCAAAG+GGG 0.757536 7_2:-70408599 None:intergenic
ATGAAGGGTTGTTAGCAACG+AGG 0.773094 7_2:-70408494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGATTCAGAATAATATT+GGG + chr7_2:70408442-70408461 Msa1073060:CDS 20.0%
!!! GTAATAGTTATTGTTGTTAT+CGG - chr7_2:70408577-70408596 None:intergenic 20.0%
!! AATGATGAAAATAATAACCT+TGG - chr7_2:70408751-70408770 None:intergenic 20.0%
!! TCATTCTTAATTATTTGTCT+TGG + chr7_2:70408766-70408785 Msa1073060:intron 20.0%
!!! CTAGATCCTTAATTATTTTT+TGG + chr7_2:70409091-70409110 Msa1073060:intron 20.0%
!! GATGTTCCAAAAAATAATTA+AGG - chr7_2:70409100-70409119 None:intergenic 20.0%
!!! TTGGATTACATATTTTTTGT+AGG - chr7_2:70409249-70409268 None:intergenic 20.0%
!!! GCTTAATTTGCAAATAATTT+TGG - chr7_2:70409318-70409337 None:intergenic 20.0%
!! AATTATTTGCAAATTAAGCT+AGG + chr7_2:70409319-70409338 Msa1073060:intron 20.0%
!! ATTATTTGCAAATTAAGCTA+GGG + chr7_2:70409320-70409339 Msa1073060:intron 20.0%
!! AACAGATTCAGAATAATATT+GGG + chr7_2:70408442-70408461 Msa1073060:CDS 20.0%
!!! GTAATAGTTATTGTTGTTAT+CGG - chr7_2:70408577-70408596 None:intergenic 20.0%
!! AATGATGAAAATAATAACCT+TGG - chr7_2:70408751-70408770 None:intergenic 20.0%
!! TCATTCTTAATTATTTGTCT+TGG + chr7_2:70408766-70408785 Msa1073060:intron 20.0%
!!! CTAGATCCTTAATTATTTTT+TGG + chr7_2:70409091-70409110 Msa1073060:intron 20.0%
!! GATGTTCCAAAAAATAATTA+AGG - chr7_2:70409100-70409119 None:intergenic 20.0%
!!! TTGGATTACATATTTTTTGT+AGG - chr7_2:70409249-70409268 None:intergenic 20.0%
!!! GCTTAATTTGCAAATAATTT+TGG - chr7_2:70409318-70409337 None:intergenic 20.0%
!! AATTATTTGCAAATTAAGCT+AGG + chr7_2:70409319-70409338 Msa1073060:intron 20.0%
!! ATTATTTGCAAATTAAGCTA+GGG + chr7_2:70409320-70409339 Msa1073060:intron 20.0%
! CAACAGATTCAGAATAATAT+TGG + chr7_2:70408441-70408460 Msa1073060:CDS 25.0%
! TTGAGTATTCAAAGAATGAA+GGG - chr7_2:70408512-70408531 None:intergenic 25.0%
! TAATTTCAGAAACTTCAAAG+GGG - chr7_2:70408602-70408621 None:intergenic 25.0%
! GTAATTTCAGAAACTTCAAA+GGG - chr7_2:70408603-70408622 None:intergenic 25.0%
! AGTAATTTCAGAAACTTCAA+AGG - chr7_2:70408604-70408623 None:intergenic 25.0%
!! TTTTGTTCTTTTGTTCTCAA+AGG + chr7_2:70408832-70408851 Msa1073060:intron 25.0%
!! ACATGTTTTCACTCTTTTTT+TGG - chr7_2:70408934-70408953 None:intergenic 25.0%
! CTTAATTACTAAAGTGAGAA+AGG - chr7_2:70408989-70409008 None:intergenic 25.0%
! TAGTCATGTATAAAACTTGA+TGG - chr7_2:70409409-70409428 None:intergenic 25.0%
!!! TTGTAGGTTTTGTAAAATTG+AGG - chr7_2:70409528-70409547 None:intergenic 25.0%
!! TCAATTTTACAAAACCTACA+AGG + chr7_2:70409527-70409546 Msa1073060:intron 25.0%
! ACTACTAGTACTAATGTATA+GGG - chr7_2:70410239-70410258 None:intergenic 25.0%
! AACTACTAGTACTAATGTAT+AGG - chr7_2:70410240-70410259 None:intergenic 25.0%
!!! GTGTTCAGTTATTTTGTAAT+AGG + chr7_2:70410267-70410286 Msa1073060:three_prime_UTR 25.0%
! CAACAGATTCAGAATAATAT+TGG + chr7_2:70408441-70408460 Msa1073060:CDS 25.0%
! TTGAGTATTCAAAGAATGAA+GGG - chr7_2:70408512-70408531 None:intergenic 25.0%
! TAATTTCAGAAACTTCAAAG+GGG - chr7_2:70408602-70408621 None:intergenic 25.0%
! GTAATTTCAGAAACTTCAAA+GGG - chr7_2:70408603-70408622 None:intergenic 25.0%
! AGTAATTTCAGAAACTTCAA+AGG - chr7_2:70408604-70408623 None:intergenic 25.0%
!! TTTTGTTCTTTTGTTCTCAA+AGG + chr7_2:70408832-70408851 Msa1073060:intron 25.0%
!! ACATGTTTTCACTCTTTTTT+TGG - chr7_2:70408934-70408953 None:intergenic 25.0%
! CTTAATTACTAAAGTGAGAA+AGG - chr7_2:70408989-70409008 None:intergenic 25.0%
! TAGTCATGTATAAAACTTGA+TGG - chr7_2:70409409-70409428 None:intergenic 25.0%
!!! TTGTAGGTTTTGTAAAATTG+AGG - chr7_2:70409528-70409547 None:intergenic 25.0%
!! TCAATTTTACAAAACCTACA+AGG + chr7_2:70409527-70409546 Msa1073060:intron 25.0%
! ACTACTAGTACTAATGTATA+GGG - chr7_2:70410239-70410258 None:intergenic 25.0%
! AACTACTAGTACTAATGTAT+AGG - chr7_2:70410240-70410259 None:intergenic 25.0%
!!! GTGTTCAGTTATTTTGTAAT+AGG + chr7_2:70410267-70410286 Msa1073060:three_prime_UTR 25.0%
ATAGAATAGAAAGCTAGTGT+AGG - chr7_2:70408347-70408366 None:intergenic 30.0%
TGAAAGAGATAAGGAAGAAA+GGG - chr7_2:70408410-70408429 None:intergenic 30.0%
GATTCAGAATAATATTGGGA+TGG + chr7_2:70408446-70408465 Msa1073060:CDS 30.0%
GTTGAGTATTCAAAGAATGA+AGG - chr7_2:70408513-70408532 None:intergenic 30.0%
!!! GTTTTCACTCTTTTTTTGGA+TGG - chr7_2:70408930-70408949 None:intergenic 30.0%
! CTTTAGTAATTAAGTTGCCA+TGG + chr7_2:70408995-70409014 Msa1073060:intron 30.0%
TGATGAGTGATTAAGTTCAT+TGG - chr7_2:70409268-70409287 None:intergenic 30.0%
AAACCATTGTGATTTAGAAG+AGG - chr7_2:70409555-70409574 None:intergenic 30.0%
!! TCATTTTTGTCTCAAAACCT+AGG - chr7_2:70409632-70409651 None:intergenic 30.0%
!! AGATATGACTGTTATTTCGT+CGG - chr7_2:70409848-70409867 None:intergenic 30.0%
! ATTTTCTTCAGAATTCACTC+AGG + chr7_2:70410079-70410098 Msa1073060:CDS 30.0%
CATTGGGTTAAGATAAGTTA+AGG - chr7_2:70410177-70410196 None:intergenic 30.0%
!! TAGGATTTGTTTGCTTTTGT+TGG + chr7_2:70410286-70410305 Msa1073060:three_prime_UTR 30.0%
ATAGAATAGAAAGCTAGTGT+AGG - chr7_2:70408347-70408366 None:intergenic 30.0%
TGAAAGAGATAAGGAAGAAA+GGG - chr7_2:70408410-70408429 None:intergenic 30.0%
GATTCAGAATAATATTGGGA+TGG + chr7_2:70408446-70408465 Msa1073060:CDS 30.0%
GTTGAGTATTCAAAGAATGA+AGG - chr7_2:70408513-70408532 None:intergenic 30.0%
!!! GTTTTCACTCTTTTTTTGGA+TGG - chr7_2:70408930-70408949 None:intergenic 30.0%
! CTTTAGTAATTAAGTTGCCA+TGG + chr7_2:70408995-70409014 Msa1073060:intron 30.0%
TGATGAGTGATTAAGTTCAT+TGG - chr7_2:70409268-70409287 None:intergenic 30.0%
AAACCATTGTGATTTAGAAG+AGG - chr7_2:70409555-70409574 None:intergenic 30.0%
!! TCATTTTTGTCTCAAAACCT+AGG - chr7_2:70409632-70409651 None:intergenic 30.0%
!! AGATATGACTGTTATTTCGT+CGG - chr7_2:70409848-70409867 None:intergenic 30.0%
! ATTTTCTTCAGAATTCACTC+AGG + chr7_2:70410079-70410098 Msa1073060:CDS 30.0%
CATTGGGTTAAGATAAGTTA+AGG - chr7_2:70410177-70410196 None:intergenic 30.0%
!! TAGGATTTGTTTGCTTTTGT+TGG + chr7_2:70410286-70410305 Msa1073060:three_prime_UTR 30.0%
TAGTAATAAGGGGAAGGAAA+GGG - chr7_2:70408310-70408329 None:intergenic 35.0%
TGGTGGAGTAGTAGTAATAA+GGG - chr7_2:70408321-70408340 None:intergenic 35.0%
! ATGGTGGAGTAGTAGTAATA+AGG - chr7_2:70408322-70408341 None:intergenic 35.0%
TAGAAAGCTAGTGTAGGTTA+TGG - chr7_2:70408341-70408360 None:intergenic 35.0%
AAAGAGATAAGGAAGAAAGG+GGG - chr7_2:70408408-70408427 None:intergenic 35.0%
GAAAGAGATAAGGAAGAAAG+GGG - chr7_2:70408409-70408428 None:intergenic 35.0%
GTGAAAGAGATAAGGAAGAA+AGG - chr7_2:70408411-70408430 None:intergenic 35.0%
!! GAAGCATTGTGAAAGAGATA+AGG - chr7_2:70408419-70408438 None:intergenic 35.0%
TAATAACCTTGGAGTTGCAA+GGG - chr7_2:70408740-70408759 None:intergenic 35.0%
ATAATAACCTTGGAGTTGCA+AGG - chr7_2:70408741-70408760 None:intergenic 35.0%
ACACACACAATTATCTTTGC+TGG - chr7_2:70408873-70408892 None:intergenic 35.0%
! AGGCATATTTTCACTCATTC+TGG - chr7_2:70408969-70408988 None:intergenic 35.0%
! GTAAAGTACTACATGTTCCA+TGG - chr7_2:70409015-70409034 None:intergenic 35.0%
TCTTATGAGTTTAGCACAAG+TGG + chr7_2:70409164-70409183 Msa1073060:intron 35.0%
! AGTATCGAACTCAAAACATC+CGG - chr7_2:70409224-70409243 None:intergenic 35.0%
CTAGTACATGTTTGCATATG+TGG - chr7_2:70409590-70409609 None:intergenic 35.0%
TGATGAAGAAAGCAAAACCT+AGG + chr7_2:70409649-70409668 Msa1073060:intron 35.0%
TCAATCTTGTCACAAAACCT+AGG - chr7_2:70409669-70409688 None:intergenic 35.0%
! TGATTGATTTCAGACAGACA+AGG + chr7_2:70409732-70409751 Msa1073060:intron 35.0%
GAAATAACAGTCATATCTGC+CGG + chr7_2:70409850-70409869 Msa1073060:CDS 35.0%
!!! TTTTTAGGTGAAGAGACTTG+AGG - chr7_2:70409966-70409985 None:intergenic 35.0%
!!! TTTCAGCTCTGAGAGTTTTT+AGG - chr7_2:70409981-70410000 None:intergenic 35.0%
AAAAACTCTCAGAGCTGAAA+TGG + chr7_2:70409981-70410000 Msa1073060:CDS 35.0%
ACTGCAAATCAATCTGCATT+GGG - chr7_2:70410193-70410212 None:intergenic 35.0%
ATGTATAGGGAATGAAAACG+TGG - chr7_2:70410226-70410245 None:intergenic 35.0%
! GTTTTTCGTTTATAGAGCCT+TGG + chr7_2:70410308-70410327 Msa1073060:three_prime_UTR 35.0%
! TGATAACCTTGTTACTTCCA+AGG - chr7_2:70410328-70410347 None:intergenic 35.0%
TAGTAATAAGGGGAAGGAAA+GGG - chr7_2:70408310-70408329 None:intergenic 35.0%
TGGTGGAGTAGTAGTAATAA+GGG - chr7_2:70408321-70408340 None:intergenic 35.0%
! ATGGTGGAGTAGTAGTAATA+AGG - chr7_2:70408322-70408341 None:intergenic 35.0%
TAGAAAGCTAGTGTAGGTTA+TGG - chr7_2:70408341-70408360 None:intergenic 35.0%
AAAGAGATAAGGAAGAAAGG+GGG - chr7_2:70408408-70408427 None:intergenic 35.0%
GAAAGAGATAAGGAAGAAAG+GGG - chr7_2:70408409-70408428 None:intergenic 35.0%
GTGAAAGAGATAAGGAAGAA+AGG - chr7_2:70408411-70408430 None:intergenic 35.0%
!! GAAGCATTGTGAAAGAGATA+AGG - chr7_2:70408419-70408438 None:intergenic 35.0%
TAATAACCTTGGAGTTGCAA+GGG - chr7_2:70408740-70408759 None:intergenic 35.0%
ATAATAACCTTGGAGTTGCA+AGG - chr7_2:70408741-70408760 None:intergenic 35.0%
ACACACACAATTATCTTTGC+TGG - chr7_2:70408873-70408892 None:intergenic 35.0%
! AGGCATATTTTCACTCATTC+TGG - chr7_2:70408969-70408988 None:intergenic 35.0%
! GTAAAGTACTACATGTTCCA+TGG - chr7_2:70409015-70409034 None:intergenic 35.0%
TCTTATGAGTTTAGCACAAG+TGG + chr7_2:70409164-70409183 Msa1073060:intron 35.0%
! AGTATCGAACTCAAAACATC+CGG - chr7_2:70409224-70409243 None:intergenic 35.0%
CTAGTACATGTTTGCATATG+TGG - chr7_2:70409590-70409609 None:intergenic 35.0%
TGATGAAGAAAGCAAAACCT+AGG + chr7_2:70409649-70409668 Msa1073060:intron 35.0%
TCAATCTTGTCACAAAACCT+AGG - chr7_2:70409669-70409688 None:intergenic 35.0%
! TGATTGATTTCAGACAGACA+AGG + chr7_2:70409732-70409751 Msa1073060:intron 35.0%
GAAATAACAGTCATATCTGC+CGG + chr7_2:70409850-70409869 Msa1073060:CDS 35.0%
!!! TTTTTAGGTGAAGAGACTTG+AGG - chr7_2:70409966-70409985 None:intergenic 35.0%
!!! TTTCAGCTCTGAGAGTTTTT+AGG - chr7_2:70409981-70410000 None:intergenic 35.0%
AAAAACTCTCAGAGCTGAAA+TGG + chr7_2:70409981-70410000 Msa1073060:CDS 35.0%
ACTGCAAATCAATCTGCATT+GGG - chr7_2:70410193-70410212 None:intergenic 35.0%
ATGTATAGGGAATGAAAACG+TGG - chr7_2:70410226-70410245 None:intergenic 35.0%
! GTTTTTCGTTTATAGAGCCT+TGG + chr7_2:70410308-70410327 Msa1073060:three_prime_UTR 35.0%
! TGATAACCTTGTTACTTCCA+AGG - chr7_2:70410328-70410347 None:intergenic 35.0%
! AGTGAGTGGTAGAGTTTTTG+TGG - chr7_2:70408287-70408306 None:intergenic 40.0%
GTAGTAATAAGGGGAAGGAA+AGG - chr7_2:70408311-70408330 None:intergenic 40.0%
GAGTAGTAGTAATAAGGGGA+AGG - chr7_2:70408316-70408335 None:intergenic 40.0%
GGTGGAGTAGTAGTAATAAG+GGG - chr7_2:70408320-70408339 None:intergenic 40.0%
AAAGCTAGTGTAGGTTATGG+TGG - chr7_2:70408338-70408357 None:intergenic 40.0%
AAGAGATAAGGAAGAAAGGG+GGG - chr7_2:70408407-70408426 None:intergenic 40.0%
! TGTTGCATCATAGTGCTACT+AGG - chr7_2:70408537-70408556 None:intergenic 40.0%
TTTCAGAAACTTCAAAGGGG+TGG - chr7_2:70408599-70408618 None:intergenic 40.0%
!! AGCTGCTTTGAAGAATCACA+AGG + chr7_2:70408653-70408672 Msa1073060:CDS 40.0%
ATGAGTTTAGCACAAGTGGT+CGG + chr7_2:70409168-70409187 Msa1073060:intron 40.0%
! TGTCTGAAGTGGTGTATATC+CGG + chr7_2:70409202-70409221 Msa1073060:intron 40.0%
TTAAGCTAGGGAAGTCACTT+AGG + chr7_2:70409332-70409351 Msa1073060:intron 40.0%
! AGGGAAGTCACTTAGGTTTT+AGG + chr7_2:70409339-70409358 Msa1073060:intron 40.0%
! TAGCTTTTGCAAAATCGTGG+TGG - chr7_2:70409500-70409519 None:intergenic 40.0%
! TCGTAGCTTTTGCAAAATCG+TGG - chr7_2:70409503-70409522 None:intergenic 40.0%
ATTTAGAAGAGGCTCCTTGT+AGG - chr7_2:70409544-70409563 None:intergenic 40.0%
GAGCCTCTTCTAAATCACAA+TGG + chr7_2:70409549-70409568 Msa1073060:intron 40.0%
TGATGAAGAAAGCAAAGCCT+AGG + chr7_2:70409612-70409631 Msa1073060:intron 40.0%
!! GACTGTTATTTCGTCGGTTT+CGG - chr7_2:70409842-70409861 None:intergenic 40.0%
TTTCGATTAGGTCGGGAATT+AGG - chr7_2:70409942-70409961 None:intergenic 40.0%
TTGAGGATTTCGATTAGGTC+GGG - chr7_2:70409949-70409968 None:intergenic 40.0%
CTTGAGGATTTCGATTAGGT+CGG - chr7_2:70409950-70409969 None:intergenic 40.0%
GAGACTTGAGGATTTCGATT+AGG - chr7_2:70409954-70409973 None:intergenic 40.0%
GAATTCACTCAGGTCTTTGT+TGG + chr7_2:70410089-70410108 Msa1073060:CDS 40.0%
TCTTTGTTGGATAGGTCTAG+TGG + chr7_2:70410102-70410121 Msa1073060:CDS 40.0%
GTTGTAACGATAGGTCGAAA+AGG + chr7_2:70410124-70410143 Msa1073060:CDS 40.0%
CACTGCAAATCAATCTGCAT+TGG - chr7_2:70410194-70410213 None:intergenic 40.0%
ATAGAGCCTTGGAAGTAACA+AGG + chr7_2:70410319-70410338 Msa1073060:three_prime_UTR 40.0%
! AGTGAGTGGTAGAGTTTTTG+TGG - chr7_2:70408287-70408306 None:intergenic 40.0%
GTAGTAATAAGGGGAAGGAA+AGG - chr7_2:70408311-70408330 None:intergenic 40.0%
GAGTAGTAGTAATAAGGGGA+AGG - chr7_2:70408316-70408335 None:intergenic 40.0%
GGTGGAGTAGTAGTAATAAG+GGG - chr7_2:70408320-70408339 None:intergenic 40.0%
AAAGCTAGTGTAGGTTATGG+TGG - chr7_2:70408338-70408357 None:intergenic 40.0%
AAGAGATAAGGAAGAAAGGG+GGG - chr7_2:70408407-70408426 None:intergenic 40.0%
! TGTTGCATCATAGTGCTACT+AGG - chr7_2:70408537-70408556 None:intergenic 40.0%
TTTCAGAAACTTCAAAGGGG+TGG - chr7_2:70408599-70408618 None:intergenic 40.0%
!! AGCTGCTTTGAAGAATCACA+AGG + chr7_2:70408653-70408672 Msa1073060:CDS 40.0%
ATGAGTTTAGCACAAGTGGT+CGG + chr7_2:70409168-70409187 Msa1073060:intron 40.0%
! TGTCTGAAGTGGTGTATATC+CGG + chr7_2:70409202-70409221 Msa1073060:intron 40.0%
TTAAGCTAGGGAAGTCACTT+AGG + chr7_2:70409332-70409351 Msa1073060:intron 40.0%
! AGGGAAGTCACTTAGGTTTT+AGG + chr7_2:70409339-70409358 Msa1073060:intron 40.0%
! TAGCTTTTGCAAAATCGTGG+TGG - chr7_2:70409500-70409519 None:intergenic 40.0%
! TCGTAGCTTTTGCAAAATCG+TGG - chr7_2:70409503-70409522 None:intergenic 40.0%
ATTTAGAAGAGGCTCCTTGT+AGG - chr7_2:70409544-70409563 None:intergenic 40.0%
GAGCCTCTTCTAAATCACAA+TGG + chr7_2:70409549-70409568 Msa1073060:intron 40.0%
TGATGAAGAAAGCAAAGCCT+AGG + chr7_2:70409612-70409631 Msa1073060:intron 40.0%
!! GACTGTTATTTCGTCGGTTT+CGG - chr7_2:70409842-70409861 None:intergenic 40.0%
TTTCGATTAGGTCGGGAATT+AGG - chr7_2:70409942-70409961 None:intergenic 40.0%
TTGAGGATTTCGATTAGGTC+GGG - chr7_2:70409949-70409968 None:intergenic 40.0%
CTTGAGGATTTCGATTAGGT+CGG - chr7_2:70409950-70409969 None:intergenic 40.0%
GAGACTTGAGGATTTCGATT+AGG - chr7_2:70409954-70409973 None:intergenic 40.0%
GAATTCACTCAGGTCTTTGT+TGG + chr7_2:70410089-70410108 Msa1073060:CDS 40.0%
TCTTTGTTGGATAGGTCTAG+TGG + chr7_2:70410102-70410121 Msa1073060:CDS 40.0%
GTTGTAACGATAGGTCGAAA+AGG + chr7_2:70410124-70410143 Msa1073060:CDS 40.0%
CACTGCAAATCAATCTGCAT+TGG - chr7_2:70410194-70410213 None:intergenic 40.0%
ATAGAGCCTTGGAAGTAACA+AGG + chr7_2:70410319-70410338 Msa1073060:three_prime_UTR 40.0%
! GAGTGGTAGAGTTTTTGTGG+TGG - chr7_2:70408284-70408303 None:intergenic 45.0%
AGAGATAAGGAAGAAAGGGG+GGG - chr7_2:70408406-70408425 None:intergenic 45.0%
ATGAAGGGTTGTTAGCAACG+AGG - chr7_2:70408497-70408516 None:intergenic 45.0%
AGAGCTCTATCTTGCTGAGA+GGG - chr7_2:70408633-70408652 None:intergenic 45.0%
TAGAGCTCTATCTTGCTGAG+AGG - chr7_2:70408634-70408653 None:intergenic 45.0%
AGGAAGCTGAGAAGAGAAGA+AGG + chr7_2:70408673-70408692 Msa1073060:CDS 45.0%
GGAAGCTGAGAAGAGAAGAA+GGG + chr7_2:70408674-70408693 Msa1073060:CDS 45.0%
TGCGTAATGTGTGTCTGAAG+TGG + chr7_2:70409191-70409210 Msa1073060:intron 45.0%
!! GTTATTTCGTCGGTTTCGGA+TGG - chr7_2:70409838-70409857 None:intergenic 45.0%
GAATATGAGTCTGCCTTCGT+CGG - chr7_2:70409887-70409906 None:intergenic 45.0%
GATTAGGTCGGGAATTAGGT+CGG - chr7_2:70409938-70409957 None:intergenic 45.0%
CACTCAGGTCTTTGTTGGAT+AGG + chr7_2:70410094-70410113 Msa1073060:CDS 45.0%
GGTCTAGTGGTTGTAACGAT+AGG + chr7_2:70410115-70410134 Msa1073060:CDS 45.0%
! GAGTGGTAGAGTTTTTGTGG+TGG - chr7_2:70408284-70408303 None:intergenic 45.0%
AGAGATAAGGAAGAAAGGGG+GGG - chr7_2:70408406-70408425 None:intergenic 45.0%
ATGAAGGGTTGTTAGCAACG+AGG - chr7_2:70408497-70408516 None:intergenic 45.0%
AGAGCTCTATCTTGCTGAGA+GGG - chr7_2:70408633-70408652 None:intergenic 45.0%
TAGAGCTCTATCTTGCTGAG+AGG - chr7_2:70408634-70408653 None:intergenic 45.0%
AGGAAGCTGAGAAGAGAAGA+AGG + chr7_2:70408673-70408692 Msa1073060:CDS 45.0%
GGAAGCTGAGAAGAGAAGAA+GGG + chr7_2:70408674-70408693 Msa1073060:CDS 45.0%
TGCGTAATGTGTGTCTGAAG+TGG + chr7_2:70409191-70409210 Msa1073060:intron 45.0%
!! GTTATTTCGTCGGTTTCGGA+TGG - chr7_2:70409838-70409857 None:intergenic 45.0%
GAATATGAGTCTGCCTTCGT+CGG - chr7_2:70409887-70409906 None:intergenic 45.0%
GATTAGGTCGGGAATTAGGT+CGG - chr7_2:70409938-70409957 None:intergenic 45.0%
CACTCAGGTCTTTGTTGGAT+AGG + chr7_2:70410094-70410113 Msa1073060:CDS 45.0%
GGTCTAGTGGTTGTAACGAT+AGG + chr7_2:70410115-70410134 Msa1073060:CDS 45.0%
!!! TTTTATTTTTTTACTATTTA+AGG - chr7_2:70409295-70409314 None:intergenic 5.0%
!!! TTTTATTTTTTTACTATTTA+AGG - chr7_2:70409295-70409314 None:intergenic 5.0%
AGATAAGGAAGAAAGGGGGG+GGG - chr7_2:70408404-70408423 None:intergenic 50.0%
GAGATAAGGAAGAAAGGGGG+GGG - chr7_2:70408405-70408424 None:intergenic 50.0%
! GAAGGGTACGAAGATGGTCA+AGG - chr7_2:70408716-70408735 None:intergenic 50.0%
! AAGGGAGAAGGGTACGAAGA+TGG - chr7_2:70408722-70408741 None:intergenic 50.0%
CTTGGAGTTGCAAGGGAGAA+GGG - chr7_2:70408733-70408752 None:intergenic 50.0%
TTCGTCGGAGATGTCATTGC+CGG - chr7_2:70409872-70409891 None:intergenic 50.0%
AGAGCTGAAATGGCCACACT+TGG + chr7_2:70409991-70410010 Msa1073060:CDS 50.0%
ACGTGTTCTTCCACCAAGTG+TGG - chr7_2:70410007-70410026 None:intergenic 50.0%
!! ATAGGTCGAAAAGGCGTCGA+GGG + chr7_2:70410133-70410152 Msa1073060:CDS 50.0%
AGATAAGGAAGAAAGGGGGG+GGG - chr7_2:70408404-70408423 None:intergenic 50.0%
GAGATAAGGAAGAAAGGGGG+GGG - chr7_2:70408405-70408424 None:intergenic 50.0%
! GAAGGGTACGAAGATGGTCA+AGG - chr7_2:70408716-70408735 None:intergenic 50.0%
! AAGGGAGAAGGGTACGAAGA+TGG - chr7_2:70408722-70408741 None:intergenic 50.0%
CTTGGAGTTGCAAGGGAGAA+GGG - chr7_2:70408733-70408752 None:intergenic 50.0%
TTCGTCGGAGATGTCATTGC+CGG - chr7_2:70409872-70409891 None:intergenic 50.0%
AGAGCTGAAATGGCCACACT+TGG + chr7_2:70409991-70410010 Msa1073060:CDS 50.0%
ACGTGTTCTTCCACCAAGTG+TGG - chr7_2:70410007-70410026 None:intergenic 50.0%
!! ATAGGTCGAAAAGGCGTCGA+GGG + chr7_2:70410133-70410152 Msa1073060:CDS 50.0%
ATAAGGAAGAAAGGGGGGGG+GGG - chr7_2:70408402-70408421 None:intergenic 55.0%
GATAAGGAAGAAAGGGGGGG+GGG - chr7_2:70408403-70408422 None:intergenic 55.0%
CCTTGGAGTTGCAAGGGAGA+AGG - chr7_2:70408734-70408753 None:intergenic 55.0%
CCTTCTCCCTTGCAACTCCA+AGG + chr7_2:70408731-70408750 Msa1073060:CDS 55.0%
GGCAATGACATCTCCGACGA+AGG + chr7_2:70409871-70409890 Msa1073060:CDS 55.0%
GCTGAAATGGCCACACTTGG+TGG + chr7_2:70409994-70410013 Msa1073060:CDS 55.0%
!! GATAGGTCGAAAAGGCGTCG+AGG + chr7_2:70410132-70410151 Msa1073060:CDS 55.0%
ATAAGGAAGAAAGGGGGGGG+GGG - chr7_2:70408402-70408421 None:intergenic 55.0%
GATAAGGAAGAAAGGGGGGG+GGG - chr7_2:70408403-70408422 None:intergenic 55.0%
CCTTGGAGTTGCAAGGGAGA+AGG - chr7_2:70408734-70408753 None:intergenic 55.0%
CCTTCTCCCTTGCAACTCCA+AGG + chr7_2:70408731-70408750 Msa1073060:CDS 55.0%
GGCAATGACATCTCCGACGA+AGG + chr7_2:70409871-70409890 Msa1073060:CDS 55.0%
GCTGAAATGGCCACACTTGG+TGG + chr7_2:70409994-70410013 Msa1073060:CDS 55.0%
!! GATAGGTCGAAAAGGCGTCG+AGG + chr7_2:70410132-70410151 Msa1073060:CDS 55.0%
GGGGAAGGAAAGGGAGTGAG+TGG - chr7_2:70408301-70408320 None:intergenic 60.0%
TAAGGAAGAAAGGGGGGGGG+GGG - chr7_2:70408401-70408420 None:intergenic 60.0%
!! GTCGAAAAGGCGTCGAGGGT+TGG + chr7_2:70410137-70410156 Msa1073060:CDS 60.0%
GGGGAAGGAAAGGGAGTGAG+TGG - chr7_2:70408301-70408320 None:intergenic 60.0%
TAAGGAAGAAAGGGGGGGGG+GGG - chr7_2:70408401-70408420 None:intergenic 60.0%
!! GTCGAAAAGGCGTCGAGGGT+TGG + chr7_2:70410137-70410156 Msa1073060:CDS 60.0%
AAGGAAGAAAGGGGGGGGGG+GGG - chr7_2:70408400-70408419 None:intergenic 65.0%
AAGGAAGAAAGGGGGGGGGG+GGG - chr7_2:70408400-70408419 None:intergenic 65.0%
AGGAAGAAAGGGGGGGGGGG+GGG - chr7_2:70408399-70408418 None:intergenic 70.0%
AGGAAGAAAGGGGGGGGGGG+GGG - chr7_2:70408399-70408418 None:intergenic 70.0%
AAGAAAGGGGGGGGGGGGGG+GGG - chr7_2:70408396-70408415 None:intergenic 75.0%
GAAGAAAGGGGGGGGGGGGG+GGG - chr7_2:70408397-70408416 None:intergenic 75.0%
GGAAGAAAGGGGGGGGGGGG+GGG - chr7_2:70408398-70408417 None:intergenic 75.0%
AAGAAAGGGGGGGGGGGGGG+GGG - chr7_2:70408396-70408415 None:intergenic 75.0%
GAAGAAAGGGGGGGGGGGGG+GGG - chr7_2:70408397-70408416 None:intergenic 75.0%
GGAAGAAAGGGGGGGGGGGG+GGG - chr7_2:70408398-70408417 None:intergenic 75.0%
! AGAAAGGGGGGGGGGGGGGG+GGG - chr7_2:70408395-70408414 None:intergenic 80.0%
! AGAAAGGGGGGGGGGGGGGG+GGG - chr7_2:70408395-70408414 None:intergenic 80.0%
! AAAGGGGGGGGGGGGGGGGG+GGG - chr7_2:70408393-70408412 None:intergenic 85.0%
! GAAAGGGGGGGGGGGGGGGG+GGG - chr7_2:70408394-70408413 None:intergenic 85.0%
! AAAGGGGGGGGGGGGGGGGG+GGG - chr7_2:70408393-70408412 None:intergenic 85.0%
! GAAAGGGGGGGGGGGGGGGG+GGG - chr7_2:70408394-70408413 None:intergenic 85.0%
!! GGGGGGGGGGGGGGGGGTGT+AGG - chr7_2:70408386-70408405 None:intergenic 90.0%
! AAGGGGGGGGGGGGGGGGGG+GGG - chr7_2:70408392-70408411 None:intergenic 90.0%
!! GGGGGGGGGGGGGGGGGTGT+AGG - chr7_2:70408386-70408405 None:intergenic 90.0%
! AAGGGGGGGGGGGGGGGGGG+GGG - chr7_2:70408392-70408411 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70408257 70410483 70408257 ID=Msa1073060;Name=Msa1073060
chr7_2 mRNA 70408257 70410483 70408257 ID=Msa1073060-mRNA-1;Parent=Msa1073060;Name=Msa1073060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|1|1|2|304|251
chr7_2 exon 70408257 70408752 70408257 ID=Msa1073060-mRNA-1:exon:15845;Parent=Msa1073060-mRNA-1
chr7_2 exon 70409745 70410483 70409745 ID=Msa1073060-mRNA-1:exon:15846;Parent=Msa1073060-mRNA-1
chr7_2 five_prime_UTR 70408257 70408431 70408257 ID=Msa1073060-mRNA-1:five_prime_utr;Parent=Msa1073060-mRNA-1
chr7_2 CDS 70408432 70408752 70408432 ID=Msa1073060-mRNA-1:cds;Parent=Msa1073060-mRNA-1
chr7_2 CDS 70409745 70410179 70409745 ID=Msa1073060-mRNA-1:cds;Parent=Msa1073060-mRNA-1
chr7_2 three_prime_UTR 70410180 70410483 70410180 ID=Msa1073060-mRNA-1:three_prime_utr;Parent=Msa1073060-mRNA-1
Gene Sequence

>Msa1073060

ATGCTTCAGCAACAGATTCAGAATAATATTGGGATGGAAAACAACTCTGAACTCTTTCAATTCCTCGTTGCTAACAACCCTTCATTCTTTGAATACTCAACACCTAGTAGCACTATGATGCAACAAAGTTTCTGCAGTTCTTCCGATAACAACAATAACTATTACCACCCCTTTGAAGTTTCTGAAATTACTGATACACCCTCTCAGCAAGATAGAGCTCTAGCTGCTTTGAAGAATCACAAGGAAGCTGAGAAGAGAAGAAGGGAAAGAATTAACTCTCACCTTGACCATCTTCGTACCCTTCTCCCTTGCAACTCCAAGACAGACAAGGCTTCACTTCTAGCAAAAGTAGTAGAACGTGTGAAAGAATTAAAGCAACAAACATCTCAAATCACACAACTCGAAACTGTTCCATCCGAAACCGACGAAATAACAGTCATATCTGCCGGCAATGACATCTCCGACGAAGGCAGACTCATATTCAAAGCTTCATTATGCTGCGAAGATCGCTCCGACCTAATTCCCGACCTAATCGAAATCCTCAAGTCTCTTCACCTAAAAACTCTCAGAGCTGAAATGGCCACACTTGGTGGAAGAACACGTAACGTTCTTGTTGTTGCTGCTGAGAAAGAACATAATAGCATTGAATCTATTCATTTTCTTCAGAATTCACTCAGGTCTTTGTTGGATAGGTCTAGTGGTTGTAACGATAGGTCGAAAAGGCGTCGAGGGTTGGATAGAAGAATGATGCCTTAA

Protein sequence

>Msa1073060

MLQQQIQNNIGMENNSELFQFLVANNPSFFEYSTPSSTMMQQSFCSSSDNNNNYYHPFEVSEITDTPSQQDRALAALKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSQITQLETVPSETDEITVISAGNDISDEGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLRAEMATLGGRTRNVLVVAAEKEHNSIESIHFLQNSLRSLLDRSSGCNDRSKRRRGLDRRMMP*